Multiple sequence alignment - TraesCS7D01G252500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G252500 chr7D 100.000 5428 0 0 1 5428 227572854 227567427 0.000000e+00 10024.0
1 TraesCS7D01G252500 chr7D 87.615 436 52 1 1 436 601144174 601143741 6.270000e-139 505.0
2 TraesCS7D01G252500 chr7A 91.952 3715 175 57 1771 5428 239761084 239757437 0.000000e+00 5090.0
3 TraesCS7D01G252500 chr7A 91.083 471 34 5 1 464 239771193 239770724 9.920000e-177 630.0
4 TraesCS7D01G252500 chr7A 81.077 650 40 33 777 1377 239762336 239761721 4.990000e-120 442.0
5 TraesCS7D01G252500 chr7A 85.586 222 9 5 525 726 239762667 239762449 1.530000e-50 211.0
6 TraesCS7D01G252500 chr7A 86.842 190 6 6 1540 1710 239761388 239761199 1.540000e-45 195.0
7 TraesCS7D01G252500 chr7A 95.522 67 3 0 462 528 239764922 239764856 2.070000e-19 108.0
8 TraesCS7D01G252500 chr7A 92.453 53 3 1 2853 2904 156131079 156131027 2.100000e-09 75.0
9 TraesCS7D01G252500 chr7A 100.000 32 0 0 1519 1550 239761627 239761596 5.870000e-05 60.2
10 TraesCS7D01G252500 chr7B 93.078 3496 156 45 1359 4817 199287983 199284537 0.000000e+00 5036.0
11 TraesCS7D01G252500 chr7B 87.712 1001 41 31 436 1362 199289048 199288056 0.000000e+00 1092.0
12 TraesCS7D01G252500 chr7B 90.485 557 37 8 4874 5428 199284321 199283779 0.000000e+00 721.0
13 TraesCS7D01G252500 chr2D 93.166 439 30 0 1 439 166203128 166202690 0.000000e+00 645.0
14 TraesCS7D01G252500 chr6A 92.890 436 29 2 1 435 416647636 416648070 2.760000e-177 632.0
15 TraesCS7D01G252500 chr1D 92.170 447 33 2 1 445 487694585 487695031 9.920000e-177 630.0
16 TraesCS7D01G252500 chr1D 88.710 62 7 0 2840 2901 323866293 323866232 5.830000e-10 76.8
17 TraesCS7D01G252500 chr3B 94.472 398 21 1 1 397 421231645 421232042 3.590000e-171 612.0
18 TraesCS7D01G252500 chr3B 90.566 53 5 0 2853 2905 762788792 762788844 2.710000e-08 71.3
19 TraesCS7D01G252500 chr4B 91.441 444 32 5 1 438 629941994 629941551 6.010000e-169 604.0
20 TraesCS7D01G252500 chr4B 90.323 62 4 2 2849 2908 227109457 227109396 4.510000e-11 80.5
21 TraesCS7D01G252500 chr5B 91.076 437 39 0 1 437 505713549 505713985 4.680000e-165 592.0
22 TraesCS7D01G252500 chr3D 91.413 361 31 0 76 436 549611 549971 3.780000e-136 496.0
23 TraesCS7D01G252500 chr3D 92.982 57 4 0 2840 2896 441192845 441192901 3.480000e-12 84.2
24 TraesCS7D01G252500 chr5D 92.537 67 5 0 2838 2904 60900670 60900604 4.480000e-16 97.1
25 TraesCS7D01G252500 chr1A 90.385 52 5 0 2848 2899 508628993 508629044 9.760000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G252500 chr7D 227567427 227572854 5427 True 10024.0 10024 100.000000 1 5428 1 chr7D.!!$R1 5427
1 TraesCS7D01G252500 chr7A 239757437 239764922 7485 True 1017.7 5090 90.163167 462 5428 6 chr7A.!!$R3 4966
2 TraesCS7D01G252500 chr7B 199283779 199289048 5269 True 2283.0 5036 90.425000 436 5428 3 chr7B.!!$R1 4992

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
39 40 0.036010 CTCATCTTCCAGTGCCGGTT 60.036 55.000 1.90 0.0 0.0 4.44 F
40 41 0.036388 TCATCTTCCAGTGCCGGTTC 60.036 55.000 1.90 0.0 0.0 3.62 F
121 122 0.036010 ATTGGAGACTTGTGCCCTCG 60.036 55.000 0.00 0.0 0.0 4.63 F
370 371 0.108089 TTGTAATCGCCCGCTTAGCA 60.108 50.000 4.70 0.0 0.0 3.49 F
374 375 0.170339 AATCGCCCGCTTAGCAAAAC 59.830 50.000 4.70 0.0 0.0 2.43 F
1386 3823 0.243907 ATCAATACCGGGCGATCGAG 59.756 55.000 21.57 9.0 0.0 4.04 F
1477 3921 1.076533 CGCGATGTAACAGACGGCTT 61.077 55.000 0.00 0.0 0.0 4.35 F
1571 4238 1.079336 CCCCGTTCCGTCTCCTTTC 60.079 63.158 0.00 0.0 0.0 2.62 F
1979 4723 1.133025 GAACATCACAATTGGAGCCCG 59.867 52.381 10.83 0.0 0.0 6.13 F
2466 5232 1.609783 GTGGGGTTCAGCTAGGCAT 59.390 57.895 0.00 0.0 0.0 4.40 F
2987 5765 2.370281 TGAAATGACTGACGAGCCTC 57.630 50.000 0.00 0.0 0.0 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1455 3895 0.179171 CCGTCTGTTACATCGCGACT 60.179 55.000 12.93 1.21 0.00 4.18 R
1756 4460 0.251209 GTGGTTTCCCTCCCCTTCAC 60.251 60.000 0.00 0.00 0.00 3.18 R
1761 4465 2.033602 CGTGTGGTTTCCCTCCCC 59.966 66.667 0.00 0.00 0.00 4.81 R
2220 4968 1.050988 AGAGTGAGCAGTGGTGGTGT 61.051 55.000 0.00 0.00 33.41 4.16 R
2267 5015 1.434622 CGGAGTCTCACATGCATGGC 61.435 60.000 29.41 13.92 0.00 4.40 R
2987 5765 0.102481 GCAGGCAGCTGGAAATGATG 59.898 55.000 17.12 0.00 41.15 3.07 R
3166 5944 1.962306 GTTGTAGGGCGCGAAACCA 60.962 57.895 12.10 0.00 0.00 3.67 R
3343 6125 8.296713 ACACACCTGAAAATGTTAATGTCATAC 58.703 33.333 0.00 0.00 0.00 2.39 R
3875 6659 2.304180 CCCACTCTCAACATCCTTGAGT 59.696 50.000 9.36 0.00 44.58 3.41 R
4084 6871 0.886563 AGCCATGCTGAACTGAAAGC 59.113 50.000 0.00 0.00 37.57 3.51 R
4603 7390 0.253044 GTCACAGGATTGCTGGCCTA 59.747 55.000 10.12 0.00 32.03 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.388499 TTCAAGAGACGGCGGCCC 62.388 66.667 10.28 0.00 0.00 5.80
27 28 4.115199 GGCGGCCCACCTCATCTT 62.115 66.667 8.12 0.00 0.00 2.40
28 29 2.514824 GCGGCCCACCTCATCTTC 60.515 66.667 0.00 0.00 0.00 2.87
29 30 2.190578 CGGCCCACCTCATCTTCC 59.809 66.667 0.00 0.00 0.00 3.46
30 31 2.669133 CGGCCCACCTCATCTTCCA 61.669 63.158 0.00 0.00 0.00 3.53
31 32 1.225704 GGCCCACCTCATCTTCCAG 59.774 63.158 0.00 0.00 0.00 3.86
32 33 1.566298 GGCCCACCTCATCTTCCAGT 61.566 60.000 0.00 0.00 0.00 4.00
33 34 0.393537 GCCCACCTCATCTTCCAGTG 60.394 60.000 0.00 0.00 0.00 3.66
34 35 0.393537 CCCACCTCATCTTCCAGTGC 60.394 60.000 0.00 0.00 0.00 4.40
35 36 0.393537 CCACCTCATCTTCCAGTGCC 60.394 60.000 0.00 0.00 0.00 5.01
36 37 0.742281 CACCTCATCTTCCAGTGCCG 60.742 60.000 0.00 0.00 0.00 5.69
37 38 1.153289 CCTCATCTTCCAGTGCCGG 60.153 63.158 0.00 0.00 0.00 6.13
38 39 1.599047 CTCATCTTCCAGTGCCGGT 59.401 57.895 1.90 0.00 0.00 5.28
39 40 0.036010 CTCATCTTCCAGTGCCGGTT 60.036 55.000 1.90 0.00 0.00 4.44
40 41 0.036388 TCATCTTCCAGTGCCGGTTC 60.036 55.000 1.90 0.00 0.00 3.62
41 42 0.321564 CATCTTCCAGTGCCGGTTCA 60.322 55.000 1.90 0.00 0.00 3.18
42 43 0.620556 ATCTTCCAGTGCCGGTTCAT 59.379 50.000 1.90 0.00 0.00 2.57
43 44 0.400213 TCTTCCAGTGCCGGTTCATT 59.600 50.000 1.90 0.00 0.00 2.57
44 45 0.523072 CTTCCAGTGCCGGTTCATTG 59.477 55.000 1.90 0.00 0.00 2.82
45 46 0.179004 TTCCAGTGCCGGTTCATTGT 60.179 50.000 1.90 0.00 0.00 2.71
46 47 0.888736 TCCAGTGCCGGTTCATTGTG 60.889 55.000 1.90 0.00 0.00 3.33
47 48 0.888736 CCAGTGCCGGTTCATTGTGA 60.889 55.000 1.90 0.00 0.00 3.58
48 49 0.518636 CAGTGCCGGTTCATTGTGAG 59.481 55.000 1.90 0.00 0.00 3.51
49 50 0.396435 AGTGCCGGTTCATTGTGAGA 59.604 50.000 1.90 0.00 0.00 3.27
50 51 0.798776 GTGCCGGTTCATTGTGAGAG 59.201 55.000 1.90 0.00 0.00 3.20
51 52 0.396435 TGCCGGTTCATTGTGAGAGT 59.604 50.000 1.90 0.00 0.00 3.24
52 53 0.798776 GCCGGTTCATTGTGAGAGTG 59.201 55.000 1.90 0.00 0.00 3.51
53 54 1.878102 GCCGGTTCATTGTGAGAGTGT 60.878 52.381 1.90 0.00 0.00 3.55
54 55 1.800586 CCGGTTCATTGTGAGAGTGTG 59.199 52.381 0.00 0.00 0.00 3.82
55 56 1.800586 CGGTTCATTGTGAGAGTGTGG 59.199 52.381 0.00 0.00 0.00 4.17
56 57 2.547855 CGGTTCATTGTGAGAGTGTGGA 60.548 50.000 0.00 0.00 0.00 4.02
57 58 2.808543 GGTTCATTGTGAGAGTGTGGAC 59.191 50.000 0.00 0.00 0.00 4.02
58 59 2.438868 TCATTGTGAGAGTGTGGACG 57.561 50.000 0.00 0.00 0.00 4.79
59 60 1.000843 TCATTGTGAGAGTGTGGACGG 59.999 52.381 0.00 0.00 0.00 4.79
60 61 1.000843 CATTGTGAGAGTGTGGACGGA 59.999 52.381 0.00 0.00 0.00 4.69
61 62 0.673985 TTGTGAGAGTGTGGACGGAG 59.326 55.000 0.00 0.00 0.00 4.63
62 63 0.179001 TGTGAGAGTGTGGACGGAGA 60.179 55.000 0.00 0.00 0.00 3.71
63 64 1.178276 GTGAGAGTGTGGACGGAGAT 58.822 55.000 0.00 0.00 0.00 2.75
64 65 1.546476 GTGAGAGTGTGGACGGAGATT 59.454 52.381 0.00 0.00 0.00 2.40
65 66 2.753452 GTGAGAGTGTGGACGGAGATTA 59.247 50.000 0.00 0.00 0.00 1.75
66 67 3.192844 GTGAGAGTGTGGACGGAGATTAA 59.807 47.826 0.00 0.00 0.00 1.40
67 68 3.830178 TGAGAGTGTGGACGGAGATTAAA 59.170 43.478 0.00 0.00 0.00 1.52
68 69 4.282449 TGAGAGTGTGGACGGAGATTAAAA 59.718 41.667 0.00 0.00 0.00 1.52
69 70 4.566987 AGAGTGTGGACGGAGATTAAAAC 58.433 43.478 0.00 0.00 0.00 2.43
70 71 4.283722 AGAGTGTGGACGGAGATTAAAACT 59.716 41.667 0.00 0.00 0.00 2.66
71 72 4.969484 AGTGTGGACGGAGATTAAAACTT 58.031 39.130 0.00 0.00 0.00 2.66
72 73 4.995487 AGTGTGGACGGAGATTAAAACTTC 59.005 41.667 0.00 0.00 0.00 3.01
73 74 3.991773 TGTGGACGGAGATTAAAACTTCG 59.008 43.478 10.73 10.73 41.49 3.79
74 75 2.997986 TGGACGGAGATTAAAACTTCGC 59.002 45.455 11.81 6.61 39.64 4.70
75 76 3.259902 GGACGGAGATTAAAACTTCGCT 58.740 45.455 11.81 2.68 39.64 4.93
76 77 3.683340 GGACGGAGATTAAAACTTCGCTT 59.317 43.478 11.81 0.00 39.64 4.68
77 78 4.435651 GGACGGAGATTAAAACTTCGCTTG 60.436 45.833 11.81 0.00 39.64 4.01
78 79 3.435671 ACGGAGATTAAAACTTCGCTTGG 59.564 43.478 11.81 0.00 39.64 3.61
79 80 3.435671 CGGAGATTAAAACTTCGCTTGGT 59.564 43.478 1.78 0.00 29.67 3.67
80 81 4.083484 CGGAGATTAAAACTTCGCTTGGTT 60.083 41.667 1.78 0.00 29.67 3.67
81 82 5.562113 CGGAGATTAAAACTTCGCTTGGTTT 60.562 40.000 1.78 0.00 37.26 3.27
82 83 6.213677 GGAGATTAAAACTTCGCTTGGTTTT 58.786 36.000 12.53 12.53 44.43 2.43
83 84 6.362551 GGAGATTAAAACTTCGCTTGGTTTTC 59.637 38.462 11.67 2.46 42.33 2.29
84 85 6.801575 AGATTAAAACTTCGCTTGGTTTTCA 58.198 32.000 11.67 4.83 42.33 2.69
85 86 6.695713 AGATTAAAACTTCGCTTGGTTTTCAC 59.304 34.615 11.67 7.06 42.33 3.18
86 87 2.468532 AACTTCGCTTGGTTTTCACG 57.531 45.000 0.00 0.00 0.00 4.35
87 88 1.658994 ACTTCGCTTGGTTTTCACGA 58.341 45.000 0.00 0.00 0.00 4.35
88 89 1.329599 ACTTCGCTTGGTTTTCACGAC 59.670 47.619 0.00 0.00 31.61 4.34
89 90 1.329292 CTTCGCTTGGTTTTCACGACA 59.671 47.619 0.00 0.00 31.61 4.35
90 91 1.588674 TCGCTTGGTTTTCACGACAT 58.411 45.000 0.00 0.00 0.00 3.06
91 92 1.529438 TCGCTTGGTTTTCACGACATC 59.471 47.619 0.00 0.00 0.00 3.06
92 93 1.721489 CGCTTGGTTTTCACGACATCG 60.721 52.381 0.00 0.00 46.33 3.84
93 94 1.529438 GCTTGGTTTTCACGACATCGA 59.471 47.619 8.54 0.00 43.02 3.59
94 95 2.661979 GCTTGGTTTTCACGACATCGAC 60.662 50.000 8.54 0.00 43.02 4.20
95 96 1.504359 TGGTTTTCACGACATCGACC 58.496 50.000 8.54 5.27 43.02 4.79
96 97 0.794473 GGTTTTCACGACATCGACCC 59.206 55.000 8.54 0.00 43.02 4.46
97 98 0.437295 GTTTTCACGACATCGACCCG 59.563 55.000 8.54 0.00 43.02 5.28
98 99 0.314618 TTTTCACGACATCGACCCGA 59.685 50.000 8.54 0.00 43.02 5.14
99 100 0.387622 TTTCACGACATCGACCCGAC 60.388 55.000 8.54 0.00 43.02 4.79
100 101 1.517210 TTCACGACATCGACCCGACA 61.517 55.000 8.54 0.00 43.02 4.35
101 102 1.514228 CACGACATCGACCCGACAG 60.514 63.158 8.54 0.00 43.02 3.51
102 103 1.673337 ACGACATCGACCCGACAGA 60.673 57.895 8.54 0.00 43.02 3.41
103 104 1.030488 ACGACATCGACCCGACAGAT 61.030 55.000 8.54 0.00 43.02 2.90
104 105 0.100682 CGACATCGACCCGACAGATT 59.899 55.000 0.00 0.00 43.02 2.40
105 106 1.560923 GACATCGACCCGACAGATTG 58.439 55.000 0.00 0.00 39.18 2.67
106 107 0.175760 ACATCGACCCGACAGATTGG 59.824 55.000 0.00 0.00 39.18 3.16
107 108 0.459899 CATCGACCCGACAGATTGGA 59.540 55.000 0.00 0.00 39.18 3.53
108 109 0.747255 ATCGACCCGACAGATTGGAG 59.253 55.000 0.00 0.00 39.18 3.86
109 110 0.323087 TCGACCCGACAGATTGGAGA 60.323 55.000 0.00 0.00 0.00 3.71
110 111 0.179134 CGACCCGACAGATTGGAGAC 60.179 60.000 0.00 0.00 0.00 3.36
111 112 1.187087 GACCCGACAGATTGGAGACT 58.813 55.000 0.00 0.00 0.00 3.24
112 113 1.550976 GACCCGACAGATTGGAGACTT 59.449 52.381 0.00 0.00 0.00 3.01
113 114 1.276421 ACCCGACAGATTGGAGACTTG 59.724 52.381 0.00 0.00 0.00 3.16
114 115 1.276421 CCCGACAGATTGGAGACTTGT 59.724 52.381 0.00 0.00 0.00 3.16
115 116 2.341257 CCGACAGATTGGAGACTTGTG 58.659 52.381 0.00 0.00 0.00 3.33
116 117 1.728971 CGACAGATTGGAGACTTGTGC 59.271 52.381 0.00 0.00 0.00 4.57
117 118 2.079925 GACAGATTGGAGACTTGTGCC 58.920 52.381 0.00 0.00 0.00 5.01
118 119 1.271597 ACAGATTGGAGACTTGTGCCC 60.272 52.381 0.00 0.00 0.00 5.36
119 120 1.004044 CAGATTGGAGACTTGTGCCCT 59.996 52.381 0.00 0.00 0.00 5.19
120 121 1.280421 AGATTGGAGACTTGTGCCCTC 59.720 52.381 0.00 0.00 0.00 4.30
121 122 0.036010 ATTGGAGACTTGTGCCCTCG 60.036 55.000 0.00 0.00 0.00 4.63
122 123 1.118965 TTGGAGACTTGTGCCCTCGA 61.119 55.000 0.00 0.00 0.00 4.04
123 124 0.904865 TGGAGACTTGTGCCCTCGAT 60.905 55.000 0.00 0.00 0.00 3.59
124 125 0.460987 GGAGACTTGTGCCCTCGATG 60.461 60.000 0.00 0.00 0.00 3.84
125 126 0.532573 GAGACTTGTGCCCTCGATGA 59.467 55.000 0.00 0.00 0.00 2.92
126 127 0.534412 AGACTTGTGCCCTCGATGAG 59.466 55.000 0.00 0.00 0.00 2.90
135 136 3.159298 CCTCGATGAGGGTTTGGTG 57.841 57.895 4.89 0.00 45.43 4.17
136 137 0.392998 CCTCGATGAGGGTTTGGTGG 60.393 60.000 4.89 0.00 45.43 4.61
137 138 0.392998 CTCGATGAGGGTTTGGTGGG 60.393 60.000 0.00 0.00 0.00 4.61
138 139 0.838554 TCGATGAGGGTTTGGTGGGA 60.839 55.000 0.00 0.00 0.00 4.37
139 140 0.676782 CGATGAGGGTTTGGTGGGAC 60.677 60.000 0.00 0.00 0.00 4.46
140 141 0.676782 GATGAGGGTTTGGTGGGACG 60.677 60.000 0.00 0.00 0.00 4.79
141 142 1.131303 ATGAGGGTTTGGTGGGACGA 61.131 55.000 0.00 0.00 0.00 4.20
142 143 1.003718 GAGGGTTTGGTGGGACGAG 60.004 63.158 0.00 0.00 0.00 4.18
143 144 2.033602 GGGTTTGGTGGGACGAGG 59.966 66.667 0.00 0.00 0.00 4.63
144 145 2.826003 GGGTTTGGTGGGACGAGGT 61.826 63.158 0.00 0.00 0.00 3.85
145 146 1.149854 GGTTTGGTGGGACGAGGTT 59.850 57.895 0.00 0.00 0.00 3.50
146 147 0.466739 GGTTTGGTGGGACGAGGTTT 60.467 55.000 0.00 0.00 0.00 3.27
147 148 0.666374 GTTTGGTGGGACGAGGTTTG 59.334 55.000 0.00 0.00 0.00 2.93
148 149 0.256464 TTTGGTGGGACGAGGTTTGT 59.744 50.000 0.00 0.00 0.00 2.83
149 150 0.179040 TTGGTGGGACGAGGTTTGTC 60.179 55.000 0.00 0.00 35.60 3.18
150 151 1.338890 TGGTGGGACGAGGTTTGTCA 61.339 55.000 0.00 0.00 38.10 3.58
151 152 0.883370 GGTGGGACGAGGTTTGTCAC 60.883 60.000 0.00 0.00 40.23 3.67
152 153 0.179067 GTGGGACGAGGTTTGTCACA 60.179 55.000 0.00 0.00 46.95 3.58
153 154 0.542333 TGGGACGAGGTTTGTCACAA 59.458 50.000 0.00 0.00 46.19 3.33
154 155 1.226746 GGGACGAGGTTTGTCACAAG 58.773 55.000 0.00 0.00 39.58 3.16
155 156 1.202604 GGGACGAGGTTTGTCACAAGA 60.203 52.381 0.00 0.00 39.58 3.02
156 157 2.135933 GGACGAGGTTTGTCACAAGAG 58.864 52.381 0.00 0.00 38.10 2.85
157 158 2.135933 GACGAGGTTTGTCACAAGAGG 58.864 52.381 0.00 0.00 36.37 3.69
158 159 1.202651 ACGAGGTTTGTCACAAGAGGG 60.203 52.381 0.00 0.00 0.00 4.30
159 160 1.878102 CGAGGTTTGTCACAAGAGGGG 60.878 57.143 0.00 0.00 0.00 4.79
160 161 1.143073 GAGGTTTGTCACAAGAGGGGT 59.857 52.381 0.00 0.00 0.00 4.95
161 162 1.133792 AGGTTTGTCACAAGAGGGGTG 60.134 52.381 0.00 0.00 37.60 4.61
162 163 1.133915 GGTTTGTCACAAGAGGGGTGA 60.134 52.381 0.00 0.00 42.62 4.02
166 167 2.351777 TCACAAGAGGGGTGACTCG 58.648 57.895 0.00 0.00 40.16 4.18
167 168 1.374758 CACAAGAGGGGTGACTCGC 60.375 63.158 0.00 0.00 42.31 5.03
168 169 2.125912 CAAGAGGGGTGACTCGCG 60.126 66.667 0.00 0.00 42.31 5.87
169 170 4.070552 AAGAGGGGTGACTCGCGC 62.071 66.667 0.00 0.00 42.31 6.86
171 172 4.373116 GAGGGGTGACTCGCGCAA 62.373 66.667 8.75 0.00 34.16 4.85
172 173 4.379243 AGGGGTGACTCGCGCAAG 62.379 66.667 8.75 0.00 34.16 4.01
176 177 3.482783 GTGACTCGCGCAAGGCTC 61.483 66.667 1.30 0.00 40.44 4.70
179 180 3.678717 GACTCGCGCAAGGCTCGTA 62.679 63.158 8.75 0.00 37.99 3.43
180 181 2.506217 CTCGCGCAAGGCTCGTAA 60.506 61.111 8.75 0.00 37.99 3.18
181 182 2.789203 CTCGCGCAAGGCTCGTAAC 61.789 63.158 8.75 0.00 37.99 2.50
182 183 3.109547 CGCGCAAGGCTCGTAACA 61.110 61.111 8.75 0.00 40.44 2.41
183 184 2.474712 GCGCAAGGCTCGTAACAC 59.525 61.111 0.30 0.00 39.11 3.32
184 185 3.023591 GCGCAAGGCTCGTAACACC 62.024 63.158 0.30 0.00 39.11 4.16
185 186 1.374252 CGCAAGGCTCGTAACACCT 60.374 57.895 0.00 0.00 34.45 4.00
186 187 0.949105 CGCAAGGCTCGTAACACCTT 60.949 55.000 0.00 0.00 44.66 3.50
190 191 2.386661 AGGCTCGTAACACCTTGATG 57.613 50.000 0.00 0.00 0.00 3.07
191 192 1.899814 AGGCTCGTAACACCTTGATGA 59.100 47.619 0.00 0.00 0.00 2.92
192 193 2.501723 AGGCTCGTAACACCTTGATGAT 59.498 45.455 0.00 0.00 0.00 2.45
193 194 2.609459 GGCTCGTAACACCTTGATGATG 59.391 50.000 0.00 0.00 0.00 3.07
194 195 2.030946 GCTCGTAACACCTTGATGATGC 59.969 50.000 0.00 0.00 0.00 3.91
195 196 3.525537 CTCGTAACACCTTGATGATGCT 58.474 45.455 0.00 0.00 0.00 3.79
196 197 3.935203 CTCGTAACACCTTGATGATGCTT 59.065 43.478 0.00 0.00 0.00 3.91
197 198 3.684305 TCGTAACACCTTGATGATGCTTG 59.316 43.478 0.00 0.00 0.00 4.01
198 199 3.436704 CGTAACACCTTGATGATGCTTGT 59.563 43.478 0.00 0.00 0.00 3.16
199 200 4.083324 CGTAACACCTTGATGATGCTTGTT 60.083 41.667 0.00 0.00 0.00 2.83
200 201 3.928727 ACACCTTGATGATGCTTGTTG 57.071 42.857 0.00 0.00 0.00 3.33
201 202 2.029649 ACACCTTGATGATGCTTGTTGC 60.030 45.455 0.00 0.00 43.25 4.17
202 203 1.200716 ACCTTGATGATGCTTGTTGCG 59.799 47.619 0.00 0.00 46.63 4.85
203 204 1.200716 CCTTGATGATGCTTGTTGCGT 59.799 47.619 0.00 0.00 46.63 5.24
204 205 2.247637 CTTGATGATGCTTGTTGCGTG 58.752 47.619 0.00 0.00 46.63 5.34
205 206 0.522626 TGATGATGCTTGTTGCGTGG 59.477 50.000 0.00 0.00 46.63 4.94
206 207 0.179156 GATGATGCTTGTTGCGTGGG 60.179 55.000 0.00 0.00 46.63 4.61
207 208 0.608856 ATGATGCTTGTTGCGTGGGA 60.609 50.000 0.00 0.00 46.63 4.37
208 209 0.821301 TGATGCTTGTTGCGTGGGAA 60.821 50.000 0.00 0.00 46.63 3.97
209 210 0.313672 GATGCTTGTTGCGTGGGAAA 59.686 50.000 0.00 0.00 46.63 3.13
210 211 0.968405 ATGCTTGTTGCGTGGGAAAT 59.032 45.000 0.00 0.00 46.63 2.17
211 212 0.313672 TGCTTGTTGCGTGGGAAATC 59.686 50.000 0.00 0.00 46.63 2.17
212 213 0.598065 GCTTGTTGCGTGGGAAATCT 59.402 50.000 0.00 0.00 0.00 2.40
213 214 1.666888 GCTTGTTGCGTGGGAAATCTG 60.667 52.381 0.00 0.00 0.00 2.90
214 215 1.879380 CTTGTTGCGTGGGAAATCTGA 59.121 47.619 0.00 0.00 0.00 3.27
215 216 1.974265 TGTTGCGTGGGAAATCTGAA 58.026 45.000 0.00 0.00 0.00 3.02
216 217 2.302260 TGTTGCGTGGGAAATCTGAAA 58.698 42.857 0.00 0.00 0.00 2.69
217 218 2.034053 TGTTGCGTGGGAAATCTGAAAC 59.966 45.455 0.00 0.00 0.00 2.78
218 219 1.974265 TGCGTGGGAAATCTGAAACA 58.026 45.000 0.00 0.00 0.00 2.83
219 220 2.302260 TGCGTGGGAAATCTGAAACAA 58.698 42.857 0.00 0.00 0.00 2.83
220 221 2.293122 TGCGTGGGAAATCTGAAACAAG 59.707 45.455 0.00 0.00 0.00 3.16
221 222 2.922335 GCGTGGGAAATCTGAAACAAGC 60.922 50.000 0.00 0.00 0.00 4.01
222 223 2.665519 CGTGGGAAATCTGAAACAAGCG 60.666 50.000 0.00 0.00 0.00 4.68
223 224 1.269448 TGGGAAATCTGAAACAAGCGC 59.731 47.619 0.00 0.00 0.00 5.92
224 225 1.269448 GGGAAATCTGAAACAAGCGCA 59.731 47.619 11.47 0.00 0.00 6.09
225 226 2.288152 GGGAAATCTGAAACAAGCGCAA 60.288 45.455 11.47 0.00 0.00 4.85
226 227 3.578688 GGAAATCTGAAACAAGCGCAAT 58.421 40.909 11.47 0.00 0.00 3.56
227 228 3.365820 GGAAATCTGAAACAAGCGCAATG 59.634 43.478 11.47 11.29 0.00 2.82
228 229 1.986698 ATCTGAAACAAGCGCAATGC 58.013 45.000 11.47 0.00 46.98 3.56
240 241 1.937391 GCAATGCGAGGATCTTCCG 59.063 57.895 0.00 0.00 42.75 4.30
245 246 4.910956 CGAGGATCTTCCGCAACA 57.089 55.556 0.00 0.00 42.75 3.33
246 247 2.373938 CGAGGATCTTCCGCAACAC 58.626 57.895 0.00 0.00 42.75 3.32
247 248 1.084370 CGAGGATCTTCCGCAACACC 61.084 60.000 0.00 0.00 42.75 4.16
248 249 1.079127 AGGATCTTCCGCAACACCG 60.079 57.895 0.00 0.00 42.75 4.94
249 250 2.750888 GGATCTTCCGCAACACCGC 61.751 63.158 0.00 0.00 0.00 5.68
250 251 2.746277 ATCTTCCGCAACACCGCC 60.746 61.111 0.00 0.00 0.00 6.13
260 261 4.764771 ACACCGCCGCCCCTACTA 62.765 66.667 0.00 0.00 0.00 1.82
261 262 4.217159 CACCGCCGCCCCTACTAC 62.217 72.222 0.00 0.00 0.00 2.73
265 266 2.519302 GCCGCCCCTACTACCGTA 60.519 66.667 0.00 0.00 0.00 4.02
266 267 2.559202 GCCGCCCCTACTACCGTAG 61.559 68.421 3.88 3.88 42.24 3.51
267 268 1.152881 CCGCCCCTACTACCGTAGT 60.153 63.158 15.44 15.44 41.24 2.73
268 269 1.169034 CCGCCCCTACTACCGTAGTC 61.169 65.000 14.59 0.00 41.24 2.59
269 270 0.464373 CGCCCCTACTACCGTAGTCA 60.464 60.000 14.59 1.88 41.24 3.41
270 271 1.816961 CGCCCCTACTACCGTAGTCAT 60.817 57.143 14.59 0.00 41.24 3.06
271 272 1.885233 GCCCCTACTACCGTAGTCATC 59.115 57.143 14.59 0.00 41.24 2.92
272 273 2.149578 CCCCTACTACCGTAGTCATCG 58.850 57.143 14.59 3.03 41.24 3.84
273 274 1.534595 CCCTACTACCGTAGTCATCGC 59.465 57.143 14.59 0.00 41.24 4.58
274 275 1.534595 CCTACTACCGTAGTCATCGCC 59.465 57.143 14.59 0.00 41.24 5.54
275 276 2.216046 CTACTACCGTAGTCATCGCCA 58.784 52.381 14.59 0.00 40.14 5.69
276 277 1.466856 ACTACCGTAGTCATCGCCAA 58.533 50.000 5.31 0.00 32.47 4.52
277 278 1.404391 ACTACCGTAGTCATCGCCAAG 59.596 52.381 5.31 0.00 32.47 3.61
278 279 1.674441 CTACCGTAGTCATCGCCAAGA 59.326 52.381 0.00 0.00 0.00 3.02
279 280 1.112113 ACCGTAGTCATCGCCAAGAT 58.888 50.000 0.00 0.00 41.01 2.40
280 281 1.480954 ACCGTAGTCATCGCCAAGATT 59.519 47.619 0.00 0.00 37.52 2.40
281 282 2.691526 ACCGTAGTCATCGCCAAGATTA 59.308 45.455 0.00 0.00 37.52 1.75
282 283 3.131577 ACCGTAGTCATCGCCAAGATTAA 59.868 43.478 0.00 0.00 37.52 1.40
283 284 3.736252 CCGTAGTCATCGCCAAGATTAAG 59.264 47.826 0.00 0.00 37.52 1.85
284 285 3.736252 CGTAGTCATCGCCAAGATTAAGG 59.264 47.826 0.00 0.00 37.52 2.69
285 286 4.499188 CGTAGTCATCGCCAAGATTAAGGA 60.499 45.833 0.00 0.00 37.52 3.36
286 287 4.696479 AGTCATCGCCAAGATTAAGGAT 57.304 40.909 0.00 0.00 37.52 3.24
287 288 4.384056 AGTCATCGCCAAGATTAAGGATG 58.616 43.478 0.00 0.00 37.52 3.51
288 289 4.101585 AGTCATCGCCAAGATTAAGGATGA 59.898 41.667 0.00 0.00 37.52 2.92
289 290 4.816385 GTCATCGCCAAGATTAAGGATGAA 59.184 41.667 3.38 0.00 41.11 2.57
290 291 5.049818 GTCATCGCCAAGATTAAGGATGAAG 60.050 44.000 3.38 0.00 41.11 3.02
291 292 3.206150 TCGCCAAGATTAAGGATGAAGC 58.794 45.455 0.00 0.00 0.00 3.86
292 293 2.291741 CGCCAAGATTAAGGATGAAGCC 59.708 50.000 0.00 0.00 0.00 4.35
293 294 3.560105 GCCAAGATTAAGGATGAAGCCT 58.440 45.455 0.00 0.00 40.93 4.58
294 295 3.567585 GCCAAGATTAAGGATGAAGCCTC 59.432 47.826 0.00 0.00 37.26 4.70
295 296 4.688321 GCCAAGATTAAGGATGAAGCCTCT 60.688 45.833 0.00 0.00 37.26 3.69
296 297 5.062528 CCAAGATTAAGGATGAAGCCTCTC 58.937 45.833 0.00 0.00 37.26 3.20
297 298 5.163216 CCAAGATTAAGGATGAAGCCTCTCT 60.163 44.000 0.00 0.00 37.26 3.10
298 299 6.355747 CAAGATTAAGGATGAAGCCTCTCTT 58.644 40.000 0.00 0.00 37.26 2.85
299 300 6.573712 AGATTAAGGATGAAGCCTCTCTTT 57.426 37.500 0.00 0.00 37.26 2.52
300 301 6.355747 AGATTAAGGATGAAGCCTCTCTTTG 58.644 40.000 0.00 0.00 37.26 2.77
301 302 3.362870 AAGGATGAAGCCTCTCTTTGG 57.637 47.619 0.00 0.00 37.26 3.28
302 303 1.563410 AGGATGAAGCCTCTCTTTGGG 59.437 52.381 0.00 0.00 34.56 4.12
307 308 2.665603 GCCTCTCTTTGGGCTCGT 59.334 61.111 0.00 0.00 44.48 4.18
308 309 1.743252 GCCTCTCTTTGGGCTCGTG 60.743 63.158 0.00 0.00 44.48 4.35
309 310 1.743252 CCTCTCTTTGGGCTCGTGC 60.743 63.158 0.00 0.00 38.76 5.34
310 311 2.048222 TCTCTTTGGGCTCGTGCG 60.048 61.111 3.02 0.00 40.82 5.34
311 312 3.121030 CTCTTTGGGCTCGTGCGG 61.121 66.667 3.02 0.00 40.82 5.69
312 313 4.697756 TCTTTGGGCTCGTGCGGG 62.698 66.667 3.02 0.00 40.82 6.13
326 327 2.462503 GCGGGTGCGAAGTATTTGA 58.537 52.632 0.00 0.00 0.00 2.69
327 328 0.373716 GCGGGTGCGAAGTATTTGAG 59.626 55.000 0.00 0.00 0.00 3.02
328 329 1.722011 CGGGTGCGAAGTATTTGAGT 58.278 50.000 0.00 0.00 0.00 3.41
329 330 1.393539 CGGGTGCGAAGTATTTGAGTG 59.606 52.381 0.00 0.00 0.00 3.51
330 331 2.695359 GGGTGCGAAGTATTTGAGTGA 58.305 47.619 0.00 0.00 0.00 3.41
331 332 3.270877 GGGTGCGAAGTATTTGAGTGAT 58.729 45.455 0.00 0.00 0.00 3.06
332 333 4.439057 GGGTGCGAAGTATTTGAGTGATA 58.561 43.478 0.00 0.00 0.00 2.15
333 334 5.057149 GGGTGCGAAGTATTTGAGTGATAT 58.943 41.667 0.00 0.00 0.00 1.63
334 335 6.220930 GGGTGCGAAGTATTTGAGTGATATA 58.779 40.000 0.00 0.00 0.00 0.86
335 336 6.704493 GGGTGCGAAGTATTTGAGTGATATAA 59.296 38.462 0.00 0.00 0.00 0.98
336 337 7.387948 GGGTGCGAAGTATTTGAGTGATATAAT 59.612 37.037 0.00 0.00 0.00 1.28
337 338 8.223769 GGTGCGAAGTATTTGAGTGATATAATG 58.776 37.037 0.00 0.00 0.00 1.90
338 339 7.742089 GTGCGAAGTATTTGAGTGATATAATGC 59.258 37.037 0.00 0.00 0.00 3.56
339 340 7.095229 TGCGAAGTATTTGAGTGATATAATGCC 60.095 37.037 0.00 0.00 0.00 4.40
340 341 7.448228 CGAAGTATTTGAGTGATATAATGCCG 58.552 38.462 0.00 0.00 0.00 5.69
341 342 7.116376 CGAAGTATTTGAGTGATATAATGCCGT 59.884 37.037 0.00 0.00 0.00 5.68
342 343 7.658179 AGTATTTGAGTGATATAATGCCGTG 57.342 36.000 0.00 0.00 0.00 4.94
343 344 7.441836 AGTATTTGAGTGATATAATGCCGTGA 58.558 34.615 0.00 0.00 0.00 4.35
344 345 6.791887 ATTTGAGTGATATAATGCCGTGAG 57.208 37.500 0.00 0.00 0.00 3.51
345 346 5.529581 TTGAGTGATATAATGCCGTGAGA 57.470 39.130 0.00 0.00 0.00 3.27
346 347 5.126396 TGAGTGATATAATGCCGTGAGAG 57.874 43.478 0.00 0.00 0.00 3.20
347 348 4.584743 TGAGTGATATAATGCCGTGAGAGT 59.415 41.667 0.00 0.00 0.00 3.24
348 349 5.768164 TGAGTGATATAATGCCGTGAGAGTA 59.232 40.000 0.00 0.00 0.00 2.59
349 350 6.264518 TGAGTGATATAATGCCGTGAGAGTAA 59.735 38.462 0.00 0.00 0.00 2.24
350 351 7.039714 TGAGTGATATAATGCCGTGAGAGTAAT 60.040 37.037 0.00 0.00 0.00 1.89
351 352 7.671302 AGTGATATAATGCCGTGAGAGTAATT 58.329 34.615 0.00 0.00 0.00 1.40
352 353 8.150945 AGTGATATAATGCCGTGAGAGTAATTT 58.849 33.333 0.00 0.00 0.00 1.82
353 354 8.223769 GTGATATAATGCCGTGAGAGTAATTTG 58.776 37.037 0.00 0.00 0.00 2.32
354 355 7.931407 TGATATAATGCCGTGAGAGTAATTTGT 59.069 33.333 0.00 0.00 0.00 2.83
355 356 9.419297 GATATAATGCCGTGAGAGTAATTTGTA 57.581 33.333 0.00 0.00 0.00 2.41
356 357 9.772973 ATATAATGCCGTGAGAGTAATTTGTAA 57.227 29.630 0.00 0.00 0.00 2.41
357 358 8.677148 ATAATGCCGTGAGAGTAATTTGTAAT 57.323 30.769 0.00 0.00 0.00 1.89
358 359 6.604735 ATGCCGTGAGAGTAATTTGTAATC 57.395 37.500 0.00 0.00 0.00 1.75
359 360 4.565166 TGCCGTGAGAGTAATTTGTAATCG 59.435 41.667 0.00 0.00 0.00 3.34
360 361 4.550255 GCCGTGAGAGTAATTTGTAATCGC 60.550 45.833 0.00 0.00 0.00 4.58
361 362 4.025979 CCGTGAGAGTAATTTGTAATCGCC 60.026 45.833 0.00 0.00 0.00 5.54
362 363 4.025979 CGTGAGAGTAATTTGTAATCGCCC 60.026 45.833 0.00 0.00 0.00 6.13
363 364 4.025979 GTGAGAGTAATTTGTAATCGCCCG 60.026 45.833 0.00 0.00 0.00 6.13
364 365 2.870411 AGAGTAATTTGTAATCGCCCGC 59.130 45.455 0.00 0.00 0.00 6.13
365 366 2.870411 GAGTAATTTGTAATCGCCCGCT 59.130 45.455 0.00 0.00 0.00 5.52
366 367 3.275999 AGTAATTTGTAATCGCCCGCTT 58.724 40.909 0.00 0.00 0.00 4.68
367 368 4.444536 AGTAATTTGTAATCGCCCGCTTA 58.555 39.130 0.00 0.00 0.00 3.09
368 369 3.963383 AATTTGTAATCGCCCGCTTAG 57.037 42.857 0.00 0.00 0.00 2.18
369 370 1.011333 TTTGTAATCGCCCGCTTAGC 58.989 50.000 0.00 0.00 0.00 3.09
370 371 0.108089 TTGTAATCGCCCGCTTAGCA 60.108 50.000 4.70 0.00 0.00 3.49
371 372 0.108089 TGTAATCGCCCGCTTAGCAA 60.108 50.000 4.70 0.00 0.00 3.91
372 373 1.011333 GTAATCGCCCGCTTAGCAAA 58.989 50.000 4.70 0.00 0.00 3.68
373 374 1.399089 GTAATCGCCCGCTTAGCAAAA 59.601 47.619 4.70 0.00 0.00 2.44
374 375 0.170339 AATCGCCCGCTTAGCAAAAC 59.830 50.000 4.70 0.00 0.00 2.43
375 376 1.654023 ATCGCCCGCTTAGCAAAACC 61.654 55.000 4.70 0.00 0.00 3.27
376 377 2.622011 CGCCCGCTTAGCAAAACCA 61.622 57.895 4.70 0.00 0.00 3.67
377 378 1.890174 GCCCGCTTAGCAAAACCAT 59.110 52.632 4.70 0.00 0.00 3.55
378 379 0.458370 GCCCGCTTAGCAAAACCATG 60.458 55.000 4.70 0.00 0.00 3.66
379 380 0.887933 CCCGCTTAGCAAAACCATGT 59.112 50.000 4.70 0.00 0.00 3.21
380 381 1.135402 CCCGCTTAGCAAAACCATGTC 60.135 52.381 4.70 0.00 0.00 3.06
381 382 1.812571 CCGCTTAGCAAAACCATGTCT 59.187 47.619 4.70 0.00 0.00 3.41
382 383 3.006940 CCGCTTAGCAAAACCATGTCTA 58.993 45.455 4.70 0.00 0.00 2.59
383 384 3.181510 CCGCTTAGCAAAACCATGTCTAC 60.182 47.826 4.70 0.00 0.00 2.59
384 385 3.684788 CGCTTAGCAAAACCATGTCTACT 59.315 43.478 4.70 0.00 0.00 2.57
385 386 4.201724 CGCTTAGCAAAACCATGTCTACTC 60.202 45.833 4.70 0.00 0.00 2.59
386 387 4.095036 GCTTAGCAAAACCATGTCTACTCC 59.905 45.833 0.00 0.00 0.00 3.85
387 388 5.491982 CTTAGCAAAACCATGTCTACTCCT 58.508 41.667 0.00 0.00 0.00 3.69
388 389 3.944087 AGCAAAACCATGTCTACTCCTC 58.056 45.455 0.00 0.00 0.00 3.71
389 390 3.584848 AGCAAAACCATGTCTACTCCTCT 59.415 43.478 0.00 0.00 0.00 3.69
390 391 4.042187 AGCAAAACCATGTCTACTCCTCTT 59.958 41.667 0.00 0.00 0.00 2.85
391 392 4.393371 GCAAAACCATGTCTACTCCTCTTC 59.607 45.833 0.00 0.00 0.00 2.87
392 393 5.799213 CAAAACCATGTCTACTCCTCTTCT 58.201 41.667 0.00 0.00 0.00 2.85
393 394 6.234177 CAAAACCATGTCTACTCCTCTTCTT 58.766 40.000 0.00 0.00 0.00 2.52
394 395 7.386851 CAAAACCATGTCTACTCCTCTTCTTA 58.613 38.462 0.00 0.00 0.00 2.10
395 396 7.554959 AAACCATGTCTACTCCTCTTCTTAA 57.445 36.000 0.00 0.00 0.00 1.85
396 397 7.741554 AACCATGTCTACTCCTCTTCTTAAT 57.258 36.000 0.00 0.00 0.00 1.40
397 398 7.741554 ACCATGTCTACTCCTCTTCTTAATT 57.258 36.000 0.00 0.00 0.00 1.40
398 399 8.840200 ACCATGTCTACTCCTCTTCTTAATTA 57.160 34.615 0.00 0.00 0.00 1.40
399 400 9.268282 ACCATGTCTACTCCTCTTCTTAATTAA 57.732 33.333 0.00 0.00 0.00 1.40
472 481 1.089112 TTGCCAGCGAATGATGTGAG 58.911 50.000 0.00 0.00 0.00 3.51
549 2750 3.944015 CAGAGTCCACATCTTCCCAAATC 59.056 47.826 0.00 0.00 0.00 2.17
715 2936 2.575993 CTCAGACAGAGGCCCGTG 59.424 66.667 0.00 0.00 40.84 4.94
743 2982 2.434331 CCCCAAGGAAGGCGAACA 59.566 61.111 0.00 0.00 33.47 3.18
745 2984 1.971695 CCCAAGGAAGGCGAACACC 60.972 63.158 0.00 0.00 0.00 4.16
924 3212 1.819288 AGCTCGAAAACGAGAGGATCA 59.181 47.619 20.93 0.00 38.18 2.92
925 3213 2.428890 AGCTCGAAAACGAGAGGATCAT 59.571 45.455 20.93 0.00 38.18 2.45
926 3214 2.792116 GCTCGAAAACGAGAGGATCATC 59.208 50.000 20.93 0.00 38.18 2.92
927 3215 3.376540 CTCGAAAACGAGAGGATCATCC 58.623 50.000 13.24 0.00 38.18 3.51
929 3217 1.861575 GAAAACGAGAGGATCATCCGC 59.138 52.381 15.08 0.00 42.75 5.54
930 3218 0.824109 AAACGAGAGGATCATCCGCA 59.176 50.000 10.43 0.00 42.75 5.69
931 3219 0.387202 AACGAGAGGATCATCCGCAG 59.613 55.000 10.43 5.83 42.75 5.18
1073 3393 0.892358 TCAGCAAGTACCGTCGGACT 60.892 55.000 20.51 13.96 0.00 3.85
1076 3396 1.585006 CAAGTACCGTCGGACTGCT 59.415 57.895 20.51 1.96 0.00 4.24
1078 3398 0.608582 AAGTACCGTCGGACTGCTCT 60.609 55.000 20.51 3.78 0.00 4.09
1167 3507 4.760047 GGCCTGCGTCCACGTCAT 62.760 66.667 0.00 0.00 42.22 3.06
1230 3579 0.826256 GTTCCGGGCCTTTTTGTCCT 60.826 55.000 0.84 0.00 0.00 3.85
1283 3637 3.716006 CACCTGTGCGCTTCCACG 61.716 66.667 9.73 0.00 38.55 4.94
1310 3668 0.325602 TTACTGGGCGGTAAAGGTGG 59.674 55.000 0.00 0.00 0.00 4.61
1312 3670 1.376812 CTGGGCGGTAAAGGTGGTC 60.377 63.158 0.00 0.00 0.00 4.02
1326 3684 1.810755 GGTGGTCATCCGTTTTCCTTC 59.189 52.381 0.00 0.00 36.30 3.46
1327 3685 1.810755 GTGGTCATCCGTTTTCCTTCC 59.189 52.381 0.00 0.00 36.30 3.46
1328 3686 1.084289 GGTCATCCGTTTTCCTTCCG 58.916 55.000 0.00 0.00 0.00 4.30
1341 3699 1.000506 TCCTTCCGTCGGAAAACAGAG 59.999 52.381 26.03 13.92 41.54 3.35
1346 3704 1.069906 CCGTCGGAAAACAGAGCAAAG 60.070 52.381 4.91 0.00 0.00 2.77
1364 3725 0.249911 AGAAATCATAGACGCCGGCC 60.250 55.000 23.46 7.92 0.00 6.13
1386 3823 0.243907 ATCAATACCGGGCGATCGAG 59.756 55.000 21.57 9.00 0.00 4.04
1391 3828 1.512996 TACCGGGCGATCGAGCTAAG 61.513 60.000 21.57 4.01 37.29 2.18
1392 3829 2.731348 CGGGCGATCGAGCTAAGC 60.731 66.667 21.57 0.00 37.29 3.09
1393 3830 2.417516 GGGCGATCGAGCTAAGCA 59.582 61.111 21.57 0.00 37.29 3.91
1403 3840 1.732405 CGAGCTAAGCATGTGACGTCA 60.732 52.381 15.76 15.76 0.00 4.35
1414 3851 5.877012 AGCATGTGACGTCAGATAAGATTTT 59.123 36.000 25.80 1.57 0.00 1.82
1415 3852 7.041721 AGCATGTGACGTCAGATAAGATTTTA 58.958 34.615 25.80 0.00 0.00 1.52
1423 3860 6.201044 ACGTCAGATAAGATTTTATTCGGCAG 59.799 38.462 0.00 0.00 29.67 4.85
1452 3892 1.355971 TCTTTGATAACCTCGTGCGC 58.644 50.000 0.00 0.00 0.00 6.09
1455 3895 2.658373 TTGATAACCTCGTGCGCTTA 57.342 45.000 9.73 0.00 0.00 3.09
1477 3921 1.076533 CGCGATGTAACAGACGGCTT 61.077 55.000 0.00 0.00 0.00 4.35
1479 3923 1.463444 GCGATGTAACAGACGGCTTTT 59.537 47.619 0.00 0.00 0.00 2.27
1480 3924 2.474032 GCGATGTAACAGACGGCTTTTC 60.474 50.000 0.00 0.00 0.00 2.29
1481 3925 2.993899 CGATGTAACAGACGGCTTTTCT 59.006 45.455 0.00 0.00 0.00 2.52
1482 3926 3.181530 CGATGTAACAGACGGCTTTTCTG 60.182 47.826 0.00 0.00 45.21 3.02
1516 3960 4.979943 TGAGTTGTTGATTGTCTTTGCA 57.020 36.364 0.00 0.00 0.00 4.08
1571 4238 1.079336 CCCCGTTCCGTCTCCTTTC 60.079 63.158 0.00 0.00 0.00 2.62
1624 4291 1.444119 AACGCAACGCCAAGACACAT 61.444 50.000 0.00 0.00 0.00 3.21
1724 4428 6.796705 ATTTAGTACAAACACACACCTAGC 57.203 37.500 0.00 0.00 0.00 3.42
1725 4429 5.540400 TTAGTACAAACACACACCTAGCT 57.460 39.130 0.00 0.00 0.00 3.32
1726 4430 6.653526 TTAGTACAAACACACACCTAGCTA 57.346 37.500 0.00 0.00 0.00 3.32
1727 4431 4.879598 AGTACAAACACACACCTAGCTAC 58.120 43.478 0.00 0.00 0.00 3.58
1728 4432 4.587684 AGTACAAACACACACCTAGCTACT 59.412 41.667 0.00 0.00 0.00 2.57
1729 4433 3.991367 ACAAACACACACCTAGCTACTC 58.009 45.455 0.00 0.00 0.00 2.59
1748 4452 1.611977 TCCTACATATTCGACGGCAGG 59.388 52.381 0.00 0.00 0.00 4.85
1760 4464 2.110213 GGCAGGTGGACACGTGAA 59.890 61.111 25.01 4.23 46.69 3.18
1761 4465 1.961277 GGCAGGTGGACACGTGAAG 60.961 63.158 25.01 0.00 46.69 3.02
1769 4476 1.911766 GACACGTGAAGGGGAGGGA 60.912 63.158 25.01 0.00 0.00 4.20
1967 4711 6.036517 CCATTCAGTTAGCACTAGAACATCAC 59.963 42.308 0.00 0.00 0.00 3.06
1979 4723 1.133025 GAACATCACAATTGGAGCCCG 59.867 52.381 10.83 0.00 0.00 6.13
1998 4742 4.923871 GCCCGTATGTATCTGACTGTATTG 59.076 45.833 0.00 0.00 0.00 1.90
2217 4961 3.139077 CTCGCACTTCCAGGTAAAAACT 58.861 45.455 0.00 0.00 0.00 2.66
2220 4968 5.124645 TCGCACTTCCAGGTAAAAACTAAA 58.875 37.500 0.00 0.00 0.00 1.85
2227 4975 4.888823 TCCAGGTAAAAACTAAACACCACC 59.111 41.667 0.00 0.00 0.00 4.61
2248 4996 1.966354 ACTGCTCACTCTCATGTGTGA 59.034 47.619 14.48 14.48 42.24 3.58
2267 5015 7.819644 TGTGTGAATTGATCCTACAAAATCAG 58.180 34.615 0.00 0.00 33.66 2.90
2272 5020 5.840243 TTGATCCTACAAAATCAGCCATG 57.160 39.130 0.00 0.00 33.66 3.66
2398 5164 3.163467 GGGGCTGGGTACTGTACTATAG 58.837 54.545 16.79 12.96 0.00 1.31
2405 5171 7.232127 GGCTGGGTACTGTACTATAGTAATCAA 59.768 40.741 14.20 0.78 32.84 2.57
2466 5232 1.609783 GTGGGGTTCAGCTAGGCAT 59.390 57.895 0.00 0.00 0.00 4.40
2538 5304 3.859650 CAAAGCTTGGACTGTGCTG 57.140 52.632 0.00 0.00 37.11 4.41
2591 5357 9.177608 TCATGGTTTAAGAATTAGAGTGATTGG 57.822 33.333 0.00 0.00 0.00 3.16
2846 5615 9.701098 ATTCGTTGAACACTACTCTTTTGTATA 57.299 29.630 0.00 0.00 0.00 1.47
2987 5765 2.370281 TGAAATGACTGACGAGCCTC 57.630 50.000 0.00 0.00 0.00 4.70
3166 5944 3.682292 GACGAGGCCGCCCATCTTT 62.682 63.158 5.55 0.00 39.95 2.52
3875 6659 3.451178 GCTACTGGGATAGGACTGTTTCA 59.549 47.826 0.00 0.00 0.00 2.69
4002 6789 8.677300 TCCAACTCAGAAGAAAATATATTGCAC 58.323 33.333 0.00 0.00 0.00 4.57
4020 6807 6.949578 TTGCACTTTTCTTGTTCTTTCAAG 57.050 33.333 0.00 0.00 44.08 3.02
4021 6808 4.864247 TGCACTTTTCTTGTTCTTTCAAGC 59.136 37.500 0.00 0.00 42.90 4.01
4022 6809 4.268644 GCACTTTTCTTGTTCTTTCAAGCC 59.731 41.667 0.00 0.00 42.90 4.35
4027 6814 8.424133 ACTTTTCTTGTTCTTTCAAGCCAATAT 58.576 29.630 0.00 0.00 42.90 1.28
4041 6828 9.995003 TTCAAGCCAATATAAAATTTCACACTT 57.005 25.926 0.00 0.00 0.00 3.16
4058 6845 6.345298 TCACACTTTCTGTACTTGTGATCAA 58.655 36.000 0.00 0.00 41.20 2.57
4071 6858 4.356405 TGTGATCAAGTGAAGACATGGT 57.644 40.909 0.00 0.00 0.00 3.55
4075 6862 5.295292 GTGATCAAGTGAAGACATGGTATGG 59.705 44.000 0.00 0.00 33.60 2.74
4082 6869 3.774766 TGAAGACATGGTATGGCAGTACT 59.225 43.478 0.00 0.00 42.15 2.73
4083 6870 4.225042 TGAAGACATGGTATGGCAGTACTT 59.775 41.667 0.00 0.00 42.15 2.24
4084 6871 4.142609 AGACATGGTATGGCAGTACTTG 57.857 45.455 0.00 0.00 42.15 3.16
4271 7058 2.342279 CGGAAAGTCGAGGGCACA 59.658 61.111 0.00 0.00 0.00 4.57
4364 7151 0.995024 ACAAGGATGGGAACTGGGAG 59.005 55.000 0.00 0.00 0.00 4.30
4370 7157 1.856539 ATGGGAACTGGGAGTGCTGG 61.857 60.000 0.00 0.00 0.00 4.85
4585 7372 2.485814 GCCCTTCGGATCATAGAATTGC 59.514 50.000 0.00 0.02 0.00 3.56
4603 7390 1.966762 CGGTTGCTGGATTTTGGCT 59.033 52.632 0.00 0.00 0.00 4.75
4625 7412 1.003355 CCAGCAATCCTGTGACCGT 60.003 57.895 0.00 0.00 40.06 4.83
4743 7530 4.860022 TCCCCATTTCTCTGAAATTCCTC 58.140 43.478 3.13 0.00 0.00 3.71
4748 7535 6.210185 CCCATTTCTCTGAAATTCCTCTGTTT 59.790 38.462 3.13 0.00 0.00 2.83
4749 7536 7.394359 CCCATTTCTCTGAAATTCCTCTGTTTA 59.606 37.037 3.13 0.00 0.00 2.01
4765 7552 8.424918 TCCTCTGTTTATTTCTAGTGATCCATC 58.575 37.037 0.00 0.00 0.00 3.51
4767 7554 8.324191 TCTGTTTATTTCTAGTGATCCATCCT 57.676 34.615 0.00 0.00 0.00 3.24
4806 7593 0.318762 ACTTCTTGTGCCTCGAGTCC 59.681 55.000 12.31 2.40 0.00 3.85
4811 7598 0.888619 TTGTGCCTCGAGTCCTGTAG 59.111 55.000 12.31 0.00 0.00 2.74
4828 7777 5.905331 TCCTGTAGGAATCCATAAGTCATGT 59.095 40.000 0.61 0.00 42.18 3.21
4829 7778 6.386927 TCCTGTAGGAATCCATAAGTCATGTT 59.613 38.462 0.61 0.00 42.18 2.71
4830 7779 6.708054 CCTGTAGGAATCCATAAGTCATGTTC 59.292 42.308 0.61 0.00 37.39 3.18
4831 7780 6.591935 TGTAGGAATCCATAAGTCATGTTCC 58.408 40.000 0.61 0.00 38.91 3.62
4832 7781 4.708177 AGGAATCCATAAGTCATGTTCCG 58.292 43.478 0.61 0.00 41.48 4.30
4833 7782 3.815401 GGAATCCATAAGTCATGTTCCGG 59.185 47.826 0.00 0.00 32.87 5.14
4834 7783 4.451900 GAATCCATAAGTCATGTTCCGGT 58.548 43.478 0.00 0.00 32.21 5.28
4846 7803 8.658499 AGTCATGTTCCGGTATTATTTTCTAC 57.342 34.615 0.00 0.00 0.00 2.59
4848 7805 9.754382 GTCATGTTCCGGTATTATTTTCTACTA 57.246 33.333 0.00 0.00 0.00 1.82
4892 7849 8.455903 TTGAGATTTTATGCTATCCAAAGAGG 57.544 34.615 0.00 0.00 39.47 3.69
4907 7866 0.621082 AGAGGCCCTTAGTTGCTTCC 59.379 55.000 0.00 0.00 34.42 3.46
4915 7874 4.559502 GCCCTTAGTTGCTTCCTTTTCTTG 60.560 45.833 0.00 0.00 0.00 3.02
4919 7878 6.476706 CCTTAGTTGCTTCCTTTTCTTGTTTG 59.523 38.462 0.00 0.00 0.00 2.93
4920 7879 5.405935 AGTTGCTTCCTTTTCTTGTTTGT 57.594 34.783 0.00 0.00 0.00 2.83
4923 7882 6.147656 AGTTGCTTCCTTTTCTTGTTTGTTTG 59.852 34.615 0.00 0.00 0.00 2.93
4927 7886 6.291796 GCTTCCTTTTCTTGTTTGTTTGATCG 60.292 38.462 0.00 0.00 0.00 3.69
4992 7951 5.530915 TGGGGCTATTCAATTCAAACTATCG 59.469 40.000 0.00 0.00 0.00 2.92
5008 7969 9.531942 TCAAACTATCGTAACACTACAGAAAAA 57.468 29.630 0.00 0.00 0.00 1.94
5016 7977 6.145696 CGTAACACTACAGAAAAAGGAGAAGG 59.854 42.308 0.00 0.00 0.00 3.46
5051 8014 5.130350 ACAGTGCTAAAGTTCCTAAAAGCA 58.870 37.500 0.00 0.00 37.62 3.91
5052 8015 5.239525 ACAGTGCTAAAGTTCCTAAAAGCAG 59.760 40.000 0.00 0.00 40.36 4.24
5053 8016 5.470098 CAGTGCTAAAGTTCCTAAAAGCAGA 59.530 40.000 0.00 0.00 40.36 4.26
5057 8020 6.770785 TGCTAAAGTTCCTAAAAGCAGAGAAA 59.229 34.615 0.00 0.00 35.20 2.52
5058 8021 7.448469 TGCTAAAGTTCCTAAAAGCAGAGAAAT 59.552 33.333 0.00 0.00 35.20 2.17
5059 8022 8.300286 GCTAAAGTTCCTAAAAGCAGAGAAATT 58.700 33.333 0.00 0.00 0.00 1.82
5150 8113 5.880901 ACTGGAGTAGATTTCATTGTTGGT 58.119 37.500 0.00 0.00 0.00 3.67
5153 8116 7.038302 ACTGGAGTAGATTTCATTGTTGGTCTA 60.038 37.037 0.00 0.00 0.00 2.59
5188 8151 5.185828 GCCAATATTTACATCTCCCCCAATC 59.814 44.000 0.00 0.00 0.00 2.67
5239 8212 2.227194 ACAGGAGGGTTTTAAGTTGCG 58.773 47.619 0.00 0.00 0.00 4.85
5341 8316 4.018597 GCCTAAGATCATCCAATCCCTCAT 60.019 45.833 0.00 0.00 0.00 2.90
5349 8324 3.769739 TCCAATCCCTCATGTATTCGG 57.230 47.619 0.00 0.00 0.00 4.30
5400 8375 0.106318 GGCTGGCCTTTCATGGAGAT 60.106 55.000 3.32 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.388499 GGGCCGCCGTCTCTTGAA 62.388 66.667 2.55 0.00 0.00 2.69
10 11 4.115199 AAGATGAGGTGGGCCGCC 62.115 66.667 28.99 28.99 40.50 6.13
11 12 2.514824 GAAGATGAGGTGGGCCGC 60.515 66.667 9.05 9.05 40.50 6.53
12 13 2.190578 GGAAGATGAGGTGGGCCG 59.809 66.667 0.00 0.00 40.50 6.13
13 14 1.225704 CTGGAAGATGAGGTGGGCC 59.774 63.158 0.00 0.00 34.07 5.80
14 15 0.393537 CACTGGAAGATGAGGTGGGC 60.394 60.000 0.00 0.00 37.43 5.36
15 16 0.393537 GCACTGGAAGATGAGGTGGG 60.394 60.000 0.00 0.00 37.43 4.61
16 17 0.393537 GGCACTGGAAGATGAGGTGG 60.394 60.000 0.00 0.00 37.43 4.61
17 18 0.742281 CGGCACTGGAAGATGAGGTG 60.742 60.000 0.00 0.00 37.43 4.00
18 19 1.599047 CGGCACTGGAAGATGAGGT 59.401 57.895 0.00 0.00 37.43 3.85
19 20 1.153289 CCGGCACTGGAAGATGAGG 60.153 63.158 0.00 0.00 37.43 3.86
20 21 0.036010 AACCGGCACTGGAAGATGAG 60.036 55.000 0.00 0.00 37.43 2.90
21 22 0.036388 GAACCGGCACTGGAAGATGA 60.036 55.000 0.00 0.00 37.43 2.92
22 23 0.321564 TGAACCGGCACTGGAAGATG 60.322 55.000 0.00 0.00 37.43 2.90
23 24 0.620556 ATGAACCGGCACTGGAAGAT 59.379 50.000 0.00 0.00 37.43 2.40
24 25 0.400213 AATGAACCGGCACTGGAAGA 59.600 50.000 0.00 0.00 37.43 2.87
25 26 0.523072 CAATGAACCGGCACTGGAAG 59.477 55.000 0.00 0.00 42.29 3.46
26 27 0.179004 ACAATGAACCGGCACTGGAA 60.179 50.000 0.00 0.00 0.00 3.53
27 28 0.888736 CACAATGAACCGGCACTGGA 60.889 55.000 0.00 0.00 0.00 3.86
28 29 0.888736 TCACAATGAACCGGCACTGG 60.889 55.000 0.00 0.00 0.00 4.00
29 30 0.518636 CTCACAATGAACCGGCACTG 59.481 55.000 0.00 0.00 0.00 3.66
30 31 0.396435 TCTCACAATGAACCGGCACT 59.604 50.000 0.00 0.00 0.00 4.40
31 32 0.798776 CTCTCACAATGAACCGGCAC 59.201 55.000 0.00 0.00 0.00 5.01
32 33 0.396435 ACTCTCACAATGAACCGGCA 59.604 50.000 0.00 0.00 0.00 5.69
33 34 0.798776 CACTCTCACAATGAACCGGC 59.201 55.000 0.00 0.00 0.00 6.13
34 35 1.800586 CACACTCTCACAATGAACCGG 59.199 52.381 0.00 0.00 0.00 5.28
35 36 1.800586 CCACACTCTCACAATGAACCG 59.199 52.381 0.00 0.00 0.00 4.44
36 37 2.808543 GTCCACACTCTCACAATGAACC 59.191 50.000 0.00 0.00 0.00 3.62
37 38 2.476619 CGTCCACACTCTCACAATGAAC 59.523 50.000 0.00 0.00 0.00 3.18
38 39 2.547855 CCGTCCACACTCTCACAATGAA 60.548 50.000 0.00 0.00 0.00 2.57
39 40 1.000843 CCGTCCACACTCTCACAATGA 59.999 52.381 0.00 0.00 0.00 2.57
40 41 1.000843 TCCGTCCACACTCTCACAATG 59.999 52.381 0.00 0.00 0.00 2.82
41 42 1.273606 CTCCGTCCACACTCTCACAAT 59.726 52.381 0.00 0.00 0.00 2.71
42 43 0.673985 CTCCGTCCACACTCTCACAA 59.326 55.000 0.00 0.00 0.00 3.33
43 44 0.179001 TCTCCGTCCACACTCTCACA 60.179 55.000 0.00 0.00 0.00 3.58
44 45 1.178276 ATCTCCGTCCACACTCTCAC 58.822 55.000 0.00 0.00 0.00 3.51
45 46 1.924731 AATCTCCGTCCACACTCTCA 58.075 50.000 0.00 0.00 0.00 3.27
46 47 4.451629 TTTAATCTCCGTCCACACTCTC 57.548 45.455 0.00 0.00 0.00 3.20
47 48 4.283722 AGTTTTAATCTCCGTCCACACTCT 59.716 41.667 0.00 0.00 0.00 3.24
48 49 4.566987 AGTTTTAATCTCCGTCCACACTC 58.433 43.478 0.00 0.00 0.00 3.51
49 50 4.618920 AGTTTTAATCTCCGTCCACACT 57.381 40.909 0.00 0.00 0.00 3.55
50 51 4.143179 CGAAGTTTTAATCTCCGTCCACAC 60.143 45.833 0.00 0.00 0.00 3.82
51 52 3.991773 CGAAGTTTTAATCTCCGTCCACA 59.008 43.478 0.00 0.00 0.00 4.17
52 53 3.181523 GCGAAGTTTTAATCTCCGTCCAC 60.182 47.826 0.00 0.00 0.00 4.02
53 54 2.997986 GCGAAGTTTTAATCTCCGTCCA 59.002 45.455 0.00 0.00 0.00 4.02
54 55 3.259902 AGCGAAGTTTTAATCTCCGTCC 58.740 45.455 0.00 0.00 0.00 4.79
55 56 4.435651 CCAAGCGAAGTTTTAATCTCCGTC 60.436 45.833 0.00 0.00 0.00 4.79
56 57 3.435671 CCAAGCGAAGTTTTAATCTCCGT 59.564 43.478 0.00 0.00 0.00 4.69
57 58 3.435671 ACCAAGCGAAGTTTTAATCTCCG 59.564 43.478 0.00 0.00 0.00 4.63
58 59 5.372547 AACCAAGCGAAGTTTTAATCTCC 57.627 39.130 0.00 0.00 0.00 3.71
59 60 6.915843 TGAAAACCAAGCGAAGTTTTAATCTC 59.084 34.615 11.90 3.31 44.11 2.75
60 61 6.695713 GTGAAAACCAAGCGAAGTTTTAATCT 59.304 34.615 11.90 0.00 44.11 2.40
61 62 6.344702 CGTGAAAACCAAGCGAAGTTTTAATC 60.345 38.462 11.90 3.86 44.11 1.75
62 63 5.457473 CGTGAAAACCAAGCGAAGTTTTAAT 59.543 36.000 11.90 0.00 44.11 1.40
63 64 4.794246 CGTGAAAACCAAGCGAAGTTTTAA 59.206 37.500 11.90 4.58 44.11 1.52
64 65 4.094590 TCGTGAAAACCAAGCGAAGTTTTA 59.905 37.500 11.90 0.00 44.11 1.52
65 66 3.119779 TCGTGAAAACCAAGCGAAGTTTT 60.120 39.130 11.79 11.79 46.11 2.43
66 67 2.420722 TCGTGAAAACCAAGCGAAGTTT 59.579 40.909 0.00 0.00 37.80 2.66
67 68 2.011222 TCGTGAAAACCAAGCGAAGTT 58.989 42.857 0.00 0.00 0.00 2.66
68 69 1.329599 GTCGTGAAAACCAAGCGAAGT 59.670 47.619 0.00 0.00 33.30 3.01
69 70 1.329292 TGTCGTGAAAACCAAGCGAAG 59.671 47.619 0.00 0.00 33.30 3.79
70 71 1.370609 TGTCGTGAAAACCAAGCGAA 58.629 45.000 0.00 0.00 33.30 4.70
71 72 1.529438 GATGTCGTGAAAACCAAGCGA 59.471 47.619 0.00 0.00 0.00 4.93
72 73 1.721489 CGATGTCGTGAAAACCAAGCG 60.721 52.381 0.00 0.00 34.11 4.68
73 74 1.529438 TCGATGTCGTGAAAACCAAGC 59.471 47.619 2.04 0.00 40.80 4.01
74 75 2.096417 GGTCGATGTCGTGAAAACCAAG 60.096 50.000 2.04 0.00 40.80 3.61
75 76 1.868498 GGTCGATGTCGTGAAAACCAA 59.132 47.619 2.04 0.00 40.80 3.67
76 77 1.504359 GGTCGATGTCGTGAAAACCA 58.496 50.000 2.04 0.00 40.80 3.67
77 78 0.794473 GGGTCGATGTCGTGAAAACC 59.206 55.000 2.04 2.37 40.80 3.27
78 79 0.437295 CGGGTCGATGTCGTGAAAAC 59.563 55.000 2.04 0.00 40.80 2.43
79 80 0.314618 TCGGGTCGATGTCGTGAAAA 59.685 50.000 2.04 0.00 40.80 2.29
80 81 0.387622 GTCGGGTCGATGTCGTGAAA 60.388 55.000 2.04 0.00 38.42 2.69
81 82 1.210931 GTCGGGTCGATGTCGTGAA 59.789 57.895 2.04 0.00 38.42 3.18
82 83 1.918868 CTGTCGGGTCGATGTCGTGA 61.919 60.000 2.04 0.00 38.42 4.35
83 84 1.514228 CTGTCGGGTCGATGTCGTG 60.514 63.158 2.04 0.00 38.42 4.35
84 85 1.030488 ATCTGTCGGGTCGATGTCGT 61.030 55.000 2.04 0.00 38.42 4.34
85 86 0.100682 AATCTGTCGGGTCGATGTCG 59.899 55.000 0.00 0.00 38.42 4.35
86 87 1.560923 CAATCTGTCGGGTCGATGTC 58.439 55.000 0.00 0.00 38.42 3.06
87 88 0.175760 CCAATCTGTCGGGTCGATGT 59.824 55.000 0.00 0.00 38.42 3.06
88 89 0.459899 TCCAATCTGTCGGGTCGATG 59.540 55.000 0.00 0.00 38.42 3.84
89 90 0.747255 CTCCAATCTGTCGGGTCGAT 59.253 55.000 0.00 0.00 38.42 3.59
90 91 0.323087 TCTCCAATCTGTCGGGTCGA 60.323 55.000 0.00 0.00 0.00 4.20
91 92 0.179134 GTCTCCAATCTGTCGGGTCG 60.179 60.000 0.00 0.00 0.00 4.79
92 93 1.187087 AGTCTCCAATCTGTCGGGTC 58.813 55.000 0.00 0.00 0.00 4.46
93 94 1.276421 CAAGTCTCCAATCTGTCGGGT 59.724 52.381 0.00 0.00 0.00 5.28
94 95 1.276421 ACAAGTCTCCAATCTGTCGGG 59.724 52.381 0.00 0.00 0.00 5.14
95 96 2.341257 CACAAGTCTCCAATCTGTCGG 58.659 52.381 0.00 0.00 0.00 4.79
96 97 1.728971 GCACAAGTCTCCAATCTGTCG 59.271 52.381 0.00 0.00 0.00 4.35
97 98 2.079925 GGCACAAGTCTCCAATCTGTC 58.920 52.381 0.00 0.00 0.00 3.51
98 99 1.271597 GGGCACAAGTCTCCAATCTGT 60.272 52.381 0.00 0.00 0.00 3.41
99 100 1.004044 AGGGCACAAGTCTCCAATCTG 59.996 52.381 0.00 0.00 0.00 2.90
100 101 1.280421 GAGGGCACAAGTCTCCAATCT 59.720 52.381 0.00 0.00 0.00 2.40
101 102 1.743996 GAGGGCACAAGTCTCCAATC 58.256 55.000 0.00 0.00 0.00 2.67
102 103 0.036010 CGAGGGCACAAGTCTCCAAT 60.036 55.000 0.00 0.00 0.00 3.16
103 104 1.118965 TCGAGGGCACAAGTCTCCAA 61.119 55.000 0.00 0.00 0.00 3.53
104 105 0.904865 ATCGAGGGCACAAGTCTCCA 60.905 55.000 0.00 0.00 0.00 3.86
105 106 0.460987 CATCGAGGGCACAAGTCTCC 60.461 60.000 0.00 0.00 0.00 3.71
106 107 0.532573 TCATCGAGGGCACAAGTCTC 59.467 55.000 0.00 0.00 0.00 3.36
107 108 0.534412 CTCATCGAGGGCACAAGTCT 59.466 55.000 0.00 0.00 0.00 3.24
108 109 0.460987 CCTCATCGAGGGCACAAGTC 60.461 60.000 1.84 0.00 45.43 3.01
109 110 1.599047 CCTCATCGAGGGCACAAGT 59.401 57.895 1.84 0.00 45.43 3.16
110 111 4.528674 CCTCATCGAGGGCACAAG 57.471 61.111 1.84 0.00 45.43 3.16
118 119 0.392998 CCCACCAAACCCTCATCGAG 60.393 60.000 0.00 0.00 0.00 4.04
119 120 0.838554 TCCCACCAAACCCTCATCGA 60.839 55.000 0.00 0.00 0.00 3.59
120 121 0.676782 GTCCCACCAAACCCTCATCG 60.677 60.000 0.00 0.00 0.00 3.84
121 122 0.676782 CGTCCCACCAAACCCTCATC 60.677 60.000 0.00 0.00 0.00 2.92
122 123 1.131303 TCGTCCCACCAAACCCTCAT 61.131 55.000 0.00 0.00 0.00 2.90
123 124 1.764571 CTCGTCCCACCAAACCCTCA 61.765 60.000 0.00 0.00 0.00 3.86
124 125 1.003718 CTCGTCCCACCAAACCCTC 60.004 63.158 0.00 0.00 0.00 4.30
125 126 2.526046 CCTCGTCCCACCAAACCCT 61.526 63.158 0.00 0.00 0.00 4.34
126 127 2.033602 CCTCGTCCCACCAAACCC 59.966 66.667 0.00 0.00 0.00 4.11
127 128 0.466739 AAACCTCGTCCCACCAAACC 60.467 55.000 0.00 0.00 0.00 3.27
128 129 0.666374 CAAACCTCGTCCCACCAAAC 59.334 55.000 0.00 0.00 0.00 2.93
129 130 0.256464 ACAAACCTCGTCCCACCAAA 59.744 50.000 0.00 0.00 0.00 3.28
130 131 0.179040 GACAAACCTCGTCCCACCAA 60.179 55.000 0.00 0.00 0.00 3.67
131 132 1.338890 TGACAAACCTCGTCCCACCA 61.339 55.000 0.00 0.00 32.15 4.17
132 133 0.883370 GTGACAAACCTCGTCCCACC 60.883 60.000 0.00 0.00 32.15 4.61
133 134 0.179067 TGTGACAAACCTCGTCCCAC 60.179 55.000 0.00 0.00 32.15 4.61
134 135 0.542333 TTGTGACAAACCTCGTCCCA 59.458 50.000 0.00 0.00 32.15 4.37
135 136 1.202604 TCTTGTGACAAACCTCGTCCC 60.203 52.381 0.00 0.00 32.15 4.46
136 137 2.135933 CTCTTGTGACAAACCTCGTCC 58.864 52.381 0.00 0.00 32.15 4.79
137 138 2.135933 CCTCTTGTGACAAACCTCGTC 58.864 52.381 0.00 0.00 0.00 4.20
138 139 1.202651 CCCTCTTGTGACAAACCTCGT 60.203 52.381 0.00 0.00 0.00 4.18
139 140 1.512926 CCCTCTTGTGACAAACCTCG 58.487 55.000 0.00 0.00 0.00 4.63
140 141 1.143073 ACCCCTCTTGTGACAAACCTC 59.857 52.381 0.00 0.00 0.00 3.85
141 142 1.133792 CACCCCTCTTGTGACAAACCT 60.134 52.381 0.00 0.00 35.74 3.50
142 143 1.133915 TCACCCCTCTTGTGACAAACC 60.134 52.381 0.00 0.00 37.80 3.27
143 144 2.341846 TCACCCCTCTTGTGACAAAC 57.658 50.000 0.00 0.00 37.80 2.93
148 149 1.816863 GCGAGTCACCCCTCTTGTGA 61.817 60.000 0.00 0.00 40.28 3.58
149 150 1.374758 GCGAGTCACCCCTCTTGTG 60.375 63.158 0.00 0.00 35.01 3.33
150 151 2.932234 CGCGAGTCACCCCTCTTGT 61.932 63.158 0.00 0.00 0.00 3.16
151 152 2.125912 CGCGAGTCACCCCTCTTG 60.126 66.667 0.00 0.00 0.00 3.02
152 153 4.070552 GCGCGAGTCACCCCTCTT 62.071 66.667 12.10 0.00 0.00 2.85
154 155 4.373116 TTGCGCGAGTCACCCCTC 62.373 66.667 12.10 0.00 0.00 4.30
155 156 4.379243 CTTGCGCGAGTCACCCCT 62.379 66.667 16.99 0.00 0.00 4.79
159 160 3.482783 GAGCCTTGCGCGAGTCAC 61.483 66.667 22.94 12.05 44.76 3.67
166 167 2.474712 GTGTTACGAGCCTTGCGC 59.525 61.111 0.00 0.00 37.98 6.09
167 168 0.949105 AAGGTGTTACGAGCCTTGCG 60.949 55.000 5.22 0.00 40.71 4.85
168 169 2.928416 AAGGTGTTACGAGCCTTGC 58.072 52.632 5.22 0.00 40.71 4.01
170 171 2.301870 TCATCAAGGTGTTACGAGCCTT 59.698 45.455 0.00 0.00 42.77 4.35
171 172 1.899814 TCATCAAGGTGTTACGAGCCT 59.100 47.619 0.00 0.00 0.00 4.58
172 173 2.380084 TCATCAAGGTGTTACGAGCC 57.620 50.000 0.00 0.00 0.00 4.70
173 174 2.030946 GCATCATCAAGGTGTTACGAGC 59.969 50.000 0.00 0.00 0.00 5.03
174 175 3.525537 AGCATCATCAAGGTGTTACGAG 58.474 45.455 0.00 0.00 0.00 4.18
175 176 3.610040 AGCATCATCAAGGTGTTACGA 57.390 42.857 0.00 0.00 0.00 3.43
176 177 3.436704 ACAAGCATCATCAAGGTGTTACG 59.563 43.478 0.00 0.00 0.00 3.18
177 178 5.156355 CAACAAGCATCATCAAGGTGTTAC 58.844 41.667 0.00 0.00 0.00 2.50
178 179 4.321156 GCAACAAGCATCATCAAGGTGTTA 60.321 41.667 0.00 0.00 44.79 2.41
179 180 3.553508 GCAACAAGCATCATCAAGGTGTT 60.554 43.478 0.00 0.00 44.79 3.32
180 181 2.029649 GCAACAAGCATCATCAAGGTGT 60.030 45.455 0.00 0.00 44.79 4.16
181 182 2.602878 GCAACAAGCATCATCAAGGTG 58.397 47.619 0.00 0.00 44.79 4.00
182 183 1.200716 CGCAACAAGCATCATCAAGGT 59.799 47.619 0.00 0.00 46.13 3.50
183 184 1.200716 ACGCAACAAGCATCATCAAGG 59.799 47.619 0.00 0.00 46.13 3.61
184 185 2.247637 CACGCAACAAGCATCATCAAG 58.752 47.619 0.00 0.00 46.13 3.02
185 186 1.068402 CCACGCAACAAGCATCATCAA 60.068 47.619 0.00 0.00 46.13 2.57
186 187 0.522626 CCACGCAACAAGCATCATCA 59.477 50.000 0.00 0.00 46.13 3.07
187 188 0.179156 CCCACGCAACAAGCATCATC 60.179 55.000 0.00 0.00 46.13 2.92
188 189 0.608856 TCCCACGCAACAAGCATCAT 60.609 50.000 0.00 0.00 46.13 2.45
189 190 0.821301 TTCCCACGCAACAAGCATCA 60.821 50.000 0.00 0.00 46.13 3.07
190 191 0.313672 TTTCCCACGCAACAAGCATC 59.686 50.000 0.00 0.00 46.13 3.91
191 192 0.968405 ATTTCCCACGCAACAAGCAT 59.032 45.000 0.00 0.00 46.13 3.79
192 193 0.313672 GATTTCCCACGCAACAAGCA 59.686 50.000 0.00 0.00 46.13 3.91
193 194 0.598065 AGATTTCCCACGCAACAAGC 59.402 50.000 0.00 0.00 40.87 4.01
194 195 1.879380 TCAGATTTCCCACGCAACAAG 59.121 47.619 0.00 0.00 0.00 3.16
195 196 1.974265 TCAGATTTCCCACGCAACAA 58.026 45.000 0.00 0.00 0.00 2.83
196 197 1.974265 TTCAGATTTCCCACGCAACA 58.026 45.000 0.00 0.00 0.00 3.33
197 198 2.034053 TGTTTCAGATTTCCCACGCAAC 59.966 45.455 0.00 0.00 0.00 4.17
198 199 2.302260 TGTTTCAGATTTCCCACGCAA 58.698 42.857 0.00 0.00 0.00 4.85
199 200 1.974265 TGTTTCAGATTTCCCACGCA 58.026 45.000 0.00 0.00 0.00 5.24
200 201 2.922335 GCTTGTTTCAGATTTCCCACGC 60.922 50.000 0.00 0.00 0.00 5.34
201 202 2.665519 CGCTTGTTTCAGATTTCCCACG 60.666 50.000 0.00 0.00 0.00 4.94
202 203 2.922335 GCGCTTGTTTCAGATTTCCCAC 60.922 50.000 0.00 0.00 0.00 4.61
203 204 1.269448 GCGCTTGTTTCAGATTTCCCA 59.731 47.619 0.00 0.00 0.00 4.37
204 205 1.269448 TGCGCTTGTTTCAGATTTCCC 59.731 47.619 9.73 0.00 0.00 3.97
205 206 2.704725 TGCGCTTGTTTCAGATTTCC 57.295 45.000 9.73 0.00 0.00 3.13
206 207 3.181537 GCATTGCGCTTGTTTCAGATTTC 60.182 43.478 9.73 0.00 37.77 2.17
207 208 2.733026 GCATTGCGCTTGTTTCAGATTT 59.267 40.909 9.73 0.00 37.77 2.17
208 209 2.331194 GCATTGCGCTTGTTTCAGATT 58.669 42.857 9.73 0.00 37.77 2.40
209 210 1.986698 GCATTGCGCTTGTTTCAGAT 58.013 45.000 9.73 0.00 37.77 2.90
210 211 3.477504 GCATTGCGCTTGTTTCAGA 57.522 47.368 9.73 0.00 37.77 3.27
222 223 1.937391 CGGAAGATCCTCGCATTGC 59.063 57.895 0.00 0.00 33.30 3.56
228 229 1.084370 GGTGTTGCGGAAGATCCTCG 61.084 60.000 0.00 0.00 33.30 4.63
229 230 1.084370 CGGTGTTGCGGAAGATCCTC 61.084 60.000 0.00 0.00 33.30 3.71
230 231 1.079127 CGGTGTTGCGGAAGATCCT 60.079 57.895 0.00 0.00 33.30 3.24
231 232 2.750888 GCGGTGTTGCGGAAGATCC 61.751 63.158 0.00 0.00 0.00 3.36
232 233 2.750888 GGCGGTGTTGCGGAAGATC 61.751 63.158 0.00 0.00 35.06 2.75
233 234 2.746277 GGCGGTGTTGCGGAAGAT 60.746 61.111 0.00 0.00 35.06 2.40
243 244 4.764771 TAGTAGGGGCGGCGGTGT 62.765 66.667 9.78 0.00 0.00 4.16
244 245 4.217159 GTAGTAGGGGCGGCGGTG 62.217 72.222 9.78 0.00 0.00 4.94
248 249 2.519302 TACGGTAGTAGGGGCGGC 60.519 66.667 0.00 0.00 0.00 6.53
249 250 3.755434 CTACGGTAGTAGGGGCGG 58.245 66.667 7.01 0.00 44.97 6.13
255 256 8.167487 AATCTTGGCGATGACTACGGTAGTAG 62.167 46.154 20.10 11.50 42.91 2.57
256 257 2.330440 TGGCGATGACTACGGTAGTA 57.670 50.000 20.10 9.71 39.59 1.82
257 258 1.404391 CTTGGCGATGACTACGGTAGT 59.596 52.381 20.17 20.17 42.86 2.73
258 259 1.674441 TCTTGGCGATGACTACGGTAG 59.326 52.381 13.49 13.49 0.00 3.18
259 260 1.753930 TCTTGGCGATGACTACGGTA 58.246 50.000 0.00 0.00 0.00 4.02
260 261 1.112113 ATCTTGGCGATGACTACGGT 58.888 50.000 0.00 0.00 0.00 4.83
261 262 2.225068 AATCTTGGCGATGACTACGG 57.775 50.000 0.00 0.00 31.20 4.02
262 263 3.736252 CCTTAATCTTGGCGATGACTACG 59.264 47.826 0.00 0.00 31.20 3.51
263 264 4.945246 TCCTTAATCTTGGCGATGACTAC 58.055 43.478 0.00 0.00 31.20 2.73
264 265 5.304357 TCATCCTTAATCTTGGCGATGACTA 59.696 40.000 0.00 0.00 33.12 2.59
265 266 4.101585 TCATCCTTAATCTTGGCGATGACT 59.898 41.667 0.00 0.00 33.12 3.41
266 267 4.380531 TCATCCTTAATCTTGGCGATGAC 58.619 43.478 0.00 0.00 33.12 3.06
267 268 4.687901 TCATCCTTAATCTTGGCGATGA 57.312 40.909 0.00 0.00 35.08 2.92
268 269 4.320057 GCTTCATCCTTAATCTTGGCGATG 60.320 45.833 0.00 0.00 31.20 3.84
269 270 3.817647 GCTTCATCCTTAATCTTGGCGAT 59.182 43.478 0.00 0.00 0.00 4.58
270 271 3.206150 GCTTCATCCTTAATCTTGGCGA 58.794 45.455 0.00 0.00 0.00 5.54
271 272 2.291741 GGCTTCATCCTTAATCTTGGCG 59.708 50.000 0.00 0.00 0.00 5.69
272 273 3.560105 AGGCTTCATCCTTAATCTTGGC 58.440 45.455 0.00 0.00 30.82 4.52
273 274 5.046288 AGAGGCTTCATCCTTAATCTTGG 57.954 43.478 0.00 0.00 36.38 3.61
274 275 5.927819 AGAGAGGCTTCATCCTTAATCTTG 58.072 41.667 0.00 0.00 36.38 3.02
275 276 6.573712 AAGAGAGGCTTCATCCTTAATCTT 57.426 37.500 0.00 0.00 36.38 2.40
276 277 6.355747 CAAAGAGAGGCTTCATCCTTAATCT 58.644 40.000 0.00 0.00 36.38 2.40
277 278 5.530543 CCAAAGAGAGGCTTCATCCTTAATC 59.469 44.000 0.00 0.00 36.38 1.75
278 279 5.444176 CCAAAGAGAGGCTTCATCCTTAAT 58.556 41.667 0.00 0.00 36.38 1.40
279 280 4.324563 CCCAAAGAGAGGCTTCATCCTTAA 60.325 45.833 0.00 0.00 36.38 1.85
280 281 3.200825 CCCAAAGAGAGGCTTCATCCTTA 59.799 47.826 0.00 0.00 36.38 2.69
281 282 2.025510 CCCAAAGAGAGGCTTCATCCTT 60.026 50.000 0.00 0.00 36.38 3.36
282 283 1.563410 CCCAAAGAGAGGCTTCATCCT 59.437 52.381 0.00 0.00 39.67 3.24
283 284 2.021208 GCCCAAAGAGAGGCTTCATCC 61.021 57.143 0.00 0.00 46.14 3.51
284 285 1.387539 GCCCAAAGAGAGGCTTCATC 58.612 55.000 0.00 0.00 46.14 2.92
285 286 3.584947 GCCCAAAGAGAGGCTTCAT 57.415 52.632 0.00 0.00 46.14 2.57
291 292 1.743252 GCACGAGCCCAAAGAGAGG 60.743 63.158 0.00 0.00 33.58 3.69
292 293 2.097038 CGCACGAGCCCAAAGAGAG 61.097 63.158 0.00 0.00 37.52 3.20
293 294 2.048222 CGCACGAGCCCAAAGAGA 60.048 61.111 0.00 0.00 37.52 3.10
294 295 3.121030 CCGCACGAGCCCAAAGAG 61.121 66.667 0.00 0.00 37.52 2.85
295 296 4.697756 CCCGCACGAGCCCAAAGA 62.698 66.667 0.00 0.00 37.52 2.52
303 304 2.884087 ATACTTCGCACCCGCACGAG 62.884 60.000 0.00 0.00 39.81 4.18
304 305 2.495366 AATACTTCGCACCCGCACGA 62.495 55.000 0.00 0.00 38.40 4.35
305 306 1.632046 AAATACTTCGCACCCGCACG 61.632 55.000 0.00 0.00 38.40 5.34
306 307 0.179200 CAAATACTTCGCACCCGCAC 60.179 55.000 0.00 0.00 38.40 5.34
307 308 0.320858 TCAAATACTTCGCACCCGCA 60.321 50.000 0.00 0.00 38.40 5.69
308 309 0.373716 CTCAAATACTTCGCACCCGC 59.626 55.000 0.00 0.00 0.00 6.13
309 310 1.393539 CACTCAAATACTTCGCACCCG 59.606 52.381 0.00 0.00 0.00 5.28
310 311 2.695359 TCACTCAAATACTTCGCACCC 58.305 47.619 0.00 0.00 0.00 4.61
311 312 7.709269 TTATATCACTCAAATACTTCGCACC 57.291 36.000 0.00 0.00 0.00 5.01
312 313 7.742089 GCATTATATCACTCAAATACTTCGCAC 59.258 37.037 0.00 0.00 0.00 5.34
313 314 7.095229 GGCATTATATCACTCAAATACTTCGCA 60.095 37.037 0.00 0.00 0.00 5.10
314 315 7.237173 GGCATTATATCACTCAAATACTTCGC 58.763 38.462 0.00 0.00 0.00 4.70
315 316 7.116376 ACGGCATTATATCACTCAAATACTTCG 59.884 37.037 0.00 0.00 0.00 3.79
316 317 8.223769 CACGGCATTATATCACTCAAATACTTC 58.776 37.037 0.00 0.00 0.00 3.01
317 318 7.931407 TCACGGCATTATATCACTCAAATACTT 59.069 33.333 0.00 0.00 0.00 2.24
318 319 7.441836 TCACGGCATTATATCACTCAAATACT 58.558 34.615 0.00 0.00 0.00 2.12
319 320 7.598869 TCTCACGGCATTATATCACTCAAATAC 59.401 37.037 0.00 0.00 0.00 1.89
320 321 7.666623 TCTCACGGCATTATATCACTCAAATA 58.333 34.615 0.00 0.00 0.00 1.40
321 322 6.524734 TCTCACGGCATTATATCACTCAAAT 58.475 36.000 0.00 0.00 0.00 2.32
322 323 5.912892 TCTCACGGCATTATATCACTCAAA 58.087 37.500 0.00 0.00 0.00 2.69
323 324 5.069119 ACTCTCACGGCATTATATCACTCAA 59.931 40.000 0.00 0.00 0.00 3.02
324 325 4.584743 ACTCTCACGGCATTATATCACTCA 59.415 41.667 0.00 0.00 0.00 3.41
325 326 5.127693 ACTCTCACGGCATTATATCACTC 57.872 43.478 0.00 0.00 0.00 3.51
326 327 6.650427 TTACTCTCACGGCATTATATCACT 57.350 37.500 0.00 0.00 0.00 3.41
327 328 7.891183 AATTACTCTCACGGCATTATATCAC 57.109 36.000 0.00 0.00 0.00 3.06
328 329 7.931407 ACAAATTACTCTCACGGCATTATATCA 59.069 33.333 0.00 0.00 0.00 2.15
329 330 8.311650 ACAAATTACTCTCACGGCATTATATC 57.688 34.615 0.00 0.00 0.00 1.63
330 331 9.772973 TTACAAATTACTCTCACGGCATTATAT 57.227 29.630 0.00 0.00 0.00 0.86
331 332 9.772973 ATTACAAATTACTCTCACGGCATTATA 57.227 29.630 0.00 0.00 0.00 0.98
332 333 8.677148 ATTACAAATTACTCTCACGGCATTAT 57.323 30.769 0.00 0.00 0.00 1.28
333 334 7.042992 CGATTACAAATTACTCTCACGGCATTA 60.043 37.037 0.00 0.00 0.00 1.90
334 335 6.238103 CGATTACAAATTACTCTCACGGCATT 60.238 38.462 0.00 0.00 0.00 3.56
335 336 5.234329 CGATTACAAATTACTCTCACGGCAT 59.766 40.000 0.00 0.00 0.00 4.40
336 337 4.565166 CGATTACAAATTACTCTCACGGCA 59.435 41.667 0.00 0.00 0.00 5.69
337 338 4.550255 GCGATTACAAATTACTCTCACGGC 60.550 45.833 0.00 0.00 0.00 5.68
338 339 4.025979 GGCGATTACAAATTACTCTCACGG 60.026 45.833 0.00 0.00 0.00 4.94
339 340 4.025979 GGGCGATTACAAATTACTCTCACG 60.026 45.833 0.00 0.00 0.00 4.35
340 341 4.025979 CGGGCGATTACAAATTACTCTCAC 60.026 45.833 0.00 0.00 0.00 3.51
341 342 4.116961 CGGGCGATTACAAATTACTCTCA 58.883 43.478 0.00 0.00 0.00 3.27
342 343 3.059800 GCGGGCGATTACAAATTACTCTC 60.060 47.826 0.00 0.00 0.00 3.20
343 344 2.870411 GCGGGCGATTACAAATTACTCT 59.130 45.455 0.00 0.00 0.00 3.24
344 345 2.870411 AGCGGGCGATTACAAATTACTC 59.130 45.455 0.00 0.00 0.00 2.59
345 346 2.914059 AGCGGGCGATTACAAATTACT 58.086 42.857 0.00 0.00 0.00 2.24
346 347 3.685836 AAGCGGGCGATTACAAATTAC 57.314 42.857 0.00 0.00 0.00 1.89
347 348 3.249080 GCTAAGCGGGCGATTACAAATTA 59.751 43.478 0.00 0.00 0.00 1.40
348 349 2.032924 GCTAAGCGGGCGATTACAAATT 59.967 45.455 0.00 0.00 0.00 1.82
349 350 1.602377 GCTAAGCGGGCGATTACAAAT 59.398 47.619 0.00 0.00 0.00 2.32
350 351 1.011333 GCTAAGCGGGCGATTACAAA 58.989 50.000 0.00 0.00 0.00 2.83
351 352 0.108089 TGCTAAGCGGGCGATTACAA 60.108 50.000 0.00 0.00 0.00 2.41
352 353 0.108089 TTGCTAAGCGGGCGATTACA 60.108 50.000 0.00 0.00 0.00 2.41
353 354 1.011333 TTTGCTAAGCGGGCGATTAC 58.989 50.000 0.00 0.00 0.00 1.89
354 355 1.399089 GTTTTGCTAAGCGGGCGATTA 59.601 47.619 0.00 0.00 0.00 1.75
355 356 0.170339 GTTTTGCTAAGCGGGCGATT 59.830 50.000 0.00 0.00 0.00 3.34
356 357 1.654023 GGTTTTGCTAAGCGGGCGAT 61.654 55.000 0.00 0.00 0.00 4.58
357 358 2.329614 GGTTTTGCTAAGCGGGCGA 61.330 57.895 0.00 0.00 0.00 5.54
358 359 1.933115 ATGGTTTTGCTAAGCGGGCG 61.933 55.000 0.00 0.00 0.00 6.13
359 360 0.458370 CATGGTTTTGCTAAGCGGGC 60.458 55.000 0.00 0.00 0.00 6.13
360 361 0.887933 ACATGGTTTTGCTAAGCGGG 59.112 50.000 0.00 0.00 0.00 6.13
361 362 1.812571 AGACATGGTTTTGCTAAGCGG 59.187 47.619 0.00 0.00 0.00 5.52
362 363 3.684788 AGTAGACATGGTTTTGCTAAGCG 59.315 43.478 0.00 0.00 0.00 4.68
363 364 4.095036 GGAGTAGACATGGTTTTGCTAAGC 59.905 45.833 0.00 0.00 0.00 3.09
364 365 5.491982 AGGAGTAGACATGGTTTTGCTAAG 58.508 41.667 0.00 0.00 0.00 2.18
365 366 5.248477 AGAGGAGTAGACATGGTTTTGCTAA 59.752 40.000 0.00 0.00 0.00 3.09
366 367 4.777896 AGAGGAGTAGACATGGTTTTGCTA 59.222 41.667 0.00 0.00 0.00 3.49
367 368 3.584848 AGAGGAGTAGACATGGTTTTGCT 59.415 43.478 0.00 0.00 0.00 3.91
368 369 3.944087 AGAGGAGTAGACATGGTTTTGC 58.056 45.455 0.00 0.00 0.00 3.68
369 370 5.799213 AGAAGAGGAGTAGACATGGTTTTG 58.201 41.667 0.00 0.00 0.00 2.44
370 371 6.441088 AAGAAGAGGAGTAGACATGGTTTT 57.559 37.500 0.00 0.00 0.00 2.43
371 372 7.554959 TTAAGAAGAGGAGTAGACATGGTTT 57.445 36.000 0.00 0.00 0.00 3.27
372 373 7.741554 ATTAAGAAGAGGAGTAGACATGGTT 57.258 36.000 0.00 0.00 0.00 3.67
373 374 7.741554 AATTAAGAAGAGGAGTAGACATGGT 57.258 36.000 0.00 0.00 0.00 3.55
433 434 4.024977 GCAATCCAACACGATTTGCTTTTT 60.025 37.500 0.00 0.00 29.85 1.94
434 435 3.494251 GCAATCCAACACGATTTGCTTTT 59.506 39.130 0.00 0.00 29.85 2.27
508 517 4.133820 TCTGTTTCTTCCTTCGCAAATCA 58.866 39.130 0.00 0.00 0.00 2.57
728 2967 2.325082 CGGTGTTCGCCTTCCTTGG 61.325 63.158 0.95 0.00 0.00 3.61
849 3133 4.445735 GGGTTGGAATGGAATCCTCGATAA 60.446 45.833 0.00 0.00 40.35 1.75
1230 3579 3.059386 GGGGAAATTGGCGCGACA 61.059 61.111 12.71 12.71 0.00 4.35
1283 3637 2.174363 ACCGCCCAGTAAAAGTACAC 57.826 50.000 0.00 0.00 32.12 2.90
1310 3668 1.730612 GACGGAAGGAAAACGGATGAC 59.269 52.381 0.00 0.00 0.00 3.06
1312 3670 0.719465 CGACGGAAGGAAAACGGATG 59.281 55.000 0.00 0.00 0.00 3.51
1326 3684 0.941542 TTTGCTCTGTTTTCCGACGG 59.058 50.000 7.84 7.84 0.00 4.79
1327 3685 1.864711 TCTTTGCTCTGTTTTCCGACG 59.135 47.619 0.00 0.00 0.00 5.12
1328 3686 3.963383 TTCTTTGCTCTGTTTTCCGAC 57.037 42.857 0.00 0.00 0.00 4.79
1341 3699 2.286418 CCGGCGTCTATGATTTCTTTGC 60.286 50.000 6.01 0.00 0.00 3.68
1346 3704 0.531974 TGGCCGGCGTCTATGATTTC 60.532 55.000 22.54 1.63 0.00 2.17
1364 3725 1.194547 CGATCGCCCGGTATTGATTTG 59.805 52.381 0.26 0.00 0.00 2.32
1386 3823 1.996292 TCTGACGTCACATGCTTAGC 58.004 50.000 15.76 0.00 0.00 3.09
1391 3828 5.725110 AAATCTTATCTGACGTCACATGC 57.275 39.130 15.76 0.00 0.00 4.06
1392 3829 9.855361 GAATAAAATCTTATCTGACGTCACATG 57.145 33.333 15.76 5.45 0.00 3.21
1393 3830 8.755941 CGAATAAAATCTTATCTGACGTCACAT 58.244 33.333 15.76 13.18 0.00 3.21
1403 3840 5.316987 CCCCTGCCGAATAAAATCTTATCT 58.683 41.667 0.00 0.00 0.00 1.98
1414 3851 2.375174 AGATTATTGCCCCTGCCGAATA 59.625 45.455 0.00 0.00 36.33 1.75
1415 3852 1.145738 AGATTATTGCCCCTGCCGAAT 59.854 47.619 0.00 0.00 36.33 3.34
1423 3860 5.048713 CGAGGTTATCAAAGATTATTGCCCC 60.049 44.000 0.00 0.00 0.00 5.80
1452 3892 2.776765 CGTCTGTTACATCGCGACTAAG 59.223 50.000 12.93 4.33 0.00 2.18
1455 3895 0.179171 CCGTCTGTTACATCGCGACT 60.179 55.000 12.93 1.21 0.00 4.18
1491 3935 6.648310 TGCAAAGACAATCAACAACTCAAAAA 59.352 30.769 0.00 0.00 0.00 1.94
1492 3936 6.162079 TGCAAAGACAATCAACAACTCAAAA 58.838 32.000 0.00 0.00 0.00 2.44
1493 3937 5.718146 TGCAAAGACAATCAACAACTCAAA 58.282 33.333 0.00 0.00 0.00 2.69
1494 3938 5.321959 TGCAAAGACAATCAACAACTCAA 57.678 34.783 0.00 0.00 0.00 3.02
1495 3939 4.979943 TGCAAAGACAATCAACAACTCA 57.020 36.364 0.00 0.00 0.00 3.41
1496 3940 4.204978 CGTTGCAAAGACAATCAACAACTC 59.795 41.667 6.52 0.00 38.85 3.01
1497 3941 4.104776 CGTTGCAAAGACAATCAACAACT 58.895 39.130 6.52 0.00 38.85 3.16
1498 3942 4.101942 TCGTTGCAAAGACAATCAACAAC 58.898 39.130 11.22 0.00 38.85 3.32
1499 3943 4.362932 TCGTTGCAAAGACAATCAACAA 57.637 36.364 11.22 0.00 38.85 2.83
1500 3944 4.095632 TCTTCGTTGCAAAGACAATCAACA 59.904 37.500 14.89 0.00 38.85 3.33
1501 3945 4.597079 TCTTCGTTGCAAAGACAATCAAC 58.403 39.130 14.89 0.00 36.42 3.18
1504 3948 5.510671 TCTTTCTTCGTTGCAAAGACAATC 58.489 37.500 14.89 0.00 32.41 2.67
1505 3949 5.499139 TCTTTCTTCGTTGCAAAGACAAT 57.501 34.783 14.89 0.00 32.41 2.71
1506 3950 4.201910 CCTCTTTCTTCGTTGCAAAGACAA 60.202 41.667 14.89 8.05 33.55 3.18
1507 3951 3.312421 CCTCTTTCTTCGTTGCAAAGACA 59.688 43.478 14.89 1.93 33.55 3.41
1508 3952 3.560068 TCCTCTTTCTTCGTTGCAAAGAC 59.440 43.478 14.89 0.00 33.55 3.01
1516 3960 2.368875 TGCCTCTTCCTCTTTCTTCGTT 59.631 45.455 0.00 0.00 0.00 3.85
1655 4328 2.358267 GCTGAAGATGCTGCTGCTATTT 59.642 45.455 17.00 7.77 40.48 1.40
1658 4334 0.463295 GGCTGAAGATGCTGCTGCTA 60.463 55.000 17.00 3.79 40.48 3.49
1723 4427 3.670091 GCCGTCGAATATGTAGGAGTAGC 60.670 52.174 0.00 0.00 0.00 3.58
1724 4428 3.501062 TGCCGTCGAATATGTAGGAGTAG 59.499 47.826 0.00 0.00 0.00 2.57
1725 4429 3.479489 TGCCGTCGAATATGTAGGAGTA 58.521 45.455 0.00 0.00 0.00 2.59
1726 4430 2.293677 CTGCCGTCGAATATGTAGGAGT 59.706 50.000 0.00 0.00 0.00 3.85
1727 4431 2.351835 CCTGCCGTCGAATATGTAGGAG 60.352 54.545 0.00 0.00 0.00 3.69
1728 4432 1.611977 CCTGCCGTCGAATATGTAGGA 59.388 52.381 0.00 0.00 0.00 2.94
1729 4433 1.340248 ACCTGCCGTCGAATATGTAGG 59.660 52.381 0.00 0.00 0.00 3.18
1748 4452 1.004918 CTCCCCTTCACGTGTCCAC 60.005 63.158 16.51 0.00 0.00 4.02
1756 4460 0.251209 GTGGTTTCCCTCCCCTTCAC 60.251 60.000 0.00 0.00 0.00 3.18
1760 4464 2.526046 CGTGTGGTTTCCCTCCCCT 61.526 63.158 0.00 0.00 0.00 4.79
1761 4465 2.033602 CGTGTGGTTTCCCTCCCC 59.966 66.667 0.00 0.00 0.00 4.81
1967 4711 3.748048 CAGATACATACGGGCTCCAATTG 59.252 47.826 0.00 0.00 0.00 2.32
1998 4742 4.402155 TCAACCTGCATCCAATCAATTACC 59.598 41.667 0.00 0.00 0.00 2.85
2217 4961 1.488812 AGTGAGCAGTGGTGGTGTTTA 59.511 47.619 0.00 0.00 33.41 2.01
2220 4968 1.050988 AGAGTGAGCAGTGGTGGTGT 61.051 55.000 0.00 0.00 33.41 4.16
2227 4975 2.067013 CACACATGAGAGTGAGCAGTG 58.933 52.381 0.00 0.00 42.05 3.66
2248 4996 6.684613 GCATGGCTGATTTTGTAGGATCAATT 60.685 38.462 0.00 0.00 32.33 2.32
2267 5015 1.434622 CGGAGTCTCACATGCATGGC 61.435 60.000 29.41 13.92 0.00 4.40
2272 5020 1.599171 CGAGATCGGAGTCTCACATGC 60.599 57.143 1.47 0.00 43.84 4.06
2398 5164 6.321181 TCAACCTGCCCTGATTAATTGATTAC 59.679 38.462 0.00 0.00 0.00 1.89
2405 5171 4.141869 GCAAATCAACCTGCCCTGATTAAT 60.142 41.667 0.00 0.00 40.54 1.40
2466 5232 6.291532 CGCGAATTCATTGAACTTGTTTTTGA 60.292 34.615 0.00 0.00 0.00 2.69
2535 5301 5.506317 GCTCCCATGTTTAATCATGTACAGC 60.506 44.000 20.05 18.50 42.29 4.40
2538 5304 6.543831 AGAAGCTCCCATGTTTAATCATGTAC 59.456 38.462 20.05 9.88 42.29 2.90
2556 5322 7.622893 AATTCTTAAACCATGAGAGAAGCTC 57.377 36.000 0.00 0.00 44.21 4.09
2987 5765 0.102481 GCAGGCAGCTGGAAATGATG 59.898 55.000 17.12 0.00 41.15 3.07
3166 5944 1.962306 GTTGTAGGGCGCGAAACCA 60.962 57.895 12.10 0.00 0.00 3.67
3343 6125 8.296713 ACACACCTGAAAATGTTAATGTCATAC 58.703 33.333 0.00 0.00 0.00 2.39
3875 6659 2.304180 CCCACTCTCAACATCCTTGAGT 59.696 50.000 9.36 0.00 44.58 3.41
3962 6746 5.047566 TGAGTTGGAATTTCACCTCTTCA 57.952 39.130 12.12 0.00 0.00 3.02
4002 6789 8.822652 ATATTGGCTTGAAAGAACAAGAAAAG 57.177 30.769 11.75 0.00 46.85 2.27
4016 6803 9.995003 AAAGTGTGAAATTTTATATTGGCTTGA 57.005 25.926 0.00 0.00 0.00 3.02
4020 6807 9.423061 ACAGAAAGTGTGAAATTTTATATTGGC 57.577 29.630 0.00 0.00 38.28 4.52
4027 6814 9.781834 CACAAGTACAGAAAGTGTGAAATTTTA 57.218 29.630 0.00 0.00 41.67 1.52
4030 6817 7.624360 TCACAAGTACAGAAAGTGTGAAATT 57.376 32.000 2.48 0.00 44.06 1.82
4058 6845 2.573462 ACTGCCATACCATGTCTTCACT 59.427 45.455 0.00 0.00 0.00 3.41
4059 6846 2.991250 ACTGCCATACCATGTCTTCAC 58.009 47.619 0.00 0.00 0.00 3.18
4063 6850 3.682718 GCAAGTACTGCCATACCATGTCT 60.683 47.826 0.00 0.00 46.13 3.41
4084 6871 0.886563 AGCCATGCTGAACTGAAAGC 59.113 50.000 0.00 0.00 37.57 3.51
4106 6893 2.674357 CTGTGCTGCTTTGCAAGTTTTT 59.326 40.909 0.00 0.00 45.12 1.94
4107 6894 2.273557 CTGTGCTGCTTTGCAAGTTTT 58.726 42.857 0.00 0.00 45.12 2.43
4108 6895 1.472026 CCTGTGCTGCTTTGCAAGTTT 60.472 47.619 0.00 0.00 45.12 2.66
4229 7016 1.330655 CCTCGCTAGCCTTCTCCCAA 61.331 60.000 9.66 0.00 0.00 4.12
4271 7058 1.494960 CCTTCTCAAGGCTCCTAGCT 58.505 55.000 0.00 0.00 42.78 3.32
4364 7151 3.282021 TGATTTCTCTAATGGCCAGCAC 58.718 45.455 13.05 0.00 0.00 4.40
4370 7157 2.939103 ACGCACTGATTTCTCTAATGGC 59.061 45.455 0.00 0.00 0.00 4.40
4543 7330 5.765677 GGGCTCTTATAGGGAAAGAAATCAC 59.234 44.000 0.00 0.00 32.77 3.06
4585 7372 1.133025 CTAGCCAAAATCCAGCAACCG 59.867 52.381 0.00 0.00 0.00 4.44
4603 7390 0.253044 GTCACAGGATTGCTGGCCTA 59.747 55.000 10.12 0.00 32.03 3.93
4743 7530 8.970859 AAGGATGGATCACTAGAAATAAACAG 57.029 34.615 0.00 0.00 0.00 3.16
4748 7535 6.787458 TGCCTAAGGATGGATCACTAGAAATA 59.213 38.462 0.00 0.00 0.00 1.40
4749 7536 5.608437 TGCCTAAGGATGGATCACTAGAAAT 59.392 40.000 0.00 0.00 0.00 2.17
4787 7574 0.318762 GGACTCGAGGCACAAGAAGT 59.681 55.000 22.31 0.00 0.00 3.01
4788 7575 0.605589 AGGACTCGAGGCACAAGAAG 59.394 55.000 22.31 0.00 0.00 2.85
4798 7585 2.656002 TGGATTCCTACAGGACTCGAG 58.344 52.381 11.84 11.84 45.39 4.04
4801 7588 5.598830 TGACTTATGGATTCCTACAGGACTC 59.401 44.000 3.95 7.01 45.39 3.36
4806 7593 6.708054 GGAACATGACTTATGGATTCCTACAG 59.292 42.308 0.00 0.00 41.25 2.74
4811 7598 3.815401 CCGGAACATGACTTATGGATTCC 59.185 47.826 0.00 0.00 41.25 3.01
4849 7806 9.985730 AAATCTCAATTGAAATGTGCTAAGAAA 57.014 25.926 9.88 0.00 0.00 2.52
4854 7811 9.304731 GCATAAAATCTCAATTGAAATGTGCTA 57.695 29.630 9.88 0.00 0.00 3.49
4855 7812 8.038944 AGCATAAAATCTCAATTGAAATGTGCT 58.961 29.630 9.88 14.32 0.00 4.40
4856 7813 8.193250 AGCATAAAATCTCAATTGAAATGTGC 57.807 30.769 9.88 12.60 0.00 4.57
4866 7823 9.075678 CCTCTTTGGATAGCATAAAATCTCAAT 57.924 33.333 0.00 0.00 38.35 2.57
4867 7824 7.013655 GCCTCTTTGGATAGCATAAAATCTCAA 59.986 37.037 0.00 0.00 38.35 3.02
4868 7825 6.488006 GCCTCTTTGGATAGCATAAAATCTCA 59.512 38.462 0.00 0.00 38.35 3.27
4869 7826 6.072230 GGCCTCTTTGGATAGCATAAAATCTC 60.072 42.308 0.00 0.00 38.35 2.75
4870 7827 5.772169 GGCCTCTTTGGATAGCATAAAATCT 59.228 40.000 0.00 0.00 38.35 2.40
4871 7828 5.047731 GGGCCTCTTTGGATAGCATAAAATC 60.048 44.000 0.84 0.00 38.35 2.17
4872 7829 4.835056 GGGCCTCTTTGGATAGCATAAAAT 59.165 41.667 0.84 0.00 38.35 1.82
4877 7834 1.527457 AGGGCCTCTTTGGATAGCAT 58.473 50.000 0.00 0.00 38.35 3.79
4892 7849 3.157881 AGAAAAGGAAGCAACTAAGGGC 58.842 45.455 0.00 0.00 0.00 5.19
4907 7866 6.966632 TCTGACGATCAAACAAACAAGAAAAG 59.033 34.615 0.00 0.00 0.00 2.27
4915 7874 6.360681 CCAAGAAATCTGACGATCAAACAAAC 59.639 38.462 0.00 0.00 0.00 2.93
4919 7878 4.695455 TCCCAAGAAATCTGACGATCAAAC 59.305 41.667 0.00 0.00 0.00 2.93
4920 7879 4.905429 TCCCAAGAAATCTGACGATCAAA 58.095 39.130 0.00 0.00 0.00 2.69
4923 7882 4.697514 TCATCCCAAGAAATCTGACGATC 58.302 43.478 0.00 0.00 0.00 3.69
4969 7928 6.002062 CGATAGTTTGAATTGAATAGCCCC 57.998 41.667 0.00 0.00 0.00 5.80
4992 7951 6.990939 ACCTTCTCCTTTTTCTGTAGTGTTAC 59.009 38.462 0.00 0.00 0.00 2.50
5016 7977 2.094762 AGCACTGTCGGGTGATAAAC 57.905 50.000 7.94 0.00 39.34 2.01
5127 8090 5.880901 ACCAACAATGAAATCTACTCCAGT 58.119 37.500 0.00 0.00 0.00 4.00
5128 8091 6.176183 AGACCAACAATGAAATCTACTCCAG 58.824 40.000 0.00 0.00 0.00 3.86
5129 8092 6.126863 AGACCAACAATGAAATCTACTCCA 57.873 37.500 0.00 0.00 0.00 3.86
5130 8093 7.103641 TGTAGACCAACAATGAAATCTACTCC 58.896 38.462 9.81 0.00 37.29 3.85
5131 8094 8.607459 CATGTAGACCAACAATGAAATCTACTC 58.393 37.037 9.81 0.00 37.29 2.59
5150 8113 9.679661 TGTAAATATTGGCTTCTTTCATGTAGA 57.320 29.630 0.00 0.00 0.00 2.59
5153 8116 9.193806 AGATGTAAATATTGGCTTCTTTCATGT 57.806 29.630 0.00 0.00 0.00 3.21
5188 8151 3.954904 ACTAGATAGTACTGGTGGTGCAG 59.045 47.826 5.39 0.00 34.13 4.41
5231 8194 5.161358 CAGATTCACAGTAGTCGCAACTTA 58.839 41.667 0.00 0.00 36.92 2.24
5239 8212 6.451393 AGTTTCTGACAGATTCACAGTAGTC 58.549 40.000 5.87 0.00 33.93 2.59
5341 8316 1.470979 GCCTTCGAGCTTCCGAATACA 60.471 52.381 10.30 0.00 45.85 2.29
5349 8324 4.459089 AGCCGGCCTTCGAGCTTC 62.459 66.667 26.15 0.00 40.60 3.86
5400 8375 5.617609 CGCTCGTGTTCTTTAAATGATCAA 58.382 37.500 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.