Multiple sequence alignment - TraesCS7D01G252700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G252700 chr7D 100.000 4737 0 0 1 4737 228009375 228014111 0.000000e+00 8748.0
1 TraesCS7D01G252700 chr7D 97.742 310 4 3 274 582 453633294 453632987 9.030000e-147 531.0
2 TraesCS7D01G252700 chr7D 97.419 310 6 2 274 582 240349316 240349624 1.170000e-145 527.0
3 TraesCS7D01G252700 chr7D 79.581 191 21 7 4427 4600 625726095 625726284 2.320000e-23 121.0
4 TraesCS7D01G252700 chr7B 95.301 4171 141 21 580 4737 199494918 199499046 0.000000e+00 6565.0
5 TraesCS7D01G252700 chr7A 96.693 2117 66 4 2580 4693 240087773 240089888 0.000000e+00 3518.0
6 TraesCS7D01G252700 chr7A 92.878 2022 92 24 580 2588 240085338 240087320 0.000000e+00 2889.0
7 TraesCS7D01G252700 chr7A 90.909 132 11 1 4606 4736 240089890 240090021 4.870000e-40 176.0
8 TraesCS7D01G252700 chr6D 97.742 310 5 2 274 582 128324145 128324453 2.510000e-147 532.0
9 TraesCS7D01G252700 chr2D 97.742 310 5 2 274 582 94946544 94946852 2.510000e-147 532.0
10 TraesCS7D01G252700 chr2D 96.835 316 8 2 274 588 366760273 366759959 1.170000e-145 527.0
11 TraesCS7D01G252700 chr2D 83.756 197 18 4 4224 4406 589535630 589535434 1.750000e-39 174.0
12 TraesCS7D01G252700 chr2D 81.592 201 22 8 4224 4410 68755122 68755321 8.210000e-33 152.0
13 TraesCS7D01G252700 chr5D 97.735 309 6 1 274 582 82053970 82053663 9.030000e-147 531.0
14 TraesCS7D01G252700 chr5D 97.125 313 7 2 271 582 341111994 341112305 1.170000e-145 527.0
15 TraesCS7D01G252700 chr5D 83.333 198 18 4 4224 4406 455764694 455764891 8.150000e-38 169.0
16 TraesCS7D01G252700 chr5D 92.453 53 4 0 4492 4544 294162017 294162069 5.080000e-10 76.8
17 TraesCS7D01G252700 chr1D 97.735 309 5 2 274 581 237617949 237617642 9.030000e-147 531.0
18 TraesCS7D01G252700 chr1D 97.742 310 4 3 276 584 493486117 493486424 9.030000e-147 531.0
19 TraesCS7D01G252700 chr3D 84.574 188 27 2 4224 4409 512988650 512988463 8.100000e-43 185.0
20 TraesCS7D01G252700 chr3D 82.587 201 21 3 4224 4410 526937252 526937452 1.050000e-36 165.0
21 TraesCS7D01G252700 chr6A 83.163 196 20 2 4224 4406 235028083 235028278 2.930000e-37 167.0
22 TraesCS7D01G252700 chr3B 82.090 201 22 3 4224 4410 276788450 276788650 4.910000e-35 159.0
23 TraesCS7D01G252700 chr3B 87.037 54 6 1 4425 4477 34043283 34043230 5.120000e-05 60.2
24 TraesCS7D01G252700 chr2A 90.000 110 9 2 4222 4330 249746924 249747032 1.780000e-29 141.0
25 TraesCS7D01G252700 chr5B 78.788 231 28 9 4405 4615 335370755 335370984 8.270000e-28 135.0
26 TraesCS7D01G252700 chr2B 91.837 49 4 0 4427 4475 549502517 549502565 8.510000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G252700 chr7D 228009375 228014111 4736 False 8748.000000 8748 100.000000 1 4737 1 chr7D.!!$F1 4736
1 TraesCS7D01G252700 chr7B 199494918 199499046 4128 False 6565.000000 6565 95.301000 580 4737 1 chr7B.!!$F1 4157
2 TraesCS7D01G252700 chr7A 240085338 240090021 4683 False 2194.333333 3518 93.493333 580 4736 3 chr7A.!!$F1 4156

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
187 188 0.036732 AACCATGTCGCTGTCCATGT 59.963 50.0 0.00 0.00 37.37 3.21 F
1248 1260 0.034337 TGTTCGGGTAGTGGTTGCTC 59.966 55.0 0.00 0.00 0.00 4.26 F
1820 1839 0.250234 TATCTGGTGGTGTGCAGAGC 59.750 55.0 6.03 6.03 0.00 4.09 F
1978 1997 1.084370 ACTAGGCGCGATTTGCTCAC 61.084 55.0 12.10 0.00 43.27 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1639 1658 0.033504 GACCTTCGACTGTCAGGCAA 59.966 55.000 6.49 0.00 0.0 4.52 R
2178 2197 1.004745 CTGGTGTGGATTGCTAAGGGT 59.995 52.381 0.00 0.00 0.0 4.34 R
3629 4111 3.008813 AGTCTCTGGATGTTGAACTGCAT 59.991 43.478 0.00 0.00 0.0 3.96 R
3792 4274 9.104965 CATATCCTTGGTTATTTTTGTCGACTA 57.895 33.333 17.92 6.32 0.0 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.394712 CCCGTTCCCTCAAGCGCT 62.395 66.667 2.64 2.64 0.00 5.92
37 38 2.358737 CCGTTCCCTCAAGCGCTT 60.359 61.111 18.98 18.98 0.00 4.68
38 39 2.680913 CCGTTCCCTCAAGCGCTTG 61.681 63.158 38.25 38.25 41.71 4.01
39 40 1.961277 CGTTCCCTCAAGCGCTTGT 60.961 57.895 40.37 13.29 41.16 3.16
40 41 1.869690 GTTCCCTCAAGCGCTTGTC 59.130 57.895 40.37 23.59 41.16 3.18
41 42 1.302511 TTCCCTCAAGCGCTTGTCC 60.303 57.895 40.37 0.00 41.16 4.02
42 43 2.747855 CCCTCAAGCGCTTGTCCC 60.748 66.667 40.37 0.00 41.16 4.46
43 44 2.747855 CCTCAAGCGCTTGTCCCC 60.748 66.667 40.37 0.00 41.16 4.81
44 45 2.032528 CTCAAGCGCTTGTCCCCA 59.967 61.111 40.37 24.96 41.16 4.96
45 46 2.281484 TCAAGCGCTTGTCCCCAC 60.281 61.111 40.37 0.00 41.16 4.61
46 47 2.594303 CAAGCGCTTGTCCCCACA 60.594 61.111 36.23 0.00 35.92 4.17
47 48 2.281761 AAGCGCTTGTCCCCACAG 60.282 61.111 24.40 0.00 32.71 3.66
48 49 3.850098 AAGCGCTTGTCCCCACAGG 62.850 63.158 24.40 0.00 32.71 4.00
52 53 2.034687 CTTGTCCCCACAGGCAGG 59.965 66.667 0.00 0.00 32.71 4.85
53 54 4.284550 TTGTCCCCACAGGCAGGC 62.285 66.667 0.00 0.00 32.71 4.85
62 63 4.827087 CAGGCAGGCGACGCTCAT 62.827 66.667 20.77 4.24 0.00 2.90
63 64 4.521062 AGGCAGGCGACGCTCATC 62.521 66.667 20.77 2.37 0.00 2.92
71 72 4.899239 GACGCTCATCCCGGCCAG 62.899 72.222 2.24 0.00 0.00 4.85
75 76 4.864334 CTCATCCCGGCCAGCACC 62.864 72.222 2.24 0.00 0.00 5.01
83 84 4.362476 GGCCAGCACCCGCAAAAG 62.362 66.667 0.00 0.00 42.27 2.27
85 86 4.362476 CCAGCACCCGCAAAAGCC 62.362 66.667 0.00 0.00 42.27 4.35
86 87 4.362476 CAGCACCCGCAAAAGCCC 62.362 66.667 0.00 0.00 42.27 5.19
104 105 4.711949 CCCGCCAGCAGCTCTTGT 62.712 66.667 0.00 0.00 40.39 3.16
105 106 2.670934 CCGCCAGCAGCTCTTGTT 60.671 61.111 0.00 0.00 40.39 2.83
106 107 2.559840 CGCCAGCAGCTCTTGTTG 59.440 61.111 0.00 0.00 40.39 3.33
107 108 2.256591 CGCCAGCAGCTCTTGTTGT 61.257 57.895 0.00 0.00 40.39 3.32
108 109 1.789078 CGCCAGCAGCTCTTGTTGTT 61.789 55.000 0.00 0.00 40.39 2.83
109 110 0.318445 GCCAGCAGCTCTTGTTGTTG 60.318 55.000 0.00 0.00 36.38 3.33
110 111 1.027357 CCAGCAGCTCTTGTTGTTGT 58.973 50.000 0.00 0.00 36.38 3.32
111 112 1.406539 CCAGCAGCTCTTGTTGTTGTT 59.593 47.619 0.00 0.00 36.38 2.83
112 113 2.159198 CCAGCAGCTCTTGTTGTTGTTT 60.159 45.455 0.00 0.00 36.38 2.83
113 114 3.514645 CAGCAGCTCTTGTTGTTGTTTT 58.485 40.909 0.00 0.00 33.74 2.43
114 115 3.928375 CAGCAGCTCTTGTTGTTGTTTTT 59.072 39.130 0.00 0.00 33.74 1.94
134 135 4.335400 TTTCAAAAGAAAGGCCATGTCC 57.665 40.909 5.01 0.00 0.00 4.02
135 136 1.885887 TCAAAAGAAAGGCCATGTCCG 59.114 47.619 5.01 0.00 0.00 4.79
136 137 0.603065 AAAAGAAAGGCCATGTCCGC 59.397 50.000 5.01 0.00 0.00 5.54
137 138 0.251341 AAAGAAAGGCCATGTCCGCT 60.251 50.000 5.01 0.00 0.00 5.52
138 139 0.678048 AAGAAAGGCCATGTCCGCTC 60.678 55.000 5.01 0.00 0.00 5.03
139 140 1.377202 GAAAGGCCATGTCCGCTCA 60.377 57.895 5.01 0.00 0.00 4.26
140 141 0.960364 GAAAGGCCATGTCCGCTCAA 60.960 55.000 5.01 0.00 0.00 3.02
141 142 0.539438 AAAGGCCATGTCCGCTCAAA 60.539 50.000 5.01 0.00 0.00 2.69
142 143 0.539438 AAGGCCATGTCCGCTCAAAA 60.539 50.000 5.01 0.00 0.00 2.44
143 144 0.539438 AGGCCATGTCCGCTCAAAAA 60.539 50.000 5.01 0.00 0.00 1.94
144 145 0.532115 GGCCATGTCCGCTCAAAAAT 59.468 50.000 0.00 0.00 0.00 1.82
145 146 1.632422 GCCATGTCCGCTCAAAAATG 58.368 50.000 0.00 0.00 0.00 2.32
146 147 1.736696 GCCATGTCCGCTCAAAAATGG 60.737 52.381 0.00 0.00 38.07 3.16
147 148 1.135024 CCATGTCCGCTCAAAAATGGG 60.135 52.381 0.00 0.00 32.61 4.00
148 149 1.545582 CATGTCCGCTCAAAAATGGGT 59.454 47.619 0.00 0.00 0.00 4.51
149 150 1.698506 TGTCCGCTCAAAAATGGGTT 58.301 45.000 0.00 0.00 0.00 4.11
150 151 1.339610 TGTCCGCTCAAAAATGGGTTG 59.660 47.619 0.00 0.00 0.00 3.77
151 152 0.316841 TCCGCTCAAAAATGGGTTGC 59.683 50.000 0.00 0.00 0.00 4.17
152 153 0.318120 CCGCTCAAAAATGGGTTGCT 59.682 50.000 0.00 0.00 0.00 3.91
153 154 1.669795 CCGCTCAAAAATGGGTTGCTC 60.670 52.381 0.00 0.00 0.00 4.26
154 155 1.701704 GCTCAAAAATGGGTTGCTCG 58.298 50.000 0.00 0.00 0.00 5.03
155 156 1.000274 GCTCAAAAATGGGTTGCTCGT 60.000 47.619 0.00 0.00 0.00 4.18
156 157 2.664916 CTCAAAAATGGGTTGCTCGTG 58.335 47.619 0.00 0.00 0.00 4.35
157 158 2.028130 TCAAAAATGGGTTGCTCGTGT 58.972 42.857 0.00 0.00 0.00 4.49
158 159 2.428890 TCAAAAATGGGTTGCTCGTGTT 59.571 40.909 0.00 0.00 0.00 3.32
159 160 2.507339 AAAATGGGTTGCTCGTGTTG 57.493 45.000 0.00 0.00 0.00 3.33
160 161 0.673437 AAATGGGTTGCTCGTGTTGG 59.327 50.000 0.00 0.00 0.00 3.77
161 162 0.179004 AATGGGTTGCTCGTGTTGGA 60.179 50.000 0.00 0.00 0.00 3.53
162 163 0.038166 ATGGGTTGCTCGTGTTGGAT 59.962 50.000 0.00 0.00 0.00 3.41
163 164 0.179004 TGGGTTGCTCGTGTTGGATT 60.179 50.000 0.00 0.00 0.00 3.01
164 165 0.521735 GGGTTGCTCGTGTTGGATTC 59.478 55.000 0.00 0.00 0.00 2.52
165 166 1.234821 GGTTGCTCGTGTTGGATTCA 58.765 50.000 0.00 0.00 0.00 2.57
166 167 1.069227 GGTTGCTCGTGTTGGATTCAC 60.069 52.381 0.00 0.00 0.00 3.18
167 168 1.601903 GTTGCTCGTGTTGGATTCACA 59.398 47.619 0.00 0.00 35.79 3.58
168 169 1.960417 TGCTCGTGTTGGATTCACAA 58.040 45.000 0.00 0.00 35.79 3.33
169 170 2.293170 TGCTCGTGTTGGATTCACAAA 58.707 42.857 0.00 0.00 35.79 2.83
170 171 2.032799 TGCTCGTGTTGGATTCACAAAC 59.967 45.455 0.00 0.00 35.79 2.93
171 172 2.604614 GCTCGTGTTGGATTCACAAACC 60.605 50.000 0.00 0.00 35.79 3.27
172 173 2.616376 CTCGTGTTGGATTCACAAACCA 59.384 45.455 0.00 0.00 35.79 3.67
173 174 3.218453 TCGTGTTGGATTCACAAACCAT 58.782 40.909 0.00 0.00 35.79 3.55
174 175 3.004210 TCGTGTTGGATTCACAAACCATG 59.996 43.478 0.00 0.00 35.79 3.66
175 176 3.243367 CGTGTTGGATTCACAAACCATGT 60.243 43.478 0.00 0.00 45.34 3.21
176 177 4.298332 GTGTTGGATTCACAAACCATGTC 58.702 43.478 0.00 0.00 41.46 3.06
177 178 3.004210 TGTTGGATTCACAAACCATGTCG 59.996 43.478 0.00 0.00 41.46 4.35
178 179 1.539388 TGGATTCACAAACCATGTCGC 59.461 47.619 0.00 0.00 41.46 5.19
179 180 1.812571 GGATTCACAAACCATGTCGCT 59.187 47.619 0.00 0.00 41.46 4.93
180 181 2.414559 GGATTCACAAACCATGTCGCTG 60.415 50.000 0.00 0.00 41.46 5.18
181 182 1.674359 TTCACAAACCATGTCGCTGT 58.326 45.000 0.00 0.00 41.46 4.40
182 183 1.225855 TCACAAACCATGTCGCTGTC 58.774 50.000 0.00 0.00 41.46 3.51
183 184 0.238289 CACAAACCATGTCGCTGTCC 59.762 55.000 0.00 0.00 41.46 4.02
184 185 0.179032 ACAAACCATGTCGCTGTCCA 60.179 50.000 0.00 0.00 37.96 4.02
185 186 1.167851 CAAACCATGTCGCTGTCCAT 58.832 50.000 0.00 0.00 0.00 3.41
186 187 1.135603 CAAACCATGTCGCTGTCCATG 60.136 52.381 0.00 0.00 38.51 3.66
187 188 0.036732 AACCATGTCGCTGTCCATGT 59.963 50.000 0.00 0.00 37.37 3.21
188 189 0.391661 ACCATGTCGCTGTCCATGTC 60.392 55.000 0.00 0.00 37.37 3.06
189 190 1.423721 CCATGTCGCTGTCCATGTCG 61.424 60.000 0.00 0.00 37.37 4.35
190 191 0.737367 CATGTCGCTGTCCATGTCGT 60.737 55.000 0.00 0.00 34.97 4.34
191 192 0.737367 ATGTCGCTGTCCATGTCGTG 60.737 55.000 0.00 0.00 0.00 4.35
192 193 1.372997 GTCGCTGTCCATGTCGTGT 60.373 57.895 0.00 0.00 0.00 4.49
193 194 1.080772 TCGCTGTCCATGTCGTGTC 60.081 57.895 0.00 0.00 0.00 3.67
194 195 2.094659 CGCTGTCCATGTCGTGTCC 61.095 63.158 0.00 0.00 0.00 4.02
195 196 2.094659 GCTGTCCATGTCGTGTCCG 61.095 63.158 0.00 0.00 0.00 4.79
196 197 2.048597 TGTCCATGTCGTGTCCGC 60.049 61.111 0.00 0.00 0.00 5.54
197 198 2.261671 GTCCATGTCGTGTCCGCT 59.738 61.111 0.00 0.00 0.00 5.52
198 199 2.094659 GTCCATGTCGTGTCCGCTG 61.095 63.158 0.00 0.00 0.00 5.18
199 200 2.048222 CCATGTCGTGTCCGCTGT 60.048 61.111 0.00 0.00 0.00 4.40
200 201 2.094659 CCATGTCGTGTCCGCTGTC 61.095 63.158 0.00 0.00 0.00 3.51
201 202 2.094659 CATGTCGTGTCCGCTGTCC 61.095 63.158 0.00 0.00 0.00 4.02
202 203 3.626680 ATGTCGTGTCCGCTGTCCG 62.627 63.158 0.00 0.00 0.00 4.79
203 204 4.338539 GTCGTGTCCGCTGTCCGT 62.339 66.667 0.00 0.00 34.38 4.69
204 205 3.598715 TCGTGTCCGCTGTCCGTT 61.599 61.111 0.00 0.00 34.38 4.44
205 206 2.660552 CGTGTCCGCTGTCCGTTT 60.661 61.111 0.00 0.00 34.38 3.60
206 207 2.241880 CGTGTCCGCTGTCCGTTTT 61.242 57.895 0.00 0.00 34.38 2.43
207 208 1.278637 GTGTCCGCTGTCCGTTTTG 59.721 57.895 0.00 0.00 34.38 2.44
208 209 2.251371 GTCCGCTGTCCGTTTTGC 59.749 61.111 0.00 0.00 34.38 3.68
209 210 2.975799 TCCGCTGTCCGTTTTGCC 60.976 61.111 0.00 0.00 34.38 4.52
210 211 4.383602 CCGCTGTCCGTTTTGCCG 62.384 66.667 0.00 0.00 34.38 5.69
211 212 3.342627 CGCTGTCCGTTTTGCCGA 61.343 61.111 0.00 0.00 0.00 5.54
212 213 2.677003 CGCTGTCCGTTTTGCCGAT 61.677 57.895 0.00 0.00 0.00 4.18
213 214 1.134694 GCTGTCCGTTTTGCCGATC 59.865 57.895 0.00 0.00 0.00 3.69
214 215 1.794222 CTGTCCGTTTTGCCGATCC 59.206 57.895 0.00 0.00 0.00 3.36
215 216 0.953471 CTGTCCGTTTTGCCGATCCA 60.953 55.000 0.00 0.00 0.00 3.41
216 217 0.535328 TGTCCGTTTTGCCGATCCAA 60.535 50.000 0.00 0.00 0.00 3.53
217 218 0.594110 GTCCGTTTTGCCGATCCAAA 59.406 50.000 0.00 0.00 33.21 3.28
218 219 1.201414 GTCCGTTTTGCCGATCCAAAT 59.799 47.619 0.00 0.00 34.92 2.32
219 220 1.201181 TCCGTTTTGCCGATCCAAATG 59.799 47.619 0.00 0.00 34.92 2.32
220 221 1.627879 CGTTTTGCCGATCCAAATGG 58.372 50.000 0.00 0.00 34.92 3.16
257 258 6.405278 AAAAAGGGACACAATTTAGGTCAG 57.595 37.500 0.00 0.00 33.26 3.51
258 259 4.724279 AAGGGACACAATTTAGGTCAGT 57.276 40.909 0.00 0.00 33.26 3.41
259 260 4.021102 AGGGACACAATTTAGGTCAGTG 57.979 45.455 0.00 0.00 36.34 3.66
260 261 2.488153 GGGACACAATTTAGGTCAGTGC 59.512 50.000 0.00 0.00 33.69 4.40
261 262 2.159627 GGACACAATTTAGGTCAGTGCG 59.840 50.000 0.00 0.00 33.69 5.34
262 263 2.806244 GACACAATTTAGGTCAGTGCGT 59.194 45.455 0.00 0.00 33.69 5.24
263 264 3.211045 ACACAATTTAGGTCAGTGCGTT 58.789 40.909 0.00 0.00 33.69 4.84
264 265 3.003275 ACACAATTTAGGTCAGTGCGTTG 59.997 43.478 0.00 0.00 33.69 4.10
265 266 2.552315 ACAATTTAGGTCAGTGCGTTGG 59.448 45.455 0.00 0.00 0.00 3.77
266 267 2.811431 CAATTTAGGTCAGTGCGTTGGA 59.189 45.455 0.00 0.00 0.00 3.53
267 268 2.163818 TTTAGGTCAGTGCGTTGGAG 57.836 50.000 0.00 0.00 0.00 3.86
268 269 1.045407 TTAGGTCAGTGCGTTGGAGT 58.955 50.000 0.00 0.00 0.00 3.85
269 270 1.045407 TAGGTCAGTGCGTTGGAGTT 58.955 50.000 0.00 0.00 0.00 3.01
270 271 0.532862 AGGTCAGTGCGTTGGAGTTG 60.533 55.000 0.00 0.00 0.00 3.16
271 272 1.279840 GTCAGTGCGTTGGAGTTGC 59.720 57.895 0.00 0.00 0.00 4.17
272 273 1.891919 TCAGTGCGTTGGAGTTGCC 60.892 57.895 0.00 0.00 37.10 4.52
273 274 1.893808 CAGTGCGTTGGAGTTGCCT 60.894 57.895 0.00 0.00 37.63 4.75
274 275 0.602638 CAGTGCGTTGGAGTTGCCTA 60.603 55.000 0.00 0.00 37.63 3.93
275 276 0.107831 AGTGCGTTGGAGTTGCCTAA 59.892 50.000 0.00 0.00 37.63 2.69
276 277 0.517316 GTGCGTTGGAGTTGCCTAAG 59.483 55.000 0.00 0.00 37.63 2.18
277 278 0.605319 TGCGTTGGAGTTGCCTAAGG 60.605 55.000 0.00 0.00 37.63 2.69
278 279 1.305930 GCGTTGGAGTTGCCTAAGGG 61.306 60.000 0.00 0.00 37.63 3.95
293 294 5.982890 CCTAAGGGCTTCTTTGATTCAAA 57.017 39.130 11.19 11.19 36.93 2.69
307 308 7.838079 TTTGATTCAAAGGATTCTCAAAGGA 57.162 32.000 7.74 0.00 31.21 3.36
308 309 7.838079 TTGATTCAAAGGATTCTCAAAGGAA 57.162 32.000 0.00 0.00 0.00 3.36
309 310 8.426569 TTGATTCAAAGGATTCTCAAAGGAAT 57.573 30.769 0.00 0.00 38.47 3.01
310 311 8.426569 TGATTCAAAGGATTCTCAAAGGAATT 57.573 30.769 0.00 0.00 36.24 2.17
311 312 8.873144 TGATTCAAAGGATTCTCAAAGGAATTT 58.127 29.630 0.00 0.00 36.24 1.82
312 313 9.716531 GATTCAAAGGATTCTCAAAGGAATTTT 57.283 29.630 0.00 0.00 36.24 1.82
315 316 9.586732 TCAAAGGATTCTCAAAGGAATTTTAGA 57.413 29.630 0.00 0.00 36.24 2.10
316 317 9.852091 CAAAGGATTCTCAAAGGAATTTTAGAG 57.148 33.333 0.00 0.00 36.24 2.43
317 318 8.586879 AAGGATTCTCAAAGGAATTTTAGAGG 57.413 34.615 0.00 0.00 36.24 3.69
318 319 7.933223 AGGATTCTCAAAGGAATTTTAGAGGA 58.067 34.615 0.00 0.00 36.24 3.71
319 320 8.564370 AGGATTCTCAAAGGAATTTTAGAGGAT 58.436 33.333 0.00 0.00 36.24 3.24
320 321 9.194972 GGATTCTCAAAGGAATTTTAGAGGATT 57.805 33.333 0.00 0.00 36.24 3.01
322 323 9.987726 ATTCTCAAAGGAATTTTAGAGGATTCT 57.012 29.630 0.00 0.00 32.69 2.40
356 357 8.310406 GGAATTTTTCCTATCTTGGTTGTTTG 57.690 34.615 0.00 0.00 46.57 2.93
357 358 8.147704 GGAATTTTTCCTATCTTGGTTGTTTGA 58.852 33.333 0.00 0.00 46.57 2.69
358 359 9.710900 GAATTTTTCCTATCTTGGTTGTTTGAT 57.289 29.630 0.00 0.00 0.00 2.57
360 361 9.710900 ATTTTTCCTATCTTGGTTGTTTGATTC 57.289 29.630 0.00 0.00 0.00 2.52
361 362 6.494893 TTCCTATCTTGGTTGTTTGATTCG 57.505 37.500 0.00 0.00 0.00 3.34
362 363 5.556915 TCCTATCTTGGTTGTTTGATTCGT 58.443 37.500 0.00 0.00 0.00 3.85
363 364 6.703319 TCCTATCTTGGTTGTTTGATTCGTA 58.297 36.000 0.00 0.00 0.00 3.43
364 365 6.816640 TCCTATCTTGGTTGTTTGATTCGTAG 59.183 38.462 0.00 0.00 0.00 3.51
365 366 5.880054 ATCTTGGTTGTTTGATTCGTAGG 57.120 39.130 0.00 0.00 0.00 3.18
366 367 4.963373 TCTTGGTTGTTTGATTCGTAGGA 58.037 39.130 0.00 0.00 0.00 2.94
367 368 5.556915 TCTTGGTTGTTTGATTCGTAGGAT 58.443 37.500 0.00 0.00 0.00 3.24
368 369 6.001460 TCTTGGTTGTTTGATTCGTAGGATT 58.999 36.000 0.00 0.00 0.00 3.01
369 370 5.621197 TGGTTGTTTGATTCGTAGGATTG 57.379 39.130 0.00 0.00 0.00 2.67
370 371 5.067273 TGGTTGTTTGATTCGTAGGATTGT 58.933 37.500 0.00 0.00 0.00 2.71
371 372 6.231951 TGGTTGTTTGATTCGTAGGATTGTA 58.768 36.000 0.00 0.00 0.00 2.41
372 373 6.711194 TGGTTGTTTGATTCGTAGGATTGTAA 59.289 34.615 0.00 0.00 0.00 2.41
373 374 7.228906 TGGTTGTTTGATTCGTAGGATTGTAAA 59.771 33.333 0.00 0.00 0.00 2.01
374 375 7.536281 GGTTGTTTGATTCGTAGGATTGTAAAC 59.464 37.037 0.00 0.00 0.00 2.01
375 376 7.136289 TGTTTGATTCGTAGGATTGTAAACC 57.864 36.000 0.00 0.00 0.00 3.27
376 377 6.711194 TGTTTGATTCGTAGGATTGTAAACCA 59.289 34.615 0.00 0.00 0.00 3.67
377 378 7.392113 TGTTTGATTCGTAGGATTGTAAACCAT 59.608 33.333 0.00 0.00 0.00 3.55
378 379 8.885722 GTTTGATTCGTAGGATTGTAAACCATA 58.114 33.333 0.00 0.00 0.00 2.74
379 380 8.657074 TTGATTCGTAGGATTGTAAACCATAG 57.343 34.615 0.00 0.00 0.00 2.23
380 381 7.214381 TGATTCGTAGGATTGTAAACCATAGG 58.786 38.462 0.00 0.00 0.00 2.57
381 382 6.795144 TTCGTAGGATTGTAAACCATAGGA 57.205 37.500 0.00 0.00 0.00 2.94
382 383 6.795144 TCGTAGGATTGTAAACCATAGGAA 57.205 37.500 0.00 0.00 0.00 3.36
383 384 7.369551 TCGTAGGATTGTAAACCATAGGAAT 57.630 36.000 0.00 0.00 0.00 3.01
384 385 7.798071 TCGTAGGATTGTAAACCATAGGAATT 58.202 34.615 0.00 0.00 0.00 2.17
385 386 8.269317 TCGTAGGATTGTAAACCATAGGAATTT 58.731 33.333 0.00 0.00 0.00 1.82
386 387 8.899771 CGTAGGATTGTAAACCATAGGAATTTT 58.100 33.333 0.00 0.00 0.00 1.82
405 406 8.721019 GAATTTTTCCATAGGATTCATTTGCA 57.279 30.769 0.00 0.00 0.00 4.08
406 407 8.496707 AATTTTTCCATAGGATTCATTTGCAC 57.503 30.769 0.00 0.00 0.00 4.57
407 408 6.855763 TTTTCCATAGGATTCATTTGCACT 57.144 33.333 0.00 0.00 0.00 4.40
408 409 7.953005 TTTTCCATAGGATTCATTTGCACTA 57.047 32.000 0.00 0.00 0.00 2.74
409 410 7.572523 TTTCCATAGGATTCATTTGCACTAG 57.427 36.000 0.00 0.00 0.00 2.57
410 411 6.499106 TCCATAGGATTCATTTGCACTAGA 57.501 37.500 0.00 0.00 0.00 2.43
411 412 7.083062 TCCATAGGATTCATTTGCACTAGAT 57.917 36.000 0.00 0.00 0.00 1.98
412 413 7.520798 TCCATAGGATTCATTTGCACTAGATT 58.479 34.615 0.00 0.00 0.00 2.40
413 414 8.000709 TCCATAGGATTCATTTGCACTAGATTT 58.999 33.333 0.00 0.00 0.00 2.17
414 415 8.295288 CCATAGGATTCATTTGCACTAGATTTC 58.705 37.037 0.00 0.00 0.00 2.17
415 416 8.843262 CATAGGATTCATTTGCACTAGATTTCA 58.157 33.333 0.00 0.00 0.00 2.69
416 417 7.893124 AGGATTCATTTGCACTAGATTTCAT 57.107 32.000 0.00 0.00 0.00 2.57
417 418 8.985315 AGGATTCATTTGCACTAGATTTCATA 57.015 30.769 0.00 0.00 0.00 2.15
418 419 9.064706 AGGATTCATTTGCACTAGATTTCATAG 57.935 33.333 0.00 0.00 0.00 2.23
419 420 8.295288 GGATTCATTTGCACTAGATTTCATAGG 58.705 37.037 0.00 0.00 0.00 2.57
420 421 8.985315 ATTCATTTGCACTAGATTTCATAGGA 57.015 30.769 0.00 0.00 0.00 2.94
421 422 8.806429 TTCATTTGCACTAGATTTCATAGGAA 57.194 30.769 0.00 0.00 0.00 3.36
422 423 8.806429 TCATTTGCACTAGATTTCATAGGAAA 57.194 30.769 4.85 4.85 46.36 3.13
423 424 8.677300 TCATTTGCACTAGATTTCATAGGAAAC 58.323 33.333 4.42 0.03 45.22 2.78
424 425 7.994425 TTTGCACTAGATTTCATAGGAAACA 57.006 32.000 4.42 0.00 45.22 2.83
425 426 8.579850 TTTGCACTAGATTTCATAGGAAACAT 57.420 30.769 4.42 0.00 45.22 2.71
426 427 7.792374 TGCACTAGATTTCATAGGAAACATC 57.208 36.000 4.42 0.07 45.22 3.06
427 428 6.767902 TGCACTAGATTTCATAGGAAACATCC 59.232 38.462 4.42 0.00 45.22 3.51
428 429 6.205658 GCACTAGATTTCATAGGAAACATCCC 59.794 42.308 4.42 0.00 45.22 3.85
429 430 7.282585 CACTAGATTTCATAGGAAACATCCCA 58.717 38.462 4.42 0.00 45.22 4.37
430 431 7.941238 CACTAGATTTCATAGGAAACATCCCAT 59.059 37.037 4.42 0.00 45.22 4.00
431 432 8.160106 ACTAGATTTCATAGGAAACATCCCATC 58.840 37.037 4.42 0.00 45.22 3.51
432 433 6.310149 AGATTTCATAGGAAACATCCCATCC 58.690 40.000 4.42 0.00 45.22 3.51
433 434 5.464588 TTTCATAGGAAACATCCCATCCA 57.535 39.130 0.00 0.00 38.07 3.41
434 435 4.437682 TCATAGGAAACATCCCATCCAC 57.562 45.455 0.00 0.00 35.62 4.02
435 436 4.047166 TCATAGGAAACATCCCATCCACT 58.953 43.478 0.00 0.00 35.62 4.00
436 437 4.103153 TCATAGGAAACATCCCATCCACTC 59.897 45.833 0.00 0.00 35.62 3.51
437 438 2.278245 AGGAAACATCCCATCCACTCA 58.722 47.619 0.00 0.00 35.62 3.41
438 439 2.240667 AGGAAACATCCCATCCACTCAG 59.759 50.000 0.00 0.00 35.62 3.35
439 440 2.239654 GGAAACATCCCATCCACTCAGA 59.760 50.000 0.00 0.00 33.30 3.27
440 441 3.274288 GAAACATCCCATCCACTCAGAC 58.726 50.000 0.00 0.00 0.00 3.51
441 442 1.207791 ACATCCCATCCACTCAGACC 58.792 55.000 0.00 0.00 0.00 3.85
442 443 1.274069 ACATCCCATCCACTCAGACCT 60.274 52.381 0.00 0.00 0.00 3.85
443 444 1.415659 CATCCCATCCACTCAGACCTC 59.584 57.143 0.00 0.00 0.00 3.85
444 445 0.712979 TCCCATCCACTCAGACCTCT 59.287 55.000 0.00 0.00 0.00 3.69
445 446 1.079490 TCCCATCCACTCAGACCTCTT 59.921 52.381 0.00 0.00 0.00 2.85
446 447 1.912043 CCCATCCACTCAGACCTCTTT 59.088 52.381 0.00 0.00 0.00 2.52
447 448 2.355513 CCCATCCACTCAGACCTCTTTG 60.356 54.545 0.00 0.00 0.00 2.77
448 449 2.568956 CCATCCACTCAGACCTCTTTGA 59.431 50.000 0.00 0.00 0.00 2.69
449 450 3.008375 CCATCCACTCAGACCTCTTTGAA 59.992 47.826 0.00 0.00 0.00 2.69
450 451 4.505566 CCATCCACTCAGACCTCTTTGAAA 60.506 45.833 0.00 0.00 0.00 2.69
451 452 4.342862 TCCACTCAGACCTCTTTGAAAG 57.657 45.455 0.00 0.00 0.00 2.62
452 453 3.967326 TCCACTCAGACCTCTTTGAAAGA 59.033 43.478 7.49 7.49 35.87 2.52
453 454 4.408921 TCCACTCAGACCTCTTTGAAAGAA 59.591 41.667 9.15 0.00 37.02 2.52
454 455 5.072329 TCCACTCAGACCTCTTTGAAAGAAT 59.928 40.000 9.15 0.12 37.02 2.40
455 456 5.411053 CCACTCAGACCTCTTTGAAAGAATC 59.589 44.000 9.15 9.44 37.02 2.52
456 457 5.411053 CACTCAGACCTCTTTGAAAGAATCC 59.589 44.000 9.15 1.22 37.02 3.01
457 458 5.309282 ACTCAGACCTCTTTGAAAGAATCCT 59.691 40.000 9.15 3.41 37.02 3.24
458 459 5.555017 TCAGACCTCTTTGAAAGAATCCTG 58.445 41.667 9.15 14.05 37.02 3.86
459 460 4.155644 CAGACCTCTTTGAAAGAATCCTGC 59.844 45.833 9.15 0.00 37.02 4.85
460 461 3.077359 ACCTCTTTGAAAGAATCCTGCG 58.923 45.455 9.15 0.00 37.02 5.18
461 462 3.077359 CCTCTTTGAAAGAATCCTGCGT 58.923 45.455 9.15 0.00 37.02 5.24
462 463 3.503748 CCTCTTTGAAAGAATCCTGCGTT 59.496 43.478 9.15 0.00 37.02 4.84
463 464 4.022849 CCTCTTTGAAAGAATCCTGCGTTT 60.023 41.667 9.15 0.00 37.02 3.60
464 465 5.507985 CCTCTTTGAAAGAATCCTGCGTTTT 60.508 40.000 9.15 0.00 37.02 2.43
465 466 5.901552 TCTTTGAAAGAATCCTGCGTTTTT 58.098 33.333 4.94 0.00 33.83 1.94
486 487 7.928908 TTTTTCTATGCACAATCAAACACTC 57.071 32.000 0.00 0.00 0.00 3.51
487 488 4.926860 TCTATGCACAATCAAACACTCG 57.073 40.909 0.00 0.00 0.00 4.18
488 489 4.314961 TCTATGCACAATCAAACACTCGT 58.685 39.130 0.00 0.00 0.00 4.18
489 490 5.474825 TCTATGCACAATCAAACACTCGTA 58.525 37.500 0.00 0.00 0.00 3.43
490 491 3.870723 TGCACAATCAAACACTCGTAC 57.129 42.857 0.00 0.00 0.00 3.67
491 492 3.198872 TGCACAATCAAACACTCGTACA 58.801 40.909 0.00 0.00 0.00 2.90
492 493 3.623510 TGCACAATCAAACACTCGTACAA 59.376 39.130 0.00 0.00 0.00 2.41
493 494 4.274705 TGCACAATCAAACACTCGTACAAT 59.725 37.500 0.00 0.00 0.00 2.71
494 495 4.846137 GCACAATCAAACACTCGTACAATC 59.154 41.667 0.00 0.00 0.00 2.67
495 496 5.382303 CACAATCAAACACTCGTACAATCC 58.618 41.667 0.00 0.00 0.00 3.01
496 497 5.179368 CACAATCAAACACTCGTACAATCCT 59.821 40.000 0.00 0.00 0.00 3.24
497 498 5.179368 ACAATCAAACACTCGTACAATCCTG 59.821 40.000 0.00 0.00 0.00 3.86
498 499 4.330944 TCAAACACTCGTACAATCCTGT 57.669 40.909 0.00 0.00 39.75 4.00
499 500 5.456548 TCAAACACTCGTACAATCCTGTA 57.543 39.130 0.00 0.00 36.96 2.74
500 501 5.466819 TCAAACACTCGTACAATCCTGTAG 58.533 41.667 0.00 0.00 38.73 2.74
501 502 4.451629 AACACTCGTACAATCCTGTAGG 57.548 45.455 0.00 0.00 42.66 3.18
514 515 3.427573 TCCTGTAGGATTCAAGACGACA 58.572 45.455 0.00 0.00 39.78 4.35
515 516 4.023980 TCCTGTAGGATTCAAGACGACAT 58.976 43.478 0.00 0.00 39.78 3.06
516 517 4.466370 TCCTGTAGGATTCAAGACGACATT 59.534 41.667 0.00 0.00 39.78 2.71
517 518 4.806247 CCTGTAGGATTCAAGACGACATTC 59.194 45.833 0.00 0.00 37.39 2.67
518 519 4.755411 TGTAGGATTCAAGACGACATTCC 58.245 43.478 0.00 0.00 0.00 3.01
519 520 3.981071 AGGATTCAAGACGACATTCCA 57.019 42.857 0.00 0.00 0.00 3.53
520 521 3.600388 AGGATTCAAGACGACATTCCAC 58.400 45.455 0.00 0.00 0.00 4.02
521 522 3.261897 AGGATTCAAGACGACATTCCACT 59.738 43.478 0.00 0.00 0.00 4.00
522 523 3.619038 GGATTCAAGACGACATTCCACTC 59.381 47.826 0.00 0.00 0.00 3.51
523 524 4.499183 GATTCAAGACGACATTCCACTCT 58.501 43.478 0.00 0.00 0.00 3.24
524 525 5.394224 GGATTCAAGACGACATTCCACTCTA 60.394 44.000 0.00 0.00 0.00 2.43
525 526 5.462530 TTCAAGACGACATTCCACTCTAA 57.537 39.130 0.00 0.00 0.00 2.10
526 527 4.806330 TCAAGACGACATTCCACTCTAAC 58.194 43.478 0.00 0.00 0.00 2.34
527 528 4.523173 TCAAGACGACATTCCACTCTAACT 59.477 41.667 0.00 0.00 0.00 2.24
528 529 4.705337 AGACGACATTCCACTCTAACTC 57.295 45.455 0.00 0.00 0.00 3.01
529 530 3.444388 AGACGACATTCCACTCTAACTCC 59.556 47.826 0.00 0.00 0.00 3.85
530 531 2.496470 ACGACATTCCACTCTAACTCCC 59.504 50.000 0.00 0.00 0.00 4.30
531 532 2.761208 CGACATTCCACTCTAACTCCCT 59.239 50.000 0.00 0.00 0.00 4.20
532 533 3.429547 CGACATTCCACTCTAACTCCCTG 60.430 52.174 0.00 0.00 0.00 4.45
533 534 3.515901 GACATTCCACTCTAACTCCCTGT 59.484 47.826 0.00 0.00 0.00 4.00
534 535 3.910627 ACATTCCACTCTAACTCCCTGTT 59.089 43.478 0.00 0.00 42.31 3.16
535 536 4.351111 ACATTCCACTCTAACTCCCTGTTT 59.649 41.667 0.00 0.00 39.89 2.83
536 537 5.163088 ACATTCCACTCTAACTCCCTGTTTT 60.163 40.000 0.00 0.00 39.89 2.43
537 538 5.382664 TTCCACTCTAACTCCCTGTTTTT 57.617 39.130 0.00 0.00 39.89 1.94
555 556 3.562567 TTTTCTATTCCCGCGTTTTGG 57.437 42.857 4.92 0.00 0.00 3.28
556 557 2.476126 TTCTATTCCCGCGTTTTGGA 57.524 45.000 4.92 0.51 0.00 3.53
557 558 2.476126 TCTATTCCCGCGTTTTGGAA 57.524 45.000 15.43 15.43 44.34 3.53
558 559 2.780714 TCTATTCCCGCGTTTTGGAAA 58.219 42.857 16.73 7.35 43.50 3.13
559 560 3.349022 TCTATTCCCGCGTTTTGGAAAT 58.651 40.909 16.73 9.31 43.50 2.17
560 561 2.647529 ATTCCCGCGTTTTGGAAATC 57.352 45.000 16.73 0.00 43.50 2.17
561 562 0.599060 TTCCCGCGTTTTGGAAATCC 59.401 50.000 11.48 0.00 37.69 3.01
562 563 0.250989 TCCCGCGTTTTGGAAATCCT 60.251 50.000 4.92 0.00 36.82 3.24
563 564 1.003349 TCCCGCGTTTTGGAAATCCTA 59.997 47.619 4.92 0.00 36.82 2.94
564 565 1.131693 CCCGCGTTTTGGAAATCCTAC 59.868 52.381 4.92 0.00 36.82 3.18
565 566 1.201987 CCGCGTTTTGGAAATCCTACG 60.202 52.381 4.92 13.93 38.26 3.51
566 567 1.727880 CGCGTTTTGGAAATCCTACGA 59.272 47.619 19.17 0.00 37.82 3.43
567 568 2.158058 CGCGTTTTGGAAATCCTACGAA 59.842 45.455 19.17 0.00 37.82 3.85
568 569 3.181514 CGCGTTTTGGAAATCCTACGAAT 60.182 43.478 19.17 0.00 37.82 3.34
569 570 4.340263 GCGTTTTGGAAATCCTACGAATC 58.660 43.478 19.17 5.32 37.82 2.52
570 571 4.142773 GCGTTTTGGAAATCCTACGAATCA 60.143 41.667 19.17 0.00 37.82 2.57
571 572 5.618195 GCGTTTTGGAAATCCTACGAATCAA 60.618 40.000 19.17 0.00 37.82 2.57
572 573 6.375377 CGTTTTGGAAATCCTACGAATCAAA 58.625 36.000 13.35 0.00 37.82 2.69
573 574 6.523201 CGTTTTGGAAATCCTACGAATCAAAG 59.477 38.462 13.35 0.00 37.82 2.77
574 575 7.572353 CGTTTTGGAAATCCTACGAATCAAAGA 60.572 37.037 13.35 0.00 37.82 2.52
575 576 6.985188 TTGGAAATCCTACGAATCAAAGAG 57.015 37.500 0.44 0.00 36.82 2.85
576 577 5.428253 TGGAAATCCTACGAATCAAAGAGG 58.572 41.667 0.44 0.00 36.82 3.69
577 578 4.273724 GGAAATCCTACGAATCAAAGAGGC 59.726 45.833 0.00 0.00 0.00 4.70
578 579 2.981859 TCCTACGAATCAAAGAGGCC 57.018 50.000 0.00 0.00 0.00 5.19
592 593 4.724279 AAGAGGCCCTAAGTCTTGAAAA 57.276 40.909 0.00 0.00 0.00 2.29
596 597 2.225727 GGCCCTAAGTCTTGAAAACACG 59.774 50.000 0.00 0.00 0.00 4.49
629 630 4.019174 CACTCATGGGATAAGCCTTTGTT 58.981 43.478 0.00 0.00 36.66 2.83
630 631 5.192927 CACTCATGGGATAAGCCTTTGTTA 58.807 41.667 0.00 0.00 36.66 2.41
721 730 2.100584 ACCGTGCAATTTTTCTTCTGCA 59.899 40.909 0.00 0.00 42.28 4.41
763 772 2.810488 ATTCAGCCCAGGCAAAGGGG 62.810 60.000 12.03 5.64 46.86 4.79
837 846 1.202582 CCTCCAGATTCGACACGTCTT 59.797 52.381 0.00 0.00 0.00 3.01
838 847 2.352814 CCTCCAGATTCGACACGTCTTT 60.353 50.000 0.00 0.00 0.00 2.52
969 980 1.450669 GTCTCTCTCTCCTCCGCGT 60.451 63.158 4.92 0.00 0.00 6.01
985 996 2.659610 GTGCGCTCCCTCACTCTT 59.340 61.111 9.73 0.00 0.00 2.85
1188 1199 2.598907 CGTCAAGGTAACAAACAGTGCG 60.599 50.000 0.00 0.00 41.41 5.34
1193 1204 3.011119 AGGTAACAAACAGTGCGTGAAA 58.989 40.909 0.85 0.00 41.41 2.69
1248 1260 0.034337 TGTTCGGGTAGTGGTTGCTC 59.966 55.000 0.00 0.00 0.00 4.26
1295 1307 5.402630 ACATGTTGGGTTTAGGGATTTCTT 58.597 37.500 0.00 0.00 0.00 2.52
1310 1322 0.392998 TTCTTTCAGATGCGAGGCCC 60.393 55.000 0.00 0.00 0.00 5.80
1329 1341 1.459730 GGGGCCTACCTAGACCTGG 60.460 68.421 0.84 0.00 40.03 4.45
1346 1358 2.224018 CCTGGGTTGTTCCATTGTGTTG 60.224 50.000 0.00 0.00 36.05 3.33
1354 1366 7.430441 GGTTGTTCCATTGTGTTGTTATTACT 58.570 34.615 0.00 0.00 35.97 2.24
1389 1401 6.422776 TTCCGAAGCTTGATATCTTTGAAC 57.577 37.500 2.10 0.00 0.00 3.18
1450 1467 8.528044 ACTTCCTTTTGTACCAATCAACTTAA 57.472 30.769 0.00 0.00 0.00 1.85
1517 1534 8.691661 ATGGGTTCGCAAAGATATTATTTAGT 57.308 30.769 0.00 0.00 0.00 2.24
1605 1624 9.320352 GGTCATTTTCTTTTAGTTTGCCTTTAA 57.680 29.630 0.00 0.00 0.00 1.52
1629 1648 5.144100 TGGGTCACATATCTTTGGTTTGTT 58.856 37.500 0.00 0.00 0.00 2.83
1630 1649 5.600484 TGGGTCACATATCTTTGGTTTGTTT 59.400 36.000 0.00 0.00 0.00 2.83
1631 1650 5.925969 GGGTCACATATCTTTGGTTTGTTTG 59.074 40.000 0.00 0.00 0.00 2.93
1632 1651 6.462347 GGGTCACATATCTTTGGTTTGTTTGT 60.462 38.462 0.00 0.00 0.00 2.83
1633 1652 7.255660 GGGTCACATATCTTTGGTTTGTTTGTA 60.256 37.037 0.00 0.00 0.00 2.41
1634 1653 7.593644 GGTCACATATCTTTGGTTTGTTTGTAC 59.406 37.037 0.00 0.00 0.00 2.90
1635 1654 8.349983 GTCACATATCTTTGGTTTGTTTGTACT 58.650 33.333 0.00 0.00 0.00 2.73
1636 1655 9.562408 TCACATATCTTTGGTTTGTTTGTACTA 57.438 29.630 0.00 0.00 0.00 1.82
1642 1661 8.413899 TCTTTGGTTTGTTTGTACTAAATTGC 57.586 30.769 0.00 0.00 0.00 3.56
1643 1662 7.492994 TCTTTGGTTTGTTTGTACTAAATTGCC 59.507 33.333 0.00 0.00 0.00 4.52
1644 1663 6.472686 TGGTTTGTTTGTACTAAATTGCCT 57.527 33.333 0.00 0.00 0.00 4.75
1645 1664 6.276847 TGGTTTGTTTGTACTAAATTGCCTG 58.723 36.000 0.00 0.00 0.00 4.85
1646 1665 6.096987 TGGTTTGTTTGTACTAAATTGCCTGA 59.903 34.615 0.00 0.00 0.00 3.86
1647 1666 6.419710 GGTTTGTTTGTACTAAATTGCCTGAC 59.580 38.462 0.00 0.00 0.00 3.51
1648 1667 6.701145 TTGTTTGTACTAAATTGCCTGACA 57.299 33.333 0.00 0.00 0.00 3.58
1649 1668 6.312399 TGTTTGTACTAAATTGCCTGACAG 57.688 37.500 0.00 0.00 0.00 3.51
1650 1669 5.825679 TGTTTGTACTAAATTGCCTGACAGT 59.174 36.000 0.93 0.00 0.00 3.55
1651 1670 6.017440 TGTTTGTACTAAATTGCCTGACAGTC 60.017 38.462 0.93 0.00 0.00 3.51
1652 1671 4.242475 TGTACTAAATTGCCTGACAGTCG 58.758 43.478 0.93 0.00 0.00 4.18
1653 1672 3.678056 ACTAAATTGCCTGACAGTCGA 57.322 42.857 0.93 0.00 0.00 4.20
1654 1673 4.002906 ACTAAATTGCCTGACAGTCGAA 57.997 40.909 0.93 0.00 0.00 3.71
1655 1674 3.997021 ACTAAATTGCCTGACAGTCGAAG 59.003 43.478 0.93 0.00 0.00 3.79
1656 1675 1.813513 AATTGCCTGACAGTCGAAGG 58.186 50.000 0.93 2.97 0.00 3.46
1657 1676 0.687354 ATTGCCTGACAGTCGAAGGT 59.313 50.000 8.41 0.00 33.34 3.50
1675 1694 3.944087 AGGTCTAAATTGCCTGACAGTC 58.056 45.455 0.93 0.00 0.00 3.51
1820 1839 0.250234 TATCTGGTGGTGTGCAGAGC 59.750 55.000 6.03 6.03 0.00 4.09
1908 1927 5.684704 CTTCTGTTAATTATCTCCTGGCCA 58.315 41.667 4.71 4.71 0.00 5.36
1978 1997 1.084370 ACTAGGCGCGATTTGCTCAC 61.084 55.000 12.10 0.00 43.27 3.51
2119 2138 8.590204 TGGATATAACTTGTACACTCTGTTTGA 58.410 33.333 0.00 0.00 0.00 2.69
2155 2174 6.932901 ATTATTTTGTGTTGATGTCTTGCG 57.067 33.333 0.00 0.00 0.00 4.85
2178 2197 4.943705 GCAGACCCAATATTTTCTCTGTCA 59.056 41.667 11.82 0.00 0.00 3.58
2310 2329 8.836413 TGCTTGCTAATAATAGGATAACAACAC 58.164 33.333 0.00 0.00 28.80 3.32
2391 2410 4.447138 TTTGGTGATGTCTACCCTTTGT 57.553 40.909 0.00 0.00 37.40 2.83
3113 3595 2.169978 CAGATGCACATCTCTTCTCCCA 59.830 50.000 10.19 0.00 45.78 4.37
3152 3634 8.454106 AGATGCTTGTGTAACTTATGATTTGTC 58.546 33.333 0.00 0.00 38.04 3.18
3629 4111 7.225784 TGCCTTCAGTTTGCAATTTATTCTA 57.774 32.000 0.00 0.00 30.85 2.10
3785 4267 2.204151 ACCAGCCCTACAAGCCCT 60.204 61.111 0.00 0.00 0.00 5.19
3792 4274 2.264794 CTACAAGCCCTCGCCGTT 59.735 61.111 0.00 0.00 34.57 4.44
4220 4702 0.178947 ATTTTGGAAACTCGGCCCCA 60.179 50.000 0.00 0.00 0.00 4.96
4273 4755 4.640647 GGGAGGTGCTTCGAGAAATAAATT 59.359 41.667 0.00 0.00 0.00 1.82
4276 4758 6.761714 GGAGGTGCTTCGAGAAATAAATTAGA 59.238 38.462 0.00 0.00 0.00 2.10
4306 4788 8.638685 TCTTAAGCACCGATACTTATTTGTAC 57.361 34.615 0.00 0.00 0.00 2.90
4330 4812 5.934625 CAGGATAGACGCTTAATTAGGCATT 59.065 40.000 18.43 5.51 0.00 3.56
4339 4821 4.035675 GCTTAATTAGGCATTTCTCGCACT 59.964 41.667 14.21 0.00 0.00 4.40
4419 4903 1.799933 AGGCCTGAGGATCTCGATTT 58.200 50.000 3.11 0.00 34.92 2.17
4423 4907 4.061596 GGCCTGAGGATCTCGATTTTTAG 58.938 47.826 0.65 0.00 34.92 1.85
4467 4951 5.874895 GGTTAATTAGCAGAAAACCGAGT 57.125 39.130 1.55 0.00 31.09 4.18
4532 5016 2.282462 GCACCCACAGGACCCAAG 60.282 66.667 0.00 0.00 36.73 3.61
4662 5236 0.898326 TACTCCAGCAAGCGACTCCA 60.898 55.000 0.00 0.00 0.00 3.86
4667 5241 0.947244 CAGCAAGCGACTCCAACTTT 59.053 50.000 0.00 0.00 0.00 2.66
4670 5244 1.333619 GCAAGCGACTCCAACTTTGAA 59.666 47.619 0.00 0.00 0.00 2.69
4673 5247 1.202698 AGCGACTCCAACTTTGAAGCT 60.203 47.619 0.00 0.00 0.00 3.74
4700 5275 2.742710 CTTCCGACGAACGAGGCACA 62.743 60.000 0.00 0.00 45.77 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.901797 AAGCGCTTGAGGGAACGGG 62.902 63.158 24.40 0.00 0.00 5.28
20 21 2.358737 AAGCGCTTGAGGGAACGG 60.359 61.111 24.40 0.00 0.00 4.44
21 22 1.901650 GACAAGCGCTTGAGGGAACG 61.902 60.000 46.69 24.62 42.93 3.95
22 23 1.578206 GGACAAGCGCTTGAGGGAAC 61.578 60.000 46.69 29.21 42.93 3.62
23 24 1.302511 GGACAAGCGCTTGAGGGAA 60.303 57.895 46.69 0.00 42.93 3.97
24 25 2.347490 GGACAAGCGCTTGAGGGA 59.653 61.111 46.69 0.00 42.93 4.20
25 26 2.747855 GGGACAAGCGCTTGAGGG 60.748 66.667 46.69 27.07 42.93 4.30
26 27 2.747855 GGGGACAAGCGCTTGAGG 60.748 66.667 46.69 27.42 42.93 3.86
27 28 2.032528 TGGGGACAAGCGCTTGAG 59.967 61.111 46.69 28.13 42.93 3.02
28 29 2.281484 GTGGGGACAAGCGCTTGA 60.281 61.111 46.69 27.41 46.06 3.02
29 30 2.594303 TGTGGGGACAAGCGCTTG 60.594 61.111 40.80 40.80 46.06 4.01
30 31 2.281761 CTGTGGGGACAAGCGCTT 60.282 61.111 18.98 18.98 46.06 4.68
31 32 4.335647 CCTGTGGGGACAAGCGCT 62.336 66.667 2.64 2.64 46.06 5.92
33 34 4.641645 TGCCTGTGGGGACAAGCG 62.642 66.667 0.00 0.00 46.06 4.68
34 35 2.674380 CTGCCTGTGGGGACAAGC 60.674 66.667 0.00 0.00 46.06 4.01
35 36 2.034687 CCTGCCTGTGGGGACAAG 59.965 66.667 0.00 0.00 46.06 3.16
36 37 4.284550 GCCTGCCTGTGGGGACAA 62.285 66.667 0.00 0.00 46.06 3.18
45 46 4.827087 ATGAGCGTCGCCTGCCTG 62.827 66.667 14.86 0.00 0.00 4.85
46 47 4.521062 GATGAGCGTCGCCTGCCT 62.521 66.667 14.86 0.00 0.00 4.75
54 55 4.899239 CTGGCCGGGATGAGCGTC 62.899 72.222 2.57 0.00 0.00 5.19
58 59 4.864334 GGTGCTGGCCGGGATGAG 62.864 72.222 15.02 0.00 0.00 2.90
66 67 4.362476 CTTTTGCGGGTGCTGGCC 62.362 66.667 0.00 0.00 43.34 5.36
90 91 0.318445 CAACAACAAGAGCTGCTGGC 60.318 55.000 7.01 0.00 42.19 4.85
91 92 1.027357 ACAACAACAAGAGCTGCTGG 58.973 50.000 7.01 0.00 0.00 4.85
92 93 2.857592 AACAACAACAAGAGCTGCTG 57.142 45.000 7.01 0.00 0.00 4.41
93 94 3.874392 AAAACAACAACAAGAGCTGCT 57.126 38.095 0.00 0.00 0.00 4.24
111 112 5.122519 GGACATGGCCTTTCTTTTGAAAAA 58.877 37.500 11.56 0.00 46.42 1.94
112 113 4.702831 GGACATGGCCTTTCTTTTGAAAA 58.297 39.130 11.56 0.00 46.42 2.29
113 114 3.243704 CGGACATGGCCTTTCTTTTGAAA 60.244 43.478 17.64 0.00 45.20 2.69
114 115 2.295909 CGGACATGGCCTTTCTTTTGAA 59.704 45.455 17.64 0.00 36.52 2.69
115 116 1.885887 CGGACATGGCCTTTCTTTTGA 59.114 47.619 17.64 0.00 0.00 2.69
116 117 1.669795 GCGGACATGGCCTTTCTTTTG 60.670 52.381 17.64 0.00 0.00 2.44
117 118 0.603065 GCGGACATGGCCTTTCTTTT 59.397 50.000 17.64 0.00 0.00 2.27
118 119 0.251341 AGCGGACATGGCCTTTCTTT 60.251 50.000 17.64 0.00 0.00 2.52
119 120 0.678048 GAGCGGACATGGCCTTTCTT 60.678 55.000 17.64 0.00 0.00 2.52
120 121 1.078143 GAGCGGACATGGCCTTTCT 60.078 57.895 17.64 9.90 0.00 2.52
121 122 0.960364 TTGAGCGGACATGGCCTTTC 60.960 55.000 17.64 13.44 0.00 2.62
122 123 0.539438 TTTGAGCGGACATGGCCTTT 60.539 50.000 17.64 2.63 0.00 3.11
123 124 0.539438 TTTTGAGCGGACATGGCCTT 60.539 50.000 17.64 3.07 0.00 4.35
124 125 0.539438 TTTTTGAGCGGACATGGCCT 60.539 50.000 17.64 0.00 0.00 5.19
125 126 0.532115 ATTTTTGAGCGGACATGGCC 59.468 50.000 7.86 7.86 0.00 5.36
126 127 1.632422 CATTTTTGAGCGGACATGGC 58.368 50.000 0.00 0.00 0.00 4.40
127 128 1.135024 CCCATTTTTGAGCGGACATGG 60.135 52.381 0.00 0.00 0.00 3.66
128 129 1.545582 ACCCATTTTTGAGCGGACATG 59.454 47.619 0.00 0.00 0.00 3.21
129 130 1.923356 ACCCATTTTTGAGCGGACAT 58.077 45.000 0.00 0.00 0.00 3.06
130 131 1.339610 CAACCCATTTTTGAGCGGACA 59.660 47.619 0.00 0.00 0.00 4.02
131 132 1.934849 GCAACCCATTTTTGAGCGGAC 60.935 52.381 0.00 0.00 0.00 4.79
132 133 0.316841 GCAACCCATTTTTGAGCGGA 59.683 50.000 0.00 0.00 0.00 5.54
133 134 0.318120 AGCAACCCATTTTTGAGCGG 59.682 50.000 0.00 0.00 0.00 5.52
134 135 1.701704 GAGCAACCCATTTTTGAGCG 58.298 50.000 0.00 0.00 0.00 5.03
135 136 1.000274 ACGAGCAACCCATTTTTGAGC 60.000 47.619 0.00 0.00 0.00 4.26
136 137 2.034558 ACACGAGCAACCCATTTTTGAG 59.965 45.455 0.00 0.00 0.00 3.02
137 138 2.028130 ACACGAGCAACCCATTTTTGA 58.972 42.857 0.00 0.00 0.00 2.69
138 139 2.507339 ACACGAGCAACCCATTTTTG 57.493 45.000 0.00 0.00 0.00 2.44
139 140 2.482839 CCAACACGAGCAACCCATTTTT 60.483 45.455 0.00 0.00 0.00 1.94
140 141 1.068434 CCAACACGAGCAACCCATTTT 59.932 47.619 0.00 0.00 0.00 1.82
141 142 0.673437 CCAACACGAGCAACCCATTT 59.327 50.000 0.00 0.00 0.00 2.32
142 143 0.179004 TCCAACACGAGCAACCCATT 60.179 50.000 0.00 0.00 0.00 3.16
143 144 0.038166 ATCCAACACGAGCAACCCAT 59.962 50.000 0.00 0.00 0.00 4.00
144 145 0.179004 AATCCAACACGAGCAACCCA 60.179 50.000 0.00 0.00 0.00 4.51
145 146 0.521735 GAATCCAACACGAGCAACCC 59.478 55.000 0.00 0.00 0.00 4.11
146 147 1.069227 GTGAATCCAACACGAGCAACC 60.069 52.381 0.00 0.00 0.00 3.77
147 148 1.601903 TGTGAATCCAACACGAGCAAC 59.398 47.619 0.00 0.00 40.61 4.17
148 149 1.960417 TGTGAATCCAACACGAGCAA 58.040 45.000 0.00 0.00 40.61 3.91
149 150 1.960417 TTGTGAATCCAACACGAGCA 58.040 45.000 0.00 0.00 40.61 4.26
150 151 2.604614 GGTTTGTGAATCCAACACGAGC 60.605 50.000 0.00 0.00 40.61 5.03
151 152 2.616376 TGGTTTGTGAATCCAACACGAG 59.384 45.455 0.00 0.00 40.61 4.18
152 153 2.644676 TGGTTTGTGAATCCAACACGA 58.355 42.857 0.00 0.00 40.61 4.35
153 154 3.243367 ACATGGTTTGTGAATCCAACACG 60.243 43.478 0.00 0.00 40.61 4.49
154 155 4.298332 GACATGGTTTGTGAATCCAACAC 58.702 43.478 0.00 0.00 39.18 3.32
155 156 3.004210 CGACATGGTTTGTGAATCCAACA 59.996 43.478 0.00 0.00 39.18 3.33
156 157 3.564511 CGACATGGTTTGTGAATCCAAC 58.435 45.455 0.00 0.00 39.18 3.77
157 158 2.030363 GCGACATGGTTTGTGAATCCAA 60.030 45.455 0.00 0.00 39.18 3.53
158 159 1.539388 GCGACATGGTTTGTGAATCCA 59.461 47.619 0.00 0.00 39.18 3.41
159 160 1.812571 AGCGACATGGTTTGTGAATCC 59.187 47.619 0.00 0.00 39.18 3.01
160 161 2.226437 ACAGCGACATGGTTTGTGAATC 59.774 45.455 0.00 0.00 39.18 2.52
161 162 2.226437 GACAGCGACATGGTTTGTGAAT 59.774 45.455 0.00 0.00 39.18 2.57
162 163 1.601903 GACAGCGACATGGTTTGTGAA 59.398 47.619 0.00 0.00 39.18 3.18
163 164 1.225855 GACAGCGACATGGTTTGTGA 58.774 50.000 0.00 0.00 39.18 3.58
164 165 0.238289 GGACAGCGACATGGTTTGTG 59.762 55.000 0.00 0.00 39.18 3.33
165 166 0.179032 TGGACAGCGACATGGTTTGT 60.179 50.000 0.00 0.00 42.79 2.83
166 167 1.135603 CATGGACAGCGACATGGTTTG 60.136 52.381 0.00 0.00 40.50 2.93
167 168 1.167851 CATGGACAGCGACATGGTTT 58.832 50.000 0.00 0.00 40.50 3.27
168 169 0.036732 ACATGGACAGCGACATGGTT 59.963 50.000 14.31 0.00 46.60 3.67
169 170 0.391661 GACATGGACAGCGACATGGT 60.392 55.000 14.31 0.00 46.60 3.55
170 171 1.423721 CGACATGGACAGCGACATGG 61.424 60.000 14.31 0.00 46.60 3.66
172 173 0.737367 CACGACATGGACAGCGACAT 60.737 55.000 0.00 0.00 0.00 3.06
173 174 1.372872 CACGACATGGACAGCGACA 60.373 57.895 0.00 0.00 0.00 4.35
174 175 1.344942 GACACGACATGGACAGCGAC 61.345 60.000 0.00 0.00 0.00 5.19
175 176 1.080772 GACACGACATGGACAGCGA 60.081 57.895 0.00 0.00 0.00 4.93
176 177 2.094659 GGACACGACATGGACAGCG 61.095 63.158 0.00 0.00 0.00 5.18
177 178 2.094659 CGGACACGACATGGACAGC 61.095 63.158 0.00 0.00 44.60 4.40
178 179 2.094659 GCGGACACGACATGGACAG 61.095 63.158 0.00 0.00 44.60 3.51
179 180 2.048597 GCGGACACGACATGGACA 60.049 61.111 0.00 0.00 44.60 4.02
180 181 2.094659 CAGCGGACACGACATGGAC 61.095 63.158 0.00 0.00 44.60 4.02
181 182 2.261361 CAGCGGACACGACATGGA 59.739 61.111 0.00 0.00 44.60 3.41
182 183 2.048222 ACAGCGGACACGACATGG 60.048 61.111 0.00 0.00 44.60 3.66
183 184 2.094659 GGACAGCGGACACGACATG 61.095 63.158 0.00 0.00 44.60 3.21
184 185 2.261671 GGACAGCGGACACGACAT 59.738 61.111 0.00 0.00 44.60 3.06
185 186 4.337060 CGGACAGCGGACACGACA 62.337 66.667 0.00 0.00 44.60 4.35
186 187 3.836176 AACGGACAGCGGACACGAC 62.836 63.158 0.00 0.00 44.60 4.34
187 188 2.632136 AAAACGGACAGCGGACACGA 62.632 55.000 0.00 0.00 44.60 4.35
188 189 2.241880 AAAACGGACAGCGGACACG 61.242 57.895 0.00 0.00 44.63 4.49
189 190 1.278637 CAAAACGGACAGCGGACAC 59.721 57.895 0.00 0.00 0.00 3.67
190 191 2.539338 GCAAAACGGACAGCGGACA 61.539 57.895 0.00 0.00 0.00 4.02
191 192 2.251371 GCAAAACGGACAGCGGAC 59.749 61.111 0.00 0.00 0.00 4.79
192 193 2.975799 GGCAAAACGGACAGCGGA 60.976 61.111 0.00 0.00 0.00 5.54
193 194 4.383602 CGGCAAAACGGACAGCGG 62.384 66.667 0.00 0.00 0.00 5.52
194 195 2.563086 GATCGGCAAAACGGACAGCG 62.563 60.000 0.00 0.00 0.00 5.18
195 196 1.134694 GATCGGCAAAACGGACAGC 59.865 57.895 0.00 0.00 0.00 4.40
196 197 0.953471 TGGATCGGCAAAACGGACAG 60.953 55.000 0.00 0.00 0.00 3.51
197 198 0.535328 TTGGATCGGCAAAACGGACA 60.535 50.000 0.00 0.00 0.00 4.02
198 199 0.594110 TTTGGATCGGCAAAACGGAC 59.406 50.000 0.00 0.00 0.00 4.79
199 200 1.201181 CATTTGGATCGGCAAAACGGA 59.799 47.619 1.91 0.00 0.00 4.69
200 201 1.627879 CATTTGGATCGGCAAAACGG 58.372 50.000 1.91 0.00 0.00 4.44
201 202 1.201181 TCCATTTGGATCGGCAAAACG 59.799 47.619 0.00 0.00 39.78 3.60
234 235 5.897250 ACTGACCTAAATTGTGTCCCTTTTT 59.103 36.000 0.00 0.00 0.00 1.94
235 236 5.301805 CACTGACCTAAATTGTGTCCCTTTT 59.698 40.000 0.00 0.00 0.00 2.27
236 237 4.827284 CACTGACCTAAATTGTGTCCCTTT 59.173 41.667 0.00 0.00 0.00 3.11
237 238 4.398319 CACTGACCTAAATTGTGTCCCTT 58.602 43.478 0.00 0.00 0.00 3.95
238 239 3.810743 GCACTGACCTAAATTGTGTCCCT 60.811 47.826 0.00 0.00 0.00 4.20
239 240 2.488153 GCACTGACCTAAATTGTGTCCC 59.512 50.000 0.00 0.00 0.00 4.46
240 241 2.159627 CGCACTGACCTAAATTGTGTCC 59.840 50.000 0.00 0.00 0.00 4.02
241 242 2.806244 ACGCACTGACCTAAATTGTGTC 59.194 45.455 0.00 0.00 0.00 3.67
242 243 2.846193 ACGCACTGACCTAAATTGTGT 58.154 42.857 0.00 0.00 0.00 3.72
243 244 3.554524 CAACGCACTGACCTAAATTGTG 58.445 45.455 0.00 0.00 0.00 3.33
244 245 2.552315 CCAACGCACTGACCTAAATTGT 59.448 45.455 0.00 0.00 0.00 2.71
245 246 2.811431 TCCAACGCACTGACCTAAATTG 59.189 45.455 0.00 0.00 0.00 2.32
246 247 3.074412 CTCCAACGCACTGACCTAAATT 58.926 45.455 0.00 0.00 0.00 1.82
247 248 2.038557 ACTCCAACGCACTGACCTAAAT 59.961 45.455 0.00 0.00 0.00 1.40
248 249 1.414919 ACTCCAACGCACTGACCTAAA 59.585 47.619 0.00 0.00 0.00 1.85
249 250 1.045407 ACTCCAACGCACTGACCTAA 58.955 50.000 0.00 0.00 0.00 2.69
250 251 1.045407 AACTCCAACGCACTGACCTA 58.955 50.000 0.00 0.00 0.00 3.08
251 252 0.532862 CAACTCCAACGCACTGACCT 60.533 55.000 0.00 0.00 0.00 3.85
252 253 1.941812 CAACTCCAACGCACTGACC 59.058 57.895 0.00 0.00 0.00 4.02
253 254 1.279840 GCAACTCCAACGCACTGAC 59.720 57.895 0.00 0.00 0.00 3.51
254 255 1.891919 GGCAACTCCAACGCACTGA 60.892 57.895 0.00 0.00 34.01 3.41
255 256 2.639286 GGCAACTCCAACGCACTG 59.361 61.111 0.00 0.00 34.01 3.66
271 272 5.982890 TTTGAATCAAAGAAGCCCTTAGG 57.017 39.130 4.03 0.00 34.00 2.69
283 284 7.838079 TCCTTTGAGAATCCTTTGAATCAAA 57.162 32.000 8.25 8.25 33.82 2.69
284 285 7.838079 TTCCTTTGAGAATCCTTTGAATCAA 57.162 32.000 0.00 0.00 0.00 2.57
285 286 8.426569 AATTCCTTTGAGAATCCTTTGAATCA 57.573 30.769 0.00 0.00 35.40 2.57
286 287 9.716531 AAAATTCCTTTGAGAATCCTTTGAATC 57.283 29.630 0.00 0.00 35.40 2.52
289 290 9.586732 TCTAAAATTCCTTTGAGAATCCTTTGA 57.413 29.630 0.00 0.00 35.40 2.69
290 291 9.852091 CTCTAAAATTCCTTTGAGAATCCTTTG 57.148 33.333 0.00 0.00 35.40 2.77
291 292 9.029368 CCTCTAAAATTCCTTTGAGAATCCTTT 57.971 33.333 3.74 0.00 35.40 3.11
292 293 8.394040 TCCTCTAAAATTCCTTTGAGAATCCTT 58.606 33.333 3.74 0.00 35.40 3.36
293 294 7.933223 TCCTCTAAAATTCCTTTGAGAATCCT 58.067 34.615 3.74 0.00 35.40 3.24
294 295 8.759481 ATCCTCTAAAATTCCTTTGAGAATCC 57.241 34.615 3.74 0.00 35.40 3.01
296 297 9.987726 AGAATCCTCTAAAATTCCTTTGAGAAT 57.012 29.630 3.74 0.00 38.11 2.40
332 333 9.710900 ATCAAACAACCAAGATAGGAAAAATTC 57.289 29.630 0.00 0.00 0.00 2.17
334 335 9.710900 GAATCAAACAACCAAGATAGGAAAAAT 57.289 29.630 0.00 0.00 0.00 1.82
335 336 7.865385 CGAATCAAACAACCAAGATAGGAAAAA 59.135 33.333 0.00 0.00 0.00 1.94
336 337 7.013846 ACGAATCAAACAACCAAGATAGGAAAA 59.986 33.333 0.00 0.00 0.00 2.29
337 338 6.488683 ACGAATCAAACAACCAAGATAGGAAA 59.511 34.615 0.00 0.00 0.00 3.13
338 339 6.001460 ACGAATCAAACAACCAAGATAGGAA 58.999 36.000 0.00 0.00 0.00 3.36
339 340 5.556915 ACGAATCAAACAACCAAGATAGGA 58.443 37.500 0.00 0.00 0.00 2.94
340 341 5.880054 ACGAATCAAACAACCAAGATAGG 57.120 39.130 0.00 0.00 0.00 2.57
341 342 6.816640 TCCTACGAATCAAACAACCAAGATAG 59.183 38.462 0.00 0.00 0.00 2.08
342 343 6.703319 TCCTACGAATCAAACAACCAAGATA 58.297 36.000 0.00 0.00 0.00 1.98
343 344 5.556915 TCCTACGAATCAAACAACCAAGAT 58.443 37.500 0.00 0.00 0.00 2.40
344 345 4.963373 TCCTACGAATCAAACAACCAAGA 58.037 39.130 0.00 0.00 0.00 3.02
345 346 5.880054 ATCCTACGAATCAAACAACCAAG 57.120 39.130 0.00 0.00 0.00 3.61
346 347 5.533154 ACAATCCTACGAATCAAACAACCAA 59.467 36.000 0.00 0.00 0.00 3.67
347 348 5.067273 ACAATCCTACGAATCAAACAACCA 58.933 37.500 0.00 0.00 0.00 3.67
348 349 5.622770 ACAATCCTACGAATCAAACAACC 57.377 39.130 0.00 0.00 0.00 3.77
349 350 7.536281 GGTTTACAATCCTACGAATCAAACAAC 59.464 37.037 0.00 0.00 0.00 3.32
350 351 7.228906 TGGTTTACAATCCTACGAATCAAACAA 59.771 33.333 0.00 0.00 0.00 2.83
351 352 6.711194 TGGTTTACAATCCTACGAATCAAACA 59.289 34.615 0.00 0.00 0.00 2.83
352 353 7.136289 TGGTTTACAATCCTACGAATCAAAC 57.864 36.000 0.00 0.00 0.00 2.93
353 354 7.931578 ATGGTTTACAATCCTACGAATCAAA 57.068 32.000 0.00 0.00 0.00 2.69
354 355 7.713507 CCTATGGTTTACAATCCTACGAATCAA 59.286 37.037 0.00 0.00 0.00 2.57
355 356 7.070198 TCCTATGGTTTACAATCCTACGAATCA 59.930 37.037 0.00 0.00 0.00 2.57
356 357 7.439381 TCCTATGGTTTACAATCCTACGAATC 58.561 38.462 0.00 0.00 0.00 2.52
357 358 7.369551 TCCTATGGTTTACAATCCTACGAAT 57.630 36.000 0.00 0.00 0.00 3.34
358 359 6.795144 TCCTATGGTTTACAATCCTACGAA 57.205 37.500 0.00 0.00 0.00 3.85
359 360 6.795144 TTCCTATGGTTTACAATCCTACGA 57.205 37.500 0.00 0.00 0.00 3.43
360 361 8.446599 AAATTCCTATGGTTTACAATCCTACG 57.553 34.615 0.00 0.00 0.00 3.51
363 364 8.758829 GGAAAAATTCCTATGGTTTACAATCCT 58.241 33.333 1.86 0.00 46.57 3.24
364 365 8.942338 GGAAAAATTCCTATGGTTTACAATCC 57.058 34.615 1.86 0.00 46.57 3.01
380 381 8.606602 GTGCAAATGAATCCTATGGAAAAATTC 58.393 33.333 0.00 0.00 34.34 2.17
381 382 8.323567 AGTGCAAATGAATCCTATGGAAAAATT 58.676 29.630 0.00 0.00 34.34 1.82
382 383 7.854337 AGTGCAAATGAATCCTATGGAAAAAT 58.146 30.769 0.00 0.00 34.34 1.82
383 384 7.243604 AGTGCAAATGAATCCTATGGAAAAA 57.756 32.000 0.00 0.00 34.34 1.94
384 385 6.855763 AGTGCAAATGAATCCTATGGAAAA 57.144 33.333 0.00 0.00 34.34 2.29
385 386 7.345691 TCTAGTGCAAATGAATCCTATGGAAA 58.654 34.615 0.00 0.00 34.34 3.13
386 387 6.899089 TCTAGTGCAAATGAATCCTATGGAA 58.101 36.000 0.00 0.00 34.34 3.53
387 388 6.499106 TCTAGTGCAAATGAATCCTATGGA 57.501 37.500 0.00 0.00 35.55 3.41
388 389 7.756395 AATCTAGTGCAAATGAATCCTATGG 57.244 36.000 0.00 0.00 0.00 2.74
389 390 8.843262 TGAAATCTAGTGCAAATGAATCCTATG 58.157 33.333 0.00 0.00 0.00 2.23
390 391 8.985315 TGAAATCTAGTGCAAATGAATCCTAT 57.015 30.769 0.00 0.00 0.00 2.57
391 392 8.985315 ATGAAATCTAGTGCAAATGAATCCTA 57.015 30.769 0.00 0.00 0.00 2.94
392 393 7.893124 ATGAAATCTAGTGCAAATGAATCCT 57.107 32.000 0.00 0.00 0.00 3.24
393 394 8.295288 CCTATGAAATCTAGTGCAAATGAATCC 58.705 37.037 0.00 0.00 0.00 3.01
394 395 9.060347 TCCTATGAAATCTAGTGCAAATGAATC 57.940 33.333 0.00 0.00 0.00 2.52
395 396 8.985315 TCCTATGAAATCTAGTGCAAATGAAT 57.015 30.769 0.00 0.00 0.00 2.57
396 397 8.806429 TTCCTATGAAATCTAGTGCAAATGAA 57.194 30.769 0.00 0.00 0.00 2.57
397 398 8.677300 GTTTCCTATGAAATCTAGTGCAAATGA 58.323 33.333 0.00 0.00 42.20 2.57
398 399 8.461222 TGTTTCCTATGAAATCTAGTGCAAATG 58.539 33.333 0.00 0.00 42.20 2.32
399 400 8.579850 TGTTTCCTATGAAATCTAGTGCAAAT 57.420 30.769 0.00 0.00 42.20 2.32
400 401 7.994425 TGTTTCCTATGAAATCTAGTGCAAA 57.006 32.000 0.00 0.00 42.20 3.68
401 402 7.283127 GGATGTTTCCTATGAAATCTAGTGCAA 59.717 37.037 0.00 0.00 42.20 4.08
402 403 6.767902 GGATGTTTCCTATGAAATCTAGTGCA 59.232 38.462 0.00 0.00 42.20 4.57
403 404 6.205658 GGGATGTTTCCTATGAAATCTAGTGC 59.794 42.308 0.00 0.00 42.20 4.40
404 405 7.282585 TGGGATGTTTCCTATGAAATCTAGTG 58.717 38.462 0.00 0.00 42.20 2.74
405 406 7.451731 TGGGATGTTTCCTATGAAATCTAGT 57.548 36.000 0.00 0.00 42.20 2.57
406 407 7.609532 GGATGGGATGTTTCCTATGAAATCTAG 59.390 40.741 0.00 0.00 42.85 2.43
407 408 7.073598 TGGATGGGATGTTTCCTATGAAATCTA 59.926 37.037 0.00 0.00 42.85 1.98
408 409 6.126097 TGGATGGGATGTTTCCTATGAAATCT 60.126 38.462 0.00 0.00 42.85 2.40
409 410 6.015940 GTGGATGGGATGTTTCCTATGAAATC 60.016 42.308 0.00 0.00 42.85 2.17
410 411 5.835280 GTGGATGGGATGTTTCCTATGAAAT 59.165 40.000 0.00 0.00 42.85 2.17
411 412 5.044179 AGTGGATGGGATGTTTCCTATGAAA 60.044 40.000 0.00 0.00 42.85 2.69
412 413 4.478317 AGTGGATGGGATGTTTCCTATGAA 59.522 41.667 0.00 0.00 42.85 2.57
413 414 4.047166 AGTGGATGGGATGTTTCCTATGA 58.953 43.478 0.00 0.00 42.85 2.15
414 415 4.141413 TGAGTGGATGGGATGTTTCCTATG 60.141 45.833 0.00 0.00 42.85 2.23
415 416 4.047166 TGAGTGGATGGGATGTTTCCTAT 58.953 43.478 0.00 0.00 45.27 2.57
416 417 3.455910 CTGAGTGGATGGGATGTTTCCTA 59.544 47.826 0.00 0.00 42.20 2.94
417 418 2.240667 CTGAGTGGATGGGATGTTTCCT 59.759 50.000 0.00 0.00 42.20 3.36
418 419 2.239654 TCTGAGTGGATGGGATGTTTCC 59.760 50.000 0.00 0.00 41.77 3.13
419 420 3.274288 GTCTGAGTGGATGGGATGTTTC 58.726 50.000 0.00 0.00 0.00 2.78
420 421 2.025887 GGTCTGAGTGGATGGGATGTTT 60.026 50.000 0.00 0.00 0.00 2.83
421 422 1.561542 GGTCTGAGTGGATGGGATGTT 59.438 52.381 0.00 0.00 0.00 2.71
422 423 1.207791 GGTCTGAGTGGATGGGATGT 58.792 55.000 0.00 0.00 0.00 3.06
423 424 1.415659 GAGGTCTGAGTGGATGGGATG 59.584 57.143 0.00 0.00 0.00 3.51
424 425 1.293458 AGAGGTCTGAGTGGATGGGAT 59.707 52.381 0.00 0.00 0.00 3.85
425 426 0.712979 AGAGGTCTGAGTGGATGGGA 59.287 55.000 0.00 0.00 0.00 4.37
426 427 1.577736 AAGAGGTCTGAGTGGATGGG 58.422 55.000 0.00 0.00 0.00 4.00
427 428 2.568956 TCAAAGAGGTCTGAGTGGATGG 59.431 50.000 0.00 0.00 0.00 3.51
428 429 3.969287 TCAAAGAGGTCTGAGTGGATG 57.031 47.619 0.00 0.00 0.00 3.51
429 430 4.594920 TCTTTCAAAGAGGTCTGAGTGGAT 59.405 41.667 0.00 0.00 32.71 3.41
430 431 3.967326 TCTTTCAAAGAGGTCTGAGTGGA 59.033 43.478 0.00 0.00 32.71 4.02
431 432 4.342862 TCTTTCAAAGAGGTCTGAGTGG 57.657 45.455 0.00 0.00 32.71 4.00
432 433 5.411053 GGATTCTTTCAAAGAGGTCTGAGTG 59.589 44.000 0.00 0.00 39.03 3.51
433 434 5.309282 AGGATTCTTTCAAAGAGGTCTGAGT 59.691 40.000 0.00 0.00 39.03 3.41
434 435 5.642919 CAGGATTCTTTCAAAGAGGTCTGAG 59.357 44.000 15.13 4.64 39.03 3.35
435 436 5.555017 CAGGATTCTTTCAAAGAGGTCTGA 58.445 41.667 15.13 0.00 39.03 3.27
436 437 4.155644 GCAGGATTCTTTCAAAGAGGTCTG 59.844 45.833 15.58 15.58 39.03 3.51
437 438 4.331108 GCAGGATTCTTTCAAAGAGGTCT 58.669 43.478 0.00 0.00 39.03 3.85
438 439 3.126000 CGCAGGATTCTTTCAAAGAGGTC 59.874 47.826 0.00 3.35 39.03 3.85
439 440 3.077359 CGCAGGATTCTTTCAAAGAGGT 58.923 45.455 0.00 0.00 39.03 3.85
440 441 3.077359 ACGCAGGATTCTTTCAAAGAGG 58.923 45.455 0.00 0.00 39.03 3.69
441 442 4.756084 AACGCAGGATTCTTTCAAAGAG 57.244 40.909 0.00 0.00 39.03 2.85
442 443 5.514274 AAAACGCAGGATTCTTTCAAAGA 57.486 34.783 0.00 0.00 35.26 2.52
462 463 6.636447 CGAGTGTTTGATTGTGCATAGAAAAA 59.364 34.615 0.00 0.00 0.00 1.94
463 464 6.142139 CGAGTGTTTGATTGTGCATAGAAAA 58.858 36.000 0.00 0.00 0.00 2.29
464 465 5.238432 ACGAGTGTTTGATTGTGCATAGAAA 59.762 36.000 0.00 0.00 0.00 2.52
465 466 4.754618 ACGAGTGTTTGATTGTGCATAGAA 59.245 37.500 0.00 0.00 0.00 2.10
466 467 4.314961 ACGAGTGTTTGATTGTGCATAGA 58.685 39.130 0.00 0.00 0.00 1.98
467 468 4.668576 ACGAGTGTTTGATTGTGCATAG 57.331 40.909 0.00 0.00 0.00 2.23
468 469 4.991687 TGTACGAGTGTTTGATTGTGCATA 59.008 37.500 0.00 0.00 0.00 3.14
469 470 3.812609 TGTACGAGTGTTTGATTGTGCAT 59.187 39.130 0.00 0.00 0.00 3.96
470 471 3.198872 TGTACGAGTGTTTGATTGTGCA 58.801 40.909 0.00 0.00 0.00 4.57
471 472 3.870723 TGTACGAGTGTTTGATTGTGC 57.129 42.857 0.00 0.00 0.00 4.57
472 473 5.179368 AGGATTGTACGAGTGTTTGATTGTG 59.821 40.000 0.00 0.00 0.00 3.33
473 474 5.179368 CAGGATTGTACGAGTGTTTGATTGT 59.821 40.000 0.00 0.00 0.00 2.71
474 475 5.179368 ACAGGATTGTACGAGTGTTTGATTG 59.821 40.000 0.00 0.00 35.25 2.67
475 476 5.305585 ACAGGATTGTACGAGTGTTTGATT 58.694 37.500 0.00 0.00 35.25 2.57
476 477 4.894784 ACAGGATTGTACGAGTGTTTGAT 58.105 39.130 0.00 0.00 35.25 2.57
477 478 4.330944 ACAGGATTGTACGAGTGTTTGA 57.669 40.909 0.00 0.00 35.25 2.69
478 479 4.625742 CCTACAGGATTGTACGAGTGTTTG 59.374 45.833 0.00 0.00 38.76 2.93
479 480 4.525487 TCCTACAGGATTGTACGAGTGTTT 59.475 41.667 0.00 0.00 39.78 2.83
480 481 4.084287 TCCTACAGGATTGTACGAGTGTT 58.916 43.478 0.00 0.00 39.78 3.32
481 482 3.693807 TCCTACAGGATTGTACGAGTGT 58.306 45.455 0.00 0.00 39.78 3.55
494 495 3.868757 TGTCGTCTTGAATCCTACAGG 57.131 47.619 0.00 0.00 0.00 4.00
495 496 4.806247 GGAATGTCGTCTTGAATCCTACAG 59.194 45.833 0.00 0.00 0.00 2.74
496 497 4.221924 TGGAATGTCGTCTTGAATCCTACA 59.778 41.667 0.00 0.00 30.94 2.74
497 498 4.567159 GTGGAATGTCGTCTTGAATCCTAC 59.433 45.833 0.00 0.00 30.94 3.18
498 499 4.466370 AGTGGAATGTCGTCTTGAATCCTA 59.534 41.667 0.00 0.00 30.94 2.94
499 500 3.261897 AGTGGAATGTCGTCTTGAATCCT 59.738 43.478 0.00 0.00 30.94 3.24
500 501 3.600388 AGTGGAATGTCGTCTTGAATCC 58.400 45.455 0.00 0.00 0.00 3.01
501 502 4.499183 AGAGTGGAATGTCGTCTTGAATC 58.501 43.478 0.00 0.00 0.00 2.52
502 503 4.543590 AGAGTGGAATGTCGTCTTGAAT 57.456 40.909 0.00 0.00 0.00 2.57
503 504 5.010719 AGTTAGAGTGGAATGTCGTCTTGAA 59.989 40.000 0.00 0.00 0.00 2.69
504 505 4.523173 AGTTAGAGTGGAATGTCGTCTTGA 59.477 41.667 0.00 0.00 0.00 3.02
505 506 4.810790 AGTTAGAGTGGAATGTCGTCTTG 58.189 43.478 0.00 0.00 0.00 3.02
506 507 4.082136 GGAGTTAGAGTGGAATGTCGTCTT 60.082 45.833 0.00 0.00 0.00 3.01
507 508 3.444388 GGAGTTAGAGTGGAATGTCGTCT 59.556 47.826 0.00 0.00 0.00 4.18
508 509 3.429135 GGGAGTTAGAGTGGAATGTCGTC 60.429 52.174 0.00 0.00 0.00 4.20
509 510 2.496470 GGGAGTTAGAGTGGAATGTCGT 59.504 50.000 0.00 0.00 0.00 4.34
510 511 2.761208 AGGGAGTTAGAGTGGAATGTCG 59.239 50.000 0.00 0.00 0.00 4.35
511 512 3.515901 ACAGGGAGTTAGAGTGGAATGTC 59.484 47.826 0.00 0.00 0.00 3.06
512 513 3.521727 ACAGGGAGTTAGAGTGGAATGT 58.478 45.455 0.00 0.00 0.00 2.71
513 514 4.559862 AACAGGGAGTTAGAGTGGAATG 57.440 45.455 0.00 0.00 39.09 2.67
514 515 5.584551 AAAACAGGGAGTTAGAGTGGAAT 57.415 39.130 0.00 0.00 40.26 3.01
515 516 5.382664 AAAAACAGGGAGTTAGAGTGGAA 57.617 39.130 0.00 0.00 40.26 3.53
534 535 3.568853 TCCAAAACGCGGGAATAGAAAAA 59.431 39.130 12.47 0.00 0.00 1.94
535 536 3.147629 TCCAAAACGCGGGAATAGAAAA 58.852 40.909 12.47 0.00 0.00 2.29
536 537 2.780714 TCCAAAACGCGGGAATAGAAA 58.219 42.857 12.47 0.00 0.00 2.52
537 538 2.476126 TCCAAAACGCGGGAATAGAA 57.524 45.000 12.47 0.00 0.00 2.10
538 539 2.476126 TTCCAAAACGCGGGAATAGA 57.524 45.000 12.47 0.00 38.23 1.98
539 540 3.488553 GGATTTCCAAAACGCGGGAATAG 60.489 47.826 12.47 0.00 42.44 1.73
540 541 2.424246 GGATTTCCAAAACGCGGGAATA 59.576 45.455 12.47 5.29 42.44 1.75
541 542 1.203758 GGATTTCCAAAACGCGGGAAT 59.796 47.619 12.47 0.00 42.44 3.01
542 543 0.599060 GGATTTCCAAAACGCGGGAA 59.401 50.000 12.47 11.04 41.27 3.97
543 544 0.250989 AGGATTTCCAAAACGCGGGA 60.251 50.000 12.47 3.98 38.89 5.14
544 545 1.131693 GTAGGATTTCCAAAACGCGGG 59.868 52.381 12.47 0.89 38.89 6.13
545 546 1.201987 CGTAGGATTTCCAAAACGCGG 60.202 52.381 12.47 0.00 38.89 6.46
546 547 1.727880 TCGTAGGATTTCCAAAACGCG 59.272 47.619 3.53 3.53 38.18 6.01
547 548 3.817148 TTCGTAGGATTTCCAAAACGC 57.183 42.857 11.86 0.00 38.18 4.84
548 549 5.539582 TGATTCGTAGGATTTCCAAAACG 57.460 39.130 10.92 10.92 39.01 3.60
549 550 7.590279 TCTTTGATTCGTAGGATTTCCAAAAC 58.410 34.615 0.00 0.00 38.89 2.43
550 551 7.094377 CCTCTTTGATTCGTAGGATTTCCAAAA 60.094 37.037 0.00 0.00 38.89 2.44
551 552 6.374333 CCTCTTTGATTCGTAGGATTTCCAAA 59.626 38.462 0.00 0.00 38.89 3.28
552 553 5.880332 CCTCTTTGATTCGTAGGATTTCCAA 59.120 40.000 0.00 0.00 38.89 3.53
553 554 5.428253 CCTCTTTGATTCGTAGGATTTCCA 58.572 41.667 0.00 0.00 38.89 3.53
554 555 4.273724 GCCTCTTTGATTCGTAGGATTTCC 59.726 45.833 0.00 0.00 0.00 3.13
555 556 4.273724 GGCCTCTTTGATTCGTAGGATTTC 59.726 45.833 0.00 0.00 0.00 2.17
556 557 4.200092 GGCCTCTTTGATTCGTAGGATTT 58.800 43.478 0.00 0.00 0.00 2.17
557 558 3.433740 GGGCCTCTTTGATTCGTAGGATT 60.434 47.826 0.84 0.00 0.00 3.01
558 559 2.104963 GGGCCTCTTTGATTCGTAGGAT 59.895 50.000 0.84 0.00 0.00 3.24
559 560 1.485066 GGGCCTCTTTGATTCGTAGGA 59.515 52.381 0.84 0.00 0.00 2.94
560 561 1.486726 AGGGCCTCTTTGATTCGTAGG 59.513 52.381 0.00 0.00 0.00 3.18
561 562 2.990066 AGGGCCTCTTTGATTCGTAG 57.010 50.000 0.00 0.00 0.00 3.51
562 563 3.773119 ACTTAGGGCCTCTTTGATTCGTA 59.227 43.478 10.74 0.00 0.00 3.43
563 564 2.572104 ACTTAGGGCCTCTTTGATTCGT 59.428 45.455 10.74 0.00 0.00 3.85
564 565 3.118592 AGACTTAGGGCCTCTTTGATTCG 60.119 47.826 10.74 0.00 0.00 3.34
565 566 4.495690 AGACTTAGGGCCTCTTTGATTC 57.504 45.455 10.74 0.00 0.00 2.52
566 567 4.289672 TCAAGACTTAGGGCCTCTTTGATT 59.710 41.667 10.74 0.00 0.00 2.57
567 568 3.846588 TCAAGACTTAGGGCCTCTTTGAT 59.153 43.478 10.74 0.00 0.00 2.57
568 569 3.248024 TCAAGACTTAGGGCCTCTTTGA 58.752 45.455 10.74 11.34 0.00 2.69
569 570 3.703001 TCAAGACTTAGGGCCTCTTTG 57.297 47.619 10.74 9.08 0.00 2.77
570 571 4.724279 TTTCAAGACTTAGGGCCTCTTT 57.276 40.909 10.74 0.00 0.00 2.52
571 572 4.141251 TGTTTTCAAGACTTAGGGCCTCTT 60.141 41.667 10.74 4.27 0.00 2.85
572 573 3.394606 TGTTTTCAAGACTTAGGGCCTCT 59.605 43.478 10.74 0.00 0.00 3.69
573 574 3.502595 GTGTTTTCAAGACTTAGGGCCTC 59.497 47.826 10.74 0.00 0.00 4.70
574 575 3.487372 GTGTTTTCAAGACTTAGGGCCT 58.513 45.455 12.58 12.58 0.00 5.19
575 576 2.225727 CGTGTTTTCAAGACTTAGGGCC 59.774 50.000 0.00 0.00 0.00 5.80
576 577 2.225727 CCGTGTTTTCAAGACTTAGGGC 59.774 50.000 0.00 0.00 0.00 5.19
577 578 2.812011 CCCGTGTTTTCAAGACTTAGGG 59.188 50.000 0.00 0.00 0.00 3.53
578 579 3.735591 TCCCGTGTTTTCAAGACTTAGG 58.264 45.455 0.00 0.00 0.00 2.69
701 709 2.741612 TGCAGAAGAAAAATTGCACGG 58.258 42.857 0.00 0.00 41.23 4.94
721 730 4.142790 GCCTGAACTGAATCATGATGGAT 58.857 43.478 9.46 0.00 0.00 3.41
763 772 4.518249 CACTAAGGGATTCTTCCACTTCC 58.482 47.826 0.00 0.00 44.60 3.46
764 773 4.225267 TCCACTAAGGGATTCTTCCACTTC 59.775 45.833 0.00 0.00 44.60 3.01
837 846 2.375509 GGAGGAGGTGGGAAAGAGAAAA 59.624 50.000 0.00 0.00 0.00 2.29
838 847 1.985895 GGAGGAGGTGGGAAAGAGAAA 59.014 52.381 0.00 0.00 0.00 2.52
969 980 1.599606 GAGAAGAGTGAGGGAGCGCA 61.600 60.000 11.47 0.00 0.00 6.09
985 996 2.598565 CTCCATTAGACGGATGGGAGA 58.401 52.381 0.00 0.00 43.44 3.71
1188 1199 2.337583 TCTGCATCACGTAGCTTTCAC 58.662 47.619 0.00 0.00 0.00 3.18
1193 1204 1.133982 CTCACTCTGCATCACGTAGCT 59.866 52.381 8.07 0.00 0.00 3.32
1248 1260 2.124983 CTGCCACACCCATCTCCG 60.125 66.667 0.00 0.00 0.00 4.63
1295 1307 4.161295 CCGGGCCTCGCATCTGAA 62.161 66.667 0.84 0.00 37.59 3.02
1346 1358 9.807649 TTCGGAAAATAGTCACCTAGTAATAAC 57.192 33.333 0.00 0.00 0.00 1.89
1354 1366 5.046878 TCAAGCTTCGGAAAATAGTCACCTA 60.047 40.000 0.00 0.00 0.00 3.08
1364 1376 7.174946 AGTTCAAAGATATCAAGCTTCGGAAAA 59.825 33.333 5.32 0.00 30.80 2.29
1365 1377 6.655003 AGTTCAAAGATATCAAGCTTCGGAAA 59.345 34.615 5.32 0.00 30.80 3.13
1368 1380 5.276584 CGAGTTCAAAGATATCAAGCTTCGG 60.277 44.000 5.32 0.00 29.07 4.30
1389 1401 0.865769 CACAAAACTTCCCGACCGAG 59.134 55.000 0.00 0.00 0.00 4.63
1475 1492 6.149973 CGAACCCATATGCATAGACATGATTT 59.850 38.462 12.79 3.34 33.67 2.17
1605 1624 5.332743 ACAAACCAAAGATATGTGACCCAT 58.667 37.500 0.00 0.00 37.58 4.00
1629 1648 4.688879 CGACTGTCAGGCAATTTAGTACAA 59.311 41.667 6.49 0.00 0.00 2.41
1630 1649 4.021807 TCGACTGTCAGGCAATTTAGTACA 60.022 41.667 6.49 0.00 0.00 2.90
1631 1650 4.491676 TCGACTGTCAGGCAATTTAGTAC 58.508 43.478 6.49 0.00 0.00 2.73
1632 1651 4.794278 TCGACTGTCAGGCAATTTAGTA 57.206 40.909 6.49 0.00 0.00 1.82
1633 1652 3.678056 TCGACTGTCAGGCAATTTAGT 57.322 42.857 6.49 0.00 0.00 2.24
1634 1653 3.372206 CCTTCGACTGTCAGGCAATTTAG 59.628 47.826 6.49 0.00 0.00 1.85
1635 1654 3.244422 ACCTTCGACTGTCAGGCAATTTA 60.244 43.478 6.49 0.00 0.00 1.40
1636 1655 2.154462 CCTTCGACTGTCAGGCAATTT 58.846 47.619 6.49 0.00 0.00 1.82
1637 1656 1.072331 ACCTTCGACTGTCAGGCAATT 59.928 47.619 6.49 0.00 0.00 2.32
1638 1657 0.687354 ACCTTCGACTGTCAGGCAAT 59.313 50.000 6.49 0.00 0.00 3.56
1639 1658 0.033504 GACCTTCGACTGTCAGGCAA 59.966 55.000 6.49 0.00 0.00 4.52
1640 1659 0.827925 AGACCTTCGACTGTCAGGCA 60.828 55.000 6.49 0.00 33.89 4.75
1641 1660 1.174783 TAGACCTTCGACTGTCAGGC 58.825 55.000 12.68 0.00 33.89 4.85
1642 1661 3.936372 TTTAGACCTTCGACTGTCAGG 57.064 47.619 14.11 11.50 33.89 3.86
1643 1662 4.092091 GCAATTTAGACCTTCGACTGTCAG 59.908 45.833 14.11 0.00 33.89 3.51
1644 1663 3.994392 GCAATTTAGACCTTCGACTGTCA 59.006 43.478 14.11 0.00 33.89 3.58
1645 1664 3.371285 GGCAATTTAGACCTTCGACTGTC 59.629 47.826 5.56 5.56 0.00 3.51
1646 1665 3.008049 AGGCAATTTAGACCTTCGACTGT 59.992 43.478 0.00 0.00 0.00 3.55
1647 1666 3.372206 CAGGCAATTTAGACCTTCGACTG 59.628 47.826 0.00 0.00 0.00 3.51
1648 1667 3.260884 TCAGGCAATTTAGACCTTCGACT 59.739 43.478 0.00 0.00 0.00 4.18
1649 1668 3.371285 GTCAGGCAATTTAGACCTTCGAC 59.629 47.826 0.00 0.00 0.00 4.20
1650 1669 3.007506 TGTCAGGCAATTTAGACCTTCGA 59.992 43.478 0.00 0.00 0.00 3.71
1651 1670 3.334691 TGTCAGGCAATTTAGACCTTCG 58.665 45.455 0.00 0.00 0.00 3.79
1652 1671 4.327680 ACTGTCAGGCAATTTAGACCTTC 58.672 43.478 4.53 0.00 0.00 3.46
1653 1672 4.327680 GACTGTCAGGCAATTTAGACCTT 58.672 43.478 0.00 0.00 0.00 3.50
1654 1673 3.617531 CGACTGTCAGGCAATTTAGACCT 60.618 47.826 6.49 0.00 0.00 3.85
1655 1674 2.673368 CGACTGTCAGGCAATTTAGACC 59.327 50.000 6.49 0.00 0.00 3.85
1656 1675 3.585862 TCGACTGTCAGGCAATTTAGAC 58.414 45.455 6.49 0.00 0.00 2.59
1657 1676 3.953712 TCGACTGTCAGGCAATTTAGA 57.046 42.857 6.49 0.00 0.00 2.10
1675 1694 4.829064 TTTTGACTTGGATCAACCTTCG 57.171 40.909 0.00 0.00 38.31 3.79
1978 1997 2.558378 CCAGACATGACAGTGCATAGG 58.442 52.381 0.00 0.00 0.00 2.57
2119 2138 6.319715 ACACAAAATAATTACCCAAGGAGGT 58.680 36.000 0.00 0.00 44.37 3.85
2155 2174 4.943705 TGACAGAGAAAATATTGGGTCTGC 59.056 41.667 15.93 11.48 35.81 4.26
2178 2197 1.004745 CTGGTGTGGATTGCTAAGGGT 59.995 52.381 0.00 0.00 0.00 4.34
2277 2296 6.658849 TCCTATTATTAGCAAGCAAGGAACA 58.341 36.000 0.00 0.00 0.00 3.18
2310 2329 5.069251 CAGGTACCTGTAATGAAGGACTAGG 59.931 48.000 30.57 1.74 39.10 3.02
2724 3204 4.320023 ACCAAAAACCAACCTCAACAAAC 58.680 39.130 0.00 0.00 0.00 2.93
3113 3595 5.163405 ACACAAGCATCTATGAGTAACGGAT 60.163 40.000 0.00 0.00 0.00 4.18
3629 4111 3.008813 AGTCTCTGGATGTTGAACTGCAT 59.991 43.478 0.00 0.00 0.00 3.96
3792 4274 9.104965 CATATCCTTGGTTATTTTTGTCGACTA 57.895 33.333 17.92 6.32 0.00 2.59
4220 4702 4.147321 CCTTGCATTGTATAAGGCCTCAT 58.853 43.478 5.23 0.00 42.60 2.90
4295 4777 6.466885 AGCGTCTATCCTGTACAAATAAGT 57.533 37.500 0.00 0.00 0.00 2.24
4306 4788 4.883083 TGCCTAATTAAGCGTCTATCCTG 58.117 43.478 1.75 0.00 0.00 3.86
4339 4821 2.303175 AGCGGTTTTTCTAAAGCACCA 58.697 42.857 0.00 0.00 40.83 4.17
4369 4851 3.055021 GCTAGGTTCTTAGGAGGTGCTTT 60.055 47.826 0.00 0.00 0.00 3.51
4419 4903 7.119262 CGGGCAACTCTATTCTTCTTTTCTAAA 59.881 37.037 0.00 0.00 0.00 1.85
4423 4907 4.095036 CCGGGCAACTCTATTCTTCTTTTC 59.905 45.833 0.00 0.00 0.00 2.29
4464 4948 4.026407 GCGTGTTGTAACAGTTTTCACTC 58.974 43.478 0.00 0.00 40.05 3.51
4467 4951 3.011119 AGGCGTGTTGTAACAGTTTTCA 58.989 40.909 0.00 0.00 40.05 2.69
4532 5016 0.388649 AGACAATCTCGACGGTGTGC 60.389 55.000 0.00 0.00 0.00 4.57
4662 5236 1.172812 GGGTCGGCAGCTTCAAAGTT 61.173 55.000 0.00 0.00 0.00 2.66
4667 5241 2.347490 GAAGGGTCGGCAGCTTCA 59.653 61.111 0.00 0.00 0.00 3.02
4700 5275 1.073199 CTTTGGTCGGCAGGGTTCT 59.927 57.895 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.