Multiple sequence alignment - TraesCS7D01G253500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G253500 chr7D 100.000 4857 0 0 1 4857 229893567 229888711 0.000000e+00 8970.0
1 TraesCS7D01G253500 chr7D 85.842 671 51 18 4224 4857 18444923 18444260 0.000000e+00 673.0
2 TraesCS7D01G253500 chr7D 82.199 191 25 6 692 882 39094150 39093969 6.510000e-34 156.0
3 TraesCS7D01G253500 chr7D 84.348 115 4 3 4224 4324 195633690 195633576 3.090000e-17 100.0
4 TraesCS7D01G253500 chr7D 93.333 60 4 0 3726 3785 229889809 229889750 6.700000e-14 89.8
5 TraesCS7D01G253500 chr7D 93.333 60 4 0 3759 3818 229889842 229889783 6.700000e-14 89.8
6 TraesCS7D01G253500 chr7A 92.074 3066 133 39 948 3990 241801372 241798394 0.000000e+00 4215.0
7 TraesCS7D01G253500 chr7A 82.321 741 95 19 1 708 241802973 241802236 1.160000e-170 610.0
8 TraesCS7D01G253500 chr7A 83.229 638 65 21 2294 2918 705887321 705887929 9.190000e-152 547.0
9 TraesCS7D01G253500 chr7A 84.865 185 17 2 4683 4857 615355093 615354910 5.000000e-40 176.0
10 TraesCS7D01G253500 chr7A 89.764 127 12 1 692 818 39068318 39068193 1.400000e-35 161.0
11 TraesCS7D01G253500 chr7A 81.579 190 25 7 693 882 25361016 25360837 1.090000e-31 148.0
12 TraesCS7D01G253500 chr7B 90.321 2614 141 36 1 2519 200898935 200896339 0.000000e+00 3323.0
13 TraesCS7D01G253500 chr7B 87.213 1001 69 28 3038 4006 200895915 200894942 0.000000e+00 1085.0
14 TraesCS7D01G253500 chr7B 96.757 185 6 0 2855 3039 200896337 200896153 4.720000e-80 309.0
15 TraesCS7D01G253500 chr4B 89.661 590 37 16 3005 3573 668731561 668730975 0.000000e+00 730.0
16 TraesCS7D01G253500 chr4B 83.208 667 70 19 4210 4845 307892556 307893211 1.520000e-159 573.0
17 TraesCS7D01G253500 chr4B 83.540 644 69 14 4247 4857 95220582 95219943 7.050000e-158 568.0
18 TraesCS7D01G253500 chr4B 87.086 302 22 8 4224 4509 106030767 106030467 4.690000e-85 326.0
19 TraesCS7D01G253500 chr4B 84.337 249 19 7 4619 4857 501180923 501180685 4.890000e-55 226.0
20 TraesCS7D01G253500 chr4B 88.021 192 13 5 3554 3741 668730905 668730720 8.180000e-53 219.0
21 TraesCS7D01G253500 chr4B 82.514 183 23 7 697 879 599688892 599688719 8.420000e-33 152.0
22 TraesCS7D01G253500 chr4B 90.698 86 8 0 4595 4680 106030420 106030335 1.100000e-21 115.0
23 TraesCS7D01G253500 chr4A 84.718 674 57 20 4221 4856 368566862 368567527 2.470000e-177 632.0
24 TraesCS7D01G253500 chr4A 82.199 191 25 6 692 882 644036116 644035935 6.510000e-34 156.0
25 TraesCS7D01G253500 chr6D 84.402 686 57 20 2246 2918 469556625 469555977 3.190000e-176 628.0
26 TraesCS7D01G253500 chr6D 82.682 179 23 7 39 214 127482983 127483156 8.420000e-33 152.0
27 TraesCS7D01G253500 chr6D 95.181 83 4 0 2960 3042 469555972 469555890 1.100000e-26 132.0
28 TraesCS7D01G253500 chr3B 83.885 695 65 20 2243 2918 73669845 73670511 1.920000e-173 619.0
29 TraesCS7D01G253500 chr3B 79.184 245 31 11 636 878 8128544 8128318 8.420000e-33 152.0
30 TraesCS7D01G253500 chr3B 95.181 83 4 0 2960 3042 73670516 73670598 1.100000e-26 132.0
31 TraesCS7D01G253500 chr6A 83.164 689 64 21 2243 2918 412401496 412402145 2.520000e-162 582.0
32 TraesCS7D01G253500 chr6A 82.629 639 67 21 2294 2918 570521708 570522316 4.310000e-145 525.0
33 TraesCS7D01G253500 chr6A 93.976 83 5 0 2960 3042 412402150 412402232 5.100000e-25 126.0
34 TraesCS7D01G253500 chr2A 83.229 638 65 21 2294 2918 133337771 133338379 9.190000e-152 547.0
35 TraesCS7D01G253500 chr2A 93.103 87 5 1 2960 3046 778728489 778728404 5.100000e-25 126.0
36 TraesCS7D01G253500 chr2A 80.435 92 18 0 591 682 63612644 63612553 2.430000e-08 71.3
37 TraesCS7D01G253500 chr3A 83.072 638 66 21 2294 2918 718944145 718944753 4.280000e-150 542.0
38 TraesCS7D01G253500 chr3A 85.714 308 26 9 4213 4504 432306497 432306192 4.720000e-80 309.0
39 TraesCS7D01G253500 chr5A 80.882 680 81 22 4221 4857 647648577 647649250 1.570000e-134 490.0
40 TraesCS7D01G253500 chr1B 81.997 611 62 27 2246 2842 533431500 533430924 4.400000e-130 475.0
41 TraesCS7D01G253500 chr1B 93.976 83 5 0 2960 3042 533430868 533430786 5.100000e-25 126.0
42 TraesCS7D01G253500 chr4D 87.789 303 19 12 2763 3047 6147741 6148043 6.020000e-89 339.0
43 TraesCS7D01G253500 chr4D 83.186 226 31 6 31 249 386159581 386159356 2.960000e-47 200.0
44 TraesCS7D01G253500 chr4D 85.535 159 21 2 39 196 381137438 381137281 1.080000e-36 165.0
45 TraesCS7D01G253500 chr3D 80.508 472 49 20 4410 4857 614275622 614276074 6.060000e-84 322.0
46 TraesCS7D01G253500 chr5D 80.781 333 60 4 487 818 444299383 444299712 1.730000e-64 257.0
47 TraesCS7D01G253500 chr5D 87.222 180 17 6 39 214 242628682 242628505 2.960000e-47 200.0
48 TraesCS7D01G253500 chr5D 80.120 166 32 1 517 682 277135851 277135687 6.600000e-24 122.0
49 TraesCS7D01G253500 chr5B 88.333 180 15 6 39 214 255969286 255969463 1.370000e-50 211.0
50 TraesCS7D01G253500 chr2B 86.243 189 15 2 4679 4857 657466585 657466398 1.380000e-45 195.0
51 TraesCS7D01G253500 chr2B 75.691 362 67 18 471 817 716199305 716199660 1.400000e-35 161.0
52 TraesCS7D01G253500 chr2B 83.929 168 26 1 30 196 717936014 717936181 5.030000e-35 159.0
53 TraesCS7D01G253500 chr2D 83.041 171 24 5 47 215 425996817 425996984 3.030000e-32 150.0
54 TraesCS7D01G253500 chr1D 87.156 109 12 1 4749 4857 33951546 33951652 6.600000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G253500 chr7D 229888711 229893567 4856 True 3049.866667 8970 95.555333 1 4857 3 chr7D.!!$R4 4856
1 TraesCS7D01G253500 chr7D 18444260 18444923 663 True 673.000000 673 85.842000 4224 4857 1 chr7D.!!$R1 633
2 TraesCS7D01G253500 chr7A 241798394 241802973 4579 True 2412.500000 4215 87.197500 1 3990 2 chr7A.!!$R4 3989
3 TraesCS7D01G253500 chr7A 705887321 705887929 608 False 547.000000 547 83.229000 2294 2918 1 chr7A.!!$F1 624
4 TraesCS7D01G253500 chr7B 200894942 200898935 3993 True 1572.333333 3323 91.430333 1 4006 3 chr7B.!!$R1 4005
5 TraesCS7D01G253500 chr4B 307892556 307893211 655 False 573.000000 573 83.208000 4210 4845 1 chr4B.!!$F1 635
6 TraesCS7D01G253500 chr4B 95219943 95220582 639 True 568.000000 568 83.540000 4247 4857 1 chr4B.!!$R1 610
7 TraesCS7D01G253500 chr4B 668730720 668731561 841 True 474.500000 730 88.841000 3005 3741 2 chr4B.!!$R5 736
8 TraesCS7D01G253500 chr4A 368566862 368567527 665 False 632.000000 632 84.718000 4221 4856 1 chr4A.!!$F1 635
9 TraesCS7D01G253500 chr6D 469555890 469556625 735 True 380.000000 628 89.791500 2246 3042 2 chr6D.!!$R1 796
10 TraesCS7D01G253500 chr3B 73669845 73670598 753 False 375.500000 619 89.533000 2243 3042 2 chr3B.!!$F1 799
11 TraesCS7D01G253500 chr6A 570521708 570522316 608 False 525.000000 525 82.629000 2294 2918 1 chr6A.!!$F1 624
12 TraesCS7D01G253500 chr6A 412401496 412402232 736 False 354.000000 582 88.570000 2243 3042 2 chr6A.!!$F2 799
13 TraesCS7D01G253500 chr2A 133337771 133338379 608 False 547.000000 547 83.229000 2294 2918 1 chr2A.!!$F1 624
14 TraesCS7D01G253500 chr3A 718944145 718944753 608 False 542.000000 542 83.072000 2294 2918 1 chr3A.!!$F1 624
15 TraesCS7D01G253500 chr5A 647648577 647649250 673 False 490.000000 490 80.882000 4221 4857 1 chr5A.!!$F1 636
16 TraesCS7D01G253500 chr1B 533430786 533431500 714 True 300.500000 475 87.986500 2246 3042 2 chr1B.!!$R1 796

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
100 103 0.109781 CATCACGAGGGCCAAAAACG 60.110 55.0 6.18 5.93 0.0 3.60 F
1097 1846 0.236449 CGACGCCAAACTAACCAACC 59.764 55.0 0.00 0.00 0.0 3.77 F
2324 3111 0.976641 TGTCCGTTGCCTCTGAATCT 59.023 50.0 0.00 0.00 0.0 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1527 2276 0.176449 GAAGATGTTGCCCCCATTGC 59.824 55.0 0.0 0.0 0.00 3.56 R
2777 3585 0.034670 AGCCTGGTGAATTGGAGAGC 60.035 55.0 0.0 0.0 0.00 4.09 R
3865 5054 0.107410 AAACCACACTGCGGTCAGAA 60.107 50.0 0.0 0.0 42.95 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 94 8.888579 AATAAATAACTTCTACATCACGAGGG 57.111 34.615 0.00 0.00 0.00 4.30
100 103 0.109781 CATCACGAGGGCCAAAAACG 60.110 55.000 6.18 5.93 0.00 3.60
125 128 5.981174 TGCTTCAACAGATGATGTAGATGA 58.019 37.500 1.76 0.00 43.00 2.92
129 132 7.695618 GCTTCAACAGATGATGTAGATGAAAAC 59.304 37.037 1.76 0.00 43.00 2.43
135 142 9.850628 ACAGATGATGTAGATGAAAACAAATTG 57.149 29.630 0.00 0.00 41.60 2.32
150 157 5.972107 ACAAATTGAATCACCTCCTTCAG 57.028 39.130 0.00 0.00 33.25 3.02
202 209 6.563222 CAAATTTGCATTTCCACTTTCCAT 57.437 33.333 5.01 0.00 29.41 3.41
220 227 5.497464 TCCATGTGATGTAAAACTCCAGA 57.503 39.130 0.00 0.00 0.00 3.86
225 232 3.123621 GTGATGTAAAACTCCAGACGCAG 59.876 47.826 0.00 0.00 0.00 5.18
227 234 1.689813 TGTAAAACTCCAGACGCAGGA 59.310 47.619 0.00 0.00 0.00 3.86
239 246 2.194597 GCAGGACAACCACCACCA 59.805 61.111 0.00 0.00 38.94 4.17
257 264 2.171003 CCACTTCATTTCAGTTCCCCC 58.829 52.381 0.00 0.00 0.00 5.40
259 266 3.010138 CCACTTCATTTCAGTTCCCCCTA 59.990 47.826 0.00 0.00 0.00 3.53
269 276 2.780010 CAGTTCCCCCTATCTGTCCATT 59.220 50.000 0.00 0.00 0.00 3.16
295 302 2.375345 CCGCCAGTTATCCCCACCT 61.375 63.158 0.00 0.00 0.00 4.00
429 470 4.307502 TTGCCGGCCCCCAAATCA 62.308 61.111 26.77 0.00 0.00 2.57
500 554 1.135746 CGCTAAACTCGACCTTCTCGT 60.136 52.381 0.00 0.00 43.45 4.18
540 595 4.513519 CGACCAATCGGCTGCTTA 57.486 55.556 0.00 0.00 44.99 3.09
548 603 3.488047 CCAATCGGCTGCTTAATTCACAG 60.488 47.826 0.00 0.00 34.48 3.66
554 609 0.953471 TGCTTAATTCACAGCCGCGT 60.953 50.000 4.92 0.00 34.91 6.01
574 629 4.207281 TCGGCCATTCGAGCTCCG 62.207 66.667 8.47 4.63 41.30 4.63
597 652 4.473520 CGCATTCAGCCTCCCGGT 62.474 66.667 0.00 0.00 41.38 5.28
609 664 2.278857 CCCGGTTCTCATCGCTCG 60.279 66.667 0.00 0.00 0.00 5.03
614 669 3.449227 TTCTCATCGCTCGGCCGT 61.449 61.111 27.15 1.01 0.00 5.68
739 1228 3.685139 TCTGTTGGAGTAGGAGCTTTG 57.315 47.619 0.00 0.00 0.00 2.77
766 1255 6.587273 TCACCAAATATACATCATCCGTTGA 58.413 36.000 0.00 0.00 39.12 3.18
772 1261 8.397906 CAAATATACATCATCCGTTGAAGTTGT 58.602 33.333 0.00 0.00 37.46 3.32
774 1263 2.813754 ACATCATCCGTTGAAGTTGTGG 59.186 45.455 0.00 0.00 38.03 4.17
856 1345 7.933033 ACACCCACTTTTACGTCTCTAAATTTA 59.067 33.333 0.00 0.00 0.00 1.40
903 1392 4.309933 GCATGGCTCTTGCTAAAGTTTTT 58.690 39.130 0.00 0.00 39.59 1.94
946 1435 0.800012 GATCCAAAGCCAACGCGTTA 59.200 50.000 26.11 6.74 41.18 3.18
1010 1751 8.747538 AGTGACACTAGACCAATTTAAAAAGT 57.252 30.769 6.24 0.00 0.00 2.66
1011 1752 8.621286 AGTGACACTAGACCAATTTAAAAAGTG 58.379 33.333 6.24 0.00 39.14 3.16
1012 1753 8.617809 GTGACACTAGACCAATTTAAAAAGTGA 58.382 33.333 11.83 0.00 36.17 3.41
1013 1754 8.617809 TGACACTAGACCAATTTAAAAAGTGAC 58.382 33.333 11.83 7.73 36.17 3.67
1014 1755 8.514330 ACACTAGACCAATTTAAAAAGTGACA 57.486 30.769 11.83 0.00 36.17 3.58
1015 1756 8.962679 ACACTAGACCAATTTAAAAAGTGACAA 58.037 29.630 11.83 0.00 36.17 3.18
1016 1757 9.796120 CACTAGACCAATTTAAAAAGTGACAAA 57.204 29.630 4.57 0.00 36.17 2.83
1096 1845 0.939419 ACGACGCCAAACTAACCAAC 59.061 50.000 0.00 0.00 0.00 3.77
1097 1846 0.236449 CGACGCCAAACTAACCAACC 59.764 55.000 0.00 0.00 0.00 3.77
1098 1847 1.310904 GACGCCAAACTAACCAACCA 58.689 50.000 0.00 0.00 0.00 3.67
1099 1848 1.677052 GACGCCAAACTAACCAACCAA 59.323 47.619 0.00 0.00 0.00 3.67
1222 1971 3.386237 AGCTTCTTCCTCGCGCCT 61.386 61.111 0.00 0.00 0.00 5.52
1282 2031 2.356553 TCGGCGGTCACCTTTTCG 60.357 61.111 7.21 0.00 0.00 3.46
2321 3108 1.593196 CTTTGTCCGTTGCCTCTGAA 58.407 50.000 0.00 0.00 0.00 3.02
2322 3109 2.154462 CTTTGTCCGTTGCCTCTGAAT 58.846 47.619 0.00 0.00 0.00 2.57
2323 3110 1.808411 TTGTCCGTTGCCTCTGAATC 58.192 50.000 0.00 0.00 0.00 2.52
2324 3111 0.976641 TGTCCGTTGCCTCTGAATCT 59.023 50.000 0.00 0.00 0.00 2.40
2325 3112 1.338105 TGTCCGTTGCCTCTGAATCTG 60.338 52.381 0.00 0.00 0.00 2.90
2328 3115 1.938577 CCGTTGCCTCTGAATCTGATG 59.061 52.381 0.00 0.00 0.00 3.07
2572 3365 7.201478 CGAAAGCTTATCCTGTCTTCTTTGTAG 60.201 40.741 0.00 0.00 0.00 2.74
2573 3366 6.613153 AGCTTATCCTGTCTTCTTTGTAGT 57.387 37.500 0.00 0.00 0.00 2.73
2574 3367 7.010339 AGCTTATCCTGTCTTCTTTGTAGTT 57.990 36.000 0.00 0.00 0.00 2.24
2575 3368 7.454225 AGCTTATCCTGTCTTCTTTGTAGTTT 58.546 34.615 0.00 0.00 0.00 2.66
2576 3369 7.389053 AGCTTATCCTGTCTTCTTTGTAGTTTG 59.611 37.037 0.00 0.00 0.00 2.93
2577 3370 7.173390 GCTTATCCTGTCTTCTTTGTAGTTTGT 59.827 37.037 0.00 0.00 0.00 2.83
2578 3371 9.706691 CTTATCCTGTCTTCTTTGTAGTTTGTA 57.293 33.333 0.00 0.00 0.00 2.41
2579 3372 7.964604 ATCCTGTCTTCTTTGTAGTTTGTAC 57.035 36.000 0.00 0.00 0.00 2.90
2580 3373 7.120923 TCCTGTCTTCTTTGTAGTTTGTACT 57.879 36.000 0.00 0.00 38.44 2.73
2581 3374 8.241497 TCCTGTCTTCTTTGTAGTTTGTACTA 57.759 34.615 0.00 0.00 35.78 1.82
2652 3446 5.405935 TTTCTGAGATTCTTGATCGACCA 57.594 39.130 0.00 0.00 39.85 4.02
2672 3466 6.987992 CGACCAAGTAGATACTTCTAGAGACT 59.012 42.308 2.24 0.00 44.19 3.24
2755 3550 7.898725 GTGCACTTCACATTTATATTAGCAC 57.101 36.000 10.32 0.00 44.98 4.40
2756 3551 7.697691 GTGCACTTCACATTTATATTAGCACT 58.302 34.615 10.32 0.00 44.98 4.40
2764 3559 7.657354 TCACATTTATATTAGCACTAGCACTGG 59.343 37.037 0.00 0.00 45.49 4.00
2777 3585 6.587990 GCACTAGCACTGGTCATATTAGTATG 59.412 42.308 0.00 0.00 41.58 2.39
2904 3719 7.055667 TCTGAAGCTTATTATCTCATCGGTT 57.944 36.000 0.00 0.00 0.00 4.44
2987 3802 0.979665 TCCAGTTCTCCAGGCTTGAG 59.020 55.000 9.25 9.25 0.00 3.02
3055 4109 8.641498 AATTGATTAGACACTTTTGGAGACAT 57.359 30.769 0.00 0.00 42.32 3.06
3093 4147 1.328680 GCTTATGGTCTCATGTGCACG 59.671 52.381 13.13 0.00 35.01 5.34
3142 4196 3.063997 GCATCCTTGACATACTTGAACCG 59.936 47.826 0.00 0.00 0.00 4.44
3146 4200 4.712829 TCCTTGACATACTTGAACCGGATA 59.287 41.667 9.46 0.00 0.00 2.59
3147 4201 5.050490 CCTTGACATACTTGAACCGGATAG 58.950 45.833 9.46 1.52 0.00 2.08
3155 4209 7.333672 ACATACTTGAACCGGATAGTTTCTTTC 59.666 37.037 9.46 0.00 0.00 2.62
3298 4352 5.417811 AGTAGATGTCTGCAGAACATTCAG 58.582 41.667 20.19 0.00 0.00 3.02
3355 4421 4.893524 ACAGTTTCCTTAGTTTCTTTGGGG 59.106 41.667 0.00 0.00 0.00 4.96
3356 4422 3.895656 AGTTTCCTTAGTTTCTTTGGGGC 59.104 43.478 0.00 0.00 0.00 5.80
3380 4447 7.773690 GGCTCCTACTTTCATTTTGGTAATCTA 59.226 37.037 0.00 0.00 0.00 1.98
3605 4785 0.176680 ATTGCTCCGTACTGGCAGAG 59.823 55.000 23.66 9.02 37.28 3.35
3606 4786 1.185618 TTGCTCCGTACTGGCAGAGT 61.186 55.000 23.66 2.48 37.28 3.24
3607 4787 1.139947 GCTCCGTACTGGCAGAGTC 59.860 63.158 23.66 9.64 35.96 3.36
3608 4788 1.316706 GCTCCGTACTGGCAGAGTCT 61.317 60.000 23.66 0.12 35.96 3.24
3609 4789 0.736053 CTCCGTACTGGCAGAGTCTC 59.264 60.000 23.66 5.41 35.96 3.36
3642 4822 4.083271 GCTTTCCACTCGACTAGCAATTTT 60.083 41.667 0.00 0.00 31.56 1.82
3643 4823 5.356882 TTTCCACTCGACTAGCAATTTTG 57.643 39.130 0.00 0.00 0.00 2.44
3665 4846 0.968405 GTGCCTGGCCTGATTTTTGA 59.032 50.000 17.53 0.00 0.00 2.69
3707 4888 4.749245 TTGCTTAAGAAAGTGCTACTGC 57.251 40.909 6.67 0.00 34.99 4.40
3715 4896 4.082845 AGAAAGTGCTACTGCTAGAGTGA 58.917 43.478 0.00 0.00 40.48 3.41
3728 4909 7.790027 ACTGCTAGAGTGAAATTCATCATAGT 58.210 34.615 0.00 0.00 31.75 2.12
3731 4912 9.534565 TGCTAGAGTGAAATTCATCATAGTAAC 57.465 33.333 0.00 0.00 0.00 2.50
3765 4952 8.076178 GTCAGTTGTATGCAGTTTTTAGTCATT 58.924 33.333 0.00 0.00 0.00 2.57
3771 4958 8.629158 TGTATGCAGTTTTTAGTCATTGAACTT 58.371 29.630 0.00 0.00 0.00 2.66
3772 4959 7.935338 ATGCAGTTTTTAGTCATTGAACTTG 57.065 32.000 0.00 0.00 0.00 3.16
3773 4960 6.862209 TGCAGTTTTTAGTCATTGAACTTGT 58.138 32.000 0.00 0.00 0.00 3.16
3774 4961 6.972328 TGCAGTTTTTAGTCATTGAACTTGTC 59.028 34.615 0.00 0.00 0.00 3.18
3776 4963 7.166473 GCAGTTTTTAGTCATTGAACTTGTCAG 59.834 37.037 0.00 0.00 37.61 3.51
3777 4964 8.184192 CAGTTTTTAGTCATTGAACTTGTCAGT 58.816 33.333 0.00 0.00 37.61 3.41
3778 4965 8.739972 AGTTTTTAGTCATTGAACTTGTCAGTT 58.260 29.630 0.00 0.00 46.64 3.16
3780 4967 7.624360 TTTAGTCATTGAACTTGTCAGTTGT 57.376 32.000 0.00 0.00 43.79 3.32
3781 4968 8.725405 TTTAGTCATTGAACTTGTCAGTTGTA 57.275 30.769 0.00 0.00 43.79 2.41
3782 4969 8.902540 TTAGTCATTGAACTTGTCAGTTGTAT 57.097 30.769 0.00 0.00 43.79 2.29
3783 4970 7.194607 AGTCATTGAACTTGTCAGTTGTATG 57.805 36.000 0.00 0.00 43.79 2.39
3784 4971 5.853282 GTCATTGAACTTGTCAGTTGTATGC 59.147 40.000 0.00 0.00 43.79 3.14
3785 4972 5.530543 TCATTGAACTTGTCAGTTGTATGCA 59.469 36.000 0.00 0.00 43.79 3.96
3788 4975 4.881273 TGAACTTGTCAGTTGTATGCAGTT 59.119 37.500 0.00 0.00 43.79 3.16
3789 4976 5.356751 TGAACTTGTCAGTTGTATGCAGTTT 59.643 36.000 0.00 0.00 43.79 2.66
3790 4977 5.835113 ACTTGTCAGTTGTATGCAGTTTT 57.165 34.783 0.00 0.00 0.00 2.43
3794 4981 6.935741 TGTCAGTTGTATGCAGTTTTTAGT 57.064 33.333 0.00 0.00 0.00 2.24
3795 4982 6.954944 TGTCAGTTGTATGCAGTTTTTAGTC 58.045 36.000 0.00 0.00 0.00 2.59
3796 4983 6.540551 TGTCAGTTGTATGCAGTTTTTAGTCA 59.459 34.615 0.00 0.00 0.00 3.41
3797 4984 6.851330 GTCAGTTGTATGCAGTTTTTAGTCAC 59.149 38.462 0.00 0.00 0.00 3.67
3798 4985 6.765989 TCAGTTGTATGCAGTTTTTAGTCACT 59.234 34.615 0.00 0.00 0.00 3.41
3806 4993 5.235305 CAGTTTTTAGTCACTGCACTTGT 57.765 39.130 0.00 0.00 34.33 3.16
3807 4994 5.266242 CAGTTTTTAGTCACTGCACTTGTC 58.734 41.667 0.00 0.00 34.33 3.18
3808 4995 4.941263 AGTTTTTAGTCACTGCACTTGTCA 59.059 37.500 0.00 0.00 0.00 3.58
3809 4996 5.065218 AGTTTTTAGTCACTGCACTTGTCAG 59.935 40.000 0.00 0.00 37.56 3.51
3810 4997 3.819564 TTAGTCACTGCACTTGTCAGT 57.180 42.857 0.00 0.00 44.87 3.41
3811 4998 2.698855 AGTCACTGCACTTGTCAGTT 57.301 45.000 4.26 0.00 42.38 3.16
3812 4999 2.283298 AGTCACTGCACTTGTCAGTTG 58.717 47.619 4.26 2.41 42.38 3.16
3813 5000 2.009774 GTCACTGCACTTGTCAGTTGT 58.990 47.619 4.26 0.00 42.38 3.32
3814 5001 3.118775 AGTCACTGCACTTGTCAGTTGTA 60.119 43.478 4.26 0.00 42.38 2.41
3836 5023 1.741770 CCAGTCAGCTACGGTTGGC 60.742 63.158 0.00 0.00 0.00 4.52
3837 5024 1.293498 CAGTCAGCTACGGTTGGCT 59.707 57.895 0.00 3.10 39.12 4.75
3864 5053 8.529756 GTTTTCGATGGAGACGTATTAAATTG 57.470 34.615 0.00 0.00 0.00 2.32
3865 5054 7.837202 TTTCGATGGAGACGTATTAAATTGT 57.163 32.000 0.00 0.00 0.00 2.71
3867 5056 7.459394 TCGATGGAGACGTATTAAATTGTTC 57.541 36.000 0.00 0.00 0.00 3.18
3868 5057 7.262772 TCGATGGAGACGTATTAAATTGTTCT 58.737 34.615 0.00 0.00 0.00 3.01
3869 5058 7.222031 TCGATGGAGACGTATTAAATTGTTCTG 59.778 37.037 0.00 0.00 0.00 3.02
3870 5059 7.222031 CGATGGAGACGTATTAAATTGTTCTGA 59.778 37.037 0.00 0.00 0.00 3.27
3871 5060 7.591006 TGGAGACGTATTAAATTGTTCTGAC 57.409 36.000 0.00 0.00 0.00 3.51
3906 5095 3.901222 TGACCATCTTTGACTGTCCAGTA 59.099 43.478 5.17 0.00 42.66 2.74
3974 5163 1.140312 TCTGCAAAACTCCCAGTCCT 58.860 50.000 0.00 0.00 0.00 3.85
3999 5188 6.594788 AATACGTGTCCCTACTAGTTCAAA 57.405 37.500 0.00 0.00 0.00 2.69
4002 5191 4.099881 ACGTGTCCCTACTAGTTCAAAACA 59.900 41.667 0.00 0.00 0.00 2.83
4006 5195 5.301551 TGTCCCTACTAGTTCAAAACACGTA 59.698 40.000 0.00 0.00 0.00 3.57
4007 5196 5.860716 GTCCCTACTAGTTCAAAACACGTAG 59.139 44.000 0.00 9.62 36.76 3.51
4009 5198 6.714810 TCCCTACTAGTTCAAAACACGTAGTA 59.285 38.462 0.00 7.17 41.61 1.82
4010 5199 7.394359 TCCCTACTAGTTCAAAACACGTAGTAT 59.606 37.037 0.00 0.00 41.61 2.12
4011 5200 8.031277 CCCTACTAGTTCAAAACACGTAGTATT 58.969 37.037 0.00 0.00 41.61 1.89
4012 5201 9.415544 CCTACTAGTTCAAAACACGTAGTATTT 57.584 33.333 0.00 0.00 39.63 1.40
4015 5204 9.415544 ACTAGTTCAAAACACGTAGTATTTAGG 57.584 33.333 0.00 0.00 35.37 2.69
4016 5205 9.630098 CTAGTTCAAAACACGTAGTATTTAGGA 57.370 33.333 0.00 0.00 35.37 2.94
4017 5206 8.302965 AGTTCAAAACACGTAGTATTTAGGAC 57.697 34.615 0.00 0.00 35.37 3.85
4018 5207 8.146412 AGTTCAAAACACGTAGTATTTAGGACT 58.854 33.333 0.00 0.00 35.37 3.85
4019 5208 7.878477 TCAAAACACGTAGTATTTAGGACTG 57.122 36.000 0.00 0.00 35.37 3.51
4020 5209 6.366877 TCAAAACACGTAGTATTTAGGACTGC 59.633 38.462 0.00 0.00 35.37 4.40
4021 5210 5.656213 AACACGTAGTATTTAGGACTGCT 57.344 39.130 0.00 0.00 41.61 4.24
4022 5211 6.764308 AACACGTAGTATTTAGGACTGCTA 57.236 37.500 0.00 0.00 41.61 3.49
4023 5212 6.374565 ACACGTAGTATTTAGGACTGCTAG 57.625 41.667 0.00 0.00 41.61 3.42
4024 5213 6.118170 ACACGTAGTATTTAGGACTGCTAGA 58.882 40.000 0.00 0.00 41.61 2.43
4025 5214 6.260493 ACACGTAGTATTTAGGACTGCTAGAG 59.740 42.308 0.00 0.00 41.61 2.43
4026 5215 5.764192 ACGTAGTATTTAGGACTGCTAGAGG 59.236 44.000 0.00 0.00 41.94 3.69
4027 5216 5.764192 CGTAGTATTTAGGACTGCTAGAGGT 59.236 44.000 0.00 0.00 0.00 3.85
4028 5217 6.933521 CGTAGTATTTAGGACTGCTAGAGGTA 59.066 42.308 0.00 0.00 0.00 3.08
4029 5218 7.607223 CGTAGTATTTAGGACTGCTAGAGGTAT 59.393 40.741 0.00 0.00 0.00 2.73
4030 5219 9.956640 GTAGTATTTAGGACTGCTAGAGGTATA 57.043 37.037 0.00 0.00 0.00 1.47
4031 5220 8.866970 AGTATTTAGGACTGCTAGAGGTATAC 57.133 38.462 0.00 0.00 0.00 1.47
4032 5221 8.671409 AGTATTTAGGACTGCTAGAGGTATACT 58.329 37.037 2.25 0.00 0.00 2.12
4033 5222 7.768807 ATTTAGGACTGCTAGAGGTATACTG 57.231 40.000 2.25 0.00 0.00 2.74
4034 5223 3.492337 AGGACTGCTAGAGGTATACTGC 58.508 50.000 2.25 1.41 0.00 4.40
4035 5224 3.139397 AGGACTGCTAGAGGTATACTGCT 59.861 47.826 2.25 3.32 0.00 4.24
4036 5225 4.351407 AGGACTGCTAGAGGTATACTGCTA 59.649 45.833 2.25 4.29 0.00 3.49
4037 5226 4.698304 GGACTGCTAGAGGTATACTGCTAG 59.302 50.000 19.48 19.48 33.63 3.42
4038 5227 5.513441 GGACTGCTAGAGGTATACTGCTAGA 60.513 48.000 24.24 14.35 32.92 2.43
4039 5228 5.556915 ACTGCTAGAGGTATACTGCTAGAG 58.443 45.833 24.24 20.46 32.92 2.43
4040 5229 4.912586 TGCTAGAGGTATACTGCTAGAGG 58.087 47.826 24.24 9.53 32.92 3.69
4041 5230 4.351407 TGCTAGAGGTATACTGCTAGAGGT 59.649 45.833 24.24 0.00 32.92 3.85
4042 5231 5.546887 TGCTAGAGGTATACTGCTAGAGGTA 59.453 44.000 24.24 11.90 32.92 3.08
4043 5232 6.215841 TGCTAGAGGTATACTGCTAGAGGTAT 59.784 42.308 24.24 3.72 32.92 2.73
4044 5233 7.114095 GCTAGAGGTATACTGCTAGAGGTATT 58.886 42.308 24.24 0.00 32.92 1.89
4045 5234 7.281549 GCTAGAGGTATACTGCTAGAGGTATTC 59.718 44.444 24.24 7.88 32.92 1.75
4046 5235 6.174760 AGAGGTATACTGCTAGAGGTATTCG 58.825 44.000 2.25 0.00 31.98 3.34
4047 5236 5.878627 AGGTATACTGCTAGAGGTATTCGT 58.121 41.667 2.25 7.16 31.98 3.85
4048 5237 5.706369 AGGTATACTGCTAGAGGTATTCGTG 59.294 44.000 2.25 0.00 31.98 4.35
4049 5238 5.472820 GGTATACTGCTAGAGGTATTCGTGT 59.527 44.000 2.25 0.00 31.98 4.49
4050 5239 6.652481 GGTATACTGCTAGAGGTATTCGTGTA 59.348 42.308 2.25 0.00 31.98 2.90
4051 5240 7.173907 GGTATACTGCTAGAGGTATTCGTGTAA 59.826 40.741 2.25 0.00 31.98 2.41
4052 5241 5.909621 ACTGCTAGAGGTATTCGTGTAAA 57.090 39.130 0.00 0.00 0.00 2.01
4053 5242 5.892568 ACTGCTAGAGGTATTCGTGTAAAG 58.107 41.667 0.00 0.00 0.00 1.85
4054 5243 5.418209 ACTGCTAGAGGTATTCGTGTAAAGT 59.582 40.000 0.00 0.00 0.00 2.66
4055 5244 6.600822 ACTGCTAGAGGTATTCGTGTAAAGTA 59.399 38.462 0.00 0.00 0.00 2.24
4056 5245 7.284944 ACTGCTAGAGGTATTCGTGTAAAGTAT 59.715 37.037 0.00 0.00 0.00 2.12
4057 5246 8.004087 TGCTAGAGGTATTCGTGTAAAGTATT 57.996 34.615 0.00 0.00 0.00 1.89
4058 5247 8.133627 TGCTAGAGGTATTCGTGTAAAGTATTC 58.866 37.037 0.00 0.00 0.00 1.75
4059 5248 8.133627 GCTAGAGGTATTCGTGTAAAGTATTCA 58.866 37.037 0.00 0.00 0.00 2.57
4062 5251 8.915036 AGAGGTATTCGTGTAAAGTATTCATCT 58.085 33.333 0.00 0.00 0.00 2.90
4063 5252 8.873215 AGGTATTCGTGTAAAGTATTCATCTG 57.127 34.615 0.00 0.00 0.00 2.90
4064 5253 8.692710 AGGTATTCGTGTAAAGTATTCATCTGA 58.307 33.333 0.00 0.00 0.00 3.27
4065 5254 9.477484 GGTATTCGTGTAAAGTATTCATCTGAT 57.523 33.333 0.00 0.00 0.00 2.90
4068 5257 9.770097 ATTCGTGTAAAGTATTCATCTGATCAT 57.230 29.630 0.00 0.00 0.00 2.45
4070 5259 9.899226 TCGTGTAAAGTATTCATCTGATCATAG 57.101 33.333 0.00 0.00 0.00 2.23
4071 5260 9.899226 CGTGTAAAGTATTCATCTGATCATAGA 57.101 33.333 0.00 0.00 0.00 1.98
4081 5270 9.636879 ATTCATCTGATCATAGACTGAATTACG 57.363 33.333 0.00 0.00 37.44 3.18
4082 5271 8.396272 TCATCTGATCATAGACTGAATTACGA 57.604 34.615 0.00 0.00 37.44 3.43
4083 5272 8.293157 TCATCTGATCATAGACTGAATTACGAC 58.707 37.037 0.00 0.00 37.44 4.34
4084 5273 7.809546 TCTGATCATAGACTGAATTACGACT 57.190 36.000 0.00 0.00 37.44 4.18
4085 5274 8.904099 TCTGATCATAGACTGAATTACGACTA 57.096 34.615 0.00 0.00 37.44 2.59
4086 5275 9.338622 TCTGATCATAGACTGAATTACGACTAA 57.661 33.333 0.00 0.00 37.44 2.24
4087 5276 9.952188 CTGATCATAGACTGAATTACGACTAAA 57.048 33.333 0.00 0.00 37.44 1.85
4105 5294 9.701098 ACGACTAAATTTAGTTGAAGTATGTCA 57.299 29.630 36.34 0.16 44.43 3.58
4117 5306 9.757227 AGTTGAAGTATGTCATTATAAGAGAGC 57.243 33.333 0.00 0.00 0.00 4.09
4118 5307 8.695284 GTTGAAGTATGTCATTATAAGAGAGCG 58.305 37.037 0.00 0.00 0.00 5.03
4119 5308 7.371159 TGAAGTATGTCATTATAAGAGAGCGG 58.629 38.462 0.00 0.00 0.00 5.52
4120 5309 5.715070 AGTATGTCATTATAAGAGAGCGGC 58.285 41.667 0.00 0.00 0.00 6.53
4121 5310 3.013276 TGTCATTATAAGAGAGCGGCG 57.987 47.619 0.51 0.51 0.00 6.46
4122 5311 2.361119 TGTCATTATAAGAGAGCGGCGT 59.639 45.455 9.37 0.00 0.00 5.68
4123 5312 3.181479 TGTCATTATAAGAGAGCGGCGTT 60.181 43.478 9.37 0.48 0.00 4.84
4124 5313 3.802685 GTCATTATAAGAGAGCGGCGTTT 59.197 43.478 9.37 0.00 0.00 3.60
4125 5314 4.049186 TCATTATAAGAGAGCGGCGTTTC 58.951 43.478 9.37 7.12 0.00 2.78
4126 5315 2.115348 TATAAGAGAGCGGCGTTTCG 57.885 50.000 9.37 0.00 0.00 3.46
4127 5316 0.527817 ATAAGAGAGCGGCGTTTCGG 60.528 55.000 9.37 0.00 0.00 4.30
4128 5317 1.588824 TAAGAGAGCGGCGTTTCGGA 61.589 55.000 9.37 0.00 0.00 4.55
4129 5318 2.820767 AAGAGAGCGGCGTTTCGGAG 62.821 60.000 9.37 0.00 0.00 4.63
4134 5323 3.181967 CGGCGTTTCGGAGCTCTG 61.182 66.667 16.98 16.98 0.00 3.35
4135 5324 2.815647 GGCGTTTCGGAGCTCTGG 60.816 66.667 22.38 10.62 0.00 3.86
4136 5325 2.048127 GCGTTTCGGAGCTCTGGT 60.048 61.111 22.38 0.00 0.00 4.00
4137 5326 2.383527 GCGTTTCGGAGCTCTGGTG 61.384 63.158 22.38 10.64 0.00 4.17
4138 5327 2.383527 CGTTTCGGAGCTCTGGTGC 61.384 63.158 22.38 11.11 0.00 5.01
4139 5328 1.301716 GTTTCGGAGCTCTGGTGCA 60.302 57.895 22.38 0.00 34.99 4.57
4140 5329 0.674895 GTTTCGGAGCTCTGGTGCAT 60.675 55.000 22.38 0.00 34.99 3.96
4141 5330 0.391661 TTTCGGAGCTCTGGTGCATC 60.392 55.000 22.38 0.00 34.99 3.91
4142 5331 1.260538 TTCGGAGCTCTGGTGCATCT 61.261 55.000 22.38 0.00 34.99 2.90
4143 5332 1.521010 CGGAGCTCTGGTGCATCTG 60.521 63.158 15.27 0.00 34.99 2.90
4144 5333 1.818785 GGAGCTCTGGTGCATCTGC 60.819 63.158 14.64 0.00 42.50 4.26
4154 5343 2.743538 GCATCTGCACCTGCGTGA 60.744 61.111 0.00 0.00 43.14 4.35
4155 5344 2.327343 GCATCTGCACCTGCGTGAA 61.327 57.895 0.00 0.00 43.14 3.18
4156 5345 1.499056 CATCTGCACCTGCGTGAAC 59.501 57.895 0.00 0.00 43.14 3.18
4157 5346 0.952497 CATCTGCACCTGCGTGAACT 60.952 55.000 0.00 0.00 43.14 3.01
4158 5347 0.952497 ATCTGCACCTGCGTGAACTG 60.952 55.000 0.00 0.00 43.14 3.16
4159 5348 1.889105 CTGCACCTGCGTGAACTGT 60.889 57.895 0.00 0.00 43.14 3.55
4160 5349 0.599991 CTGCACCTGCGTGAACTGTA 60.600 55.000 0.00 0.00 43.14 2.74
4161 5350 0.179070 TGCACCTGCGTGAACTGTAA 60.179 50.000 0.00 0.00 43.14 2.41
4162 5351 0.941542 GCACCTGCGTGAACTGTAAA 59.058 50.000 0.00 0.00 43.14 2.01
4163 5352 1.535462 GCACCTGCGTGAACTGTAAAT 59.465 47.619 0.00 0.00 43.14 1.40
4164 5353 2.031157 GCACCTGCGTGAACTGTAAATT 60.031 45.455 0.00 0.00 43.14 1.82
4165 5354 3.550030 GCACCTGCGTGAACTGTAAATTT 60.550 43.478 0.00 0.00 43.14 1.82
4166 5355 3.974401 CACCTGCGTGAACTGTAAATTTG 59.026 43.478 0.00 0.00 43.14 2.32
4167 5356 3.004315 ACCTGCGTGAACTGTAAATTTGG 59.996 43.478 0.00 0.00 0.00 3.28
4168 5357 3.252215 CCTGCGTGAACTGTAAATTTGGA 59.748 43.478 0.00 0.00 0.00 3.53
4169 5358 4.261405 CCTGCGTGAACTGTAAATTTGGAA 60.261 41.667 0.00 0.00 0.00 3.53
4170 5359 5.250235 TGCGTGAACTGTAAATTTGGAAA 57.750 34.783 0.00 0.00 0.00 3.13
4171 5360 5.651530 TGCGTGAACTGTAAATTTGGAAAA 58.348 33.333 0.00 0.00 0.00 2.29
4172 5361 6.100004 TGCGTGAACTGTAAATTTGGAAAAA 58.900 32.000 0.00 0.00 0.00 1.94
4173 5362 6.254589 TGCGTGAACTGTAAATTTGGAAAAAG 59.745 34.615 0.00 0.00 0.00 2.27
4174 5363 6.474102 GCGTGAACTGTAAATTTGGAAAAAGA 59.526 34.615 0.00 0.00 0.00 2.52
4175 5364 7.305993 GCGTGAACTGTAAATTTGGAAAAAGAG 60.306 37.037 0.00 0.00 0.00 2.85
4176 5365 7.913297 CGTGAACTGTAAATTTGGAAAAAGAGA 59.087 33.333 0.00 0.00 0.00 3.10
4177 5366 9.581099 GTGAACTGTAAATTTGGAAAAAGAGAA 57.419 29.630 0.00 0.00 0.00 2.87
4285 5476 6.940298 TCAGCAAACTACAGTAATTTAGCCTT 59.060 34.615 5.74 0.00 0.00 4.35
4286 5477 8.098286 TCAGCAAACTACAGTAATTTAGCCTTA 58.902 33.333 5.74 0.00 0.00 2.69
4381 5594 4.621747 GCACTGTGAGTTTAGATGGCTAGT 60.622 45.833 12.86 0.00 0.00 2.57
4415 5628 0.681564 ACACTCGCACCTAGCTAGCT 60.682 55.000 23.12 23.12 39.52 3.32
4423 5636 2.208431 CACCTAGCTAGCTGTTGCATC 58.792 52.381 27.68 0.00 42.74 3.91
4473 5686 5.388408 AGCTAGCATATACCTTACCGTTC 57.612 43.478 18.83 0.00 0.00 3.95
4481 5694 2.818274 CTTACCGTTCGCAGGGCC 60.818 66.667 0.00 0.00 0.00 5.80
4509 5731 4.522297 CGTAGCTGGCTTCTTTACAATC 57.478 45.455 0.00 0.00 0.00 2.67
4512 5734 3.615155 AGCTGGCTTCTTTACAATCTCC 58.385 45.455 0.00 0.00 0.00 3.71
4543 5765 0.179062 CTTGGCAGCTAGCTGGGTAG 60.179 60.000 38.52 19.08 43.77 3.18
4614 5865 4.764308 CGATGGAGAATCTACAGAGATGGA 59.236 45.833 0.25 0.00 41.87 3.41
4807 6067 1.133945 TGCTAGCCAAACAGGTCACAA 60.134 47.619 13.29 0.00 40.61 3.33
4810 6070 1.392589 AGCCAAACAGGTCACAACAG 58.607 50.000 0.00 0.00 40.61 3.16
4826 6086 8.612619 GGTCACAACAGATAAAACTATGGTATG 58.387 37.037 0.00 0.00 0.00 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 39 6.296087 GCATCTACATCTTCTATTGGGGATGA 60.296 42.308 8.48 0.00 38.91 2.92
42 44 7.572523 TTTTGCATCTACATCTTCTATTGGG 57.427 36.000 0.00 0.00 0.00 4.12
78 80 2.107950 TTTTGGCCCTCGTGATGTAG 57.892 50.000 0.00 0.00 0.00 2.74
86 88 2.255252 CAGCGTTTTTGGCCCTCG 59.745 61.111 0.00 0.00 0.00 4.63
91 94 0.576798 GTTGAAGCAGCGTTTTTGGC 59.423 50.000 0.00 0.00 0.00 4.52
100 103 4.186926 TCTACATCATCTGTTGAAGCAGC 58.813 43.478 0.00 0.00 36.80 5.25
125 128 7.123355 TGAAGGAGGTGATTCAATTTGTTTT 57.877 32.000 0.00 0.00 32.66 2.43
129 132 5.320549 CCTGAAGGAGGTGATTCAATTTG 57.679 43.478 0.00 0.00 37.02 2.32
190 197 6.549364 AGTTTTACATCACATGGAAAGTGGAA 59.451 34.615 0.00 0.00 43.49 3.53
196 203 6.206634 GTCTGGAGTTTTACATCACATGGAAA 59.793 38.462 0.00 0.00 41.17 3.13
198 205 5.245531 GTCTGGAGTTTTACATCACATGGA 58.754 41.667 0.00 0.00 33.60 3.41
202 209 3.064207 GCGTCTGGAGTTTTACATCACA 58.936 45.455 0.00 0.00 0.00 3.58
220 227 2.203153 GTGGTGGTTGTCCTGCGT 60.203 61.111 0.00 0.00 34.23 5.24
225 232 0.106918 TGAAGTGGTGGTGGTTGTCC 60.107 55.000 0.00 0.00 0.00 4.02
227 234 2.452600 AATGAAGTGGTGGTGGTTGT 57.547 45.000 0.00 0.00 0.00 3.32
239 246 4.790790 AGATAGGGGGAACTGAAATGAAGT 59.209 41.667 0.00 0.00 0.00 3.01
257 264 1.344763 GGGTCGGGAATGGACAGATAG 59.655 57.143 0.00 0.00 36.12 2.08
259 266 1.345715 GGGGTCGGGAATGGACAGAT 61.346 60.000 0.00 0.00 36.12 2.90
269 276 3.988050 ATAACTGGCGGGGTCGGGA 62.988 63.158 0.00 0.00 36.79 5.14
282 289 2.070650 GCGGGAGGTGGGGATAACT 61.071 63.158 0.00 0.00 0.00 2.24
284 291 2.770904 GGCGGGAGGTGGGGATAA 60.771 66.667 0.00 0.00 0.00 1.75
310 317 0.249911 GGACTCAAATCGGCGGCTAT 60.250 55.000 7.21 0.00 0.00 2.97
421 462 1.379642 GGAGAAGCGGCTGATTTGGG 61.380 60.000 1.81 0.00 0.00 4.12
475 525 4.374399 AGAAGGTCGAGTTTAGCGAAAAA 58.626 39.130 0.00 0.00 39.73 1.94
535 590 0.953471 ACGCGGCTGTGAATTAAGCA 60.953 50.000 14.30 0.00 41.36 3.91
540 595 2.357034 ACGACGCGGCTGTGAATT 60.357 55.556 11.76 0.00 0.00 2.17
554 609 3.411418 GAGCTCGAATGGCCGACGA 62.411 63.158 15.60 15.60 34.56 4.20
597 652 3.411418 GACGGCCGAGCGATGAGAA 62.411 63.158 35.90 0.00 0.00 2.87
739 1228 5.412594 ACGGATGATGTATATTTGGTGATGC 59.587 40.000 0.00 0.00 0.00 3.91
856 1345 5.078411 AGAGCGTCTCAAACAGATAATGT 57.922 39.130 9.09 0.00 36.95 2.71
865 1354 2.349886 CCATGCTTAGAGCGTCTCAAAC 59.650 50.000 9.09 0.21 46.26 2.93
869 1358 0.103937 AGCCATGCTTAGAGCGTCTC 59.896 55.000 0.00 0.00 46.26 3.36
913 1402 1.656587 TGGATCAGGTAGCAAGTGGT 58.343 50.000 0.00 0.00 0.00 4.16
1096 1845 0.750249 GGAAGTGGTTGGTTGGTTGG 59.250 55.000 0.00 0.00 0.00 3.77
1097 1846 1.775385 AGGAAGTGGTTGGTTGGTTG 58.225 50.000 0.00 0.00 0.00 3.77
1098 1847 2.384828 GAAGGAAGTGGTTGGTTGGTT 58.615 47.619 0.00 0.00 0.00 3.67
1099 1848 1.411074 GGAAGGAAGTGGTTGGTTGGT 60.411 52.381 0.00 0.00 0.00 3.67
1342 2091 3.414700 AACTTCTTGCGCGGCGAG 61.415 61.111 28.54 15.79 41.13 5.03
1526 2275 1.266867 AAGATGTTGCCCCCATTGCC 61.267 55.000 0.00 0.00 0.00 4.52
1527 2276 0.176449 GAAGATGTTGCCCCCATTGC 59.824 55.000 0.00 0.00 0.00 3.56
1528 2277 0.457035 CGAAGATGTTGCCCCCATTG 59.543 55.000 0.00 0.00 0.00 2.82
1585 2334 4.385405 GCGCTGACACTGGAGCCT 62.385 66.667 0.00 0.00 30.98 4.58
1791 2540 1.516423 GGCTCGGTAGACAAGGACC 59.484 63.158 0.00 0.00 0.00 4.46
1930 2679 3.499737 CTTGCGTGCCCGATGGAC 61.500 66.667 0.00 0.00 35.63 4.02
1931 2680 3.545124 AACTTGCGTGCCCGATGGA 62.545 57.895 0.00 0.00 35.63 3.41
2142 2912 2.123251 GGATGGAGGAGCGGGAGA 60.123 66.667 0.00 0.00 0.00 3.71
2321 3108 2.775890 GATCCAATCGGCACATCAGAT 58.224 47.619 0.00 0.00 0.00 2.90
2322 3109 2.245159 GATCCAATCGGCACATCAGA 57.755 50.000 0.00 0.00 0.00 3.27
2481 3274 7.445096 GGAAATGGAATGGAAAAATGAACAACT 59.555 33.333 0.00 0.00 0.00 3.16
2635 3429 6.137794 TCTACTTGGTCGATCAAGAATCTC 57.862 41.667 38.16 0.00 44.98 2.75
2753 3548 6.587990 GCATACTAATATGACCAGTGCTAGTG 59.412 42.308 0.00 0.00 40.75 2.74
2755 3550 6.929625 AGCATACTAATATGACCAGTGCTAG 58.070 40.000 0.00 0.00 40.75 3.42
2756 3551 6.721668 AGAGCATACTAATATGACCAGTGCTA 59.278 38.462 0.00 0.00 40.75 3.49
2764 3559 8.930760 GTGAATTGGAGAGCATACTAATATGAC 58.069 37.037 0.00 0.00 40.75 3.06
2777 3585 0.034670 AGCCTGGTGAATTGGAGAGC 60.035 55.000 0.00 0.00 0.00 4.09
2829 3637 8.837788 ATATGATGATCGATCACAAAGCTAAA 57.162 30.769 29.49 9.30 44.12 1.85
2987 3802 5.132897 TCAGGTTACATTGACCAAAATGC 57.867 39.130 0.00 0.00 40.54 3.56
2999 3814 8.270744 AGAAGCTAAGAAATGATCAGGTTACAT 58.729 33.333 0.09 0.00 0.00 2.29
3055 4109 7.233553 ACCATAAGCTTCAGATAGCAGTATGTA 59.766 37.037 0.00 0.00 43.68 2.29
3142 4196 5.811100 CGGTCACTAAGGAAAGAAACTATCC 59.189 44.000 0.00 0.00 0.00 2.59
3146 4200 4.950205 TCGGTCACTAAGGAAAGAAACT 57.050 40.909 0.00 0.00 0.00 2.66
3147 4201 4.326548 CGATCGGTCACTAAGGAAAGAAAC 59.673 45.833 7.38 0.00 0.00 2.78
3155 4209 0.738975 TGCTCGATCGGTCACTAAGG 59.261 55.000 16.41 0.00 0.00 2.69
3276 4330 5.414360 TCTGAATGTTCTGCAGACATCTAC 58.586 41.667 18.03 12.33 34.02 2.59
3355 4421 7.631717 AGATTACCAAAATGAAAGTAGGAGC 57.368 36.000 0.00 0.00 0.00 4.70
3392 4459 1.073763 TGTGCAGTGCAGGTAAGGATT 59.926 47.619 20.42 0.00 40.08 3.01
3605 4785 1.398578 GGAAAGCGCAAAAGACGAGAC 60.399 52.381 11.47 0.00 0.00 3.36
3606 4786 0.865769 GGAAAGCGCAAAAGACGAGA 59.134 50.000 11.47 0.00 0.00 4.04
3607 4787 0.586319 TGGAAAGCGCAAAAGACGAG 59.414 50.000 11.47 0.00 0.00 4.18
3608 4788 0.306533 GTGGAAAGCGCAAAAGACGA 59.693 50.000 11.47 0.00 0.00 4.20
3609 4789 0.307760 AGTGGAAAGCGCAAAAGACG 59.692 50.000 11.47 0.00 0.00 4.18
3645 4825 0.388907 CAAAAATCAGGCCAGGCACG 60.389 55.000 15.19 2.95 0.00 5.34
3646 4826 0.968405 TCAAAAATCAGGCCAGGCAC 59.032 50.000 15.19 2.38 0.00 5.01
3647 4827 0.968405 GTCAAAAATCAGGCCAGGCA 59.032 50.000 15.19 0.00 0.00 4.75
3648 4828 0.247460 GGTCAAAAATCAGGCCAGGC 59.753 55.000 5.01 1.26 0.00 4.85
3745 4932 8.165239 AGTTCAATGACTAAAAACTGCATACA 57.835 30.769 0.00 0.00 0.00 2.29
3753 4940 8.798153 CAACTGACAAGTTCAATGACTAAAAAC 58.202 33.333 0.00 0.00 45.07 2.43
3765 4952 4.450976 ACTGCATACAACTGACAAGTTCA 58.549 39.130 0.00 0.00 45.07 3.18
3771 4958 6.540551 TGACTAAAAACTGCATACAACTGACA 59.459 34.615 0.00 0.00 0.00 3.58
3772 4959 6.851330 GTGACTAAAAACTGCATACAACTGAC 59.149 38.462 0.00 0.00 0.00 3.51
3773 4960 6.765989 AGTGACTAAAAACTGCATACAACTGA 59.234 34.615 0.00 0.00 0.00 3.41
3774 4961 6.852853 CAGTGACTAAAAACTGCATACAACTG 59.147 38.462 0.00 0.00 37.58 3.16
3784 4971 5.163764 TGACAAGTGCAGTGACTAAAAACTG 60.164 40.000 0.00 0.00 45.37 3.16
3785 4972 4.941263 TGACAAGTGCAGTGACTAAAAACT 59.059 37.500 0.00 0.00 0.00 2.66
3788 4975 4.513442 ACTGACAAGTGCAGTGACTAAAA 58.487 39.130 0.00 0.00 44.39 1.52
3789 4976 4.137116 ACTGACAAGTGCAGTGACTAAA 57.863 40.909 0.00 0.00 44.39 1.85
3790 4977 3.819564 ACTGACAAGTGCAGTGACTAA 57.180 42.857 0.00 0.00 44.39 2.24
3794 4981 2.401583 ACAACTGACAAGTGCAGTGA 57.598 45.000 0.00 0.00 45.27 3.41
3795 4982 3.607775 GCATACAACTGACAAGTGCAGTG 60.608 47.826 0.00 0.00 45.27 3.66
3797 4984 2.095567 GGCATACAACTGACAAGTGCAG 60.096 50.000 0.00 0.00 36.51 4.41
3798 4985 1.879380 GGCATACAACTGACAAGTGCA 59.121 47.619 0.00 0.00 36.51 4.57
3800 4987 2.485426 CTGGGCATACAACTGACAAGTG 59.515 50.000 0.00 0.00 36.51 3.16
3801 4988 2.106511 ACTGGGCATACAACTGACAAGT 59.893 45.455 0.00 0.00 38.71 3.16
3802 4989 2.744202 GACTGGGCATACAACTGACAAG 59.256 50.000 0.00 0.00 0.00 3.16
3803 4990 2.105649 TGACTGGGCATACAACTGACAA 59.894 45.455 0.00 0.00 0.00 3.18
3806 4993 1.339055 GCTGACTGGGCATACAACTGA 60.339 52.381 0.00 0.00 0.00 3.41
3807 4994 1.089920 GCTGACTGGGCATACAACTG 58.910 55.000 0.00 0.00 0.00 3.16
3808 4995 0.987294 AGCTGACTGGGCATACAACT 59.013 50.000 0.00 0.00 0.00 3.16
3809 4996 2.280628 GTAGCTGACTGGGCATACAAC 58.719 52.381 0.00 0.00 0.00 3.32
3810 4997 1.134818 CGTAGCTGACTGGGCATACAA 60.135 52.381 0.00 0.00 0.00 2.41
3811 4998 0.459899 CGTAGCTGACTGGGCATACA 59.540 55.000 0.00 0.00 0.00 2.29
3812 4999 0.249489 CCGTAGCTGACTGGGCATAC 60.249 60.000 0.00 0.00 0.00 2.39
3813 5000 0.686441 ACCGTAGCTGACTGGGCATA 60.686 55.000 0.00 0.00 0.00 3.14
3814 5001 1.553690 AACCGTAGCTGACTGGGCAT 61.554 55.000 0.00 0.00 0.00 4.40
3836 5023 1.978542 ACGTCTCCATCGAAAACGAG 58.021 50.000 12.99 5.56 37.13 4.18
3837 5024 3.770263 ATACGTCTCCATCGAAAACGA 57.230 42.857 12.99 0.00 37.13 3.85
3862 5051 0.813610 CCACACTGCGGTCAGAACAA 60.814 55.000 0.00 0.00 42.95 2.83
3864 5053 0.814010 AACCACACTGCGGTCAGAAC 60.814 55.000 0.00 0.00 42.95 3.01
3865 5054 0.107410 AAACCACACTGCGGTCAGAA 60.107 50.000 0.00 0.00 42.95 3.02
3867 5056 0.813610 TCAAACCACACTGCGGTCAG 60.814 55.000 0.00 0.00 45.71 3.51
3868 5057 1.092921 GTCAAACCACACTGCGGTCA 61.093 55.000 0.00 0.00 34.99 4.02
3869 5058 1.647084 GTCAAACCACACTGCGGTC 59.353 57.895 0.00 0.00 34.99 4.79
3870 5059 1.822186 GGTCAAACCACACTGCGGT 60.822 57.895 0.00 0.00 38.42 5.68
3871 5060 1.821759 TGGTCAAACCACACTGCGG 60.822 57.895 0.00 0.00 44.79 5.69
3891 5080 2.316792 CGTCGTACTGGACAGTCAAAG 58.683 52.381 8.44 1.93 42.54 2.77
3898 5087 1.162698 CTTCTCCGTCGTACTGGACA 58.837 55.000 2.46 0.00 36.73 4.02
3906 5095 0.898789 ATGTGGTCCTTCTCCGTCGT 60.899 55.000 0.00 0.00 0.00 4.34
3964 5153 3.181478 GGACACGTATTTAGGACTGGGAG 60.181 52.174 0.00 0.00 0.00 4.30
3966 5155 2.159000 GGGACACGTATTTAGGACTGGG 60.159 54.545 0.00 0.00 0.00 4.45
3974 5163 7.701539 TTGAACTAGTAGGGACACGTATTTA 57.298 36.000 0.00 0.00 0.00 1.40
3999 5188 5.656213 AGCAGTCCTAAATACTACGTGTT 57.344 39.130 0.00 0.00 0.00 3.32
4002 5191 5.764192 CCTCTAGCAGTCCTAAATACTACGT 59.236 44.000 0.00 0.00 0.00 3.57
4006 5195 8.671409 AGTATACCTCTAGCAGTCCTAAATACT 58.329 37.037 0.00 0.00 0.00 2.12
4007 5196 8.732531 CAGTATACCTCTAGCAGTCCTAAATAC 58.267 40.741 0.00 0.00 0.00 1.89
4008 5197 7.393796 GCAGTATACCTCTAGCAGTCCTAAATA 59.606 40.741 0.00 0.00 0.00 1.40
4009 5198 6.209788 GCAGTATACCTCTAGCAGTCCTAAAT 59.790 42.308 0.00 0.00 0.00 1.40
4010 5199 5.535406 GCAGTATACCTCTAGCAGTCCTAAA 59.465 44.000 0.00 0.00 0.00 1.85
4011 5200 5.071370 GCAGTATACCTCTAGCAGTCCTAA 58.929 45.833 0.00 0.00 0.00 2.69
4012 5201 4.351407 AGCAGTATACCTCTAGCAGTCCTA 59.649 45.833 0.00 0.00 0.00 2.94
4013 5202 3.139397 AGCAGTATACCTCTAGCAGTCCT 59.861 47.826 0.00 0.00 0.00 3.85
4014 5203 3.492337 AGCAGTATACCTCTAGCAGTCC 58.508 50.000 0.00 0.00 0.00 3.85
4015 5204 5.553123 TCTAGCAGTATACCTCTAGCAGTC 58.447 45.833 17.67 0.00 0.00 3.51
4016 5205 5.514136 CCTCTAGCAGTATACCTCTAGCAGT 60.514 48.000 17.67 0.00 0.00 4.40
4017 5206 4.941263 CCTCTAGCAGTATACCTCTAGCAG 59.059 50.000 17.67 15.49 0.00 4.24
4018 5207 4.351407 ACCTCTAGCAGTATACCTCTAGCA 59.649 45.833 17.67 10.10 0.00 3.49
4019 5208 4.913784 ACCTCTAGCAGTATACCTCTAGC 58.086 47.826 17.67 8.26 0.00 3.42
4020 5209 7.493320 CGAATACCTCTAGCAGTATACCTCTAG 59.507 44.444 16.89 16.89 0.00 2.43
4021 5210 7.038445 ACGAATACCTCTAGCAGTATACCTCTA 60.038 40.741 0.00 0.78 0.00 2.43
4022 5211 6.174760 CGAATACCTCTAGCAGTATACCTCT 58.825 44.000 0.00 0.00 0.00 3.69
4023 5212 5.939296 ACGAATACCTCTAGCAGTATACCTC 59.061 44.000 0.00 0.00 0.00 3.85
4024 5213 5.706369 CACGAATACCTCTAGCAGTATACCT 59.294 44.000 0.00 0.00 0.00 3.08
4025 5214 5.472820 ACACGAATACCTCTAGCAGTATACC 59.527 44.000 0.00 0.00 0.00 2.73
4026 5215 6.557291 ACACGAATACCTCTAGCAGTATAC 57.443 41.667 0.00 0.00 0.00 1.47
4027 5216 8.681486 TTTACACGAATACCTCTAGCAGTATA 57.319 34.615 0.00 0.00 0.00 1.47
4028 5217 7.284944 ACTTTACACGAATACCTCTAGCAGTAT 59.715 37.037 0.00 0.13 0.00 2.12
4029 5218 6.600822 ACTTTACACGAATACCTCTAGCAGTA 59.399 38.462 0.00 0.00 0.00 2.74
4030 5219 5.418209 ACTTTACACGAATACCTCTAGCAGT 59.582 40.000 0.00 0.00 0.00 4.40
4031 5220 5.892568 ACTTTACACGAATACCTCTAGCAG 58.107 41.667 0.00 0.00 0.00 4.24
4032 5221 5.909621 ACTTTACACGAATACCTCTAGCA 57.090 39.130 0.00 0.00 0.00 3.49
4033 5222 8.133627 TGAATACTTTACACGAATACCTCTAGC 58.866 37.037 0.00 0.00 0.00 3.42
4036 5225 8.915036 AGATGAATACTTTACACGAATACCTCT 58.085 33.333 0.00 0.00 0.00 3.69
4037 5226 8.969267 CAGATGAATACTTTACACGAATACCTC 58.031 37.037 0.00 0.00 0.00 3.85
4038 5227 8.692710 TCAGATGAATACTTTACACGAATACCT 58.307 33.333 0.00 0.00 0.00 3.08
4039 5228 8.867112 TCAGATGAATACTTTACACGAATACC 57.133 34.615 0.00 0.00 0.00 2.73
4042 5231 9.770097 ATGATCAGATGAATACTTTACACGAAT 57.230 29.630 0.09 0.00 0.00 3.34
4044 5233 9.899226 CTATGATCAGATGAATACTTTACACGA 57.101 33.333 0.09 0.00 0.00 4.35
4045 5234 9.899226 TCTATGATCAGATGAATACTTTACACG 57.101 33.333 0.09 0.00 0.00 4.49
4055 5244 9.636879 CGTAATTCAGTCTATGATCAGATGAAT 57.363 33.333 10.46 10.46 37.89 2.57
4056 5245 8.850156 TCGTAATTCAGTCTATGATCAGATGAA 58.150 33.333 7.18 7.18 37.89 2.57
4057 5246 8.293157 GTCGTAATTCAGTCTATGATCAGATGA 58.707 37.037 0.09 0.00 37.89 2.92
4058 5247 8.296000 AGTCGTAATTCAGTCTATGATCAGATG 58.704 37.037 0.09 0.00 37.89 2.90
4059 5248 8.402798 AGTCGTAATTCAGTCTATGATCAGAT 57.597 34.615 0.09 0.00 37.89 2.90
4060 5249 7.809546 AGTCGTAATTCAGTCTATGATCAGA 57.190 36.000 0.09 0.00 37.89 3.27
4061 5250 9.952188 TTTAGTCGTAATTCAGTCTATGATCAG 57.048 33.333 0.09 0.00 37.89 2.90
4079 5268 9.701098 TGACATACTTCAACTAAATTTAGTCGT 57.299 29.630 26.87 21.73 42.86 4.34
4091 5280 9.757227 GCTCTCTTATAATGACATACTTCAACT 57.243 33.333 0.00 0.00 0.00 3.16
4092 5281 8.695284 CGCTCTCTTATAATGACATACTTCAAC 58.305 37.037 0.00 0.00 0.00 3.18
4093 5282 7.867909 CCGCTCTCTTATAATGACATACTTCAA 59.132 37.037 0.00 0.00 0.00 2.69
4094 5283 7.371159 CCGCTCTCTTATAATGACATACTTCA 58.629 38.462 0.00 0.00 0.00 3.02
4095 5284 6.309251 GCCGCTCTCTTATAATGACATACTTC 59.691 42.308 0.00 0.00 0.00 3.01
4096 5285 6.159988 GCCGCTCTCTTATAATGACATACTT 58.840 40.000 0.00 0.00 0.00 2.24
4097 5286 5.620205 CGCCGCTCTCTTATAATGACATACT 60.620 44.000 0.00 0.00 0.00 2.12
4098 5287 4.559251 CGCCGCTCTCTTATAATGACATAC 59.441 45.833 0.00 0.00 0.00 2.39
4099 5288 4.217767 ACGCCGCTCTCTTATAATGACATA 59.782 41.667 0.00 0.00 0.00 2.29
4100 5289 3.005897 ACGCCGCTCTCTTATAATGACAT 59.994 43.478 0.00 0.00 0.00 3.06
4101 5290 2.361119 ACGCCGCTCTCTTATAATGACA 59.639 45.455 0.00 0.00 0.00 3.58
4102 5291 3.014604 ACGCCGCTCTCTTATAATGAC 57.985 47.619 0.00 0.00 0.00 3.06
4103 5292 3.728076 AACGCCGCTCTCTTATAATGA 57.272 42.857 0.00 0.00 0.00 2.57
4104 5293 3.121328 CGAAACGCCGCTCTCTTATAATG 60.121 47.826 0.00 0.00 0.00 1.90
4105 5294 3.050619 CGAAACGCCGCTCTCTTATAAT 58.949 45.455 0.00 0.00 0.00 1.28
4106 5295 2.456989 CGAAACGCCGCTCTCTTATAA 58.543 47.619 0.00 0.00 0.00 0.98
4107 5296 1.268896 CCGAAACGCCGCTCTCTTATA 60.269 52.381 0.00 0.00 0.00 0.98
4108 5297 0.527817 CCGAAACGCCGCTCTCTTAT 60.528 55.000 0.00 0.00 0.00 1.73
4109 5298 1.153901 CCGAAACGCCGCTCTCTTA 60.154 57.895 0.00 0.00 0.00 2.10
4110 5299 2.432628 CCGAAACGCCGCTCTCTT 60.433 61.111 0.00 0.00 0.00 2.85
4111 5300 3.343788 CTCCGAAACGCCGCTCTCT 62.344 63.158 0.00 0.00 0.00 3.10
4112 5301 2.881352 CTCCGAAACGCCGCTCTC 60.881 66.667 0.00 0.00 0.00 3.20
4117 5306 3.181967 CAGAGCTCCGAAACGCCG 61.182 66.667 10.93 0.00 0.00 6.46
4118 5307 2.815647 CCAGAGCTCCGAAACGCC 60.816 66.667 10.93 0.00 0.00 5.68
4119 5308 2.048127 ACCAGAGCTCCGAAACGC 60.048 61.111 10.93 0.00 0.00 4.84
4120 5309 2.383527 GCACCAGAGCTCCGAAACG 61.384 63.158 10.93 0.00 0.00 3.60
4121 5310 0.674895 ATGCACCAGAGCTCCGAAAC 60.675 55.000 10.93 0.00 34.99 2.78
4122 5311 0.391661 GATGCACCAGAGCTCCGAAA 60.392 55.000 10.93 0.00 34.99 3.46
4123 5312 1.219124 GATGCACCAGAGCTCCGAA 59.781 57.895 10.93 0.00 34.99 4.30
4124 5313 1.683707 AGATGCACCAGAGCTCCGA 60.684 57.895 10.93 0.00 34.99 4.55
4125 5314 1.521010 CAGATGCACCAGAGCTCCG 60.521 63.158 10.93 0.00 34.99 4.63
4126 5315 1.818785 GCAGATGCACCAGAGCTCC 60.819 63.158 10.93 0.00 41.59 4.70
4127 5316 3.810812 GCAGATGCACCAGAGCTC 58.189 61.111 5.27 5.27 41.59 4.09
4137 5326 2.327343 TTCACGCAGGTGCAGATGC 61.327 57.895 12.09 12.09 44.03 3.91
4138 5327 0.952497 AGTTCACGCAGGTGCAGATG 60.952 55.000 2.33 0.00 44.03 2.90
4139 5328 0.952497 CAGTTCACGCAGGTGCAGAT 60.952 55.000 2.33 0.00 44.03 2.90
4140 5329 1.595109 CAGTTCACGCAGGTGCAGA 60.595 57.895 2.33 0.00 44.03 4.26
4141 5330 0.599991 TACAGTTCACGCAGGTGCAG 60.600 55.000 2.33 0.00 44.03 4.41
4142 5331 0.179070 TTACAGTTCACGCAGGTGCA 60.179 50.000 2.33 0.00 44.03 4.57
4143 5332 0.941542 TTTACAGTTCACGCAGGTGC 59.058 50.000 0.00 0.00 44.03 5.01
4144 5333 3.896648 AATTTACAGTTCACGCAGGTG 57.103 42.857 0.00 0.00 45.78 4.00
4145 5334 3.004315 CCAAATTTACAGTTCACGCAGGT 59.996 43.478 0.00 0.00 0.00 4.00
4146 5335 3.252215 TCCAAATTTACAGTTCACGCAGG 59.748 43.478 0.00 0.00 0.00 4.85
4147 5336 4.481930 TCCAAATTTACAGTTCACGCAG 57.518 40.909 0.00 0.00 0.00 5.18
4148 5337 4.902443 TTCCAAATTTACAGTTCACGCA 57.098 36.364 0.00 0.00 0.00 5.24
4149 5338 6.474102 TCTTTTTCCAAATTTACAGTTCACGC 59.526 34.615 0.00 0.00 0.00 5.34
4150 5339 7.913297 TCTCTTTTTCCAAATTTACAGTTCACG 59.087 33.333 0.00 0.00 0.00 4.35
4151 5340 9.581099 TTCTCTTTTTCCAAATTTACAGTTCAC 57.419 29.630 0.00 0.00 0.00 3.18
4198 5387 9.071276 CCCTAGTCTTTCATGTGCAAAATATAT 57.929 33.333 0.00 0.00 0.00 0.86
4199 5388 7.013274 GCCCTAGTCTTTCATGTGCAAAATATA 59.987 37.037 0.00 0.00 0.00 0.86
4200 5389 6.183360 GCCCTAGTCTTTCATGTGCAAAATAT 60.183 38.462 0.00 0.00 0.00 1.28
4201 5390 5.125417 GCCCTAGTCTTTCATGTGCAAAATA 59.875 40.000 0.00 0.00 0.00 1.40
4202 5391 4.082026 GCCCTAGTCTTTCATGTGCAAAAT 60.082 41.667 0.00 0.00 0.00 1.82
4203 5392 3.255642 GCCCTAGTCTTTCATGTGCAAAA 59.744 43.478 0.00 0.00 0.00 2.44
4204 5393 2.819608 GCCCTAGTCTTTCATGTGCAAA 59.180 45.455 0.00 0.00 0.00 3.68
4205 5394 2.436417 GCCCTAGTCTTTCATGTGCAA 58.564 47.619 0.00 0.00 0.00 4.08
4206 5395 1.340017 GGCCCTAGTCTTTCATGTGCA 60.340 52.381 0.00 0.00 0.00 4.57
4207 5396 1.383523 GGCCCTAGTCTTTCATGTGC 58.616 55.000 0.00 0.00 0.00 4.57
4208 5397 1.561542 AGGGCCCTAGTCTTTCATGTG 59.438 52.381 27.42 0.00 0.00 3.21
4209 5398 1.561542 CAGGGCCCTAGTCTTTCATGT 59.438 52.381 28.13 0.00 0.00 3.21
4210 5399 1.561542 ACAGGGCCCTAGTCTTTCATG 59.438 52.381 28.13 11.78 0.00 3.07
4211 5400 1.972588 ACAGGGCCCTAGTCTTTCAT 58.027 50.000 28.13 0.00 0.00 2.57
4212 5401 1.742308 AACAGGGCCCTAGTCTTTCA 58.258 50.000 28.13 0.00 0.00 2.69
4213 5402 2.039879 TCAAACAGGGCCCTAGTCTTTC 59.960 50.000 28.13 0.00 0.00 2.62
4214 5403 2.062636 TCAAACAGGGCCCTAGTCTTT 58.937 47.619 28.13 16.33 0.00 2.52
4215 5404 1.742308 TCAAACAGGGCCCTAGTCTT 58.258 50.000 28.13 17.04 0.00 3.01
4219 5408 1.490490 TGCTATCAAACAGGGCCCTAG 59.510 52.381 28.13 21.28 0.00 3.02
4222 5411 1.478105 CTTTGCTATCAAACAGGGCCC 59.522 52.381 16.46 16.46 37.28 5.80
4365 5575 6.591313 GCTAACAACTAGCCATCTAAACTC 57.409 41.667 0.00 0.00 46.46 3.01
4415 5628 1.742831 GCCGATTAGTTGGATGCAACA 59.257 47.619 28.72 12.21 37.52 3.33
4423 5636 0.664761 CTGCATGGCCGATTAGTTGG 59.335 55.000 0.00 0.00 0.00 3.77
4481 5694 2.227968 GAAGCCAGCTACGCGTGTTG 62.228 60.000 24.59 18.57 0.00 3.33
4509 5731 1.006832 CCAAGAATAACGCACCGGAG 58.993 55.000 9.46 0.00 0.00 4.63
4512 5734 0.096976 CTGCCAAGAATAACGCACCG 59.903 55.000 0.00 0.00 0.00 4.94
4552 5774 4.938080 TGGAAGTGCTTTATTCGCAAAAA 58.062 34.783 0.00 0.00 39.39 1.94
4553 5775 4.576216 TGGAAGTGCTTTATTCGCAAAA 57.424 36.364 0.00 0.00 39.39 2.44
4554 5776 4.782019 ATGGAAGTGCTTTATTCGCAAA 57.218 36.364 0.00 0.00 39.39 3.68
4555 5777 4.201773 CGTATGGAAGTGCTTTATTCGCAA 60.202 41.667 0.00 0.00 39.39 4.85
4556 5778 3.308595 CGTATGGAAGTGCTTTATTCGCA 59.691 43.478 0.00 0.00 34.52 5.10
4557 5779 3.844943 GCGTATGGAAGTGCTTTATTCGC 60.845 47.826 13.40 13.40 33.37 4.70
4558 5780 3.601586 CGCGTATGGAAGTGCTTTATTCG 60.602 47.826 0.00 0.00 0.00 3.34
4559 5781 3.308866 ACGCGTATGGAAGTGCTTTATTC 59.691 43.478 11.67 0.00 0.00 1.75
4560 5782 3.063452 CACGCGTATGGAAGTGCTTTATT 59.937 43.478 13.44 0.00 0.00 1.40
4561 5783 2.607635 CACGCGTATGGAAGTGCTTTAT 59.392 45.455 13.44 0.00 0.00 1.40
4562 5784 1.996898 CACGCGTATGGAAGTGCTTTA 59.003 47.619 13.44 0.00 0.00 1.85
4563 5785 0.796312 CACGCGTATGGAAGTGCTTT 59.204 50.000 13.44 0.00 0.00 3.51
4564 5786 2.456000 CACGCGTATGGAAGTGCTT 58.544 52.632 13.44 0.00 0.00 3.91
4565 5787 4.185413 CACGCGTATGGAAGTGCT 57.815 55.556 13.44 0.00 0.00 4.40
4569 5791 2.469826 TCTTATGCACGCGTATGGAAG 58.530 47.619 13.44 13.70 0.00 3.46
4571 5793 2.198406 GTTCTTATGCACGCGTATGGA 58.802 47.619 13.44 1.24 0.00 3.41
4738 5989 7.615403 AGAGTATTCTCAAAACTGTCTGCATA 58.385 34.615 1.92 0.00 42.66 3.14
4739 5990 6.471146 AGAGTATTCTCAAAACTGTCTGCAT 58.529 36.000 1.92 0.00 42.66 3.96
4740 5991 5.858381 AGAGTATTCTCAAAACTGTCTGCA 58.142 37.500 1.92 0.00 42.66 4.41
4741 5992 7.093992 ACTAGAGTATTCTCAAAACTGTCTGC 58.906 38.462 0.00 0.00 42.66 4.26
4742 5993 9.482627 AAACTAGAGTATTCTCAAAACTGTCTG 57.517 33.333 0.00 0.00 42.66 3.51
4783 6043 2.289444 TGACCTGTTTGGCTAGCACTAC 60.289 50.000 18.24 10.88 40.22 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.