Multiple sequence alignment - TraesCS7D01G252100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G252100 chr7D 100.000 3896 0 0 1 3896 227165869 227169764 0.000000e+00 7195.0
1 TraesCS7D01G252100 chr7D 86.241 407 47 7 116 516 497340905 497340502 2.150000e-117 433.0
2 TraesCS7D01G252100 chr7D 89.091 55 5 1 3837 3891 591219310 591219257 2.510000e-07 67.6
3 TraesCS7D01G252100 chr7B 93.521 3272 115 25 603 3828 198932347 198935567 0.000000e+00 4778.0
4 TraesCS7D01G252100 chr7B 87.348 411 40 11 116 516 525621682 525621274 9.860000e-126 460.0
5 TraesCS7D01G252100 chr7B 86.298 416 39 15 116 516 525688558 525688146 1.660000e-118 436.0
6 TraesCS7D01G252100 chr7B 84.428 411 47 13 117 513 74603786 74604193 4.720000e-104 388.0
7 TraesCS7D01G252100 chr7B 89.831 59 3 3 538 595 198930566 198930622 5.400000e-09 73.1
8 TraesCS7D01G252100 chr7B 91.304 46 4 0 3812 3857 198935581 198935626 3.250000e-06 63.9
9 TraesCS7D01G252100 chr7A 94.719 2651 93 20 607 3251 239030518 239033127 0.000000e+00 4076.0
10 TraesCS7D01G252100 chr6D 87.654 405 40 8 121 515 329442061 329442465 2.740000e-126 462.0
11 TraesCS7D01G252100 chr6D 86.553 409 45 9 117 516 55938071 55937664 3.570000e-120 442.0
12 TraesCS7D01G252100 chr5A 86.914 405 43 9 121 516 649456489 649456892 2.760000e-121 446.0
13 TraesCS7D01G252100 chr1B 86.534 401 41 10 121 516 559094242 559093850 2.780000e-116 429.0
14 TraesCS7D01G252100 chr1B 84.946 93 11 3 3258 3349 597463994 597464084 1.490000e-14 91.6
15 TraesCS7D01G252100 chr5B 84.367 403 51 9 121 516 450317304 450316907 6.110000e-103 385.0
16 TraesCS7D01G252100 chr5B 89.011 91 10 0 3257 3347 315928857 315928947 3.180000e-21 113.0
17 TraesCS7D01G252100 chr3D 95.522 67 3 0 3256 3322 172356706 172356640 1.480000e-19 108.0
18 TraesCS7D01G252100 chr5D 85.714 91 13 0 3257 3347 277822106 277822196 3.200000e-16 97.1
19 TraesCS7D01G252100 chr5D 86.364 88 8 2 3264 3347 332041783 332041696 4.140000e-15 93.5
20 TraesCS7D01G252100 chr1A 89.610 77 7 1 3243 3319 22295368 22295293 3.200000e-16 97.1
21 TraesCS7D01G252100 chr1A 84.946 93 11 3 3258 3349 537963938 537963848 1.490000e-14 91.6
22 TraesCS7D01G252100 chr2A 85.714 91 7 5 3255 3344 52122927 52122842 1.490000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G252100 chr7D 227165869 227169764 3895 False 7195.000000 7195 100.000 1 3896 1 chr7D.!!$F1 3895
1 TraesCS7D01G252100 chr7B 198930566 198935626 5060 False 1638.333333 4778 91.552 538 3857 3 chr7B.!!$F2 3319
2 TraesCS7D01G252100 chr7A 239030518 239033127 2609 False 4076.000000 4076 94.719 607 3251 1 chr7A.!!$F1 2644

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
361 362 0.105246 ATTTTTGGCCCAGACCACCA 60.105 50.0 0.0 0.0 40.19 4.17 F
1014 2741 0.179004 TCGCCATGAACAACCACCTT 60.179 50.0 0.0 0.0 0.00 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1860 3590 0.394216 CCCGCTGGATTCCAATGTCA 60.394 55.0 6.88 0.0 30.8 3.58 R
3003 4735 0.321564 CACCATCCACACGACCACAT 60.322 55.0 0.00 0.0 0.0 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.993307 TGCATCCTTGGCCTCATC 57.007 55.556 3.32 0.00 0.00 2.92
18 19 1.153107 TGCATCCTTGGCCTCATCG 60.153 57.895 3.32 0.00 0.00 3.84
19 20 1.153086 GCATCCTTGGCCTCATCGT 60.153 57.895 3.32 0.00 0.00 3.73
20 21 0.749454 GCATCCTTGGCCTCATCGTT 60.749 55.000 3.32 0.00 0.00 3.85
21 22 1.019673 CATCCTTGGCCTCATCGTTG 58.980 55.000 3.32 0.00 0.00 4.10
22 23 0.107017 ATCCTTGGCCTCATCGTTGG 60.107 55.000 3.32 0.00 0.00 3.77
23 24 1.198094 TCCTTGGCCTCATCGTTGGA 61.198 55.000 3.32 0.00 0.00 3.53
24 25 0.745845 CCTTGGCCTCATCGTTGGAG 60.746 60.000 3.32 0.00 0.00 3.86
25 26 0.250234 CTTGGCCTCATCGTTGGAGA 59.750 55.000 3.32 0.00 34.24 3.71
26 27 0.911769 TTGGCCTCATCGTTGGAGAT 59.088 50.000 3.32 0.00 34.24 2.75
27 28 0.465705 TGGCCTCATCGTTGGAGATC 59.534 55.000 3.32 0.00 34.24 2.75
28 29 0.250081 GGCCTCATCGTTGGAGATCC 60.250 60.000 0.00 0.00 34.24 3.36
29 30 0.465705 GCCTCATCGTTGGAGATCCA 59.534 55.000 0.00 0.00 45.94 3.41
43 44 6.513806 TGGAGATCCAAATGTACACAAATG 57.486 37.500 0.00 0.00 44.35 2.32
44 45 5.418524 TGGAGATCCAAATGTACACAAATGG 59.581 40.000 0.00 4.72 44.35 3.16
45 46 5.163519 GGAGATCCAAATGTACACAAATGGG 60.164 44.000 14.54 5.29 36.73 4.00
46 47 4.711355 AGATCCAAATGTACACAAATGGGG 59.289 41.667 14.54 4.44 36.73 4.96
47 48 4.119556 TCCAAATGTACACAAATGGGGA 57.880 40.909 14.54 6.29 36.73 4.81
48 49 3.829601 TCCAAATGTACACAAATGGGGAC 59.170 43.478 14.54 0.00 36.73 4.46
49 50 3.366883 CCAAATGTACACAAATGGGGACG 60.367 47.826 0.00 0.00 34.16 4.79
50 51 2.122783 ATGTACACAAATGGGGACGG 57.877 50.000 0.00 0.00 0.00 4.79
51 52 1.057471 TGTACACAAATGGGGACGGA 58.943 50.000 0.00 0.00 0.00 4.69
52 53 1.270947 TGTACACAAATGGGGACGGAC 60.271 52.381 0.00 0.00 0.00 4.79
53 54 0.325602 TACACAAATGGGGACGGACC 59.674 55.000 0.00 0.00 38.08 4.46
54 55 1.378762 CACAAATGGGGACGGACCT 59.621 57.895 0.00 0.00 38.98 3.85
55 56 0.251165 CACAAATGGGGACGGACCTT 60.251 55.000 0.00 0.00 38.98 3.50
56 57 1.003812 CACAAATGGGGACGGACCTTA 59.996 52.381 0.00 0.00 38.98 2.69
57 58 1.706305 ACAAATGGGGACGGACCTTAA 59.294 47.619 0.00 0.00 38.98 1.85
58 59 2.108601 ACAAATGGGGACGGACCTTAAA 59.891 45.455 0.00 0.00 38.98 1.52
59 60 3.158676 CAAATGGGGACGGACCTTAAAA 58.841 45.455 0.00 0.00 38.98 1.52
60 61 2.502142 ATGGGGACGGACCTTAAAAC 57.498 50.000 0.00 0.00 38.98 2.43
61 62 1.138568 TGGGGACGGACCTTAAAACA 58.861 50.000 0.00 0.00 38.98 2.83
62 63 1.493871 TGGGGACGGACCTTAAAACAA 59.506 47.619 0.00 0.00 38.98 2.83
63 64 2.156917 GGGGACGGACCTTAAAACAAG 58.843 52.381 0.00 0.00 38.98 3.16
64 65 2.487805 GGGGACGGACCTTAAAACAAGT 60.488 50.000 0.00 0.00 38.98 3.16
65 66 3.216800 GGGACGGACCTTAAAACAAGTT 58.783 45.455 0.00 0.00 38.98 2.66
66 67 3.004002 GGGACGGACCTTAAAACAAGTTG 59.996 47.826 0.00 0.00 38.98 3.16
67 68 3.004002 GGACGGACCTTAAAACAAGTTGG 59.996 47.826 7.96 0.00 35.41 3.77
68 69 2.953648 ACGGACCTTAAAACAAGTTGGG 59.046 45.455 7.96 0.00 0.00 4.12
69 70 2.953648 CGGACCTTAAAACAAGTTGGGT 59.046 45.455 7.96 3.33 0.00 4.51
70 71 3.004002 CGGACCTTAAAACAAGTTGGGTC 59.996 47.826 14.82 14.82 40.44 4.46
71 72 4.579454 GACCTTAAAACAAGTTGGGTCC 57.421 45.455 7.96 0.00 36.67 4.46
72 73 4.212716 GACCTTAAAACAAGTTGGGTCCT 58.787 43.478 7.96 0.00 36.67 3.85
73 74 5.379187 GACCTTAAAACAAGTTGGGTCCTA 58.621 41.667 7.96 0.00 36.67 2.94
74 75 5.768752 ACCTTAAAACAAGTTGGGTCCTAA 58.231 37.500 7.96 0.00 0.00 2.69
75 76 6.196434 ACCTTAAAACAAGTTGGGTCCTAAA 58.804 36.000 7.96 0.00 0.00 1.85
76 77 6.842280 ACCTTAAAACAAGTTGGGTCCTAAAT 59.158 34.615 7.96 0.00 0.00 1.40
77 78 7.151976 CCTTAAAACAAGTTGGGTCCTAAATG 58.848 38.462 7.96 0.00 0.00 2.32
78 79 4.600692 AAACAAGTTGGGTCCTAAATGC 57.399 40.909 7.96 0.00 0.00 3.56
79 80 2.525368 ACAAGTTGGGTCCTAAATGCC 58.475 47.619 7.96 0.00 0.00 4.40
80 81 2.158385 ACAAGTTGGGTCCTAAATGCCA 60.158 45.455 7.96 0.00 0.00 4.92
81 82 2.493278 CAAGTTGGGTCCTAAATGCCAG 59.507 50.000 0.00 0.00 0.00 4.85
82 83 0.817654 GTTGGGTCCTAAATGCCAGC 59.182 55.000 0.00 0.00 0.00 4.85
83 84 0.324275 TTGGGTCCTAAATGCCAGCC 60.324 55.000 0.00 0.00 0.00 4.85
84 85 1.214305 TGGGTCCTAAATGCCAGCCT 61.214 55.000 0.00 0.00 0.00 4.58
85 86 0.466372 GGGTCCTAAATGCCAGCCTC 60.466 60.000 0.00 0.00 0.00 4.70
86 87 0.548510 GGTCCTAAATGCCAGCCTCT 59.451 55.000 0.00 0.00 0.00 3.69
87 88 1.475930 GGTCCTAAATGCCAGCCTCTC 60.476 57.143 0.00 0.00 0.00 3.20
88 89 1.210478 GTCCTAAATGCCAGCCTCTCA 59.790 52.381 0.00 0.00 0.00 3.27
89 90 1.915489 TCCTAAATGCCAGCCTCTCAA 59.085 47.619 0.00 0.00 0.00 3.02
90 91 2.511218 TCCTAAATGCCAGCCTCTCAAT 59.489 45.455 0.00 0.00 0.00 2.57
91 92 3.716353 TCCTAAATGCCAGCCTCTCAATA 59.284 43.478 0.00 0.00 0.00 1.90
92 93 3.817647 CCTAAATGCCAGCCTCTCAATAC 59.182 47.826 0.00 0.00 0.00 1.89
93 94 3.370840 AAATGCCAGCCTCTCAATACA 57.629 42.857 0.00 0.00 0.00 2.29
94 95 3.589951 AATGCCAGCCTCTCAATACAT 57.410 42.857 0.00 0.00 0.00 2.29
95 96 4.712051 AATGCCAGCCTCTCAATACATA 57.288 40.909 0.00 0.00 0.00 2.29
96 97 4.712051 ATGCCAGCCTCTCAATACATAA 57.288 40.909 0.00 0.00 0.00 1.90
97 98 4.502105 TGCCAGCCTCTCAATACATAAA 57.498 40.909 0.00 0.00 0.00 1.40
98 99 4.199310 TGCCAGCCTCTCAATACATAAAC 58.801 43.478 0.00 0.00 0.00 2.01
99 100 4.080356 TGCCAGCCTCTCAATACATAAACT 60.080 41.667 0.00 0.00 0.00 2.66
100 101 4.274459 GCCAGCCTCTCAATACATAAACTG 59.726 45.833 0.00 0.00 0.00 3.16
101 102 5.674525 CCAGCCTCTCAATACATAAACTGA 58.325 41.667 0.00 0.00 0.00 3.41
102 103 6.115446 CCAGCCTCTCAATACATAAACTGAA 58.885 40.000 0.00 0.00 0.00 3.02
103 104 6.769822 CCAGCCTCTCAATACATAAACTGAAT 59.230 38.462 0.00 0.00 0.00 2.57
104 105 7.933577 CCAGCCTCTCAATACATAAACTGAATA 59.066 37.037 0.00 0.00 0.00 1.75
105 106 9.499479 CAGCCTCTCAATACATAAACTGAATAT 57.501 33.333 0.00 0.00 0.00 1.28
149 150 4.916983 TTTTTGATTCCGGGCTCATATG 57.083 40.909 0.00 0.00 0.00 1.78
150 151 1.896220 TTGATTCCGGGCTCATATGC 58.104 50.000 0.00 0.00 0.00 3.14
151 152 1.059098 TGATTCCGGGCTCATATGCT 58.941 50.000 0.00 0.00 0.00 3.79
152 153 1.002430 TGATTCCGGGCTCATATGCTC 59.998 52.381 0.00 0.00 0.00 4.26
153 154 1.277557 GATTCCGGGCTCATATGCTCT 59.722 52.381 0.00 0.00 0.00 4.09
154 155 0.681733 TTCCGGGCTCATATGCTCTC 59.318 55.000 0.00 0.00 0.00 3.20
155 156 1.080230 CCGGGCTCATATGCTCTCG 60.080 63.158 8.69 8.69 0.00 4.04
156 157 1.735920 CGGGCTCATATGCTCTCGC 60.736 63.158 0.00 0.00 0.00 5.03
167 168 2.741759 TGCTCTCGCATGAACAGTAA 57.258 45.000 0.00 0.00 42.25 2.24
168 169 3.038788 TGCTCTCGCATGAACAGTAAA 57.961 42.857 0.00 0.00 42.25 2.01
169 170 3.398406 TGCTCTCGCATGAACAGTAAAA 58.602 40.909 0.00 0.00 42.25 1.52
170 171 4.002982 TGCTCTCGCATGAACAGTAAAAT 58.997 39.130 0.00 0.00 42.25 1.82
171 172 4.093408 TGCTCTCGCATGAACAGTAAAATC 59.907 41.667 0.00 0.00 42.25 2.17
172 173 4.494855 GCTCTCGCATGAACAGTAAAATCC 60.495 45.833 0.00 0.00 35.78 3.01
173 174 4.574892 TCTCGCATGAACAGTAAAATCCA 58.425 39.130 0.00 0.00 0.00 3.41
174 175 5.000591 TCTCGCATGAACAGTAAAATCCAA 58.999 37.500 0.00 0.00 0.00 3.53
175 176 5.471797 TCTCGCATGAACAGTAAAATCCAAA 59.528 36.000 0.00 0.00 0.00 3.28
176 177 6.016693 TCTCGCATGAACAGTAAAATCCAAAA 60.017 34.615 0.00 0.00 0.00 2.44
177 178 6.507900 TCGCATGAACAGTAAAATCCAAAAA 58.492 32.000 0.00 0.00 0.00 1.94
238 239 5.872635 CATTGATGAATGTTCTAACTGCGT 58.127 37.500 0.00 0.00 35.19 5.24
239 240 4.926860 TGATGAATGTTCTAACTGCGTG 57.073 40.909 0.00 0.00 0.00 5.34
240 241 3.125146 TGATGAATGTTCTAACTGCGTGC 59.875 43.478 0.00 0.00 0.00 5.34
241 242 2.488952 TGAATGTTCTAACTGCGTGCA 58.511 42.857 0.00 0.00 0.00 4.57
242 243 2.875317 TGAATGTTCTAACTGCGTGCAA 59.125 40.909 0.00 0.00 0.00 4.08
243 244 3.313803 TGAATGTTCTAACTGCGTGCAAA 59.686 39.130 0.00 0.00 0.00 3.68
244 245 3.980646 ATGTTCTAACTGCGTGCAAAA 57.019 38.095 0.00 0.00 0.00 2.44
245 246 3.980646 TGTTCTAACTGCGTGCAAAAT 57.019 38.095 0.00 0.00 0.00 1.82
246 247 4.300189 TGTTCTAACTGCGTGCAAAATT 57.700 36.364 0.00 0.00 0.00 1.82
247 248 4.677584 TGTTCTAACTGCGTGCAAAATTT 58.322 34.783 0.00 0.00 0.00 1.82
248 249 4.737765 TGTTCTAACTGCGTGCAAAATTTC 59.262 37.500 0.00 0.00 0.00 2.17
249 250 4.560136 TCTAACTGCGTGCAAAATTTCA 57.440 36.364 0.00 0.00 0.00 2.69
250 251 4.926244 TCTAACTGCGTGCAAAATTTCAA 58.074 34.783 0.00 0.00 0.00 2.69
251 252 4.975502 TCTAACTGCGTGCAAAATTTCAAG 59.024 37.500 0.00 0.00 0.00 3.02
252 253 3.163630 ACTGCGTGCAAAATTTCAAGT 57.836 38.095 0.00 0.00 0.00 3.16
253 254 3.115554 ACTGCGTGCAAAATTTCAAGTC 58.884 40.909 0.00 0.00 0.00 3.01
254 255 2.115595 TGCGTGCAAAATTTCAAGTCG 58.884 42.857 0.00 0.00 0.00 4.18
255 256 2.223363 TGCGTGCAAAATTTCAAGTCGA 60.223 40.909 0.00 0.00 0.00 4.20
256 257 2.786578 GCGTGCAAAATTTCAAGTCGAA 59.213 40.909 0.00 0.00 0.00 3.71
273 274 2.346803 CGAAATGACATTCGTGGAGGT 58.653 47.619 0.05 0.00 45.32 3.85
274 275 2.348666 CGAAATGACATTCGTGGAGGTC 59.651 50.000 0.05 0.00 45.32 3.85
275 276 3.600388 GAAATGACATTCGTGGAGGTCT 58.400 45.455 0.05 0.00 0.00 3.85
276 277 4.676986 CGAAATGACATTCGTGGAGGTCTA 60.677 45.833 0.05 0.00 45.32 2.59
277 278 4.392921 AATGACATTCGTGGAGGTCTAG 57.607 45.455 0.00 0.00 0.00 2.43
278 279 2.100197 TGACATTCGTGGAGGTCTAGG 58.900 52.381 0.00 0.00 0.00 3.02
279 280 0.824759 ACATTCGTGGAGGTCTAGGC 59.175 55.000 0.00 0.00 0.00 3.93
280 281 0.824109 CATTCGTGGAGGTCTAGGCA 59.176 55.000 0.00 0.00 0.00 4.75
281 282 1.207089 CATTCGTGGAGGTCTAGGCAA 59.793 52.381 0.00 0.00 0.00 4.52
282 283 1.344065 TTCGTGGAGGTCTAGGCAAA 58.656 50.000 0.00 0.00 0.00 3.68
283 284 1.344065 TCGTGGAGGTCTAGGCAAAA 58.656 50.000 0.00 0.00 0.00 2.44
284 285 1.695242 TCGTGGAGGTCTAGGCAAAAA 59.305 47.619 0.00 0.00 0.00 1.94
285 286 2.304761 TCGTGGAGGTCTAGGCAAAAAT 59.695 45.455 0.00 0.00 0.00 1.82
286 287 3.081804 CGTGGAGGTCTAGGCAAAAATT 58.918 45.455 0.00 0.00 0.00 1.82
287 288 4.020039 TCGTGGAGGTCTAGGCAAAAATTA 60.020 41.667 0.00 0.00 0.00 1.40
288 289 4.881850 CGTGGAGGTCTAGGCAAAAATTAT 59.118 41.667 0.00 0.00 0.00 1.28
289 290 6.053005 CGTGGAGGTCTAGGCAAAAATTATA 58.947 40.000 0.00 0.00 0.00 0.98
290 291 6.540914 CGTGGAGGTCTAGGCAAAAATTATAA 59.459 38.462 0.00 0.00 0.00 0.98
291 292 7.066525 CGTGGAGGTCTAGGCAAAAATTATAAA 59.933 37.037 0.00 0.00 0.00 1.40
292 293 8.745590 GTGGAGGTCTAGGCAAAAATTATAAAA 58.254 33.333 0.00 0.00 0.00 1.52
293 294 9.487442 TGGAGGTCTAGGCAAAAATTATAAAAT 57.513 29.630 0.00 0.00 0.00 1.82
294 295 9.967346 GGAGGTCTAGGCAAAAATTATAAAATC 57.033 33.333 0.00 0.00 0.00 2.17
295 296 9.665264 GAGGTCTAGGCAAAAATTATAAAATCG 57.335 33.333 0.00 0.00 0.00 3.34
296 297 9.403583 AGGTCTAGGCAAAAATTATAAAATCGA 57.596 29.630 0.00 0.00 0.00 3.59
299 300 9.677567 TCTAGGCAAAAATTATAAAATCGATGC 57.322 29.630 0.00 0.00 0.00 3.91
300 301 9.683069 CTAGGCAAAAATTATAAAATCGATGCT 57.317 29.630 0.00 0.00 31.99 3.79
301 302 8.579682 AGGCAAAAATTATAAAATCGATGCTC 57.420 30.769 0.00 0.00 31.99 4.26
302 303 7.653311 AGGCAAAAATTATAAAATCGATGCTCC 59.347 33.333 0.00 0.00 31.99 4.70
303 304 7.437862 GGCAAAAATTATAAAATCGATGCTCCA 59.562 33.333 0.00 0.00 31.99 3.86
304 305 8.816144 GCAAAAATTATAAAATCGATGCTCCAA 58.184 29.630 0.00 0.00 0.00 3.53
309 310 7.928908 TTATAAAATCGATGCTCCAAAATGC 57.071 32.000 0.00 0.00 0.00 3.56
310 311 4.460948 AAAATCGATGCTCCAAAATGCT 57.539 36.364 0.00 0.00 0.00 3.79
311 312 4.460948 AAATCGATGCTCCAAAATGCTT 57.539 36.364 0.00 0.00 0.00 3.91
312 313 3.705043 ATCGATGCTCCAAAATGCTTC 57.295 42.857 0.00 0.00 0.00 3.86
313 314 1.745087 TCGATGCTCCAAAATGCTTCC 59.255 47.619 0.00 0.00 32.10 3.46
314 315 1.473677 CGATGCTCCAAAATGCTTCCA 59.526 47.619 0.00 0.00 32.10 3.53
315 316 2.094597 CGATGCTCCAAAATGCTTCCAA 60.095 45.455 0.00 0.00 32.10 3.53
316 317 2.818130 TGCTCCAAAATGCTTCCAAC 57.182 45.000 0.00 0.00 0.00 3.77
317 318 2.037901 TGCTCCAAAATGCTTCCAACA 58.962 42.857 0.00 0.00 0.00 3.33
318 319 2.433604 TGCTCCAAAATGCTTCCAACAA 59.566 40.909 0.00 0.00 0.00 2.83
319 320 3.071312 TGCTCCAAAATGCTTCCAACAAT 59.929 39.130 0.00 0.00 0.00 2.71
320 321 4.282957 TGCTCCAAAATGCTTCCAACAATA 59.717 37.500 0.00 0.00 0.00 1.90
321 322 4.866486 GCTCCAAAATGCTTCCAACAATAG 59.134 41.667 0.00 0.00 0.00 1.73
322 323 5.567423 GCTCCAAAATGCTTCCAACAATAGT 60.567 40.000 0.00 0.00 0.00 2.12
323 324 6.418057 TCCAAAATGCTTCCAACAATAGTT 57.582 33.333 0.00 0.00 38.88 2.24
324 325 6.825610 TCCAAAATGCTTCCAACAATAGTTT 58.174 32.000 0.00 0.00 35.28 2.66
325 326 7.278875 TCCAAAATGCTTCCAACAATAGTTTT 58.721 30.769 0.00 0.00 35.28 2.43
326 327 7.772757 TCCAAAATGCTTCCAACAATAGTTTTT 59.227 29.630 0.00 0.00 35.28 1.94
358 359 3.941704 AAAAATTTTTGGCCCAGACCA 57.058 38.095 15.25 0.00 38.16 4.02
359 360 2.928801 AAATTTTTGGCCCAGACCAC 57.071 45.000 0.00 0.00 40.19 4.16
360 361 1.055849 AATTTTTGGCCCAGACCACC 58.944 50.000 0.00 0.00 40.19 4.61
361 362 0.105246 ATTTTTGGCCCAGACCACCA 60.105 50.000 0.00 0.00 40.19 4.17
362 363 1.045911 TTTTTGGCCCAGACCACCAC 61.046 55.000 0.00 0.00 40.19 4.16
363 364 1.943730 TTTTGGCCCAGACCACCACT 61.944 55.000 0.00 0.00 40.19 4.00
364 365 1.063070 TTTGGCCCAGACCACCACTA 61.063 55.000 0.00 0.00 40.19 2.74
365 366 1.063070 TTGGCCCAGACCACCACTAA 61.063 55.000 0.00 0.00 40.19 2.24
366 367 0.844661 TGGCCCAGACCACCACTAAT 60.845 55.000 0.00 0.00 33.75 1.73
367 368 0.394352 GGCCCAGACCACCACTAATG 60.394 60.000 0.00 0.00 0.00 1.90
368 369 0.328258 GCCCAGACCACCACTAATGT 59.672 55.000 0.00 0.00 0.00 2.71
369 370 1.679032 GCCCAGACCACCACTAATGTC 60.679 57.143 0.00 0.00 0.00 3.06
370 371 1.628340 CCCAGACCACCACTAATGTCA 59.372 52.381 0.00 0.00 0.00 3.58
371 372 2.239654 CCCAGACCACCACTAATGTCAT 59.760 50.000 0.00 0.00 0.00 3.06
372 373 3.308402 CCCAGACCACCACTAATGTCATT 60.308 47.826 3.06 3.06 0.00 2.57
373 374 4.335416 CCAGACCACCACTAATGTCATTT 58.665 43.478 2.79 0.00 0.00 2.32
374 375 4.396166 CCAGACCACCACTAATGTCATTTC 59.604 45.833 2.79 0.00 0.00 2.17
375 376 5.003160 CAGACCACCACTAATGTCATTTCA 58.997 41.667 2.79 0.00 0.00 2.69
376 377 5.473162 CAGACCACCACTAATGTCATTTCAA 59.527 40.000 2.79 0.00 0.00 2.69
377 378 5.473504 AGACCACCACTAATGTCATTTCAAC 59.526 40.000 2.79 0.00 0.00 3.18
378 379 4.522789 ACCACCACTAATGTCATTTCAACC 59.477 41.667 2.79 0.00 0.00 3.77
379 380 4.766891 CCACCACTAATGTCATTTCAACCT 59.233 41.667 2.79 0.00 0.00 3.50
380 381 5.335897 CCACCACTAATGTCATTTCAACCTG 60.336 44.000 2.79 0.00 0.00 4.00
381 382 5.473162 CACCACTAATGTCATTTCAACCTGA 59.527 40.000 2.79 0.00 0.00 3.86
382 383 6.016360 CACCACTAATGTCATTTCAACCTGAA 60.016 38.462 2.79 0.00 34.03 3.02
395 396 7.712264 TTTCAACCTGAAATTTTGCATACAG 57.288 32.000 0.00 0.00 41.02 2.74
396 397 6.403866 TCAACCTGAAATTTTGCATACAGT 57.596 33.333 0.00 0.00 0.00 3.55
397 398 6.815089 TCAACCTGAAATTTTGCATACAGTT 58.185 32.000 0.00 0.00 0.00 3.16
398 399 7.946207 TCAACCTGAAATTTTGCATACAGTTA 58.054 30.769 0.00 0.00 0.00 2.24
399 400 8.081633 TCAACCTGAAATTTTGCATACAGTTAG 58.918 33.333 0.00 0.00 0.00 2.34
400 401 7.759489 ACCTGAAATTTTGCATACAGTTAGA 57.241 32.000 0.00 0.00 0.00 2.10
401 402 8.177119 ACCTGAAATTTTGCATACAGTTAGAA 57.823 30.769 0.00 0.00 0.00 2.10
402 403 8.637986 ACCTGAAATTTTGCATACAGTTAGAAA 58.362 29.630 0.00 0.00 0.00 2.52
403 404 9.474920 CCTGAAATTTTGCATACAGTTAGAAAA 57.525 29.630 0.00 0.00 0.00 2.29
482 483 4.822036 TTGGATTTTACTGTTCACACGG 57.178 40.909 0.00 0.00 35.09 4.94
483 484 3.142951 TGGATTTTACTGTTCACACGGG 58.857 45.455 0.00 0.00 32.89 5.28
484 485 3.181453 TGGATTTTACTGTTCACACGGGA 60.181 43.478 0.00 0.00 32.89 5.14
485 486 3.435671 GGATTTTACTGTTCACACGGGAG 59.564 47.826 0.00 0.00 32.89 4.30
487 488 4.669206 TTTTACTGTTCACACGGGAGTA 57.331 40.909 0.00 0.00 44.67 2.59
488 489 4.877378 TTTACTGTTCACACGGGAGTAT 57.123 40.909 0.00 0.00 44.67 2.12
489 490 5.981088 TTTACTGTTCACACGGGAGTATA 57.019 39.130 0.00 0.00 44.67 1.47
490 491 6.534475 TTTACTGTTCACACGGGAGTATAT 57.466 37.500 0.00 0.00 44.67 0.86
491 492 4.386867 ACTGTTCACACGGGAGTATATG 57.613 45.455 0.00 0.00 44.67 1.78
492 493 4.021229 ACTGTTCACACGGGAGTATATGA 58.979 43.478 0.00 0.00 44.67 2.15
493 494 4.098044 ACTGTTCACACGGGAGTATATGAG 59.902 45.833 0.00 0.00 44.67 2.90
494 495 3.181479 TGTTCACACGGGAGTATATGAGC 60.181 47.826 0.00 0.00 44.67 4.26
495 496 2.945456 TCACACGGGAGTATATGAGCT 58.055 47.619 0.00 0.00 44.67 4.09
496 497 2.885266 TCACACGGGAGTATATGAGCTC 59.115 50.000 6.82 6.82 44.67 4.09
497 498 1.880675 ACACGGGAGTATATGAGCTCG 59.119 52.381 9.64 0.00 44.67 5.03
498 499 1.200252 CACGGGAGTATATGAGCTCGG 59.800 57.143 9.64 0.00 44.67 4.63
499 500 1.073444 ACGGGAGTATATGAGCTCGGA 59.927 52.381 9.64 0.00 44.60 4.55
500 501 2.291024 ACGGGAGTATATGAGCTCGGAT 60.291 50.000 9.64 7.31 44.60 4.18
501 502 2.356382 CGGGAGTATATGAGCTCGGATC 59.644 54.545 9.64 1.21 32.83 3.36
502 503 3.357203 GGGAGTATATGAGCTCGGATCA 58.643 50.000 9.64 0.00 32.83 2.92
503 504 3.764434 GGGAGTATATGAGCTCGGATCAA 59.236 47.826 9.64 0.00 32.83 2.57
504 505 4.220821 GGGAGTATATGAGCTCGGATCAAA 59.779 45.833 9.64 0.00 32.83 2.69
505 506 5.105146 GGGAGTATATGAGCTCGGATCAAAT 60.105 44.000 9.64 0.00 32.83 2.32
506 507 6.096987 GGGAGTATATGAGCTCGGATCAAATA 59.903 42.308 9.64 0.00 32.83 1.40
507 508 6.975772 GGAGTATATGAGCTCGGATCAAATAC 59.024 42.308 9.64 8.54 32.83 1.89
508 509 7.147983 GGAGTATATGAGCTCGGATCAAATACT 60.148 40.741 9.64 12.57 32.83 2.12
509 510 7.767261 AGTATATGAGCTCGGATCAAATACTC 58.233 38.462 9.64 0.00 0.00 2.59
510 511 3.735237 TGAGCTCGGATCAAATACTCC 57.265 47.619 9.64 0.00 0.00 3.85
511 512 3.031013 TGAGCTCGGATCAAATACTCCA 58.969 45.455 9.64 0.00 0.00 3.86
512 513 3.643320 TGAGCTCGGATCAAATACTCCAT 59.357 43.478 9.64 0.00 0.00 3.41
513 514 3.993081 GAGCTCGGATCAAATACTCCATG 59.007 47.826 0.00 0.00 0.00 3.66
514 515 3.389329 AGCTCGGATCAAATACTCCATGT 59.611 43.478 0.00 0.00 0.00 3.21
515 516 3.743396 GCTCGGATCAAATACTCCATGTC 59.257 47.826 0.00 0.00 0.00 3.06
516 517 4.502259 GCTCGGATCAAATACTCCATGTCT 60.502 45.833 0.00 0.00 0.00 3.41
517 518 5.605534 CTCGGATCAAATACTCCATGTCTT 58.394 41.667 0.00 0.00 0.00 3.01
518 519 6.724893 TCGGATCAAATACTCCATGTCTTA 57.275 37.500 0.00 0.00 0.00 2.10
519 520 6.513180 TCGGATCAAATACTCCATGTCTTAC 58.487 40.000 0.00 0.00 0.00 2.34
520 521 6.097696 TCGGATCAAATACTCCATGTCTTACA 59.902 38.462 0.00 0.00 0.00 2.41
521 522 6.931281 CGGATCAAATACTCCATGTCTTACAT 59.069 38.462 0.00 0.00 39.91 2.29
522 523 8.088365 CGGATCAAATACTCCATGTCTTACATA 58.912 37.037 0.00 0.00 36.53 2.29
523 524 9.209175 GGATCAAATACTCCATGTCTTACATAC 57.791 37.037 0.00 0.00 36.53 2.39
524 525 8.818141 ATCAAATACTCCATGTCTTACATACG 57.182 34.615 0.00 0.00 36.53 3.06
525 526 7.207383 TCAAATACTCCATGTCTTACATACGG 58.793 38.462 0.00 0.00 36.53 4.02
526 527 5.723672 ATACTCCATGTCTTACATACGGG 57.276 43.478 0.00 0.00 36.53 5.28
527 528 3.371965 ACTCCATGTCTTACATACGGGT 58.628 45.455 0.00 0.00 36.53 5.28
528 529 4.539726 ACTCCATGTCTTACATACGGGTA 58.460 43.478 0.00 0.00 36.53 3.69
529 530 5.145564 ACTCCATGTCTTACATACGGGTAT 58.854 41.667 0.00 0.00 36.53 2.73
530 531 5.010719 ACTCCATGTCTTACATACGGGTATG 59.989 44.000 15.41 15.41 46.24 2.39
566 567 6.072838 GGGTTGTACTTTCTAACAAGTTAGGC 60.073 42.308 17.29 5.08 42.03 3.93
570 571 3.396611 ACTTTCTAACAAGTTAGGCCCCA 59.603 43.478 17.29 0.00 42.03 4.96
576 577 3.577805 ACAAGTTAGGCCCCATATGTC 57.422 47.619 0.00 0.00 0.00 3.06
577 578 2.849943 ACAAGTTAGGCCCCATATGTCA 59.150 45.455 0.00 0.00 0.00 3.58
580 581 2.174854 AGTTAGGCCCCATATGTCAACC 59.825 50.000 0.00 0.00 0.00 3.77
584 585 2.044353 AGGCCCCATATGTCAACCTTTT 59.956 45.455 0.00 0.00 0.00 2.27
585 586 2.430694 GGCCCCATATGTCAACCTTTTC 59.569 50.000 1.24 0.00 0.00 2.29
595 596 4.653868 TGTCAACCTTTTCGGCCTTATAA 58.346 39.130 0.00 0.00 35.61 0.98
596 597 4.456566 TGTCAACCTTTTCGGCCTTATAAC 59.543 41.667 0.00 0.00 35.61 1.89
597 598 4.456566 GTCAACCTTTTCGGCCTTATAACA 59.543 41.667 0.00 0.00 35.61 2.41
598 599 5.124936 GTCAACCTTTTCGGCCTTATAACAT 59.875 40.000 0.00 0.00 35.61 2.71
599 600 6.316890 GTCAACCTTTTCGGCCTTATAACATA 59.683 38.462 0.00 0.00 35.61 2.29
600 601 6.316890 TCAACCTTTTCGGCCTTATAACATAC 59.683 38.462 0.00 0.00 35.61 2.39
601 602 5.997843 ACCTTTTCGGCCTTATAACATACT 58.002 37.500 0.00 0.00 35.61 2.12
608 2326 7.822161 TCGGCCTTATAACATACTTACTGTA 57.178 36.000 0.00 0.00 35.37 2.74
615 2333 8.867112 TTATAACATACTTACTGTACAGCTGC 57.133 34.615 22.90 0.00 33.45 5.25
625 2343 1.009829 GTACAGCTGCTCCATTTCGG 58.990 55.000 15.27 0.00 0.00 4.30
699 2418 2.275547 CTTTCATCCAAGCGCCAGCC 62.276 60.000 2.29 0.00 46.67 4.85
902 2629 2.892425 CCCTGGAATCTGCGACGC 60.892 66.667 14.19 14.19 0.00 5.19
981 2708 1.812922 CTGAAGCTGGCGCGATTCT 60.813 57.895 12.10 0.00 42.32 2.40
1014 2741 0.179004 TCGCCATGAACAACCACCTT 60.179 50.000 0.00 0.00 0.00 3.50
1126 2853 1.605710 GGCATGTCCAAGGATCATTCG 59.394 52.381 0.00 0.00 34.01 3.34
1147 2874 1.819632 GCATCGGATCGGGTTGCTT 60.820 57.895 16.43 0.00 0.00 3.91
1233 2963 0.335019 TGGATGAGGAGGAGGACGAA 59.665 55.000 0.00 0.00 0.00 3.85
1272 3002 0.914417 AAATGGAGAGGAGGCGGGAA 60.914 55.000 0.00 0.00 0.00 3.97
1320 3050 1.518572 GTACCTCCATGTCACGCGG 60.519 63.158 12.47 0.00 0.00 6.46
1512 3242 1.094785 CCCTGGTGCGGTTATTTCAG 58.905 55.000 0.00 0.00 0.00 3.02
1860 3590 3.238597 GAAGATCCTGGAGTGGCTAGAT 58.761 50.000 1.52 0.00 0.00 1.98
2578 4308 0.251354 GATCAAGCTGGCTCCACAGA 59.749 55.000 0.00 0.00 40.97 3.41
2781 4511 2.359214 GGCTTTAAGCACAATCCTAGCC 59.641 50.000 19.10 0.00 44.75 3.93
2853 4583 5.077564 GGACCTGAAGTTTGGGAAAACTAT 58.922 41.667 4.40 0.00 41.76 2.12
3003 4735 5.181009 CACATCAGCTGTCCTCTTTCATAA 58.819 41.667 14.67 0.00 35.29 1.90
3059 4791 3.142174 AGGAACTGACTTTAGCTTGTGC 58.858 45.455 0.00 0.00 37.18 4.57
3060 4792 3.181450 AGGAACTGACTTTAGCTTGTGCT 60.181 43.478 0.00 0.00 46.42 4.40
3077 4809 2.571548 CTGGTGATTGTTCCAGGCC 58.428 57.895 0.00 0.00 45.11 5.19
3078 4810 0.251297 CTGGTGATTGTTCCAGGCCA 60.251 55.000 5.01 0.00 45.11 5.36
3093 4825 3.193479 CCAGGCCAAAGATTCAGTAAACC 59.807 47.826 5.01 0.00 0.00 3.27
3096 4828 4.706962 AGGCCAAAGATTCAGTAAACCATC 59.293 41.667 5.01 0.00 0.00 3.51
3115 4847 2.151202 TCGGACCATGTTTTTGAGAGC 58.849 47.619 0.00 0.00 0.00 4.09
3215 4949 6.151648 TGAATCTATTTCACTTTTCCTGCCTG 59.848 38.462 0.00 0.00 39.44 4.85
3217 4951 1.774110 TTTCACTTTTCCTGCCTGCA 58.226 45.000 0.00 0.00 0.00 4.41
3279 5037 2.124277 ACTTCCGTCCCAAATTAGCC 57.876 50.000 0.00 0.00 0.00 3.93
3335 5093 7.870588 AACACTAAGACAACTAATTCGAGAC 57.129 36.000 0.00 0.00 0.00 3.36
3385 5143 7.487822 TTGTTATATCTTTGGAAATGGCCAA 57.512 32.000 10.96 0.00 45.77 4.52
3419 5177 2.403252 GCTAGTGGCATGTAACTGGT 57.597 50.000 11.37 0.00 41.35 4.00
3420 5178 2.711542 GCTAGTGGCATGTAACTGGTT 58.288 47.619 11.37 0.00 41.35 3.67
3421 5179 2.678336 GCTAGTGGCATGTAACTGGTTC 59.322 50.000 11.37 0.00 41.35 3.62
3422 5180 2.949177 AGTGGCATGTAACTGGTTCA 57.051 45.000 0.00 0.00 0.00 3.18
3423 5181 3.222173 AGTGGCATGTAACTGGTTCAA 57.778 42.857 0.00 0.00 0.00 2.69
3424 5182 3.149196 AGTGGCATGTAACTGGTTCAAG 58.851 45.455 0.00 0.00 0.00 3.02
3425 5183 2.228822 GTGGCATGTAACTGGTTCAAGG 59.771 50.000 0.00 0.00 0.00 3.61
3426 5184 2.158534 TGGCATGTAACTGGTTCAAGGT 60.159 45.455 0.00 0.00 0.00 3.50
3437 5195 4.402474 ACTGGTTCAAGGTGAAGAAAAAGG 59.598 41.667 0.00 0.00 37.00 3.11
3440 5198 5.105513 TGGTTCAAGGTGAAGAAAAAGGTTC 60.106 40.000 0.00 0.00 37.00 3.62
3449 5207 3.355626 AGAAAAAGGTTCGCTGCTTTC 57.644 42.857 0.00 0.00 0.00 2.62
3468 5226 4.647424 TTCAGTTTGTTTCGGATTTGCT 57.353 36.364 0.00 0.00 0.00 3.91
3476 5234 3.243035 TGTTTCGGATTTGCTGTCAACAG 60.243 43.478 5.77 5.77 46.40 3.16
3480 5238 3.436704 TCGGATTTGCTGTCAACAGATTC 59.563 43.478 14.20 4.43 46.59 2.52
3500 5258 8.143193 CAGATTCTTGTATAGAGAGATGCTGTT 58.857 37.037 0.00 0.00 33.51 3.16
3503 5261 9.757227 ATTCTTGTATAGAGAGATGCTGTTAAC 57.243 33.333 0.00 0.00 33.51 2.01
3505 5263 8.918116 TCTTGTATAGAGAGATGCTGTTAACAT 58.082 33.333 9.13 0.00 0.00 2.71
3523 5281 5.736951 AACATAATTTTGGTGCTAGGCAA 57.263 34.783 0.89 0.00 41.47 4.52
3552 5310 6.933521 AGCAGTGATCATGTATACCTCATTTC 59.066 38.462 0.00 0.00 0.00 2.17
3567 5325 3.885297 CTCATTTCCATCACATGTACCCC 59.115 47.826 0.00 0.00 0.00 4.95
3568 5326 2.411628 TTTCCATCACATGTACCCCG 57.588 50.000 0.00 0.00 0.00 5.73
3569 5327 0.544223 TTCCATCACATGTACCCCGG 59.456 55.000 0.00 0.00 0.00 5.73
3588 5348 4.129380 CCGGCACTGAAAGATGATGAATA 58.871 43.478 0.00 0.00 37.43 1.75
3590 5350 5.277683 CCGGCACTGAAAGATGATGAATAAG 60.278 44.000 0.00 0.00 37.43 1.73
3595 5355 8.239314 GCACTGAAAGATGATGAATAAGTTTCA 58.761 33.333 0.00 0.00 37.43 2.69
3604 5364 9.322776 GATGATGAATAAGTTTCATTGATACGC 57.677 33.333 2.64 0.00 39.08 4.42
3605 5365 8.207521 TGATGAATAAGTTTCATTGATACGCA 57.792 30.769 2.64 0.00 39.08 5.24
3606 5366 8.672815 TGATGAATAAGTTTCATTGATACGCAA 58.327 29.630 2.64 0.00 39.08 4.85
3607 5367 9.502145 GATGAATAAGTTTCATTGATACGCAAA 57.498 29.630 2.64 0.00 40.48 3.68
3645 5405 8.318167 GGTTTTGTTTTTCTTGTAGAATTCACG 58.682 33.333 8.44 0.00 33.67 4.35
3652 5412 2.357327 TGTAGAATTCACGGTGGTCG 57.643 50.000 8.44 0.00 45.88 4.79
3664 5424 3.398954 CGGTGGTCGTATTTTTGGATG 57.601 47.619 0.00 0.00 0.00 3.51
3675 5435 7.964011 GTCGTATTTTTGGATGGATTTTTACGA 59.036 33.333 0.00 0.00 36.39 3.43
3677 5437 9.296400 CGTATTTTTGGATGGATTTTTACGATT 57.704 29.630 0.00 0.00 32.70 3.34
3690 5450 5.690997 TTTTACGATTGCACCATGTTGTA 57.309 34.783 0.00 0.00 0.00 2.41
3691 5451 4.671880 TTACGATTGCACCATGTTGTAC 57.328 40.909 0.00 0.00 0.00 2.90
3692 5452 2.499197 ACGATTGCACCATGTTGTACA 58.501 42.857 0.00 0.00 0.00 2.90
3712 5472 4.729595 ACAACAACGTGTCTTTCTTTTCC 58.270 39.130 0.00 0.00 0.00 3.13
3714 5474 2.223180 ACAACGTGTCTTTCTTTTCCGC 60.223 45.455 0.00 0.00 0.00 5.54
3747 5511 8.996651 AAATACTCTGTTCCAAAATATAGGGG 57.003 34.615 0.00 0.00 0.00 4.79
3751 5515 4.542525 TCTGTTCCAAAATATAGGGGGTGT 59.457 41.667 0.00 0.00 0.00 4.16
3849 5644 5.629079 ACGTATCGCTAGATTCATCATGA 57.371 39.130 0.00 0.00 38.26 3.07
3891 5686 9.921637 TTTGTTTATTTGGTATTGGAGATGTTC 57.078 29.630 0.00 0.00 0.00 3.18
3892 5687 8.642935 TGTTTATTTGGTATTGGAGATGTTCA 57.357 30.769 0.00 0.00 0.00 3.18
3893 5688 8.519526 TGTTTATTTGGTATTGGAGATGTTCAC 58.480 33.333 0.00 0.00 0.00 3.18
3894 5689 8.519526 GTTTATTTGGTATTGGAGATGTTCACA 58.480 33.333 0.00 0.00 0.00 3.58
3895 5690 8.821686 TTATTTGGTATTGGAGATGTTCACAT 57.178 30.769 0.00 0.00 39.70 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.153107 CGATGAGGCCAAGGATGCA 60.153 57.895 5.01 0.00 0.00 3.96
1 2 0.749454 AACGATGAGGCCAAGGATGC 60.749 55.000 5.01 0.00 0.00 3.91
2 3 1.019673 CAACGATGAGGCCAAGGATG 58.980 55.000 5.01 0.00 0.00 3.51
3 4 0.107017 CCAACGATGAGGCCAAGGAT 60.107 55.000 5.01 0.00 0.00 3.24
4 5 1.198094 TCCAACGATGAGGCCAAGGA 61.198 55.000 5.01 0.00 0.00 3.36
5 6 0.745845 CTCCAACGATGAGGCCAAGG 60.746 60.000 5.01 0.00 0.00 3.61
6 7 0.250234 TCTCCAACGATGAGGCCAAG 59.750 55.000 5.01 0.00 0.00 3.61
7 8 0.911769 ATCTCCAACGATGAGGCCAA 59.088 50.000 5.01 0.00 0.00 4.52
8 9 0.465705 GATCTCCAACGATGAGGCCA 59.534 55.000 5.01 0.00 0.00 5.36
9 10 0.250081 GGATCTCCAACGATGAGGCC 60.250 60.000 0.00 0.00 35.64 5.19
10 11 0.465705 TGGATCTCCAACGATGAGGC 59.534 55.000 0.00 0.00 44.35 4.70
20 21 5.418524 CCATTTGTGTACATTTGGATCTCCA 59.581 40.000 0.00 0.00 45.94 3.86
21 22 5.163519 CCCATTTGTGTACATTTGGATCTCC 60.164 44.000 14.39 0.00 32.88 3.71
22 23 5.163519 CCCCATTTGTGTACATTTGGATCTC 60.164 44.000 14.39 0.00 32.88 2.75
23 24 4.711355 CCCCATTTGTGTACATTTGGATCT 59.289 41.667 14.39 0.00 32.88 2.75
24 25 4.709397 TCCCCATTTGTGTACATTTGGATC 59.291 41.667 14.39 0.00 32.88 3.36
25 26 4.466015 GTCCCCATTTGTGTACATTTGGAT 59.534 41.667 14.39 0.00 32.88 3.41
26 27 3.829601 GTCCCCATTTGTGTACATTTGGA 59.170 43.478 14.39 5.81 32.88 3.53
27 28 3.366883 CGTCCCCATTTGTGTACATTTGG 60.367 47.826 0.00 4.22 0.00 3.28
28 29 3.366883 CCGTCCCCATTTGTGTACATTTG 60.367 47.826 0.00 0.00 0.00 2.32
29 30 2.823154 CCGTCCCCATTTGTGTACATTT 59.177 45.455 0.00 0.00 0.00 2.32
30 31 2.040545 TCCGTCCCCATTTGTGTACATT 59.959 45.455 0.00 0.00 0.00 2.71
31 32 1.631388 TCCGTCCCCATTTGTGTACAT 59.369 47.619 0.00 0.00 0.00 2.29
32 33 1.057471 TCCGTCCCCATTTGTGTACA 58.943 50.000 0.00 0.00 0.00 2.90
33 34 1.445871 GTCCGTCCCCATTTGTGTAC 58.554 55.000 0.00 0.00 0.00 2.90
34 35 0.325602 GGTCCGTCCCCATTTGTGTA 59.674 55.000 0.00 0.00 0.00 2.90
35 36 1.074248 GGTCCGTCCCCATTTGTGT 59.926 57.895 0.00 0.00 0.00 3.72
36 37 0.251165 AAGGTCCGTCCCCATTTGTG 60.251 55.000 0.00 0.00 36.75 3.33
37 38 1.364269 TAAGGTCCGTCCCCATTTGT 58.636 50.000 0.00 0.00 36.75 2.83
38 39 2.500392 TTAAGGTCCGTCCCCATTTG 57.500 50.000 0.00 0.00 36.75 2.32
39 40 3.159472 GTTTTAAGGTCCGTCCCCATTT 58.841 45.455 0.00 0.00 36.75 2.32
40 41 2.108601 TGTTTTAAGGTCCGTCCCCATT 59.891 45.455 0.00 0.00 36.75 3.16
41 42 1.706305 TGTTTTAAGGTCCGTCCCCAT 59.294 47.619 0.00 0.00 36.75 4.00
42 43 1.138568 TGTTTTAAGGTCCGTCCCCA 58.861 50.000 0.00 0.00 36.75 4.96
43 44 2.156917 CTTGTTTTAAGGTCCGTCCCC 58.843 52.381 0.00 0.00 36.75 4.81
44 45 2.854963 ACTTGTTTTAAGGTCCGTCCC 58.145 47.619 0.00 0.00 36.75 4.46
45 46 3.004002 CCAACTTGTTTTAAGGTCCGTCC 59.996 47.826 0.00 0.00 0.00 4.79
46 47 3.004002 CCCAACTTGTTTTAAGGTCCGTC 59.996 47.826 0.00 0.00 0.00 4.79
47 48 2.953648 CCCAACTTGTTTTAAGGTCCGT 59.046 45.455 0.00 0.00 0.00 4.69
48 49 2.953648 ACCCAACTTGTTTTAAGGTCCG 59.046 45.455 0.00 0.00 0.00 4.79
49 50 4.579454 GACCCAACTTGTTTTAAGGTCC 57.421 45.455 0.00 0.00 37.03 4.46
50 51 4.212716 AGGACCCAACTTGTTTTAAGGTC 58.787 43.478 0.00 0.00 41.27 3.85
51 52 4.259933 AGGACCCAACTTGTTTTAAGGT 57.740 40.909 0.00 0.00 0.00 3.50
52 53 6.718522 TTTAGGACCCAACTTGTTTTAAGG 57.281 37.500 0.00 0.00 0.00 2.69
53 54 6.645003 GCATTTAGGACCCAACTTGTTTTAAG 59.355 38.462 0.00 0.00 0.00 1.85
54 55 6.463190 GGCATTTAGGACCCAACTTGTTTTAA 60.463 38.462 0.00 0.00 0.00 1.52
55 56 5.011227 GGCATTTAGGACCCAACTTGTTTTA 59.989 40.000 0.00 0.00 0.00 1.52
56 57 4.202315 GGCATTTAGGACCCAACTTGTTTT 60.202 41.667 0.00 0.00 0.00 2.43
57 58 3.323691 GGCATTTAGGACCCAACTTGTTT 59.676 43.478 0.00 0.00 0.00 2.83
58 59 2.897326 GGCATTTAGGACCCAACTTGTT 59.103 45.455 0.00 0.00 0.00 2.83
59 60 2.158385 TGGCATTTAGGACCCAACTTGT 60.158 45.455 0.00 0.00 0.00 3.16
60 61 2.493278 CTGGCATTTAGGACCCAACTTG 59.507 50.000 0.00 0.00 0.00 3.16
61 62 2.807676 CTGGCATTTAGGACCCAACTT 58.192 47.619 0.00 0.00 0.00 2.66
62 63 1.616994 GCTGGCATTTAGGACCCAACT 60.617 52.381 0.00 0.00 0.00 3.16
63 64 0.817654 GCTGGCATTTAGGACCCAAC 59.182 55.000 0.00 0.00 0.00 3.77
64 65 0.324275 GGCTGGCATTTAGGACCCAA 60.324 55.000 0.00 0.00 0.00 4.12
65 66 1.214305 AGGCTGGCATTTAGGACCCA 61.214 55.000 3.38 0.00 0.00 4.51
66 67 0.466372 GAGGCTGGCATTTAGGACCC 60.466 60.000 3.38 0.00 0.00 4.46
67 68 0.548510 AGAGGCTGGCATTTAGGACC 59.451 55.000 3.38 0.00 0.00 4.46
68 69 1.210478 TGAGAGGCTGGCATTTAGGAC 59.790 52.381 3.38 0.00 0.00 3.85
69 70 1.583556 TGAGAGGCTGGCATTTAGGA 58.416 50.000 3.38 0.00 0.00 2.94
70 71 2.425143 TTGAGAGGCTGGCATTTAGG 57.575 50.000 3.38 0.00 0.00 2.69
71 72 4.454678 TGTATTGAGAGGCTGGCATTTAG 58.545 43.478 3.38 0.00 0.00 1.85
72 73 4.502105 TGTATTGAGAGGCTGGCATTTA 57.498 40.909 3.38 0.00 0.00 1.40
73 74 3.370840 TGTATTGAGAGGCTGGCATTT 57.629 42.857 3.38 0.00 0.00 2.32
74 75 3.589951 ATGTATTGAGAGGCTGGCATT 57.410 42.857 3.38 0.00 0.00 3.56
75 76 4.712051 TTATGTATTGAGAGGCTGGCAT 57.288 40.909 3.38 0.00 0.00 4.40
76 77 4.080356 AGTTTATGTATTGAGAGGCTGGCA 60.080 41.667 3.38 0.00 0.00 4.92
77 78 4.274459 CAGTTTATGTATTGAGAGGCTGGC 59.726 45.833 0.00 0.00 0.00 4.85
78 79 5.674525 TCAGTTTATGTATTGAGAGGCTGG 58.325 41.667 0.00 0.00 0.00 4.85
79 80 7.798596 ATTCAGTTTATGTATTGAGAGGCTG 57.201 36.000 0.00 0.00 0.00 4.85
128 129 3.068024 GCATATGAGCCCGGAATCAAAAA 59.932 43.478 0.73 0.00 0.00 1.94
129 130 2.622942 GCATATGAGCCCGGAATCAAAA 59.377 45.455 0.73 0.00 0.00 2.44
130 131 2.158623 AGCATATGAGCCCGGAATCAAA 60.159 45.455 0.73 0.00 34.23 2.69
131 132 1.421268 AGCATATGAGCCCGGAATCAA 59.579 47.619 0.73 0.00 34.23 2.57
132 133 1.002430 GAGCATATGAGCCCGGAATCA 59.998 52.381 0.73 7.08 34.23 2.57
133 134 1.277557 AGAGCATATGAGCCCGGAATC 59.722 52.381 0.73 0.00 34.23 2.52
134 135 1.277557 GAGAGCATATGAGCCCGGAAT 59.722 52.381 0.73 0.00 34.23 3.01
135 136 0.681733 GAGAGCATATGAGCCCGGAA 59.318 55.000 0.73 0.00 34.23 4.30
136 137 1.527433 CGAGAGCATATGAGCCCGGA 61.527 60.000 0.73 0.00 34.23 5.14
137 138 1.080230 CGAGAGCATATGAGCCCGG 60.080 63.158 6.97 0.00 34.23 5.73
138 139 4.567435 CGAGAGCATATGAGCCCG 57.433 61.111 6.97 0.35 34.23 6.13
150 151 4.631377 TGGATTTTACTGTTCATGCGAGAG 59.369 41.667 0.00 0.00 0.00 3.20
151 152 4.574892 TGGATTTTACTGTTCATGCGAGA 58.425 39.130 0.00 0.00 0.00 4.04
152 153 4.944962 TGGATTTTACTGTTCATGCGAG 57.055 40.909 0.00 0.00 0.00 5.03
153 154 5.697473 TTTGGATTTTACTGTTCATGCGA 57.303 34.783 0.00 0.00 0.00 5.10
154 155 6.761731 TTTTTGGATTTTACTGTTCATGCG 57.238 33.333 0.00 0.00 0.00 4.73
215 216 5.735892 CACGCAGTTAGAACATTCATCAATG 59.264 40.000 0.00 0.00 41.61 2.82
216 217 5.674569 GCACGCAGTTAGAACATTCATCAAT 60.675 40.000 0.00 0.00 41.61 2.57
217 218 4.378356 GCACGCAGTTAGAACATTCATCAA 60.378 41.667 0.00 0.00 41.61 2.57
218 219 3.125146 GCACGCAGTTAGAACATTCATCA 59.875 43.478 0.00 0.00 41.61 3.07
219 220 3.125146 TGCACGCAGTTAGAACATTCATC 59.875 43.478 0.00 0.00 41.61 2.92
220 221 3.073678 TGCACGCAGTTAGAACATTCAT 58.926 40.909 0.00 0.00 41.61 2.57
221 222 2.488952 TGCACGCAGTTAGAACATTCA 58.511 42.857 0.00 0.00 41.61 2.57
222 223 3.536158 TTGCACGCAGTTAGAACATTC 57.464 42.857 0.00 0.00 41.61 2.67
223 224 3.980646 TTTGCACGCAGTTAGAACATT 57.019 38.095 0.00 0.00 41.61 2.71
224 225 3.980646 TTTTGCACGCAGTTAGAACAT 57.019 38.095 0.00 0.00 41.61 2.71
225 226 3.980646 ATTTTGCACGCAGTTAGAACA 57.019 38.095 0.00 0.00 41.61 3.18
226 227 4.737765 TGAAATTTTGCACGCAGTTAGAAC 59.262 37.500 0.00 0.00 41.61 3.01
227 228 4.926244 TGAAATTTTGCACGCAGTTAGAA 58.074 34.783 0.00 0.00 41.61 2.10
228 229 4.560136 TGAAATTTTGCACGCAGTTAGA 57.440 36.364 0.00 0.00 41.61 2.10
229 230 4.739716 ACTTGAAATTTTGCACGCAGTTAG 59.260 37.500 0.00 0.00 41.61 2.34
230 231 4.677584 ACTTGAAATTTTGCACGCAGTTA 58.322 34.783 0.00 0.00 41.61 2.24
231 232 3.520569 ACTTGAAATTTTGCACGCAGTT 58.479 36.364 0.00 0.00 41.61 3.16
232 233 7.877950 TTCGACTTGAAATTTTGCACGCAGT 62.878 40.000 0.00 0.00 35.03 4.40
233 234 2.151736 CGACTTGAAATTTTGCACGCAG 59.848 45.455 0.00 0.00 0.00 5.18
234 235 2.115595 CGACTTGAAATTTTGCACGCA 58.884 42.857 0.00 0.00 0.00 5.24
235 236 2.380660 TCGACTTGAAATTTTGCACGC 58.619 42.857 0.00 0.00 0.00 5.34
254 255 3.600388 AGACCTCCACGAATGTCATTTC 58.400 45.455 0.00 0.00 0.00 2.17
255 256 3.703001 AGACCTCCACGAATGTCATTT 57.297 42.857 0.00 0.00 0.00 2.32
256 257 3.133003 CCTAGACCTCCACGAATGTCATT 59.867 47.826 0.00 0.00 0.00 2.57
257 258 2.695666 CCTAGACCTCCACGAATGTCAT 59.304 50.000 0.00 0.00 0.00 3.06
258 259 2.100197 CCTAGACCTCCACGAATGTCA 58.900 52.381 0.00 0.00 0.00 3.58
259 260 1.202428 GCCTAGACCTCCACGAATGTC 60.202 57.143 0.00 0.00 0.00 3.06
260 261 0.824759 GCCTAGACCTCCACGAATGT 59.175 55.000 0.00 0.00 0.00 2.71
261 262 0.824109 TGCCTAGACCTCCACGAATG 59.176 55.000 0.00 0.00 0.00 2.67
262 263 1.568504 TTGCCTAGACCTCCACGAAT 58.431 50.000 0.00 0.00 0.00 3.34
263 264 1.344065 TTTGCCTAGACCTCCACGAA 58.656 50.000 0.00 0.00 0.00 3.85
264 265 1.344065 TTTTGCCTAGACCTCCACGA 58.656 50.000 0.00 0.00 0.00 4.35
265 266 2.178912 TTTTTGCCTAGACCTCCACG 57.821 50.000 0.00 0.00 0.00 4.94
266 267 7.875327 TTATAATTTTTGCCTAGACCTCCAC 57.125 36.000 0.00 0.00 0.00 4.02
267 268 8.887264 TTTTATAATTTTTGCCTAGACCTCCA 57.113 30.769 0.00 0.00 0.00 3.86
268 269 9.967346 GATTTTATAATTTTTGCCTAGACCTCC 57.033 33.333 0.00 0.00 0.00 4.30
269 270 9.665264 CGATTTTATAATTTTTGCCTAGACCTC 57.335 33.333 0.00 0.00 0.00 3.85
270 271 9.403583 TCGATTTTATAATTTTTGCCTAGACCT 57.596 29.630 0.00 0.00 0.00 3.85
273 274 9.677567 GCATCGATTTTATAATTTTTGCCTAGA 57.322 29.630 0.00 0.00 0.00 2.43
274 275 9.683069 AGCATCGATTTTATAATTTTTGCCTAG 57.317 29.630 0.00 0.00 0.00 3.02
275 276 9.677567 GAGCATCGATTTTATAATTTTTGCCTA 57.322 29.630 0.00 0.00 0.00 3.93
276 277 7.653311 GGAGCATCGATTTTATAATTTTTGCCT 59.347 33.333 0.00 0.00 34.37 4.75
277 278 7.437862 TGGAGCATCGATTTTATAATTTTTGCC 59.562 33.333 0.00 0.00 34.37 4.52
278 279 8.351495 TGGAGCATCGATTTTATAATTTTTGC 57.649 30.769 0.00 0.00 34.37 3.68
283 284 8.981647 GCATTTTGGAGCATCGATTTTATAATT 58.018 29.630 0.00 0.00 34.37 1.40
284 285 8.362639 AGCATTTTGGAGCATCGATTTTATAAT 58.637 29.630 0.00 0.00 34.37 1.28
285 286 7.715657 AGCATTTTGGAGCATCGATTTTATAA 58.284 30.769 0.00 0.00 34.37 0.98
286 287 7.275888 AGCATTTTGGAGCATCGATTTTATA 57.724 32.000 0.00 0.00 34.37 0.98
287 288 6.152932 AGCATTTTGGAGCATCGATTTTAT 57.847 33.333 0.00 0.00 34.37 1.40
288 289 5.581126 AGCATTTTGGAGCATCGATTTTA 57.419 34.783 0.00 0.00 34.37 1.52
289 290 4.460948 AGCATTTTGGAGCATCGATTTT 57.539 36.364 0.00 0.00 34.37 1.82
290 291 4.427312 GAAGCATTTTGGAGCATCGATTT 58.573 39.130 0.00 0.00 34.37 2.17
291 292 3.181483 GGAAGCATTTTGGAGCATCGATT 60.181 43.478 0.00 0.00 34.37 3.34
292 293 2.360165 GGAAGCATTTTGGAGCATCGAT 59.640 45.455 0.00 0.00 34.37 3.59
293 294 1.745087 GGAAGCATTTTGGAGCATCGA 59.255 47.619 0.00 0.00 34.37 3.59
294 295 1.473677 TGGAAGCATTTTGGAGCATCG 59.526 47.619 0.00 0.00 34.37 3.84
295 296 3.256558 GTTGGAAGCATTTTGGAGCATC 58.743 45.455 0.00 0.00 0.00 3.91
296 297 2.633967 TGTTGGAAGCATTTTGGAGCAT 59.366 40.909 0.00 0.00 0.00 3.79
297 298 2.037901 TGTTGGAAGCATTTTGGAGCA 58.962 42.857 0.00 0.00 0.00 4.26
298 299 2.818130 TGTTGGAAGCATTTTGGAGC 57.182 45.000 0.00 0.00 0.00 4.70
299 300 6.029346 ACTATTGTTGGAAGCATTTTGGAG 57.971 37.500 0.00 0.00 0.00 3.86
300 301 6.418057 AACTATTGTTGGAAGCATTTTGGA 57.582 33.333 0.00 0.00 34.71 3.53
301 302 7.495135 AAAACTATTGTTGGAAGCATTTTGG 57.505 32.000 0.00 0.00 36.39 3.28
338 339 3.550820 GTGGTCTGGGCCAAAAATTTTT 58.449 40.909 8.04 10.41 40.68 1.94
339 340 2.158682 GGTGGTCTGGGCCAAAAATTTT 60.159 45.455 8.04 0.00 40.68 1.82
340 341 1.419762 GGTGGTCTGGGCCAAAAATTT 59.580 47.619 8.04 0.00 40.68 1.82
341 342 1.055849 GGTGGTCTGGGCCAAAAATT 58.944 50.000 8.04 0.00 40.68 1.82
342 343 0.105246 TGGTGGTCTGGGCCAAAAAT 60.105 50.000 8.04 0.00 40.68 1.82
343 344 1.045911 GTGGTGGTCTGGGCCAAAAA 61.046 55.000 8.04 0.00 40.68 1.94
344 345 1.456705 GTGGTGGTCTGGGCCAAAA 60.457 57.895 8.04 0.00 40.68 2.44
345 346 1.063070 TAGTGGTGGTCTGGGCCAAA 61.063 55.000 8.04 0.00 40.68 3.28
346 347 1.063070 TTAGTGGTGGTCTGGGCCAA 61.063 55.000 8.04 0.00 40.68 4.52
347 348 0.844661 ATTAGTGGTGGTCTGGGCCA 60.845 55.000 5.85 5.85 35.93 5.36
348 349 0.394352 CATTAGTGGTGGTCTGGGCC 60.394 60.000 0.00 0.00 0.00 5.80
349 350 0.328258 ACATTAGTGGTGGTCTGGGC 59.672 55.000 0.00 0.00 0.00 5.36
350 351 1.628340 TGACATTAGTGGTGGTCTGGG 59.372 52.381 0.00 0.00 0.00 4.45
351 352 3.634397 ATGACATTAGTGGTGGTCTGG 57.366 47.619 0.00 0.00 0.00 3.86
352 353 5.003160 TGAAATGACATTAGTGGTGGTCTG 58.997 41.667 0.00 0.00 0.00 3.51
353 354 5.241403 TGAAATGACATTAGTGGTGGTCT 57.759 39.130 0.00 0.00 0.00 3.85
354 355 5.335661 GGTTGAAATGACATTAGTGGTGGTC 60.336 44.000 0.00 0.00 0.00 4.02
355 356 4.522789 GGTTGAAATGACATTAGTGGTGGT 59.477 41.667 0.00 0.00 0.00 4.16
356 357 4.766891 AGGTTGAAATGACATTAGTGGTGG 59.233 41.667 0.00 0.00 0.00 4.61
357 358 5.473162 TCAGGTTGAAATGACATTAGTGGTG 59.527 40.000 0.00 0.00 0.00 4.17
358 359 5.630121 TCAGGTTGAAATGACATTAGTGGT 58.370 37.500 0.00 0.00 0.00 4.16
359 360 6.573664 TTCAGGTTGAAATGACATTAGTGG 57.426 37.500 0.00 0.00 32.71 4.00
372 373 6.815089 ACTGTATGCAAAATTTCAGGTTGAA 58.185 32.000 0.00 0.00 34.03 2.69
373 374 6.403866 ACTGTATGCAAAATTTCAGGTTGA 57.596 33.333 0.00 0.00 0.00 3.18
374 375 8.081633 TCTAACTGTATGCAAAATTTCAGGTTG 58.918 33.333 0.00 2.63 0.00 3.77
375 376 8.177119 TCTAACTGTATGCAAAATTTCAGGTT 57.823 30.769 0.00 0.00 0.00 3.50
376 377 7.759489 TCTAACTGTATGCAAAATTTCAGGT 57.241 32.000 0.00 3.47 0.00 4.00
377 378 9.474920 TTTTCTAACTGTATGCAAAATTTCAGG 57.525 29.630 0.00 0.00 0.00 3.86
458 459 6.037098 CCGTGTGAACAGTAAAATCCAAAAA 58.963 36.000 0.00 0.00 0.00 1.94
459 460 5.450688 CCCGTGTGAACAGTAAAATCCAAAA 60.451 40.000 0.00 0.00 0.00 2.44
460 461 4.036971 CCCGTGTGAACAGTAAAATCCAAA 59.963 41.667 0.00 0.00 0.00 3.28
461 462 3.566322 CCCGTGTGAACAGTAAAATCCAA 59.434 43.478 0.00 0.00 0.00 3.53
462 463 3.142951 CCCGTGTGAACAGTAAAATCCA 58.857 45.455 0.00 0.00 0.00 3.41
463 464 3.404899 TCCCGTGTGAACAGTAAAATCC 58.595 45.455 0.00 0.00 0.00 3.01
464 465 4.062991 ACTCCCGTGTGAACAGTAAAATC 58.937 43.478 0.00 0.00 0.00 2.17
465 466 4.081322 ACTCCCGTGTGAACAGTAAAAT 57.919 40.909 0.00 0.00 0.00 1.82
466 467 3.547054 ACTCCCGTGTGAACAGTAAAA 57.453 42.857 0.00 0.00 0.00 1.52
467 468 4.877378 ATACTCCCGTGTGAACAGTAAA 57.123 40.909 0.00 0.00 0.00 2.01
468 469 5.653330 TCATATACTCCCGTGTGAACAGTAA 59.347 40.000 0.00 0.00 0.00 2.24
469 470 5.195185 TCATATACTCCCGTGTGAACAGTA 58.805 41.667 0.00 0.00 0.00 2.74
470 471 4.021229 TCATATACTCCCGTGTGAACAGT 58.979 43.478 0.00 0.00 0.00 3.55
471 472 4.611943 CTCATATACTCCCGTGTGAACAG 58.388 47.826 0.00 0.00 0.00 3.16
472 473 3.181479 GCTCATATACTCCCGTGTGAACA 60.181 47.826 0.00 0.00 0.00 3.18
473 474 3.068307 AGCTCATATACTCCCGTGTGAAC 59.932 47.826 0.00 0.00 0.00 3.18
474 475 3.296854 AGCTCATATACTCCCGTGTGAA 58.703 45.455 0.00 0.00 0.00 3.18
475 476 2.885266 GAGCTCATATACTCCCGTGTGA 59.115 50.000 9.40 0.00 0.00 3.58
476 477 2.350868 CGAGCTCATATACTCCCGTGTG 60.351 54.545 15.40 0.00 0.00 3.82
477 478 1.880675 CGAGCTCATATACTCCCGTGT 59.119 52.381 15.40 0.00 0.00 4.49
478 479 1.200252 CCGAGCTCATATACTCCCGTG 59.800 57.143 15.40 0.00 0.00 4.94
479 480 1.073444 TCCGAGCTCATATACTCCCGT 59.927 52.381 15.40 0.00 0.00 5.28
480 481 1.822506 TCCGAGCTCATATACTCCCG 58.177 55.000 15.40 0.00 0.00 5.14
481 482 3.357203 TGATCCGAGCTCATATACTCCC 58.643 50.000 15.40 0.00 0.00 4.30
482 483 5.392767 TTTGATCCGAGCTCATATACTCC 57.607 43.478 15.40 0.00 0.00 3.85
483 484 7.767261 AGTATTTGATCCGAGCTCATATACTC 58.233 38.462 15.40 1.97 40.64 2.59
484 485 7.147983 GGAGTATTTGATCCGAGCTCATATACT 60.148 40.741 15.40 13.64 43.95 2.12
485 486 6.975772 GGAGTATTTGATCCGAGCTCATATAC 59.024 42.308 15.40 9.44 37.59 1.47
486 487 6.663523 TGGAGTATTTGATCCGAGCTCATATA 59.336 38.462 15.40 0.00 38.52 0.86
487 488 5.481824 TGGAGTATTTGATCCGAGCTCATAT 59.518 40.000 15.40 5.99 38.52 1.78
488 489 4.832823 TGGAGTATTTGATCCGAGCTCATA 59.167 41.667 15.40 0.29 38.52 2.15
489 490 3.643320 TGGAGTATTTGATCCGAGCTCAT 59.357 43.478 15.40 0.00 38.52 2.90
490 491 3.031013 TGGAGTATTTGATCCGAGCTCA 58.969 45.455 15.40 0.00 38.52 4.26
491 492 3.735237 TGGAGTATTTGATCCGAGCTC 57.265 47.619 2.73 2.73 38.52 4.09
492 493 3.389329 ACATGGAGTATTTGATCCGAGCT 59.611 43.478 0.00 0.00 38.52 4.09
493 494 3.733337 ACATGGAGTATTTGATCCGAGC 58.267 45.455 0.00 0.00 38.52 5.03
494 495 5.207110 AGACATGGAGTATTTGATCCGAG 57.793 43.478 0.00 0.00 38.52 4.63
495 496 5.614324 AAGACATGGAGTATTTGATCCGA 57.386 39.130 0.00 0.00 38.52 4.55
496 497 6.280643 TGTAAGACATGGAGTATTTGATCCG 58.719 40.000 0.00 0.00 38.52 4.18
497 498 9.209175 GTATGTAAGACATGGAGTATTTGATCC 57.791 37.037 0.00 0.00 39.53 3.36
498 499 8.916654 CGTATGTAAGACATGGAGTATTTGATC 58.083 37.037 0.00 0.00 39.53 2.92
499 500 7.872993 CCGTATGTAAGACATGGAGTATTTGAT 59.127 37.037 0.00 0.00 39.53 2.57
500 501 7.207383 CCGTATGTAAGACATGGAGTATTTGA 58.793 38.462 0.00 0.00 39.53 2.69
501 502 6.423905 CCCGTATGTAAGACATGGAGTATTTG 59.576 42.308 0.00 0.00 39.53 2.32
502 503 6.099269 ACCCGTATGTAAGACATGGAGTATTT 59.901 38.462 0.00 0.00 39.53 1.40
503 504 5.601313 ACCCGTATGTAAGACATGGAGTATT 59.399 40.000 0.00 0.00 39.53 1.89
504 505 5.145564 ACCCGTATGTAAGACATGGAGTAT 58.854 41.667 0.00 0.00 39.53 2.12
505 506 4.539726 ACCCGTATGTAAGACATGGAGTA 58.460 43.478 0.00 0.00 39.53 2.59
506 507 3.371965 ACCCGTATGTAAGACATGGAGT 58.628 45.455 0.00 0.00 39.53 3.85
507 508 5.470368 CATACCCGTATGTAAGACATGGAG 58.530 45.833 6.68 0.00 39.53 3.86
508 509 5.462530 CATACCCGTATGTAAGACATGGA 57.537 43.478 6.68 0.00 39.53 3.41
519 520 5.163447 CCCCACTCATATACATACCCGTATG 60.163 48.000 12.30 12.30 46.24 2.39
520 521 4.960469 CCCCACTCATATACATACCCGTAT 59.040 45.833 0.00 0.00 36.13 3.06
521 522 4.202706 ACCCCACTCATATACATACCCGTA 60.203 45.833 0.00 0.00 0.00 4.02
522 523 3.170717 CCCCACTCATATACATACCCGT 58.829 50.000 0.00 0.00 0.00 5.28
523 524 3.170717 ACCCCACTCATATACATACCCG 58.829 50.000 0.00 0.00 0.00 5.28
524 525 4.349930 ACAACCCCACTCATATACATACCC 59.650 45.833 0.00 0.00 0.00 3.69
525 526 5.562298 ACAACCCCACTCATATACATACC 57.438 43.478 0.00 0.00 0.00 2.73
526 527 7.299246 AGTACAACCCCACTCATATACATAC 57.701 40.000 0.00 0.00 0.00 2.39
527 528 7.924358 AAGTACAACCCCACTCATATACATA 57.076 36.000 0.00 0.00 0.00 2.29
528 529 6.824958 AAGTACAACCCCACTCATATACAT 57.175 37.500 0.00 0.00 0.00 2.29
529 530 6.442564 AGAAAGTACAACCCCACTCATATACA 59.557 38.462 0.00 0.00 0.00 2.29
530 531 6.885922 AGAAAGTACAACCCCACTCATATAC 58.114 40.000 0.00 0.00 0.00 1.47
531 532 8.480501 GTTAGAAAGTACAACCCCACTCATATA 58.519 37.037 0.00 0.00 0.00 0.86
532 533 7.037873 TGTTAGAAAGTACAACCCCACTCATAT 60.038 37.037 0.00 0.00 0.00 1.78
533 534 6.270463 TGTTAGAAAGTACAACCCCACTCATA 59.730 38.462 0.00 0.00 0.00 2.15
534 535 5.072600 TGTTAGAAAGTACAACCCCACTCAT 59.927 40.000 0.00 0.00 0.00 2.90
535 536 4.409574 TGTTAGAAAGTACAACCCCACTCA 59.590 41.667 0.00 0.00 0.00 3.41
536 537 4.964593 TGTTAGAAAGTACAACCCCACTC 58.035 43.478 0.00 0.00 0.00 3.51
566 567 2.687935 CCGAAAAGGTTGACATATGGGG 59.312 50.000 7.80 0.00 34.51 4.96
570 571 3.366052 AGGCCGAAAAGGTTGACATAT 57.634 42.857 0.00 0.00 43.70 1.78
576 577 5.576447 ATGTTATAAGGCCGAAAAGGTTG 57.424 39.130 0.00 0.00 43.70 3.77
577 578 6.420638 AGTATGTTATAAGGCCGAAAAGGTT 58.579 36.000 0.00 0.00 43.70 3.50
580 581 8.548721 CAGTAAGTATGTTATAAGGCCGAAAAG 58.451 37.037 0.00 0.00 0.00 2.27
584 585 6.720112 ACAGTAAGTATGTTATAAGGCCGA 57.280 37.500 0.00 0.00 0.00 5.54
585 586 7.428020 TGTACAGTAAGTATGTTATAAGGCCG 58.572 38.462 0.00 0.00 34.67 6.13
595 596 4.142138 GGAGCAGCTGTACAGTAAGTATGT 60.142 45.833 23.44 1.61 34.67 2.29
596 597 4.142160 TGGAGCAGCTGTACAGTAAGTATG 60.142 45.833 23.44 13.34 34.67 2.39
597 598 4.023980 TGGAGCAGCTGTACAGTAAGTAT 58.976 43.478 23.44 6.01 34.67 2.12
598 599 3.427573 TGGAGCAGCTGTACAGTAAGTA 58.572 45.455 23.44 2.98 0.00 2.24
599 600 2.248248 TGGAGCAGCTGTACAGTAAGT 58.752 47.619 23.44 7.15 0.00 2.24
600 601 3.533606 ATGGAGCAGCTGTACAGTAAG 57.466 47.619 23.44 14.34 0.00 2.34
601 602 3.981071 AATGGAGCAGCTGTACAGTAA 57.019 42.857 23.44 3.22 0.00 2.24
608 2326 1.679311 TCCGAAATGGAGCAGCTGT 59.321 52.632 16.64 1.59 43.74 4.40
715 2442 2.863988 AGGACCTGGGGTTTGGGG 60.864 66.667 0.00 0.00 35.25 4.96
956 2683 2.037136 CGCCAGCTTCAGGACCAAG 61.037 63.158 0.00 0.00 0.00 3.61
981 2708 2.549282 GCGAAAACGAAGCAGCGA 59.451 55.556 5.21 0.00 34.83 4.93
984 2711 0.516877 TCATGGCGAAAACGAAGCAG 59.483 50.000 0.00 0.00 0.00 4.24
1101 2828 2.898920 ATCCTTGGACATGCCGCCAG 62.899 60.000 0.00 0.00 40.66 4.85
1126 2853 4.910585 AACCCGATCCGATGCCGC 62.911 66.667 0.00 0.00 0.00 6.53
1147 2874 1.071228 CCGCTGAATCCCATGATCAGA 59.929 52.381 16.75 0.00 32.47 3.27
1233 2963 0.755686 GCCTGATCTTCCGATCCACT 59.244 55.000 0.00 0.00 44.40 4.00
1320 3050 2.747460 TCGCTGAAGCACATGCCC 60.747 61.111 0.00 0.00 43.38 5.36
1512 3242 4.272504 TCAAACTCGTTGACAGGATTGAAC 59.727 41.667 0.00 0.00 41.47 3.18
1827 3557 6.069440 ACTCCAGGATCTTCAATTCCACATTA 60.069 38.462 0.00 0.00 34.27 1.90
1860 3590 0.394216 CCCGCTGGATTCCAATGTCA 60.394 55.000 6.88 0.00 30.80 3.58
2547 4277 4.035675 GCCAGCTTGATCATGTTTACTACC 59.964 45.833 10.05 0.00 0.00 3.18
2781 4511 5.048921 ACTCATGAAACATTTGTCTGAGCAG 60.049 40.000 0.00 0.00 33.61 4.24
2853 4583 5.202746 TGTCCTTAGCTACTTCCCTCTTA 57.797 43.478 0.00 0.00 0.00 2.10
3003 4735 0.321564 CACCATCCACACGACCACAT 60.322 55.000 0.00 0.00 0.00 3.21
3050 4782 6.803787 TGGAACAATCACCAGCACAAGCTA 62.804 45.833 0.00 0.00 43.81 3.32
3052 4784 1.336240 GGAACAATCACCAGCACAAGC 60.336 52.381 0.00 0.00 42.56 4.01
3053 4785 1.955778 TGGAACAATCACCAGCACAAG 59.044 47.619 0.00 0.00 31.92 3.16
3055 4787 1.608055 CTGGAACAATCACCAGCACA 58.392 50.000 0.00 0.00 45.30 4.57
3060 4792 0.187117 TTGGCCTGGAACAATCACCA 59.813 50.000 3.32 0.00 38.70 4.17
3077 4809 5.163754 GGTCCGATGGTTTACTGAATCTTTG 60.164 44.000 0.00 0.00 0.00 2.77
3078 4810 4.941873 GGTCCGATGGTTTACTGAATCTTT 59.058 41.667 0.00 0.00 0.00 2.52
3093 4825 3.426695 GCTCTCAAAAACATGGTCCGATG 60.427 47.826 0.00 1.14 0.00 3.84
3096 4828 2.154462 AGCTCTCAAAAACATGGTCCG 58.846 47.619 0.00 0.00 0.00 4.79
3215 4949 5.532406 TGAAGCATCTATAATGTTTCCCTGC 59.468 40.000 10.71 0.00 38.11 4.85
3217 4951 6.904626 ACTGAAGCATCTATAATGTTTCCCT 58.095 36.000 10.71 0.00 38.11 4.20
3279 5037 7.187244 TCCGTATCTAGACAAATCTAAGACG 57.813 40.000 0.00 0.00 36.98 4.18
3332 5090 7.339721 TGAAAGTATCAAATACTCTCTCCGTCT 59.660 37.037 0.35 0.00 44.94 4.18
3335 5093 6.419413 GCTGAAAGTATCAAATACTCTCTCCG 59.581 42.308 0.35 0.00 44.94 4.63
3410 5168 4.764050 TCTTCACCTTGAACCAGTTACA 57.236 40.909 0.00 0.00 32.21 2.41
3412 5170 6.096282 CCTTTTTCTTCACCTTGAACCAGTTA 59.904 38.462 0.00 0.00 32.21 2.24
3413 5171 5.105351 CCTTTTTCTTCACCTTGAACCAGTT 60.105 40.000 0.00 0.00 32.21 3.16
3414 5172 4.402474 CCTTTTTCTTCACCTTGAACCAGT 59.598 41.667 0.00 0.00 32.21 4.00
3415 5173 4.402474 ACCTTTTTCTTCACCTTGAACCAG 59.598 41.667 0.00 0.00 32.21 4.00
3416 5174 4.349365 ACCTTTTTCTTCACCTTGAACCA 58.651 39.130 0.00 0.00 32.21 3.67
3417 5175 5.339008 AACCTTTTTCTTCACCTTGAACC 57.661 39.130 0.00 0.00 32.21 3.62
3418 5176 5.034797 CGAACCTTTTTCTTCACCTTGAAC 58.965 41.667 0.00 0.00 32.21 3.18
3419 5177 4.439563 GCGAACCTTTTTCTTCACCTTGAA 60.440 41.667 0.00 0.00 34.79 2.69
3420 5178 3.066203 GCGAACCTTTTTCTTCACCTTGA 59.934 43.478 0.00 0.00 0.00 3.02
3421 5179 3.066760 AGCGAACCTTTTTCTTCACCTTG 59.933 43.478 0.00 0.00 0.00 3.61
3422 5180 3.066760 CAGCGAACCTTTTTCTTCACCTT 59.933 43.478 0.00 0.00 0.00 3.50
3423 5181 2.618709 CAGCGAACCTTTTTCTTCACCT 59.381 45.455 0.00 0.00 0.00 4.00
3424 5182 2.858646 GCAGCGAACCTTTTTCTTCACC 60.859 50.000 0.00 0.00 0.00 4.02
3425 5183 2.033424 AGCAGCGAACCTTTTTCTTCAC 59.967 45.455 0.00 0.00 0.00 3.18
3426 5184 2.297701 AGCAGCGAACCTTTTTCTTCA 58.702 42.857 0.00 0.00 0.00 3.02
3437 5195 2.475200 ACAAACTGAAAGCAGCGAAC 57.525 45.000 0.00 0.00 46.26 3.95
3440 5198 1.775208 CGAAACAAACTGAAAGCAGCG 59.225 47.619 0.00 0.00 46.26 5.18
3449 5207 3.705604 ACAGCAAATCCGAAACAAACTG 58.294 40.909 0.00 0.00 0.00 3.16
3468 5226 8.581253 TCTCTCTATACAAGAATCTGTTGACA 57.419 34.615 0.00 0.00 32.46 3.58
3476 5234 9.973450 TTAACAGCATCTCTCTATACAAGAATC 57.027 33.333 0.00 0.00 32.46 2.52
3500 5258 6.623986 CGTTGCCTAGCACCAAAATTATGTTA 60.624 38.462 0.00 0.00 38.71 2.41
3503 5261 4.104776 CGTTGCCTAGCACCAAAATTATG 58.895 43.478 0.00 0.00 38.71 1.90
3505 5263 2.094957 GCGTTGCCTAGCACCAAAATTA 60.095 45.455 0.00 0.00 38.71 1.40
3523 5281 2.609427 ATACATGATCACTGCTGCGT 57.391 45.000 0.00 0.00 0.00 5.24
3552 5310 1.525995 GCCGGGGTACATGTGATGG 60.526 63.158 9.11 4.42 33.60 3.51
3567 5325 5.295292 ACTTATTCATCATCTTTCAGTGCCG 59.705 40.000 0.00 0.00 0.00 5.69
3568 5326 6.690194 ACTTATTCATCATCTTTCAGTGCC 57.310 37.500 0.00 0.00 0.00 5.01
3569 5327 8.239314 TGAAACTTATTCATCATCTTTCAGTGC 58.761 33.333 0.00 0.00 0.00 4.40
3605 5365 8.972262 AAAAACAAAACCACGCAAAAATATTT 57.028 23.077 0.00 0.00 0.00 1.40
3606 5366 8.454894 AGAAAAACAAAACCACGCAAAAATATT 58.545 25.926 0.00 0.00 0.00 1.28
3607 5367 7.980062 AGAAAAACAAAACCACGCAAAAATAT 58.020 26.923 0.00 0.00 0.00 1.28
3616 5376 7.749539 ATTCTACAAGAAAAACAAAACCACG 57.250 32.000 0.00 0.00 37.82 4.94
3619 5379 8.318167 CGTGAATTCTACAAGAAAAACAAAACC 58.682 33.333 7.05 0.00 37.82 3.27
3645 5405 3.349022 TCCATCCAAAAATACGACCACC 58.651 45.455 0.00 0.00 0.00 4.61
3664 5424 4.743493 ACATGGTGCAATCGTAAAAATCC 58.257 39.130 0.00 0.00 0.00 3.01
3690 5450 4.670735 CGGAAAAGAAAGACACGTTGTTGT 60.671 41.667 0.00 0.00 0.00 3.32
3691 5451 3.783943 CGGAAAAGAAAGACACGTTGTTG 59.216 43.478 0.00 0.00 0.00 3.33
3692 5452 3.729762 GCGGAAAAGAAAGACACGTTGTT 60.730 43.478 0.00 0.00 0.00 2.83
3712 5472 4.259850 GGAACAGAGTATTTCTTTAGCGCG 60.260 45.833 0.00 0.00 32.41 6.86
3714 5474 6.721571 TTGGAACAGAGTATTTCTTTAGCG 57.278 37.500 0.00 0.00 42.39 4.26
3747 5511 7.908601 CAGTTTGACTTCTGTAAAGTTAACACC 59.091 37.037 8.61 0.00 32.42 4.16
3751 5515 7.769044 AGAGCAGTTTGACTTCTGTAAAGTTAA 59.231 33.333 0.00 0.00 34.57 2.01
3814 5579 7.149973 TCTAGCGATACGTATTAGGCATTTTT 58.850 34.615 21.43 9.17 0.00 1.94
3816 5581 6.263516 TCTAGCGATACGTATTAGGCATTT 57.736 37.500 21.43 9.68 0.00 2.32
3820 5615 5.877031 TGAATCTAGCGATACGTATTAGGC 58.123 41.667 9.92 13.26 0.00 3.93
3865 5660 9.921637 GAACATCTCCAATACCAAATAAACAAA 57.078 29.630 0.00 0.00 0.00 2.83
3866 5661 9.083422 TGAACATCTCCAATACCAAATAAACAA 57.917 29.630 0.00 0.00 0.00 2.83
3867 5662 8.519526 GTGAACATCTCCAATACCAAATAAACA 58.480 33.333 0.00 0.00 0.00 2.83
3868 5663 8.519526 TGTGAACATCTCCAATACCAAATAAAC 58.480 33.333 0.00 0.00 0.00 2.01
3869 5664 8.642935 TGTGAACATCTCCAATACCAAATAAA 57.357 30.769 0.00 0.00 0.00 1.40
3870 5665 8.821686 ATGTGAACATCTCCAATACCAAATAA 57.178 30.769 0.00 0.00 28.78 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.