AutoCloner

Multiple sequence alignment - TraesCS7D01G251800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G251800	chr7D	100.000	3326	0	0	1	3326	226115974	226112649	0.000000e+00	6143.0
1	TraesCS7D01G251800	chr7D	91.732	895	56	14	1	886	601934548	601933663	0.000000e+00	1227.0
2	TraesCS7D01G251800	chr7D	87.709	895	89	17	1	883	260010308	260011193	0.000000e+00	1024.0
3	TraesCS7D01G251800	chr7D	79.474	760	109	27	1523	2269	104366133	104365408	2.300000e-136	496.0
4	TraesCS7D01G251800	chr7D	79.243	766	108	30	1612	2354	104226663	104225926	1.390000e-133	486.0
5	TraesCS7D01G251800	chr7D	77.679	560	85	32	1582	2126	114469989	114470523	4.170000e-79	305.0
6	TraesCS7D01G251800	chr7D	90.968	155	14	0	1745	1899	114469524	114469678	3.360000e-50	209.0
7	TraesCS7D01G251800	chr7D	89.147	129	9	3	2366	2490	104365362	104365235	4.440000e-34	156.0
8	TraesCS7D01G251800	chr7D	94.030	67	4	0	2347	2413	114148856	114148790	5.870000e-18	102.0
9	TraesCS7D01G251800	chr1D	93.042	891	52	7	1	886	446004328	446005213	0.000000e+00	1293.0
10	TraesCS7D01G251800	chr7B	89.343	1004	52	18	1609	2589	197699482	197698511	0.000000e+00	1210.0
11	TraesCS7D01G251800	chr7B	91.877	714	38	7	883	1593	197703708	197703012	0.000000e+00	979.0
12	TraesCS7D01G251800	chr7B	86.417	854	101	12	43	886	510217953	510217105	0.000000e+00	920.0
13	TraesCS7D01G251800	chr7B	85.945	868	103	14	43	898	41036327	41035467	0.000000e+00	909.0
14	TraesCS7D01G251800	chr7B	89.295	383	33	7	2585	2962	197697304	197696925	1.080000e-129	473.0
15	TraesCS7D01G251800	chr7B	84.742	485	49	13	1730	2204	62478838	62478369	2.340000e-126	462.0
16	TraesCS7D01G251800	chr7B	82.420	529	70	12	1745	2269	73934785	73934276	1.100000e-119	440.0
17	TraesCS7D01G251800	chr7B	88.525	183	11	5	1247	1426	73990444	73990619	2.600000e-51	213.0
18	TraesCS7D01G251800	chr7B	86.957	115	13	2	2366	2479	62483008	62482895	9.690000e-26	128.0
19	TraesCS7D01G251800	chr7B	92.537	67	5	0	2347	2413	73934023	73933957	2.730000e-16	97.1
20	TraesCS7D01G251800	chr7A	90.315	888	52	10	2455	3326	238116417	238115548	0.000000e+00	1133.0
21	TraesCS7D01G251800	chr7A	87.031	879	100	10	1	867	283133560	283134436	0.000000e+00	979.0
22	TraesCS7D01G251800	chr7A	88.575	779	63	11	883	1655	238124261	238123503	0.000000e+00	922.0
23	TraesCS7D01G251800	chr7A	76.929	1205	140	62	1038	2204	108547733	108546629	2.900000e-155	558.0
24	TraesCS7D01G251800	chr7A	92.669	341	24	1	2123	2463	238117322	238116983	1.070000e-134	490.0
25	TraesCS7D01G251800	chr7A	94.620	316	16	1	1730	2045	238121790	238121476	3.860000e-134	488.0
26	TraesCS7D01G251800	chr7A	81.733	531	72	13	1745	2269	119306165	119305654	1.430000e-113	420.0
27	TraesCS7D01G251800	chr7A	84.874	119	16	2	2366	2483	108565195	108565078	5.830000e-23	119.0
28	TraesCS7D01G251800	chr7A	97.619	42	0	1	1	41	15479694	15479735	1.660000e-08	71.3
29	TraesCS7D01G251800	chr7A	97.619	42	0	1	1	41	15482481	15482522	1.660000e-08	71.3
30	TraesCS7D01G251800	chr7A	97.619	42	0	1	1	41	15485311	15485352	1.660000e-08	71.3
31	TraesCS7D01G251800	chr7A	97.500	40	0	1	1	39	15440359	15440398	2.140000e-07	67.6
32	TraesCS7D01G251800	chrUn	86.926	849	100	10	43	883	35283280	35284125	0.000000e+00	942.0
33	TraesCS7D01G251800	chr4A	86.183	854	104	10	43	887	677375519	677374671	0.000000e+00	911.0
34	TraesCS7D01G251800	chr4A	86.380	837	95	16	57	881	744004102	744003273	0.000000e+00	896.0
35	TraesCS7D01G251800	chr2B	100.000	37	0	0	5	41	34545957	34545921	5.950000e-08	69.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G251800	chr7D	226112649	226115974	3325	True	6143.000000	6143	100.000000	1	3326	1	chr7D.!!$R3	3325
1	TraesCS7D01G251800	chr7D	601933663	601934548	885	True	1227.000000	1227	91.732000	1	886	1	chr7D.!!$R4	885
2	TraesCS7D01G251800	chr7D	260010308	260011193	885	False	1024.000000	1024	87.709000	1	883	1	chr7D.!!$F1	882
3	TraesCS7D01G251800	chr7D	104225926	104226663	737	True	486.000000	486	79.243000	1612	2354	1	chr7D.!!$R1	742
4	TraesCS7D01G251800	chr7D	104365235	104366133	898	True	326.000000	496	84.310500	1523	2490	2	chr7D.!!$R5	967
5	TraesCS7D01G251800	chr7D	114469524	114470523	999	False	257.000000	305	84.323500	1582	2126	2	chr7D.!!$F2	544
6	TraesCS7D01G251800	chr1D	446004328	446005213	885	False	1293.000000	1293	93.042000	1	886	1	chr1D.!!$F1	885
7	TraesCS7D01G251800	chr7B	510217105	510217953	848	True	920.000000	920	86.417000	43	886	1	chr7B.!!$R4	843
8	TraesCS7D01G251800	chr7B	41035467	41036327	860	True	909.000000	909	85.945000	43	898	1	chr7B.!!$R1	855
9	TraesCS7D01G251800	chr7B	197696925	197703708	6783	True	887.333333	1210	90.171667	883	2962	3	chr7B.!!$R6	2079
10	TraesCS7D01G251800	chr7B	73933957	73934785	828	True	268.550000	440	87.478500	1745	2413	2	chr7B.!!$R5	668
11	TraesCS7D01G251800	chr7A	283133560	283134436	876	False	979.000000	979	87.031000	1	867	1	chr7A.!!$F2	866
12	TraesCS7D01G251800	chr7A	238115548	238117322	1774	True	811.500000	1133	91.492000	2123	3326	2	chr7A.!!$R4	1203
13	TraesCS7D01G251800	chr7A	238121476	238124261	2785	True	705.000000	922	91.597500	883	2045	2	chr7A.!!$R5	1162
14	TraesCS7D01G251800	chr7A	108546629	108547733	1104	True	558.000000	558	76.929000	1038	2204	1	chr7A.!!$R1	1166
15	TraesCS7D01G251800	chr7A	119305654	119306165	511	True	420.000000	420	81.733000	1745	2269	1	chr7A.!!$R3	524
16	TraesCS7D01G251800	chrUn	35283280	35284125	845	False	942.000000	942	86.926000	43	883	1	chrUn.!!$F1	840
17	TraesCS7D01G251800	chr4A	677374671	677375519	848	True	911.000000	911	86.183000	43	887	1	chr4A.!!$R1	844
18	TraesCS7D01G251800	chr4A	744003273	744004102	829	True	896.000000	896	86.380000	57	881	1	chr4A.!!$R2	824

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
798	826	0.681733	ATCGCACCGCTATGGAGATT	59.318	50.0	0.0	0.0	42.0	2.4	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2787	9990	0.734889	ATCCGAATTGCTCCTTTGCG	59.265	50.0	0.0	0.0	35.36	4.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
176	186	7.632861	TCCTTCAACTCATGATTTTCTGGATA	58.367	34.615	0.00	0.00	38.03	2.59
185	197	5.168526	TGATTTTCTGGATATTTTCGCCG	57.831	39.130	0.00	0.00	0.00	6.46
361	374	4.463879	CTCAGCCGCACTCCCCTG	62.464	72.222	0.00	0.00	0.00	4.45
473	496	9.455847	GCGCTAAAATGATCAAAGAGAATAAAT	57.544	29.630	0.00	0.00	0.00	1.40
593	618	2.169330	GTAAGAGGGAGTGGTCGAAGT	58.831	52.381	0.00	0.00	0.00	3.01
601	626	1.000938	GAGTGGTCGAAGTAACCGTGT	60.001	52.381	0.00	0.00	39.81	4.49
624	649	1.457079	AAGGTCGCCCCGTAGCTAT	60.457	57.895	0.00	0.00	38.74	2.97
630	655	2.029649	GTCGCCCCGTAGCTATCAAATA	60.030	50.000	0.00	0.00	0.00	1.40
664	690	3.195825	ACAATCCCGAGAAAGAGACGAAT	59.804	43.478	0.00	0.00	0.00	3.34
785	813	2.685897	ACAACTCCTCTCTCTATCGCAC	59.314	50.000	0.00	0.00	0.00	5.34
798	826	0.681733	ATCGCACCGCTATGGAGATT	59.318	50.000	0.00	0.00	42.00	2.40
867	896	2.622064	ATATCTCTCCCGTTGCAACC	57.378	50.000	23.42	6.48	0.00	3.77
1150	1191	0.179020	CCCACTGCCTTGTTCTGACA	60.179	55.000	0.00	0.00	0.00	3.58
1210	1251	5.184287	ACCCATCAAACGGTTTTTATACCTG	59.816	40.000	2.79	0.00	35.97	4.00
1231	1275	5.361135	TGACAAATTATATGATGCGCCTG	57.639	39.130	4.18	0.00	0.00	4.85
1356	1408	1.109609	TGCCACTGAAATGTGCACAA	58.890	45.000	25.72	6.15	36.68	3.33
1357	1409	1.067364	TGCCACTGAAATGTGCACAAG	59.933	47.619	25.72	18.75	36.68	3.16
1401	1453	5.792741	CAGAGGAGGCCTATCTTAGATTTG	58.207	45.833	15.75	2.59	31.76	2.32
1404	1456	4.068599	GGAGGCCTATCTTAGATTTGTGC	58.931	47.826	4.42	0.00	0.00	4.57
1405	1457	4.202409	GGAGGCCTATCTTAGATTTGTGCT	60.202	45.833	4.42	0.00	0.00	4.40
1406	1458	5.012148	GGAGGCCTATCTTAGATTTGTGCTA	59.988	44.000	4.42	0.00	0.00	3.49
1407	1459	6.464465	GGAGGCCTATCTTAGATTTGTGCTAA	60.464	42.308	4.42	0.00	0.00	3.09
1409	1461	7.521669	AGGCCTATCTTAGATTTGTGCTAAAT	58.478	34.615	1.29	0.11	0.00	1.40
1410	1462	8.001292	AGGCCTATCTTAGATTTGTGCTAAATT	58.999	33.333	1.29	0.00	0.00	1.82
1519	1577	4.505313	TGAGTACACAGCGGATATGATC	57.495	45.455	0.00	0.00	0.00	2.92
1520	1578	3.888930	TGAGTACACAGCGGATATGATCA	59.111	43.478	0.00	0.00	0.00	2.92
1521	1579	4.230657	GAGTACACAGCGGATATGATCAC	58.769	47.826	0.00	0.00	0.00	3.06
1535	1593	7.041576	CGGATATGATCACATGATGAACAGTTT	60.042	37.037	0.00	0.00	42.75	2.66
1548	1606	8.681486	TGATGAACAGTTTATTCCATGATAGG	57.319	34.615	0.00	0.00	0.00	2.57
1556	1614	0.529773	TTCCATGATAGGCGTGCGTC	60.530	55.000	0.00	0.00	31.94	5.19
1559	1617	1.667177	CCATGATAGGCGTGCGTCTAG	60.667	57.143	11.53	0.00	35.65	2.43
1645	5217	8.330466	TGTGGTTGTCGAAATATAACTTTGAT	57.670	30.769	0.00	0.00	0.00	2.57
1713	6913	1.804151	TGTACTGCCGTGAAAGCATTC	59.196	47.619	0.00	0.00	40.04	2.67
1716	6916	1.937546	CTGCCGTGAAAGCATTCCCC	61.938	60.000	0.00	0.00	40.04	4.81
1717	6917	2.710902	GCCGTGAAAGCATTCCCCC	61.711	63.158	0.00	0.00	34.49	5.40
1977	7196	5.547465	TCTGATTTTGCTAGGAAGACGAAA	58.453	37.500	0.00	0.00	0.00	3.46
2055	7278	4.695928	GGCAAGGTAGCTAGTATTATTGGC	59.304	45.833	0.00	2.36	35.32	4.52
2078	7301	6.935208	GGCGATGGGATAACTAGAATTAAAGT	59.065	38.462	0.00	0.00	0.00	2.66
2415	7816	6.719370	AGGAAAACACTGTTGGCTAATTATGA	59.281	34.615	0.00	0.00	0.00	2.15
2418	7819	5.505173	ACACTGTTGGCTAATTATGATGC	57.495	39.130	0.00	0.00	0.00	3.91
2504	8493	1.164041	GGTAACACCACAAGCTGCGT	61.164	55.000	0.00	0.00	38.42	5.24
2523	8512	2.125106	GAGCAGGTGCCCCGTTAG	60.125	66.667	0.00	0.00	43.38	2.34
2554	8543	9.237187	TGCAGGTTAATTAGTGTTTGATAATCA	57.763	29.630	0.00	0.00	0.00	2.57
2589	8578	3.935203	GCGGTGATTATCTGTGGATATGG	59.065	47.826	0.00	0.00	34.78	2.74
2701	9903	4.501400	GGAAACAGTAATTGCCTGCTTTGT	60.501	41.667	6.82	0.00	33.09	2.83
2750	9953	9.793259	TCTTCATTTCCAGTATTTGTTACTCTT	57.207	29.630	0.00	0.00	39.19	2.85
2774	9977	8.549338	TTTTTCCGTAAATGTTCTTTGGTTTT	57.451	26.923	0.00	0.00	0.00	2.43
2785	9988	2.951642	TCTTTGGTTTTGTCAGCTGAGG	59.048	45.455	18.89	0.00	0.00	3.86
2787	9990	0.823356	TGGTTTTGTCAGCTGAGGCC	60.823	55.000	18.89	14.71	39.73	5.19
2814	10017	4.384056	AGGAGCAATTCGGATGTTCATAG	58.616	43.478	0.00	0.00	30.54	2.23
2834	10037	1.792757	TTGAACCTGATGCCCAGCCT	61.793	55.000	0.00	0.00	41.57	4.58
2844	10047	2.671070	CCCAGCCTGTCGTCCAAT	59.329	61.111	0.00	0.00	0.00	3.16
2921	10125	4.835678	GGAAACCAAATTCCTGATGCAAT	58.164	39.130	0.00	0.00	44.54	3.56
3016	10220	4.013050	GGAAGAGTTCCTTGATCCCTTTG	58.987	47.826	0.00	0.00	46.57	2.77
3017	10221	3.078891	AGAGTTCCTTGATCCCTTTGC	57.921	47.619	0.00	0.00	0.00	3.68
3018	10222	2.376518	AGAGTTCCTTGATCCCTTTGCA	59.623	45.455	0.00	0.00	0.00	4.08
3019	10223	2.751806	GAGTTCCTTGATCCCTTTGCAG	59.248	50.000	0.00	0.00	0.00	4.41
3020	10224	1.203287	GTTCCTTGATCCCTTTGCAGC	59.797	52.381	0.00	0.00	0.00	5.25
3042	10246	0.387878	CAGCGGTCAGTGTCTCAGTC	60.388	60.000	0.00	0.00	0.00	3.51
3043	10247	0.823769	AGCGGTCAGTGTCTCAGTCA	60.824	55.000	0.00	0.00	0.00	3.41
3044	10248	0.664767	GCGGTCAGTGTCTCAGTCAC	60.665	60.000	0.00	0.00	36.22	3.67
3087	10291	1.136057	GCAACAACGGTAGCTTGCTAC	60.136	52.381	20.79	20.79	36.81	3.58
3097	10301	3.564644	GGTAGCTTGCTACGATAGAGTGA	59.435	47.826	21.70	0.00	41.38	3.41
3141	10345	0.526524	CTCAATGACTCGGCCTCGAC	60.527	60.000	0.00	0.00	40.88	4.20
3178	10382	3.834610	ACATCGTCACTGCTACAGTAAC	58.165	45.455	0.00	0.00	43.43	2.50
3180	10384	4.082190	ACATCGTCACTGCTACAGTAACAT	60.082	41.667	0.00	0.00	43.43	2.71
3186	10390	2.427453	ACTGCTACAGTAACATCCCTCG	59.573	50.000	0.00	0.00	43.46	4.63
3188	10392	1.538419	GCTACAGTAACATCCCTCGCC	60.538	57.143	0.00	0.00	0.00	5.54
3207	10411	2.594303	TTCAGCAACCACGGCAGG	60.594	61.111	0.00	0.00	0.00	4.85
3283	10488	3.411351	GGCTTCGACGCGCTTTGA	61.411	61.111	5.73	1.78	0.00	2.69
3308	10514	0.172578	CATCGTCACTGCTCCCGTAA	59.827	55.000	0.00	0.00	0.00	3.18
3317	10523	1.335132	TGCTCCCGTAACATCCCTCC	61.335	60.000	0.00	0.00	0.00	4.30

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
129	138	5.278022	GGATCGAAATCATGCTTAAAGACCC	60.278	44.000	0.00	0.00	33.21	4.46
176	186	2.033550	TGTGTTTGTAAGCGGCGAAAAT	59.966	40.909	12.98	0.00	0.00	1.82
185	197	2.480845	AGACGACCTGTGTTTGTAAGC	58.519	47.619	0.00	0.00	0.00	3.09
361	374	0.251354	TTGCTCCCTCAGATGACAGC	59.749	55.000	0.00	0.00	0.00	4.40
404	424	8.577048	TTTTATCCGACCAAACCAACATATTA	57.423	30.769	0.00	0.00	0.00	0.98
555	578	2.673074	CGATTGCGTAACCGGATGT	58.327	52.632	9.46	0.00	33.19	3.06
580	603	0.600057	ACGGTTACTTCGACCACTCC	59.400	55.000	0.00	0.00	36.99	3.85
581	604	1.000938	ACACGGTTACTTCGACCACTC	60.001	52.381	0.00	0.00	36.99	3.51
593	618	1.865788	CGACCTTCGGGACACGGTTA	61.866	60.000	0.00	0.00	44.45	2.85
624	649	4.365514	TTGTGTCTGCCTCCTTATTTGA	57.634	40.909	0.00	0.00	0.00	2.69
630	655	0.329596	GGGATTGTGTCTGCCTCCTT	59.670	55.000	0.00	0.00	0.00	3.36
806	835	5.305386	TCGGAGAGATAATTCATGTGTCCAT	59.695	40.000	0.00	0.00	39.64	3.41
816	845	5.344665	CGAGAAGCAATCGGAGAGATAATTC	59.655	44.000	0.00	0.00	43.63	2.17
1082	1115	1.067582	GATCGAACGAGGGCGGAAT	59.932	57.895	2.94	0.00	43.17	3.01
1150	1191	7.645058	AATTTGGTGATAAACGATGGATCTT	57.355	32.000	0.00	0.00	0.00	2.40
1186	1227	5.184287	CAGGTATAAAAACCGTTTGATGGGT	59.816	40.000	0.00	0.00	44.77	4.51
1210	1251	5.611796	TCAGGCGCATCATATAATTTGTC	57.388	39.130	10.83	0.00	0.00	3.18
1231	1275	2.115343	ATTGTCTCGGGAAAAGGCTC	57.885	50.000	0.00	0.00	0.00	4.70
1317	1368	7.290714	AGTGGCAATATTCATCATTATTGGGTT	59.709	33.333	0.00	0.00	36.66	4.11
1369	1421	1.382692	GGCCTCCTCTGCAAGCAATC	61.383	60.000	0.00	0.00	0.00	2.67
1370	1422	1.379576	GGCCTCCTCTGCAAGCAAT	60.380	57.895	0.00	0.00	0.00	3.56
1371	1423	1.200760	TAGGCCTCCTCTGCAAGCAA	61.201	55.000	9.68	0.00	34.61	3.91
1372	1424	0.984961	ATAGGCCTCCTCTGCAAGCA	60.985	55.000	9.68	0.00	34.61	3.91
1450	1508	5.240623	CACCCACTACAAATTGCTTCAGTAA	59.759	40.000	0.00	0.00	0.00	2.24
1451	1509	4.759693	CACCCACTACAAATTGCTTCAGTA	59.240	41.667	0.00	0.00	0.00	2.74
1483	1541	4.697756	TCAAAGTGCGAGCGGGGG	62.698	66.667	0.00	0.00	0.00	5.40
1492	1550	0.512952	CCGCTGTGTACTCAAAGTGC	59.487	55.000	0.00	0.00	37.90	4.40
1519	1577	7.764331	TCATGGAATAAACTGTTCATCATGTG	58.236	34.615	15.13	0.00	32.19	3.21
1520	1578	7.943079	TCATGGAATAAACTGTTCATCATGT	57.057	32.000	15.13	0.00	32.19	3.21
1535	1593	1.343142	ACGCACGCCTATCATGGAATA	59.657	47.619	0.00	0.00	0.00	1.75
1547	1605	2.222953	CCAAATAAACTAGACGCACGCC	60.223	50.000	0.00	0.00	0.00	5.68
1548	1606	2.669434	TCCAAATAAACTAGACGCACGC	59.331	45.455	0.00	0.00	0.00	5.34
1556	1614	7.625469	ACTCTTCTTCCCTCCAAATAAACTAG	58.375	38.462	0.00	0.00	0.00	2.57
1559	1617	8.809468	AATACTCTTCTTCCCTCCAAATAAAC	57.191	34.615	0.00	0.00	0.00	2.01
1759	6971	7.608761	ACTTTCAAAAGTTTGACCACTAGTACA	59.391	33.333	5.98	0.00	46.52	2.90
1797	7011	8.090788	TGGCTAACAATAGTCCTTCTAGAATT	57.909	34.615	5.44	0.00	32.54	2.17
1954	7173	4.801330	TCGTCTTCCTAGCAAAATCAGA	57.199	40.909	0.00	0.00	0.00	3.27
1977	7196	4.220602	GCCAACAAATGATTAACCTCCTGT	59.779	41.667	0.00	0.00	0.00	4.00
2016	7239	2.783379	TGCCATCTATCTCCACTCCT	57.217	50.000	0.00	0.00	0.00	3.69
2055	7278	9.542462	TCAACTTTAATTCTAGTTATCCCATCG	57.458	33.333	5.17	0.00	33.49	3.84
2078	7301	5.637006	AATTAATTACCACGCAGCTTCAA	57.363	34.783	0.00	0.00	0.00	2.69
2435	7836	7.276218	CCAAAACCACATTATAGCATGAAACAG	59.724	37.037	0.00	0.00	0.00	3.16
2437	7838	6.035975	GCCAAAACCACATTATAGCATGAAAC	59.964	38.462	0.00	0.00	0.00	2.78
2515	8504	1.262640	ACCTGCAGTACCTAACGGGG	61.263	60.000	13.81	0.00	40.03	5.73
2523	8512	6.428771	TCAAACACTAATTAACCTGCAGTACC	59.571	38.462	13.81	0.00	0.00	3.34
2554	8543	2.124320	ACCGCACACACCTGCTTT	60.124	55.556	0.00	0.00	34.77	3.51
2589	8578	4.613925	TCCTAGACCATCATCTGATTGC	57.386	45.455	0.00	0.00	31.21	3.56
2682	9884	2.558359	GGACAAAGCAGGCAATTACTGT	59.442	45.455	10.08	0.00	38.22	3.55
2701	9903	1.541118	TGGTGAAGAGCCCATGGGA	60.541	57.895	36.00	9.59	37.50	4.37
2750	9953	7.603024	ACAAAACCAAAGAACATTTACGGAAAA	59.397	29.630	0.00	0.00	0.00	2.29
2754	9957	6.037098	TGACAAAACCAAAGAACATTTACGG	58.963	36.000	0.00	0.00	0.00	4.02
2785	9988	1.514873	CGAATTGCTCCTTTGCGGC	60.515	57.895	0.00	0.00	35.36	6.53
2787	9990	0.734889	ATCCGAATTGCTCCTTTGCG	59.265	50.000	0.00	0.00	35.36	4.85
2814	10017	1.598701	GGCTGGGCATCAGGTTCAAC	61.599	60.000	8.13	0.00	43.54	3.18
2821	10024	2.513204	CGACAGGCTGGGCATCAG	60.513	66.667	20.34	2.37	46.03	2.90
2834	10037	3.057969	AGCTGAAATGATTGGACGACA	57.942	42.857	0.00	0.00	0.00	4.35
2844	10047	5.711506	TGCTTCCATCTTTTAGCTGAAATGA	59.288	36.000	3.89	5.10	36.10	2.57
2882	10086	0.895530	TCCTCGGATCACCAGTGAAC	59.104	55.000	4.31	1.84	43.58	3.18
2921	10125	7.512130	AGAGCAGGAATATGAAACATGTATGA	58.488	34.615	0.00	0.00	0.00	2.15
2925	10129	8.757982	AAATAGAGCAGGAATATGAAACATGT	57.242	30.769	0.00	0.00	0.00	3.21
2977	10181	4.465512	CATCCACGGCTGCAACGC	62.466	66.667	10.05	0.00	34.00	4.84
2979	10183	1.926511	CTTCCATCCACGGCTGCAAC	61.927	60.000	0.50	0.00	0.00	4.17
3006	10210	1.250328	CTGTTGCTGCAAAGGGATCA	58.750	50.000	17.80	8.68	0.00	2.92
3016	10220	2.974698	ACTGACCGCTGTTGCTGC	60.975	61.111	0.00	0.00	36.97	5.25
3017	10221	1.835483	GACACTGACCGCTGTTGCTG	61.835	60.000	0.00	0.00	36.97	4.41
3018	10222	1.595382	GACACTGACCGCTGTTGCT	60.595	57.895	0.00	0.00	36.97	3.91
3019	10223	1.560860	GAGACACTGACCGCTGTTGC	61.561	60.000	0.00	0.00	0.00	4.17
3020	10224	0.249447	TGAGACACTGACCGCTGTTG	60.249	55.000	0.00	0.00	0.00	3.33
3087	10291	2.392821	GATGCTGCACTCACTCTATCG	58.607	52.381	3.57	0.00	0.00	2.92
3178	10382	2.203126	GCTGAAGGGCGAGGGATG	60.203	66.667	0.00	0.00	0.00	3.51
3180	10384	2.927856	TTGCTGAAGGGCGAGGGA	60.928	61.111	0.00	0.00	34.52	4.20
3186	10390	3.365265	CCGTGGTTGCTGAAGGGC	61.365	66.667	0.00	0.00	0.00	5.19
3188	10392	2.594303	TGCCGTGGTTGCTGAAGG	60.594	61.111	0.00	0.00	0.00	3.46
3230	10434	4.368543	GGTGGTCCCCGTCGTCAC	62.369	72.222	0.00	0.00	0.00	3.67
3271	10476	1.154836	GTTCAGTCAAAGCGCGTCG	60.155	57.895	8.43	0.00	0.00	5.12
3283	10488	1.337260	GGAGCAGTGACGATGTTCAGT	60.337	52.381	0.00	0.00	30.27	3.41
3308	10514	2.990479	GTGAAGCGGGAGGGATGT	59.010	61.111	0.00	0.00	0.00	3.06

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.