Multiple sequence alignment - TraesCS7D01G254100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G254100 chr7D 100.000 2789 0 0 1 2789 230940780 230943568 0.000000e+00 5151
1 TraesCS7D01G254100 chr7B 92.435 1811 78 30 654 2445 202359115 202360885 0.000000e+00 2531
2 TraesCS7D01G254100 chr7B 90.789 532 18 14 1 524 202358419 202358927 0.000000e+00 682
3 TraesCS7D01G254100 chr7B 89.124 331 23 8 2461 2787 202360872 202361193 1.560000e-107 399
4 TraesCS7D01G254100 chr7A 93.558 1304 51 18 513 1795 243694103 243695394 0.000000e+00 1912
5 TraesCS7D01G254100 chr7A 86.403 581 32 24 1878 2445 243695395 243695941 2.390000e-165 592
6 TraesCS7D01G254100 chr7A 86.355 513 32 15 2 494 243667383 243667877 2.460000e-145 525
7 TraesCS7D01G254100 chr7A 86.905 336 25 9 2461 2789 243695928 243696251 2.640000e-95 359
8 TraesCS7D01G254100 chr5A 75.538 511 117 5 1073 1582 488038542 488039045 7.720000e-61 244
9 TraesCS7D01G254100 chr5D 76.211 475 101 7 1073 1544 386209869 386210334 9.980000e-60 241


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G254100 chr7D 230940780 230943568 2788 False 5151.000000 5151 100.000000 1 2789 1 chr7D.!!$F1 2788
1 TraesCS7D01G254100 chr7B 202358419 202361193 2774 False 1204.000000 2531 90.782667 1 2787 3 chr7B.!!$F1 2786
2 TraesCS7D01G254100 chr7A 243694103 243696251 2148 False 954.333333 1912 88.955333 513 2789 3 chr7A.!!$F2 2276
3 TraesCS7D01G254100 chr5A 488038542 488039045 503 False 244.000000 244 75.538000 1073 1582 1 chr5A.!!$F1 509


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
717 796 0.028902 GCACACCAAACTCACGGAAC 59.971 55.0 0.0 0.0 0.0 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2273 2398 0.321564 CTTGCGAATGACAGGGACCA 60.322 55.0 0.0 0.0 0.0 4.02 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.990479 GGTGACTAGGCCACAGGG 59.010 66.667 5.01 0.00 36.31 4.45
96 97 4.891168 TCCATGAGCGTGGAATAGTAGTTA 59.109 41.667 8.92 0.00 45.03 2.24
100 101 7.095607 CCATGAGCGTGGAATAGTAGTTATTTC 60.096 40.741 2.49 0.00 42.02 2.17
101 102 7.108841 TGAGCGTGGAATAGTAGTTATTTCT 57.891 36.000 0.00 0.00 32.09 2.52
102 103 8.229253 TGAGCGTGGAATAGTAGTTATTTCTA 57.771 34.615 0.00 0.00 32.09 2.10
103 104 8.857098 TGAGCGTGGAATAGTAGTTATTTCTAT 58.143 33.333 0.00 0.00 32.09 1.98
104 105 9.130312 GAGCGTGGAATAGTAGTTATTTCTATG 57.870 37.037 0.00 0.00 32.09 2.23
105 106 7.599245 AGCGTGGAATAGTAGTTATTTCTATGC 59.401 37.037 0.00 0.00 32.09 3.14
106 107 7.148623 GCGTGGAATAGTAGTTATTTCTATGCC 60.149 40.741 0.00 0.00 39.25 4.40
107 108 7.061905 CGTGGAATAGTAGTTATTTCTATGCCG 59.938 40.741 0.00 0.00 40.79 5.69
108 109 7.871463 GTGGAATAGTAGTTATTTCTATGCCGT 59.129 37.037 0.00 0.00 40.79 5.68
109 110 8.426489 TGGAATAGTAGTTATTTCTATGCCGTT 58.574 33.333 0.00 0.00 40.79 4.44
110 111 8.923683 GGAATAGTAGTTATTTCTATGCCGTTC 58.076 37.037 0.00 0.00 32.33 3.95
111 112 8.516811 AATAGTAGTTATTTCTATGCCGTTCG 57.483 34.615 0.00 0.00 0.00 3.95
112 113 5.287226 AGTAGTTATTTCTATGCCGTTCGG 58.713 41.667 6.90 6.90 0.00 4.30
122 123 3.484547 CCGTTCGGCGTTGGCTAC 61.485 66.667 6.85 0.00 39.81 3.58
123 124 2.735478 CGTTCGGCGTTGGCTACA 60.735 61.111 6.85 0.00 39.81 2.74
124 125 2.858158 GTTCGGCGTTGGCTACAC 59.142 61.111 6.85 0.00 39.81 2.90
156 157 7.966111 AGATATTTCACACGCATTTAACGTAA 58.034 30.769 0.00 0.00 42.96 3.18
169 171 4.914312 TTAACGTAATGCCGTGAAAGAG 57.086 40.909 0.00 0.00 41.65 2.85
173 175 2.093783 CGTAATGCCGTGAAAGAGGAAC 59.906 50.000 0.00 0.00 0.00 3.62
197 199 1.638388 ATCAGTCCACATGCAACGCG 61.638 55.000 3.53 3.53 0.00 6.01
264 268 0.183971 TTCTTGGGAAGTTCGGCCAA 59.816 50.000 2.24 11.65 0.00 4.52
321 329 8.739972 TGATTGGTTATCTTCTTTCTTTTAGGC 58.260 33.333 0.00 0.00 34.17 3.93
322 330 8.650143 ATTGGTTATCTTCTTTCTTTTAGGCA 57.350 30.769 0.00 0.00 0.00 4.75
343 351 2.742372 CTGGTGGTGCGGTGTAGC 60.742 66.667 0.00 0.00 37.71 3.58
344 352 3.238497 TGGTGGTGCGGTGTAGCT 61.238 61.111 0.00 0.00 38.13 3.32
345 353 2.742372 GGTGGTGCGGTGTAGCTG 60.742 66.667 0.00 0.00 38.13 4.24
348 356 2.030562 GGTGCGGTGTAGCTGTGT 59.969 61.111 0.00 0.00 38.13 3.72
366 374 3.827898 GACTGGTCCGGCTCCGAG 61.828 72.222 10.28 1.57 42.83 4.63
577 606 6.651643 ACAAAGTACAGACCATGCGTAATAAA 59.348 34.615 0.00 0.00 0.00 1.40
579 608 7.859325 AAGTACAGACCATGCGTAATAAAAT 57.141 32.000 0.00 0.00 0.00 1.82
580 609 7.478520 AGTACAGACCATGCGTAATAAAATC 57.521 36.000 0.00 0.00 0.00 2.17
586 615 8.559536 CAGACCATGCGTAATAAAATCATTACT 58.440 33.333 4.91 0.00 38.63 2.24
587 616 9.120538 AGACCATGCGTAATAAAATCATTACTT 57.879 29.630 4.91 0.00 38.63 2.24
588 617 9.169468 GACCATGCGTAATAAAATCATTACTTG 57.831 33.333 4.91 1.34 38.63 3.16
591 620 8.957028 CATGCGTAATAAAATCATTACTTGGTG 58.043 33.333 4.91 0.00 38.63 4.17
592 621 6.970043 TGCGTAATAAAATCATTACTTGGTGC 59.030 34.615 4.91 1.93 38.63 5.01
593 622 7.148154 TGCGTAATAAAATCATTACTTGGTGCT 60.148 33.333 4.91 0.00 38.63 4.40
594 623 7.700656 GCGTAATAAAATCATTACTTGGTGCTT 59.299 33.333 4.91 0.00 38.63 3.91
713 792 1.011242 CACGCACACCAAACTCACG 60.011 57.895 0.00 0.00 0.00 4.35
714 793 2.177580 ACGCACACCAAACTCACGG 61.178 57.895 0.00 0.00 0.00 4.94
715 794 1.885388 CGCACACCAAACTCACGGA 60.885 57.895 0.00 0.00 0.00 4.69
716 795 1.433053 CGCACACCAAACTCACGGAA 61.433 55.000 0.00 0.00 0.00 4.30
717 796 0.028902 GCACACCAAACTCACGGAAC 59.971 55.000 0.00 0.00 0.00 3.62
770 862 0.956633 TATCGCCGACATACTGACCC 59.043 55.000 0.00 0.00 0.00 4.46
787 879 3.010420 GACCCAGAAAGGTGTCATTAGC 58.990 50.000 0.00 0.00 41.42 3.09
793 885 5.652014 CCAGAAAGGTGTCATTAGCCATTAA 59.348 40.000 0.00 0.00 0.00 1.40
839 932 4.204978 GCAACGAGAGAAAACACACATTTG 59.795 41.667 0.00 0.00 0.00 2.32
922 1017 3.695825 ACCCTCCCCCGTCCTCAT 61.696 66.667 0.00 0.00 0.00 2.90
946 1044 2.297315 CTCACTGACACTCCAAGCACTA 59.703 50.000 0.00 0.00 0.00 2.74
1125 1223 3.148084 CCGGCGGGGAAGACATAT 58.852 61.111 20.56 0.00 38.47 1.78
1796 1894 1.032014 GCGGTGGTATGATGGCATTT 58.968 50.000 0.00 0.00 35.94 2.32
1874 1972 2.743553 CATGGGGAGGAAGCATTTCTT 58.256 47.619 0.00 0.00 37.83 2.52
2013 2136 7.382218 TGTTGTTTTTAGGTAGAAGTACGTAGC 59.618 37.037 0.00 0.00 32.49 3.58
2016 2139 5.567138 TTTAGGTAGAAGTACGTAGCACC 57.433 43.478 0.00 0.00 32.49 5.01
2026 2149 1.153823 CGTAGCACCGCTAGCAGTT 60.154 57.895 16.45 4.52 42.11 3.16
2037 2160 3.002656 CCGCTAGCAGTTGGTGATTATTG 59.997 47.826 16.45 0.00 0.00 1.90
2038 2161 3.623060 CGCTAGCAGTTGGTGATTATTGT 59.377 43.478 16.45 0.00 0.00 2.71
2039 2162 4.808895 CGCTAGCAGTTGGTGATTATTGTA 59.191 41.667 16.45 0.00 0.00 2.41
2040 2163 5.466728 CGCTAGCAGTTGGTGATTATTGTAT 59.533 40.000 16.45 0.00 0.00 2.29
2041 2164 6.017934 CGCTAGCAGTTGGTGATTATTGTATT 60.018 38.462 16.45 0.00 0.00 1.89
2042 2165 7.467267 CGCTAGCAGTTGGTGATTATTGTATTT 60.467 37.037 16.45 0.00 0.00 1.40
2043 2166 8.190784 GCTAGCAGTTGGTGATTATTGTATTTT 58.809 33.333 10.63 0.00 0.00 1.82
2066 2189 5.957842 TTTTTGCGAGAGGTGATTATTGT 57.042 34.783 0.00 0.00 0.00 2.71
2102 2225 3.498018 TGGTCGACATGTCACTGAATTTG 59.502 43.478 24.93 6.00 0.00 2.32
2172 2296 6.452494 TTGGTAGTGCAAGTAGTATCTCTC 57.548 41.667 0.00 0.00 0.00 3.20
2203 2327 1.375908 GTGCAGTTGCCCGATCTGA 60.376 57.895 1.06 0.00 41.18 3.27
2269 2393 0.035630 GTGAGAAGCACCAGCCTCAT 60.036 55.000 0.00 0.00 39.89 2.90
2273 2398 2.368221 GAGAAGCACCAGCCTCATCTAT 59.632 50.000 0.00 0.00 43.56 1.98
2418 2544 9.793252 AAATGCAGTATGAAGTACAAATGAATC 57.207 29.630 0.00 0.00 39.69 2.52
2434 2560 9.287373 ACAAATGAATCTTTATGGTTTGCAATT 57.713 25.926 0.00 0.00 0.00 2.32
2437 2563 9.729281 AATGAATCTTTATGGTTTGCAATTTCT 57.271 25.926 0.00 0.00 0.00 2.52
2439 2565 9.638239 TGAATCTTTATGGTTTGCAATTTCTAC 57.362 29.630 0.00 0.00 0.00 2.59
2440 2566 9.860898 GAATCTTTATGGTTTGCAATTTCTACT 57.139 29.630 0.00 0.00 0.00 2.57
2447 2573 8.814038 ATGGTTTGCAATTTCTACTAATCTCT 57.186 30.769 0.00 0.00 0.00 3.10
2448 2574 8.635765 TGGTTTGCAATTTCTACTAATCTCTT 57.364 30.769 0.00 0.00 0.00 2.85
2449 2575 8.514594 TGGTTTGCAATTTCTACTAATCTCTTG 58.485 33.333 0.00 0.00 0.00 3.02
2450 2576 8.515414 GGTTTGCAATTTCTACTAATCTCTTGT 58.485 33.333 0.00 0.00 0.00 3.16
2451 2577 9.899226 GTTTGCAATTTCTACTAATCTCTTGTT 57.101 29.630 0.00 0.00 0.00 2.83
2454 2580 9.283768 TGCAATTTCTACTAATCTCTTGTTTCA 57.716 29.630 0.00 0.00 0.00 2.69
2491 2617 7.730364 ACTAATCAAACAACACACCTAGAAG 57.270 36.000 0.00 0.00 0.00 2.85
2574 2700 1.501169 CTTTGCCTTTTTCCCGCAAG 58.499 50.000 0.00 0.00 42.93 4.01
2665 2795 3.123620 GCACTGAGCAAGGAGGCG 61.124 66.667 0.00 0.00 44.79 5.52
2673 2803 0.250901 AGCAAGGAGGCGATTGTGTT 60.251 50.000 0.00 0.00 39.27 3.32
2686 2816 0.388659 TTGTGTTCCACATTGGCAGC 59.611 50.000 0.00 0.00 44.16 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 0.682209 TACGTCCCTGTGGCCTAGTC 60.682 60.000 3.32 0.00 0.00 2.59
32 33 1.708027 GCCTCGTGCATGTTACGTC 59.292 57.895 19.18 9.83 41.91 4.34
107 108 2.858158 GTGTAGCCAACGCCGAAC 59.142 61.111 0.00 0.00 34.57 3.95
108 109 2.735478 CGTGTAGCCAACGCCGAA 60.735 61.111 0.00 0.00 35.00 4.30
119 120 3.489785 GTGAAATATCTTCCGGCGTGTAG 59.510 47.826 6.01 0.82 0.00 2.74
120 121 3.119065 TGTGAAATATCTTCCGGCGTGTA 60.119 43.478 6.01 0.00 0.00 2.90
121 122 2.277084 GTGAAATATCTTCCGGCGTGT 58.723 47.619 6.01 0.00 0.00 4.49
122 123 2.030457 GTGTGAAATATCTTCCGGCGTG 59.970 50.000 6.01 0.00 0.00 5.34
123 124 2.277084 GTGTGAAATATCTTCCGGCGT 58.723 47.619 6.01 0.00 0.00 5.68
124 125 1.257936 CGTGTGAAATATCTTCCGGCG 59.742 52.381 0.00 0.00 0.00 6.46
156 157 2.270352 TTGTTCCTCTTTCACGGCAT 57.730 45.000 0.00 0.00 0.00 4.40
169 171 3.181493 GCATGTGGACTGATCATTGTTCC 60.181 47.826 0.00 0.87 0.00 3.62
173 175 3.729762 CGTTGCATGTGGACTGATCATTG 60.730 47.826 0.00 0.00 0.00 2.82
197 199 3.256558 GGGCTCATTTCATTGCAAGTTC 58.743 45.455 4.94 0.00 0.00 3.01
321 329 4.320456 ACCGCACCACCAGAGCTG 62.320 66.667 0.00 0.00 0.00 4.24
322 330 4.320456 CACCGCACCACCAGAGCT 62.320 66.667 0.00 0.00 0.00 4.09
343 351 2.357517 GCCGGACCAGTCACACAG 60.358 66.667 5.05 0.00 0.00 3.66
344 352 2.842462 AGCCGGACCAGTCACACA 60.842 61.111 5.05 0.00 0.00 3.72
345 353 2.048127 GAGCCGGACCAGTCACAC 60.048 66.667 5.05 0.00 0.00 3.82
348 356 4.671590 TCGGAGCCGGACCAGTCA 62.672 66.667 5.05 0.00 40.25 3.41
366 374 4.450122 CCATGCACGTGACAGCGC 62.450 66.667 22.23 0.00 34.88 5.92
367 375 2.606961 AACCATGCACGTGACAGCG 61.607 57.895 22.23 12.49 37.94 5.18
411 419 2.883253 GCAGAAGAGGCGCGAGTC 60.883 66.667 12.10 4.89 0.00 3.36
462 470 2.279918 GGACGCGGCCACGATATT 60.280 61.111 30.38 0.00 44.60 1.28
516 524 2.843701 CCACTCACTCACTTTGAAGCT 58.156 47.619 0.00 0.00 0.00 3.74
577 606 5.488341 ACGTAGAAGCACCAAGTAATGATT 58.512 37.500 0.00 0.00 0.00 2.57
579 608 4.219944 AGACGTAGAAGCACCAAGTAATGA 59.780 41.667 0.00 0.00 0.00 2.57
580 609 4.495422 AGACGTAGAAGCACCAAGTAATG 58.505 43.478 0.00 0.00 0.00 1.90
586 615 2.626266 TCTGAAGACGTAGAAGCACCAA 59.374 45.455 0.00 0.00 0.00 3.67
587 616 2.235891 TCTGAAGACGTAGAAGCACCA 58.764 47.619 0.00 0.00 0.00 4.17
588 617 3.299340 TTCTGAAGACGTAGAAGCACC 57.701 47.619 0.00 0.00 0.00 5.01
591 620 5.345202 TCGAAATTTCTGAAGACGTAGAAGC 59.655 40.000 15.92 0.00 34.68 3.86
592 621 6.453134 GCTCGAAATTTCTGAAGACGTAGAAG 60.453 42.308 15.92 0.00 34.68 2.85
593 622 5.345202 GCTCGAAATTTCTGAAGACGTAGAA 59.655 40.000 15.92 0.00 0.00 2.10
594 623 4.857588 GCTCGAAATTTCTGAAGACGTAGA 59.142 41.667 15.92 1.51 0.00 2.59
689 768 1.746991 TTTGGTGTGCGTGTGCTGA 60.747 52.632 0.00 0.00 43.34 4.26
770 862 6.150976 TGTTAATGGCTAATGACACCTTTCTG 59.849 38.462 0.00 0.00 31.68 3.02
787 879 5.949354 TCTGGATTTGGTTAGGTGTTAATGG 59.051 40.000 0.00 0.00 0.00 3.16
793 885 2.986728 AGGTCTGGATTTGGTTAGGTGT 59.013 45.455 0.00 0.00 0.00 4.16
839 932 4.149598 AGATTTTAGGTGGGTTTGTGGTC 58.850 43.478 0.00 0.00 0.00 4.02
922 1017 1.342074 CTTGGAGTGTCAGTGAGGGA 58.658 55.000 0.00 0.00 0.00 4.20
946 1044 4.400961 GAGGCCTTGGAGCGTGCT 62.401 66.667 6.77 0.00 0.00 4.40
998 1096 0.979665 CATCGTGGAGGAGGCCATAT 59.020 55.000 5.01 0.00 40.68 1.78
1025 1123 1.381056 AGCAGGAGGAGAGCGATGT 60.381 57.895 0.00 0.00 0.00 3.06
1032 1130 1.309347 CAGGAGGAGCAGGAGGAGA 59.691 63.158 0.00 0.00 0.00 3.71
1035 1133 3.478274 GCCAGGAGGAGCAGGAGG 61.478 72.222 0.00 0.00 36.89 4.30
1122 1220 0.179045 GGTCCTCGCACTTGGCATAT 60.179 55.000 0.00 0.00 45.17 1.78
1125 1223 3.240134 GAGGTCCTCGCACTTGGCA 62.240 63.158 2.28 0.00 45.17 4.92
1332 1430 1.473677 CCGGTGATGTTGTACGTCCTA 59.526 52.381 0.00 0.00 33.27 2.94
1563 1661 0.892063 AGAGGACGAGCTTGGACTTC 59.108 55.000 5.79 5.31 0.00 3.01
1782 1880 1.615392 GCCAGGAAATGCCATCATACC 59.385 52.381 0.00 0.00 40.02 2.73
1796 1894 2.355986 ATTCGTGCTACCGCCAGGA 61.356 57.895 0.00 0.00 41.02 3.86
2013 2136 3.566261 CACCAACTGCTAGCGGTG 58.434 61.111 29.39 24.41 42.72 4.94
2016 2139 3.623060 ACAATAATCACCAACTGCTAGCG 59.377 43.478 10.77 7.61 0.00 4.26
2044 2167 5.957842 ACAATAATCACCTCTCGCAAAAA 57.042 34.783 0.00 0.00 0.00 1.94
2045 2168 6.170506 ACTACAATAATCACCTCTCGCAAAA 58.829 36.000 0.00 0.00 0.00 2.44
2046 2169 5.730550 ACTACAATAATCACCTCTCGCAAA 58.269 37.500 0.00 0.00 0.00 3.68
2047 2170 5.339008 ACTACAATAATCACCTCTCGCAA 57.661 39.130 0.00 0.00 0.00 4.85
2048 2171 5.593095 ACTACTACAATAATCACCTCTCGCA 59.407 40.000 0.00 0.00 0.00 5.10
2049 2172 6.074544 ACTACTACAATAATCACCTCTCGC 57.925 41.667 0.00 0.00 0.00 5.03
2050 2173 8.380743 AGTACTACTACAATAATCACCTCTCG 57.619 38.462 0.00 0.00 0.00 4.04
2060 2183 9.394767 TCGACCACAATAGTACTACTACAATAA 57.605 33.333 4.31 0.00 32.84 1.40
2061 2184 8.830580 GTCGACCACAATAGTACTACTACAATA 58.169 37.037 4.31 0.00 32.84 1.90
2062 2185 7.337689 TGTCGACCACAATAGTACTACTACAAT 59.662 37.037 14.12 0.00 32.84 2.71
2063 2186 6.654582 TGTCGACCACAATAGTACTACTACAA 59.345 38.462 14.12 0.00 32.84 2.41
2064 2187 6.172630 TGTCGACCACAATAGTACTACTACA 58.827 40.000 14.12 0.00 32.84 2.74
2065 2188 6.668541 TGTCGACCACAATAGTACTACTAC 57.331 41.667 14.12 0.00 32.84 2.73
2066 2189 6.825213 ACATGTCGACCACAATAGTACTACTA 59.175 38.462 14.12 0.00 38.97 1.82
2067 2190 5.651139 ACATGTCGACCACAATAGTACTACT 59.349 40.000 14.12 0.00 38.97 2.57
2124 2248 9.729281 AAACATTTGCTCCTTTGATGATAAAAT 57.271 25.926 0.00 0.00 0.00 1.82
2136 2260 3.005791 GCACTACCAAACATTTGCTCCTT 59.994 43.478 0.00 0.00 36.86 3.36
2203 2327 3.243101 CGAATCAGCGTGTATCACTAGGT 60.243 47.826 0.00 0.00 31.34 3.08
2265 2389 4.560311 CGAATGACAGGGACCATAGATGAG 60.560 50.000 0.00 0.00 0.00 2.90
2269 2393 1.412710 GCGAATGACAGGGACCATAGA 59.587 52.381 0.00 0.00 0.00 1.98
2273 2398 0.321564 CTTGCGAATGACAGGGACCA 60.322 55.000 0.00 0.00 0.00 4.02
2322 2447 6.018751 GTGTACATGACATTCTAATGCGTGAT 60.019 38.462 18.04 10.07 41.14 3.06
2328 2453 9.712359 CAATCAAGTGTACATGACATTCTAATG 57.288 33.333 0.00 1.13 41.14 1.90
2459 2585 9.744468 GGTGTGTTGTTTGATTAGTAGAATTTT 57.256 29.630 0.00 0.00 0.00 1.82
2460 2586 9.131791 AGGTGTGTTGTTTGATTAGTAGAATTT 57.868 29.630 0.00 0.00 0.00 1.82
2461 2587 8.691661 AGGTGTGTTGTTTGATTAGTAGAATT 57.308 30.769 0.00 0.00 0.00 2.17
2462 2588 9.436957 CTAGGTGTGTTGTTTGATTAGTAGAAT 57.563 33.333 0.00 0.00 0.00 2.40
2497 2623 4.047166 TGGAGGATTCACACCCTTATGAT 58.953 43.478 0.00 0.00 31.84 2.45
2601 2729 6.038356 GTGTAATGAAAATGATGCCCTTCAG 58.962 40.000 0.00 0.00 31.70 3.02
2673 2803 0.328926 TGATGAGCTGCCAATGTGGA 59.671 50.000 0.00 0.00 40.96 4.02
2686 2816 4.841422 AGACAGAAATCCCTGTTGATGAG 58.159 43.478 0.00 0.00 46.45 2.90
2755 2892 3.775654 GGGTCTCGGGCTGGACTG 61.776 72.222 12.62 0.00 33.46 3.51



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.