Multiple sequence alignment - TraesCS7D01G251100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G251100 chr7D 100.000 4748 0 0 1 4748 223835626 223840373 0.000000e+00 8769.0
1 TraesCS7D01G251100 chr7D 96.239 452 15 1 1 450 223821886 223822337 0.000000e+00 739.0
2 TraesCS7D01G251100 chr7D 94.923 453 20 2 1 450 103149844 103150296 0.000000e+00 706.0
3 TraesCS7D01G251100 chr7D 94.923 453 20 2 1 450 436867776 436868228 0.000000e+00 706.0
4 TraesCS7D01G251100 chr7D 94.181 464 23 3 1 460 114777644 114778107 0.000000e+00 704.0
5 TraesCS7D01G251100 chr7D 94.889 450 21 1 4 451 64497778 64497329 0.000000e+00 702.0
6 TraesCS7D01G251100 chr7A 95.618 3355 97 14 449 3790 234523653 234526970 0.000000e+00 5336.0
7 TraesCS7D01G251100 chr7A 92.638 489 31 5 1 485 218075674 218075187 0.000000e+00 699.0
8 TraesCS7D01G251100 chr7A 85.962 634 72 15 4036 4666 234529064 234529683 0.000000e+00 662.0
9 TraesCS7D01G251100 chr7A 93.289 298 19 1 3744 4041 234526954 234527250 5.640000e-119 438.0
10 TraesCS7D01G251100 chr7B 95.175 3378 108 30 621 3975 176244126 176240781 0.000000e+00 5284.0
11 TraesCS7D01G251100 chr7B 86.631 748 74 23 3970 4706 176240604 176239872 0.000000e+00 804.0
12 TraesCS7D01G251100 chr3D 94.967 457 18 4 1 455 262033597 262034050 0.000000e+00 712.0
13 TraesCS7D01G251100 chr2D 94.923 453 20 2 1 450 77289482 77289934 0.000000e+00 706.0
14 TraesCS7D01G251100 chr1D 94.912 452 20 2 3 451 472428156 472427705 0.000000e+00 704.0
15 TraesCS7D01G251100 chr6D 78.648 281 53 6 2931 3206 115314860 115314582 3.780000e-41 180.0
16 TraesCS7D01G251100 chr4B 87.097 155 15 4 449 599 14138550 14138397 2.270000e-38 171.0
17 TraesCS7D01G251100 chr3A 82.667 75 12 1 483 557 91480084 91480157 1.100000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G251100 chr7D 223835626 223840373 4747 False 8769.000000 8769 100.000 1 4748 1 chr7D.!!$F4 4747
1 TraesCS7D01G251100 chr7A 234523653 234529683 6030 False 2145.333333 5336 91.623 449 4666 3 chr7A.!!$F1 4217
2 TraesCS7D01G251100 chr7B 176239872 176244126 4254 True 3044.000000 5284 90.903 621 4706 2 chr7B.!!$R1 4085

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
48 49 0.035056 GGCTAGCACCCAAGACACAT 60.035 55.0 18.24 0.00 0.00 3.21 F
279 280 0.038892 GAGGTGTCGTGCTTTCGGTA 60.039 55.0 0.00 0.00 0.00 4.02 F
419 420 0.104855 GATCCTGCATGTGCGTAGGA 59.895 55.0 14.22 14.22 44.19 2.94 F
420 421 0.541392 ATCCTGCATGTGCGTAGGAA 59.459 50.0 15.41 3.28 43.57 3.36 F
740 746 0.767375 AGGAACTGCAGCCAAGAAGA 59.233 50.0 15.27 0.00 37.18 2.87 F
2304 2331 0.828343 GGGCTCTATGTCCTACGGCT 60.828 60.0 0.00 0.00 37.49 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1374 1399 1.518572 CGTCGTCCTTAATGCCGCT 60.519 57.895 0.00 0.0 0.00 5.52 R
2105 2132 0.167470 GAGGCGTTTCCGTTTTAGCC 59.833 55.000 0.00 0.0 44.45 3.93 R
2304 2331 1.299648 CGAGGATTGCCACCAGGAA 59.700 57.895 0.00 0.0 36.89 3.36 R
3364 3391 3.376935 ATCAGCTTCACCGCCTCCG 62.377 63.158 0.00 0.0 0.00 4.63 R
3621 3648 1.745489 CGGAGGTGCTTAGTTGGGC 60.745 63.158 0.00 0.0 0.00 5.36 R
4454 6528 0.389948 AGGGCGCTACAGAGAAAACG 60.390 55.000 7.64 0.0 0.00 3.60 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.678947 CAAGGCTCAACATATAAATAGAGGG 57.321 40.000 0.00 0.00 0.00 4.30
25 26 6.380079 AGGCTCAACATATAAATAGAGGGG 57.620 41.667 0.00 0.00 0.00 4.79
26 27 5.852250 AGGCTCAACATATAAATAGAGGGGT 59.148 40.000 0.00 0.00 0.00 4.95
27 28 7.023120 AGGCTCAACATATAAATAGAGGGGTA 58.977 38.462 0.00 0.00 0.00 3.69
28 29 7.181125 AGGCTCAACATATAAATAGAGGGGTAG 59.819 40.741 0.00 0.00 0.00 3.18
29 30 7.331791 GCTCAACATATAAATAGAGGGGTAGG 58.668 42.308 0.00 0.00 0.00 3.18
30 31 7.581658 GCTCAACATATAAATAGAGGGGTAGGG 60.582 44.444 0.00 0.00 0.00 3.53
31 32 6.214819 TCAACATATAAATAGAGGGGTAGGGC 59.785 42.308 0.00 0.00 0.00 5.19
32 33 5.928656 ACATATAAATAGAGGGGTAGGGCT 58.071 41.667 0.00 0.00 0.00 5.19
33 34 7.065018 ACATATAAATAGAGGGGTAGGGCTA 57.935 40.000 0.00 0.00 0.00 3.93
34 35 7.133483 ACATATAAATAGAGGGGTAGGGCTAG 58.867 42.308 0.00 0.00 0.00 3.42
35 36 2.328992 AATAGAGGGGTAGGGCTAGC 57.671 55.000 6.04 6.04 0.00 3.42
36 37 1.167943 ATAGAGGGGTAGGGCTAGCA 58.832 55.000 18.24 0.00 35.41 3.49
37 38 0.187851 TAGAGGGGTAGGGCTAGCAC 59.812 60.000 18.24 14.32 37.23 4.40
38 39 2.040779 AGGGGTAGGGCTAGCACC 60.041 66.667 14.92 13.86 37.67 5.01
46 47 4.303257 GGCTAGCACCCAAGACAC 57.697 61.111 18.24 0.00 0.00 3.67
47 48 1.374947 GGCTAGCACCCAAGACACA 59.625 57.895 18.24 0.00 0.00 3.72
48 49 0.035056 GGCTAGCACCCAAGACACAT 60.035 55.000 18.24 0.00 0.00 3.21
49 50 1.373570 GCTAGCACCCAAGACACATC 58.626 55.000 10.63 0.00 0.00 3.06
50 51 1.339055 GCTAGCACCCAAGACACATCA 60.339 52.381 10.63 0.00 0.00 3.07
51 52 2.875672 GCTAGCACCCAAGACACATCAA 60.876 50.000 10.63 0.00 0.00 2.57
52 53 1.901591 AGCACCCAAGACACATCAAG 58.098 50.000 0.00 0.00 0.00 3.02
53 54 1.421268 AGCACCCAAGACACATCAAGA 59.579 47.619 0.00 0.00 0.00 3.02
54 55 2.158623 AGCACCCAAGACACATCAAGAA 60.159 45.455 0.00 0.00 0.00 2.52
55 56 2.622942 GCACCCAAGACACATCAAGAAA 59.377 45.455 0.00 0.00 0.00 2.52
56 57 3.550842 GCACCCAAGACACATCAAGAAAC 60.551 47.826 0.00 0.00 0.00 2.78
57 58 3.631686 CACCCAAGACACATCAAGAAACA 59.368 43.478 0.00 0.00 0.00 2.83
58 59 3.632145 ACCCAAGACACATCAAGAAACAC 59.368 43.478 0.00 0.00 0.00 3.32
59 60 3.004734 CCCAAGACACATCAAGAAACACC 59.995 47.826 0.00 0.00 0.00 4.16
60 61 3.631686 CCAAGACACATCAAGAAACACCA 59.368 43.478 0.00 0.00 0.00 4.17
61 62 4.097741 CCAAGACACATCAAGAAACACCAA 59.902 41.667 0.00 0.00 0.00 3.67
62 63 5.276270 CAAGACACATCAAGAAACACCAAG 58.724 41.667 0.00 0.00 0.00 3.61
63 64 3.316308 AGACACATCAAGAAACACCAAGC 59.684 43.478 0.00 0.00 0.00 4.01
64 65 2.362077 ACACATCAAGAAACACCAAGCC 59.638 45.455 0.00 0.00 0.00 4.35
65 66 1.608590 ACATCAAGAAACACCAAGCCG 59.391 47.619 0.00 0.00 0.00 5.52
66 67 1.608590 CATCAAGAAACACCAAGCCGT 59.391 47.619 0.00 0.00 0.00 5.68
67 68 1.021202 TCAAGAAACACCAAGCCGTG 58.979 50.000 0.00 0.00 39.75 4.94
69 70 0.738389 AAGAAACACCAAGCCGTGTG 59.262 50.000 2.88 0.00 46.19 3.82
70 71 1.299089 GAAACACCAAGCCGTGTGC 60.299 57.895 2.88 0.00 46.19 4.57
71 72 2.677573 GAAACACCAAGCCGTGTGCC 62.678 60.000 2.88 0.00 46.19 5.01
83 84 4.947147 TGTGCCGGCAACCCTGTC 62.947 66.667 34.66 17.90 0.00 3.51
88 89 4.410400 CGGCAACCCTGTCCCCTC 62.410 72.222 0.00 0.00 0.00 4.30
89 90 3.256960 GGCAACCCTGTCCCCTCA 61.257 66.667 0.00 0.00 0.00 3.86
90 91 2.840753 GGCAACCCTGTCCCCTCAA 61.841 63.158 0.00 0.00 0.00 3.02
91 92 1.303643 GCAACCCTGTCCCCTCAAG 60.304 63.158 0.00 0.00 0.00 3.02
92 93 2.069165 GCAACCCTGTCCCCTCAAGT 62.069 60.000 0.00 0.00 0.00 3.16
93 94 0.478507 CAACCCTGTCCCCTCAAGTT 59.521 55.000 0.00 0.00 0.00 2.66
94 95 1.133482 CAACCCTGTCCCCTCAAGTTT 60.133 52.381 0.00 0.00 0.00 2.66
95 96 2.107552 CAACCCTGTCCCCTCAAGTTTA 59.892 50.000 0.00 0.00 0.00 2.01
96 97 2.644151 ACCCTGTCCCCTCAAGTTTAT 58.356 47.619 0.00 0.00 0.00 1.40
97 98 2.576648 ACCCTGTCCCCTCAAGTTTATC 59.423 50.000 0.00 0.00 0.00 1.75
98 99 2.092375 CCCTGTCCCCTCAAGTTTATCC 60.092 54.545 0.00 0.00 0.00 2.59
99 100 2.846827 CCTGTCCCCTCAAGTTTATCCT 59.153 50.000 0.00 0.00 0.00 3.24
100 101 3.118223 CCTGTCCCCTCAAGTTTATCCTC 60.118 52.174 0.00 0.00 0.00 3.71
101 102 2.844348 TGTCCCCTCAAGTTTATCCTCC 59.156 50.000 0.00 0.00 0.00 4.30
102 103 2.116238 TCCCCTCAAGTTTATCCTCCG 58.884 52.381 0.00 0.00 0.00 4.63
103 104 1.838077 CCCCTCAAGTTTATCCTCCGT 59.162 52.381 0.00 0.00 0.00 4.69
104 105 2.158943 CCCCTCAAGTTTATCCTCCGTC 60.159 54.545 0.00 0.00 0.00 4.79
105 106 2.500098 CCCTCAAGTTTATCCTCCGTCA 59.500 50.000 0.00 0.00 0.00 4.35
106 107 3.134804 CCCTCAAGTTTATCCTCCGTCAT 59.865 47.826 0.00 0.00 0.00 3.06
107 108 4.344102 CCCTCAAGTTTATCCTCCGTCATA 59.656 45.833 0.00 0.00 0.00 2.15
108 109 5.509840 CCCTCAAGTTTATCCTCCGTCATAG 60.510 48.000 0.00 0.00 0.00 2.23
109 110 5.069251 CCTCAAGTTTATCCTCCGTCATAGT 59.931 44.000 0.00 0.00 0.00 2.12
110 111 6.407074 CCTCAAGTTTATCCTCCGTCATAGTT 60.407 42.308 0.00 0.00 0.00 2.24
111 112 6.942976 TCAAGTTTATCCTCCGTCATAGTTT 58.057 36.000 0.00 0.00 0.00 2.66
112 113 7.039882 TCAAGTTTATCCTCCGTCATAGTTTC 58.960 38.462 0.00 0.00 0.00 2.78
113 114 6.793505 AGTTTATCCTCCGTCATAGTTTCT 57.206 37.500 0.00 0.00 0.00 2.52
114 115 6.574350 AGTTTATCCTCCGTCATAGTTTCTG 58.426 40.000 0.00 0.00 0.00 3.02
115 116 6.154706 AGTTTATCCTCCGTCATAGTTTCTGT 59.845 38.462 0.00 0.00 0.00 3.41
116 117 7.341256 AGTTTATCCTCCGTCATAGTTTCTGTA 59.659 37.037 0.00 0.00 0.00 2.74
117 118 5.776173 ATCCTCCGTCATAGTTTCTGTAG 57.224 43.478 0.00 0.00 0.00 2.74
118 119 4.597004 TCCTCCGTCATAGTTTCTGTAGT 58.403 43.478 0.00 0.00 0.00 2.73
119 120 4.398358 TCCTCCGTCATAGTTTCTGTAGTG 59.602 45.833 0.00 0.00 0.00 2.74
120 121 4.106029 TCCGTCATAGTTTCTGTAGTGC 57.894 45.455 0.00 0.00 0.00 4.40
121 122 3.762288 TCCGTCATAGTTTCTGTAGTGCT 59.238 43.478 0.00 0.00 0.00 4.40
122 123 4.219944 TCCGTCATAGTTTCTGTAGTGCTT 59.780 41.667 0.00 0.00 0.00 3.91
123 124 4.327357 CCGTCATAGTTTCTGTAGTGCTTG 59.673 45.833 0.00 0.00 0.00 4.01
124 125 4.327357 CGTCATAGTTTCTGTAGTGCTTGG 59.673 45.833 0.00 0.00 0.00 3.61
125 126 5.238583 GTCATAGTTTCTGTAGTGCTTGGT 58.761 41.667 0.00 0.00 0.00 3.67
126 127 5.120830 GTCATAGTTTCTGTAGTGCTTGGTG 59.879 44.000 0.00 0.00 0.00 4.17
127 128 3.838244 AGTTTCTGTAGTGCTTGGTGA 57.162 42.857 0.00 0.00 0.00 4.02
128 129 4.150897 AGTTTCTGTAGTGCTTGGTGAA 57.849 40.909 0.00 0.00 0.00 3.18
129 130 4.130118 AGTTTCTGTAGTGCTTGGTGAAG 58.870 43.478 0.00 0.00 0.00 3.02
137 138 3.058160 CTTGGTGAAGCCCTGCGG 61.058 66.667 0.00 0.00 36.04 5.69
138 139 3.551496 CTTGGTGAAGCCCTGCGGA 62.551 63.158 0.00 0.00 36.04 5.54
139 140 3.126703 TTGGTGAAGCCCTGCGGAA 62.127 57.895 0.00 0.00 36.04 4.30
140 141 2.282180 GGTGAAGCCCTGCGGAAA 60.282 61.111 0.00 0.00 0.00 3.13
141 142 1.678970 GGTGAAGCCCTGCGGAAAT 60.679 57.895 0.00 0.00 0.00 2.17
142 143 1.250840 GGTGAAGCCCTGCGGAAATT 61.251 55.000 0.00 0.00 0.00 1.82
143 144 0.109132 GTGAAGCCCTGCGGAAATTG 60.109 55.000 0.00 0.00 0.00 2.32
144 145 0.539438 TGAAGCCCTGCGGAAATTGT 60.539 50.000 0.00 0.00 0.00 2.71
145 146 0.603065 GAAGCCCTGCGGAAATTGTT 59.397 50.000 0.00 0.00 0.00 2.83
146 147 0.603065 AAGCCCTGCGGAAATTGTTC 59.397 50.000 0.00 0.00 0.00 3.18
147 148 0.251341 AGCCCTGCGGAAATTGTTCT 60.251 50.000 0.00 0.00 33.92 3.01
148 149 0.603065 GCCCTGCGGAAATTGTTCTT 59.397 50.000 0.00 0.00 33.92 2.52
149 150 1.402852 GCCCTGCGGAAATTGTTCTTC 60.403 52.381 0.00 0.00 33.92 2.87
150 151 1.885887 CCCTGCGGAAATTGTTCTTCA 59.114 47.619 0.00 0.00 33.92 3.02
151 152 2.351738 CCCTGCGGAAATTGTTCTTCAC 60.352 50.000 0.00 0.00 33.92 3.18
152 153 2.351738 CCTGCGGAAATTGTTCTTCACC 60.352 50.000 0.00 0.00 33.92 4.02
153 154 2.293122 CTGCGGAAATTGTTCTTCACCA 59.707 45.455 0.00 0.00 33.92 4.17
154 155 2.690497 TGCGGAAATTGTTCTTCACCAA 59.310 40.909 0.00 0.00 33.92 3.67
155 156 3.049912 GCGGAAATTGTTCTTCACCAAC 58.950 45.455 0.00 0.00 33.92 3.77
156 157 3.490078 GCGGAAATTGTTCTTCACCAACA 60.490 43.478 0.00 0.00 33.92 3.33
157 158 4.041723 CGGAAATTGTTCTTCACCAACAC 58.958 43.478 0.00 0.00 33.42 3.32
158 159 4.368315 GGAAATTGTTCTTCACCAACACC 58.632 43.478 0.00 0.00 33.42 4.16
159 160 3.708563 AATTGTTCTTCACCAACACCG 57.291 42.857 0.00 0.00 33.42 4.94
160 161 2.116827 TTGTTCTTCACCAACACCGT 57.883 45.000 0.00 0.00 33.42 4.83
161 162 1.658994 TGTTCTTCACCAACACCGTC 58.341 50.000 0.00 0.00 0.00 4.79
162 163 1.066071 TGTTCTTCACCAACACCGTCA 60.066 47.619 0.00 0.00 0.00 4.35
163 164 1.329599 GTTCTTCACCAACACCGTCAC 59.670 52.381 0.00 0.00 0.00 3.67
164 165 0.179067 TCTTCACCAACACCGTCACC 60.179 55.000 0.00 0.00 0.00 4.02
165 166 0.462937 CTTCACCAACACCGTCACCA 60.463 55.000 0.00 0.00 0.00 4.17
166 167 0.745128 TTCACCAACACCGTCACCAC 60.745 55.000 0.00 0.00 0.00 4.16
167 168 2.202960 ACCAACACCGTCACCACG 60.203 61.111 0.00 0.00 46.29 4.94
168 169 3.645975 CCAACACCGTCACCACGC 61.646 66.667 0.00 0.00 45.29 5.34
169 170 3.645975 CAACACCGTCACCACGCC 61.646 66.667 0.00 0.00 45.29 5.68
187 188 3.112709 GTCGTGCTGCCGGAACTC 61.113 66.667 5.05 0.00 0.00 3.01
188 189 3.611674 TCGTGCTGCCGGAACTCA 61.612 61.111 5.05 0.00 0.00 3.41
189 190 2.434884 CGTGCTGCCGGAACTCAT 60.435 61.111 5.05 0.00 0.00 2.90
190 191 2.456119 CGTGCTGCCGGAACTCATC 61.456 63.158 5.05 0.00 0.00 2.92
191 192 1.078848 GTGCTGCCGGAACTCATCT 60.079 57.895 5.05 0.00 0.00 2.90
192 193 0.175760 GTGCTGCCGGAACTCATCTA 59.824 55.000 5.05 0.00 0.00 1.98
193 194 0.175760 TGCTGCCGGAACTCATCTAC 59.824 55.000 5.05 0.00 0.00 2.59
194 195 0.461961 GCTGCCGGAACTCATCTACT 59.538 55.000 5.05 0.00 0.00 2.57
195 196 1.681793 GCTGCCGGAACTCATCTACTA 59.318 52.381 5.05 0.00 0.00 1.82
196 197 2.544069 GCTGCCGGAACTCATCTACTAC 60.544 54.545 5.05 0.00 0.00 2.73
197 198 2.952978 CTGCCGGAACTCATCTACTACT 59.047 50.000 5.05 0.00 0.00 2.57
198 199 3.362706 TGCCGGAACTCATCTACTACTT 58.637 45.455 5.05 0.00 0.00 2.24
199 200 3.380637 TGCCGGAACTCATCTACTACTTC 59.619 47.826 5.05 0.00 0.00 3.01
200 201 3.548415 GCCGGAACTCATCTACTACTTCG 60.548 52.174 5.05 0.00 0.00 3.79
201 202 3.548415 CCGGAACTCATCTACTACTTCGC 60.548 52.174 0.00 0.00 0.00 4.70
202 203 3.548415 CGGAACTCATCTACTACTTCGCC 60.548 52.174 0.00 0.00 0.00 5.54
203 204 3.243468 GGAACTCATCTACTACTTCGCCC 60.243 52.174 0.00 0.00 0.00 6.13
204 205 1.948145 ACTCATCTACTACTTCGCCCG 59.052 52.381 0.00 0.00 0.00 6.13
205 206 1.948145 CTCATCTACTACTTCGCCCGT 59.052 52.381 0.00 0.00 0.00 5.28
206 207 1.945394 TCATCTACTACTTCGCCCGTC 59.055 52.381 0.00 0.00 0.00 4.79
207 208 1.948145 CATCTACTACTTCGCCCGTCT 59.052 52.381 0.00 0.00 0.00 4.18
208 209 2.119801 TCTACTACTTCGCCCGTCTT 57.880 50.000 0.00 0.00 0.00 3.01
209 210 1.741706 TCTACTACTTCGCCCGTCTTG 59.258 52.381 0.00 0.00 0.00 3.02
210 211 0.171903 TACTACTTCGCCCGTCTTGC 59.828 55.000 0.00 0.00 0.00 4.01
211 212 1.215647 CTACTTCGCCCGTCTTGCT 59.784 57.895 0.00 0.00 0.00 3.91
212 213 1.078759 CTACTTCGCCCGTCTTGCTG 61.079 60.000 0.00 0.00 0.00 4.41
213 214 2.501223 TACTTCGCCCGTCTTGCTGG 62.501 60.000 0.00 0.00 0.00 4.85
214 215 3.589654 CTTCGCCCGTCTTGCTGGA 62.590 63.158 0.00 0.00 0.00 3.86
215 216 2.859273 CTTCGCCCGTCTTGCTGGAT 62.859 60.000 0.00 0.00 0.00 3.41
216 217 2.852495 TTCGCCCGTCTTGCTGGATC 62.852 60.000 0.00 0.00 0.00 3.36
217 218 2.268920 GCCCGTCTTGCTGGATCA 59.731 61.111 0.00 0.00 0.00 2.92
218 219 1.377202 GCCCGTCTTGCTGGATCAA 60.377 57.895 0.00 0.00 0.00 2.57
219 220 1.372087 GCCCGTCTTGCTGGATCAAG 61.372 60.000 0.00 0.00 43.53 3.02
224 225 2.119801 TCTTGCTGGATCAAGAAGGC 57.880 50.000 0.00 0.00 46.56 4.35
225 226 0.731417 CTTGCTGGATCAAGAAGGCG 59.269 55.000 0.00 0.00 44.61 5.52
226 227 0.324614 TTGCTGGATCAAGAAGGCGA 59.675 50.000 0.00 0.00 0.00 5.54
227 228 0.107993 TGCTGGATCAAGAAGGCGAG 60.108 55.000 0.00 0.00 0.00 5.03
228 229 0.813210 GCTGGATCAAGAAGGCGAGG 60.813 60.000 0.00 0.00 0.00 4.63
229 230 0.826715 CTGGATCAAGAAGGCGAGGA 59.173 55.000 0.00 0.00 0.00 3.71
230 231 0.537188 TGGATCAAGAAGGCGAGGAC 59.463 55.000 0.00 0.00 0.00 3.85
231 232 0.528684 GGATCAAGAAGGCGAGGACG 60.529 60.000 0.00 0.00 42.93 4.79
232 233 0.173708 GATCAAGAAGGCGAGGACGT 59.826 55.000 0.00 0.00 41.98 4.34
233 234 0.173708 ATCAAGAAGGCGAGGACGTC 59.826 55.000 7.13 7.13 45.02 4.34
239 240 4.477975 GGCGAGGACGTCACCGAG 62.478 72.222 25.81 11.00 44.03 4.63
241 242 4.477975 CGAGGACGTCACCGAGCC 62.478 72.222 18.91 0.00 37.88 4.70
242 243 4.477975 GAGGACGTCACCGAGCCG 62.478 72.222 18.91 0.00 37.22 5.52
244 245 4.047059 GGACGTCACCGAGCCGAA 62.047 66.667 18.91 0.00 37.88 4.30
245 246 2.804090 GACGTCACCGAGCCGAAC 60.804 66.667 11.55 0.00 37.88 3.95
246 247 4.695231 ACGTCACCGAGCCGAACG 62.695 66.667 11.96 11.96 37.88 3.95
247 248 4.695231 CGTCACCGAGCCGAACGT 62.695 66.667 0.00 0.00 35.63 3.99
248 249 3.103911 GTCACCGAGCCGAACGTG 61.104 66.667 0.00 0.00 0.00 4.49
249 250 3.598715 TCACCGAGCCGAACGTGT 61.599 61.111 0.00 0.00 0.00 4.49
250 251 3.403057 CACCGAGCCGAACGTGTG 61.403 66.667 0.00 0.00 0.00 3.82
253 254 3.767230 CGAGCCGAACGTGTGCAG 61.767 66.667 6.93 0.00 0.00 4.41
254 255 2.355837 GAGCCGAACGTGTGCAGA 60.356 61.111 6.93 0.00 0.00 4.26
255 256 1.954146 GAGCCGAACGTGTGCAGAA 60.954 57.895 6.93 0.00 0.00 3.02
256 257 2.159272 GAGCCGAACGTGTGCAGAAC 62.159 60.000 6.93 0.00 0.00 3.01
257 258 2.244651 GCCGAACGTGTGCAGAACT 61.245 57.895 0.00 0.00 0.00 3.01
258 259 1.853319 CCGAACGTGTGCAGAACTC 59.147 57.895 0.00 0.00 0.00 3.01
262 263 3.848142 CGTGTGCAGAACTCGGAG 58.152 61.111 2.83 2.83 41.05 4.63
263 264 1.734477 CGTGTGCAGAACTCGGAGG 60.734 63.158 10.23 0.00 41.05 4.30
264 265 1.367840 GTGTGCAGAACTCGGAGGT 59.632 57.895 10.23 1.51 0.00 3.85
265 266 0.946221 GTGTGCAGAACTCGGAGGTG 60.946 60.000 10.23 5.07 0.00 4.00
266 267 1.367840 GTGCAGAACTCGGAGGTGT 59.632 57.895 10.23 0.00 0.00 4.16
267 268 0.667792 GTGCAGAACTCGGAGGTGTC 60.668 60.000 10.23 3.93 0.00 3.67
268 269 1.444553 GCAGAACTCGGAGGTGTCG 60.445 63.158 10.23 0.00 0.00 4.35
269 270 1.957562 CAGAACTCGGAGGTGTCGT 59.042 57.895 10.23 0.00 0.00 4.34
270 271 0.387367 CAGAACTCGGAGGTGTCGTG 60.387 60.000 10.23 0.00 0.00 4.35
271 272 1.733399 GAACTCGGAGGTGTCGTGC 60.733 63.158 10.23 0.00 0.00 5.34
272 273 2.143594 GAACTCGGAGGTGTCGTGCT 62.144 60.000 10.23 0.00 0.00 4.40
273 274 1.745320 AACTCGGAGGTGTCGTGCTT 61.745 55.000 10.23 0.00 0.00 3.91
274 275 1.006102 CTCGGAGGTGTCGTGCTTT 60.006 57.895 0.00 0.00 0.00 3.51
275 276 1.006571 TCGGAGGTGTCGTGCTTTC 60.007 57.895 0.00 0.00 0.00 2.62
276 277 2.372690 CGGAGGTGTCGTGCTTTCG 61.373 63.158 0.00 0.00 0.00 3.46
277 278 2.027625 GGAGGTGTCGTGCTTTCGG 61.028 63.158 0.00 0.00 0.00 4.30
278 279 1.300697 GAGGTGTCGTGCTTTCGGT 60.301 57.895 0.00 0.00 0.00 4.69
279 280 0.038892 GAGGTGTCGTGCTTTCGGTA 60.039 55.000 0.00 0.00 0.00 4.02
280 281 0.319297 AGGTGTCGTGCTTTCGGTAC 60.319 55.000 0.00 0.00 0.00 3.34
281 282 0.319297 GGTGTCGTGCTTTCGGTACT 60.319 55.000 0.00 0.00 0.00 2.73
282 283 1.494824 GTGTCGTGCTTTCGGTACTT 58.505 50.000 0.00 0.00 0.00 2.24
283 284 1.191647 GTGTCGTGCTTTCGGTACTTG 59.808 52.381 0.00 0.00 0.00 3.16
284 285 0.788391 GTCGTGCTTTCGGTACTTGG 59.212 55.000 0.00 0.00 0.00 3.61
285 286 0.675083 TCGTGCTTTCGGTACTTGGA 59.325 50.000 0.00 0.00 0.00 3.53
286 287 1.274167 TCGTGCTTTCGGTACTTGGAT 59.726 47.619 0.00 0.00 0.00 3.41
287 288 1.659098 CGTGCTTTCGGTACTTGGATC 59.341 52.381 0.00 0.00 0.00 3.36
288 289 1.659098 GTGCTTTCGGTACTTGGATCG 59.341 52.381 0.00 0.00 0.00 3.69
289 290 1.287425 GCTTTCGGTACTTGGATCGG 58.713 55.000 0.00 0.00 0.00 4.18
290 291 1.405121 GCTTTCGGTACTTGGATCGGT 60.405 52.381 0.00 0.00 0.00 4.69
291 292 2.537401 CTTTCGGTACTTGGATCGGTC 58.463 52.381 0.00 0.00 0.00 4.79
292 293 0.452987 TTCGGTACTTGGATCGGTCG 59.547 55.000 0.00 0.00 0.00 4.79
293 294 1.065273 CGGTACTTGGATCGGTCGG 59.935 63.158 0.00 0.00 0.00 4.79
294 295 1.227176 GGTACTTGGATCGGTCGGC 60.227 63.158 0.00 0.00 0.00 5.54
295 296 1.588139 GTACTTGGATCGGTCGGCG 60.588 63.158 0.00 0.00 0.00 6.46
296 297 2.048023 TACTTGGATCGGTCGGCGT 61.048 57.895 6.85 0.00 0.00 5.68
297 298 2.274232 TACTTGGATCGGTCGGCGTG 62.274 60.000 6.85 0.00 0.00 5.34
298 299 3.350909 CTTGGATCGGTCGGCGTGA 62.351 63.158 6.85 4.10 0.00 4.35
299 300 2.829043 CTTGGATCGGTCGGCGTGAA 62.829 60.000 6.85 0.00 0.00 3.18
300 301 2.582498 GGATCGGTCGGCGTGAAG 60.582 66.667 6.85 0.00 0.00 3.02
301 302 2.488355 GATCGGTCGGCGTGAAGA 59.512 61.111 6.85 3.10 0.00 2.87
302 303 1.872679 GATCGGTCGGCGTGAAGAC 60.873 63.158 6.85 0.00 36.70 3.01
313 314 2.861763 CGTGAAGACGTACGACTACA 57.138 50.000 24.41 13.28 42.54 2.74
314 315 3.380486 CGTGAAGACGTACGACTACAT 57.620 47.619 24.41 6.17 42.54 2.29
315 316 3.340552 CGTGAAGACGTACGACTACATC 58.659 50.000 24.41 15.62 42.54 3.06
316 317 3.181527 CGTGAAGACGTACGACTACATCA 60.182 47.826 24.41 18.00 42.54 3.07
317 318 4.667415 CGTGAAGACGTACGACTACATCAA 60.667 45.833 24.41 4.49 42.54 2.57
318 319 4.552660 GTGAAGACGTACGACTACATCAAC 59.447 45.833 24.41 11.90 0.00 3.18
319 320 3.754188 AGACGTACGACTACATCAACC 57.246 47.619 24.41 0.00 0.00 3.77
320 321 2.094894 AGACGTACGACTACATCAACCG 59.905 50.000 24.41 0.00 0.00 4.44
321 322 1.186030 CGTACGACTACATCAACCGC 58.814 55.000 10.44 0.00 0.00 5.68
322 323 1.186030 GTACGACTACATCAACCGCG 58.814 55.000 0.00 0.00 0.00 6.46
323 324 0.804364 TACGACTACATCAACCGCGT 59.196 50.000 4.92 0.00 0.00 6.01
324 325 0.038892 ACGACTACATCAACCGCGTT 60.039 50.000 4.92 0.00 0.00 4.84
325 326 0.365523 CGACTACATCAACCGCGTTG 59.634 55.000 4.92 10.14 43.99 4.10
340 341 2.555220 CGTTGATATAACGCTTCCGC 57.445 50.000 0.00 0.00 36.82 5.54
341 342 2.124903 CGTTGATATAACGCTTCCGCT 58.875 47.619 0.00 0.00 36.82 5.52
342 343 2.538449 CGTTGATATAACGCTTCCGCTT 59.462 45.455 0.00 0.00 36.82 4.68
343 344 3.732219 CGTTGATATAACGCTTCCGCTTA 59.268 43.478 0.00 0.00 36.82 3.09
344 345 4.374707 CGTTGATATAACGCTTCCGCTTAC 60.375 45.833 0.00 0.00 36.82 2.34
345 346 3.302555 TGATATAACGCTTCCGCTTACG 58.697 45.455 0.00 0.00 38.22 3.18
359 360 4.131202 CGCTTACGGTCTATGAGAGTAC 57.869 50.000 0.00 0.00 34.97 2.73
360 361 3.362791 CGCTTACGGTCTATGAGAGTACG 60.363 52.174 0.00 0.00 34.97 3.67
361 362 3.559242 GCTTACGGTCTATGAGAGTACGT 59.441 47.826 0.00 0.00 40.13 3.57
362 363 4.747108 GCTTACGGTCTATGAGAGTACGTA 59.253 45.833 0.00 0.00 38.70 3.57
363 364 5.107530 GCTTACGGTCTATGAGAGTACGTAG 60.108 48.000 0.00 0.00 39.81 3.51
364 365 4.662468 ACGGTCTATGAGAGTACGTAGA 57.338 45.455 0.00 0.00 37.03 2.59
375 376 4.506758 AGAGTACGTAGACAACTCTCTCC 58.493 47.826 11.32 0.00 45.22 3.71
376 377 3.608796 AGTACGTAGACAACTCTCTCCC 58.391 50.000 0.00 0.00 0.00 4.30
377 378 1.836802 ACGTAGACAACTCTCTCCCC 58.163 55.000 0.00 0.00 0.00 4.81
378 379 1.355043 ACGTAGACAACTCTCTCCCCT 59.645 52.381 0.00 0.00 0.00 4.79
379 380 2.018515 CGTAGACAACTCTCTCCCCTC 58.981 57.143 0.00 0.00 0.00 4.30
380 381 2.356330 CGTAGACAACTCTCTCCCCTCT 60.356 54.545 0.00 0.00 0.00 3.69
381 382 2.525105 AGACAACTCTCTCCCCTCTC 57.475 55.000 0.00 0.00 0.00 3.20
382 383 1.099689 GACAACTCTCTCCCCTCTCG 58.900 60.000 0.00 0.00 0.00 4.04
383 384 0.406361 ACAACTCTCTCCCCTCTCGT 59.594 55.000 0.00 0.00 0.00 4.18
384 385 1.203075 ACAACTCTCTCCCCTCTCGTT 60.203 52.381 0.00 0.00 0.00 3.85
385 386 2.041350 ACAACTCTCTCCCCTCTCGTTA 59.959 50.000 0.00 0.00 0.00 3.18
386 387 3.090037 CAACTCTCTCCCCTCTCGTTAA 58.910 50.000 0.00 0.00 0.00 2.01
387 388 3.673543 ACTCTCTCCCCTCTCGTTAAT 57.326 47.619 0.00 0.00 0.00 1.40
388 389 4.792513 ACTCTCTCCCCTCTCGTTAATA 57.207 45.455 0.00 0.00 0.00 0.98
389 390 5.327737 ACTCTCTCCCCTCTCGTTAATAT 57.672 43.478 0.00 0.00 0.00 1.28
390 391 5.074115 ACTCTCTCCCCTCTCGTTAATATG 58.926 45.833 0.00 0.00 0.00 1.78
391 392 3.827302 TCTCTCCCCTCTCGTTAATATGC 59.173 47.826 0.00 0.00 0.00 3.14
392 393 3.572642 TCTCCCCTCTCGTTAATATGCA 58.427 45.455 0.00 0.00 0.00 3.96
393 394 4.160329 TCTCCCCTCTCGTTAATATGCAT 58.840 43.478 3.79 3.79 0.00 3.96
394 395 4.220821 TCTCCCCTCTCGTTAATATGCATC 59.779 45.833 0.19 0.00 0.00 3.91
395 396 3.901222 TCCCCTCTCGTTAATATGCATCA 59.099 43.478 0.19 0.00 0.00 3.07
396 397 3.997021 CCCCTCTCGTTAATATGCATCAC 59.003 47.826 0.19 0.00 0.00 3.06
397 398 3.997021 CCCTCTCGTTAATATGCATCACC 59.003 47.826 0.19 0.00 0.00 4.02
398 399 4.503123 CCCTCTCGTTAATATGCATCACCA 60.503 45.833 0.19 0.00 0.00 4.17
399 400 5.240891 CCTCTCGTTAATATGCATCACCAT 58.759 41.667 0.19 0.00 0.00 3.55
400 401 5.121298 CCTCTCGTTAATATGCATCACCATG 59.879 44.000 0.19 0.00 0.00 3.66
401 402 5.852827 TCTCGTTAATATGCATCACCATGA 58.147 37.500 0.19 0.00 30.57 3.07
402 403 6.466812 TCTCGTTAATATGCATCACCATGAT 58.533 36.000 0.19 0.00 37.65 2.45
403 404 6.591448 TCTCGTTAATATGCATCACCATGATC 59.409 38.462 0.19 0.00 34.28 2.92
404 405 5.643348 TCGTTAATATGCATCACCATGATCC 59.357 40.000 0.19 0.00 34.28 3.36
405 406 5.645067 CGTTAATATGCATCACCATGATCCT 59.355 40.000 0.19 0.00 34.28 3.24
406 407 6.402875 CGTTAATATGCATCACCATGATCCTG 60.403 42.308 0.19 0.00 34.28 3.86
407 408 1.617322 ATGCATCACCATGATCCTGC 58.383 50.000 0.00 0.00 34.28 4.85
408 409 0.256464 TGCATCACCATGATCCTGCA 59.744 50.000 0.00 1.39 37.51 4.41
409 410 1.133606 TGCATCACCATGATCCTGCAT 60.134 47.619 0.00 0.00 35.67 3.96
410 411 1.269723 GCATCACCATGATCCTGCATG 59.730 52.381 0.00 0.00 44.05 4.06
411 412 2.583143 CATCACCATGATCCTGCATGT 58.417 47.619 0.00 0.00 43.16 3.21
412 413 2.047002 TCACCATGATCCTGCATGTG 57.953 50.000 0.00 0.00 43.16 3.21
413 414 0.384309 CACCATGATCCTGCATGTGC 59.616 55.000 0.00 0.00 43.16 4.57
414 415 1.099295 ACCATGATCCTGCATGTGCG 61.099 55.000 0.00 0.00 43.16 5.34
415 416 1.099295 CCATGATCCTGCATGTGCGT 61.099 55.000 0.00 0.00 43.16 5.24
416 417 1.585297 CATGATCCTGCATGTGCGTA 58.415 50.000 0.01 0.00 45.83 4.42
417 418 1.529865 CATGATCCTGCATGTGCGTAG 59.470 52.381 0.01 0.00 45.83 3.51
418 419 0.179076 TGATCCTGCATGTGCGTAGG 60.179 55.000 5.29 5.29 45.83 3.18
419 420 0.104855 GATCCTGCATGTGCGTAGGA 59.895 55.000 14.22 14.22 44.19 2.94
420 421 0.541392 ATCCTGCATGTGCGTAGGAA 59.459 50.000 15.41 3.28 43.57 3.36
421 422 0.541392 TCCTGCATGTGCGTAGGAAT 59.459 50.000 10.61 0.00 45.83 3.01
422 423 1.065491 TCCTGCATGTGCGTAGGAATT 60.065 47.619 10.61 0.00 45.83 2.17
423 424 1.745087 CCTGCATGTGCGTAGGAATTT 59.255 47.619 5.66 0.00 45.83 1.82
424 425 2.164219 CCTGCATGTGCGTAGGAATTTT 59.836 45.455 5.66 0.00 45.83 1.82
425 426 3.367292 CCTGCATGTGCGTAGGAATTTTT 60.367 43.478 5.66 0.00 45.83 1.94
517 518 5.557891 TTTGAAACAGCCAACCAAATTTG 57.442 34.783 11.40 11.40 0.00 2.32
520 521 3.902881 AACAGCCAACCAAATTTGTGA 57.097 38.095 16.73 0.00 0.00 3.58
531 533 8.658609 CCAACCAAATTTGTGATAGCATTTAAG 58.341 33.333 16.73 0.00 0.00 1.85
532 534 7.832503 ACCAAATTTGTGATAGCATTTAAGC 57.167 32.000 16.73 0.00 0.00 3.09
535 537 8.719648 CCAAATTTGTGATAGCATTTAAGCAAA 58.280 29.630 16.73 0.00 36.85 3.68
577 582 2.439409 TGCAGACATAGCTTGCAATGT 58.561 42.857 7.55 3.51 39.00 2.71
584 589 3.691118 ACATAGCTTGCAATGTGGTAGTG 59.309 43.478 0.00 2.74 35.06 2.74
599 604 8.662781 ATGTGGTAGTGTTTTGCTATATACTG 57.337 34.615 0.00 0.00 0.00 2.74
600 605 7.045416 TGTGGTAGTGTTTTGCTATATACTGG 58.955 38.462 0.00 0.00 0.00 4.00
605 610 4.211374 GTGTTTTGCTATATACTGGAGCCG 59.789 45.833 0.00 0.00 35.24 5.52
647 652 3.052082 ACCACGAGCTGCATGCAC 61.052 61.111 18.46 13.93 45.94 4.57
659 664 3.305964 CTGCATGCACAGAAAAGAAGTG 58.694 45.455 18.46 0.00 40.25 3.16
661 666 3.004002 TGCATGCACAGAAAAGAAGTGAG 59.996 43.478 18.46 0.00 35.33 3.51
662 667 3.004106 GCATGCACAGAAAAGAAGTGAGT 59.996 43.478 14.21 0.00 35.33 3.41
663 668 4.534168 CATGCACAGAAAAGAAGTGAGTG 58.466 43.478 0.00 0.00 35.33 3.51
670 675 4.518211 CAGAAAAGAAGTGAGTGAGCCAAT 59.482 41.667 0.00 0.00 0.00 3.16
730 736 4.522789 GTCCCAATTTTTAGAGGAACTGCA 59.477 41.667 0.00 0.00 41.55 4.41
740 746 0.767375 AGGAACTGCAGCCAAGAAGA 59.233 50.000 15.27 0.00 37.18 2.87
788 795 1.459450 GGATGCTAAGGCCAACGAAA 58.541 50.000 5.01 0.00 37.74 3.46
890 910 3.536570 GAGACCTTGGTCTATTCTTGGC 58.463 50.000 20.86 4.06 33.21 4.52
892 912 1.065418 ACCTTGGTCTATTCTTGGCCG 60.065 52.381 0.00 0.00 0.00 6.13
1081 1106 2.573689 GCGTTCCTCTCGACGACG 60.574 66.667 0.00 0.00 41.53 5.12
1271 1296 2.185350 CGCCTCTTGTGGATCGCT 59.815 61.111 0.00 0.00 0.00 4.93
1748 1773 1.580066 ATTTCTCCGGCCCAATCCCA 61.580 55.000 0.00 0.00 0.00 4.37
1790 1815 2.113433 GCTCATGGACCTGCTGCTG 61.113 63.158 0.00 0.00 0.00 4.41
1983 2009 3.947841 TTGGTGCTGCAACGTCGC 61.948 61.111 13.71 0.00 0.00 5.19
2049 2076 2.353011 GCAGGCAATAAGAAGCTTTGCA 60.353 45.455 18.92 0.48 45.80 4.08
2304 2331 0.828343 GGGCTCTATGTCCTACGGCT 60.828 60.000 0.00 0.00 37.49 5.52
3701 3742 5.918608 TGATCTGCACTCTACCTTAATTCC 58.081 41.667 0.00 0.00 0.00 3.01
3718 3759 3.719268 TTCCATGTTCAGTGGTAGCAT 57.281 42.857 0.00 0.00 37.96 3.79
3800 3870 9.692325 AGTTCTCCATCTTTAGCTAATTGATTT 57.308 29.630 7.08 0.00 0.00 2.17
3833 3904 5.348179 GTCTCAGTGTTCATCTGATGTTCTG 59.652 44.000 16.66 17.51 40.46 3.02
3835 3906 5.233225 TCAGTGTTCATCTGATGTTCTGTC 58.767 41.667 16.66 5.26 37.07 3.51
3916 3987 6.096141 TCCTGTTCACAGTTGCAAAATTTAGA 59.904 34.615 0.00 0.00 42.27 2.10
3940 4011 9.638176 AGAGCCTTTTGATTCACATAATTCTAT 57.362 29.630 0.00 0.00 0.00 1.98
3963 4034 0.968405 GATGGCCAGCAGGAAAAACA 59.032 50.000 18.08 0.00 36.89 2.83
3968 4039 2.626840 GCCAGCAGGAAAAACACAAAA 58.373 42.857 0.00 0.00 36.89 2.44
4068 6140 6.983906 AGAATTCTTTCCAACAGGTTTGAT 57.016 33.333 0.88 0.00 31.84 2.57
4074 6146 4.301072 TTCCAACAGGTTTGATAGGAGG 57.699 45.455 0.00 0.00 0.00 4.30
4075 6147 3.526899 TCCAACAGGTTTGATAGGAGGA 58.473 45.455 0.00 0.00 0.00 3.71
4098 6171 0.673644 AAAACTCCTCCCATCACGCG 60.674 55.000 3.53 3.53 0.00 6.01
4100 6173 3.461773 CTCCTCCCATCACGCGGT 61.462 66.667 12.47 0.00 0.00 5.68
4101 6174 3.432051 CTCCTCCCATCACGCGGTC 62.432 68.421 12.47 0.00 0.00 4.79
4123 6196 1.075970 CGGGAGGGATCTCTCACCA 60.076 63.158 23.98 0.00 40.52 4.17
4127 6200 1.694048 GGAGGGATCTCTCACCACCAT 60.694 57.143 23.98 0.00 39.86 3.55
4128 6201 2.122768 GAGGGATCTCTCACCACCATT 58.877 52.381 18.16 0.00 37.07 3.16
4227 6300 0.742505 CATTTCGCCTCCATGCACAT 59.257 50.000 0.00 0.00 0.00 3.21
4262 6335 1.301954 GGTGCCGTTAGGTTGGGAT 59.698 57.895 0.00 0.00 40.50 3.85
4264 6337 1.377987 TGCCGTTAGGTTGGGATGC 60.378 57.895 0.00 0.00 40.50 3.91
4266 6339 0.179468 GCCGTTAGGTTGGGATGCTA 59.821 55.000 0.00 0.00 40.50 3.49
4276 6349 0.471191 TGGGATGCTATGCTGGTGAG 59.529 55.000 0.00 0.00 0.00 3.51
4349 6423 9.793259 TTCCAGAACATGTTTCTAGATTAGTTT 57.207 29.630 13.36 0.00 0.00 2.66
4394 6468 1.804748 GAAACCTGCGTTCGGAATTCT 59.195 47.619 5.23 0.00 0.00 2.40
4406 6480 1.432270 GGAATTCTCAAGCGGCCTCG 61.432 60.000 5.23 0.00 39.81 4.63
4424 6498 4.499019 GCCTCGTTTGGAATTTGAGAAACA 60.499 41.667 0.00 0.00 0.00 2.83
4462 6536 1.719780 CTGTAGCGACACCGTTTTCTC 59.280 52.381 0.00 0.00 38.24 2.87
4468 6542 1.719780 CGACACCGTTTTCTCTGTAGC 59.280 52.381 0.00 0.00 0.00 3.58
4478 6552 0.246635 TCTCTGTAGCGCCCTGTTTC 59.753 55.000 2.29 0.00 0.00 2.78
4505 6581 6.559429 ACTATAGTGACCCGGTTTCCTATAT 58.441 40.000 4.10 0.00 0.00 0.86
4506 6582 7.702785 ACTATAGTGACCCGGTTTCCTATATA 58.297 38.462 4.10 0.00 0.00 0.86
4515 6591 6.041296 ACCCGGTTTCCTATATAAGTACTGTG 59.959 42.308 0.00 0.00 0.00 3.66
4518 6594 5.924825 GGTTTCCTATATAAGTACTGTGGCG 59.075 44.000 0.00 0.00 0.00 5.69
4519 6595 6.239120 GGTTTCCTATATAAGTACTGTGGCGA 60.239 42.308 0.00 0.00 0.00 5.54
4520 6596 6.964807 TTCCTATATAAGTACTGTGGCGAA 57.035 37.500 0.00 0.00 0.00 4.70
4522 6598 8.640063 TTCCTATATAAGTACTGTGGCGAATA 57.360 34.615 0.00 0.00 0.00 1.75
4614 6690 9.800433 AAAATTCATGAACCATTTTTGGAAAAC 57.200 25.926 11.07 0.00 27.77 2.43
4619 6695 5.967088 TGAACCATTTTTGGAAAACGAGAA 58.033 33.333 0.00 0.00 0.00 2.87
4623 6699 6.166982 ACCATTTTTGGAAAACGAGAACAAA 58.833 32.000 0.00 0.00 0.00 2.83
4624 6700 6.821160 ACCATTTTTGGAAAACGAGAACAAAT 59.179 30.769 0.00 0.00 31.92 2.32
4627 6703 9.553418 CATTTTTGGAAAACGAGAACAAATTTT 57.447 25.926 0.00 0.00 31.92 1.82
4691 6767 6.822073 AAATACGGAAGTTTTTGAAAGCAC 57.178 33.333 0.00 0.00 46.40 4.40
4692 6768 3.859411 ACGGAAGTTTTTGAAAGCACA 57.141 38.095 0.00 0.00 46.40 4.57
4699 6775 6.742264 GGAAGTTTTTGAAAGCACAAACATTG 59.258 34.615 9.45 0.00 43.63 2.82
4703 6779 8.134261 AGTTTTTGAAAGCACAAACATTGTTTT 58.866 25.926 12.02 2.25 43.63 2.43
4704 6780 7.848716 TTTTGAAAGCACAAACATTGTTTTG 57.151 28.000 12.02 13.67 43.23 2.44
4705 6781 6.791887 TTGAAAGCACAAACATTGTTTTGA 57.208 29.167 12.02 0.00 43.23 2.69
4706 6782 6.791887 TGAAAGCACAAACATTGTTTTGAA 57.208 29.167 12.02 0.00 43.23 2.69
4707 6783 6.829703 TGAAAGCACAAACATTGTTTTGAAG 58.170 32.000 12.02 4.20 43.23 3.02
4708 6784 4.863152 AGCACAAACATTGTTTTGAAGC 57.137 36.364 12.02 12.66 43.23 3.86
4709 6785 4.506758 AGCACAAACATTGTTTTGAAGCT 58.493 34.783 12.02 14.39 43.23 3.74
4710 6786 4.937015 AGCACAAACATTGTTTTGAAGCTT 59.063 33.333 12.02 0.00 42.78 3.74
4711 6787 5.412286 AGCACAAACATTGTTTTGAAGCTTT 59.588 32.000 12.02 0.00 42.78 3.51
4712 6788 6.072563 AGCACAAACATTGTTTTGAAGCTTTT 60.073 30.769 12.02 0.00 42.78 2.27
4713 6789 6.581919 GCACAAACATTGTTTTGAAGCTTTTT 59.418 30.769 12.02 0.00 43.23 1.94
4736 6812 7.606858 TTTTGAAAACATGAACATGCTTTGA 57.393 28.000 17.07 9.04 42.39 2.69
4737 6813 7.606858 TTTGAAAACATGAACATGCTTTGAA 57.393 28.000 17.07 13.38 42.39 2.69
4738 6814 7.606858 TTGAAAACATGAACATGCTTTGAAA 57.393 28.000 17.07 10.52 42.39 2.69
4739 6815 7.606858 TGAAAACATGAACATGCTTTGAAAA 57.393 28.000 17.07 2.65 42.39 2.29
4740 6816 8.211116 TGAAAACATGAACATGCTTTGAAAAT 57.789 26.923 17.07 3.72 42.39 1.82
4741 6817 8.123575 TGAAAACATGAACATGCTTTGAAAATG 58.876 29.630 17.07 0.00 42.39 2.32
4742 6818 7.556733 AAACATGAACATGCTTTGAAAATGT 57.443 28.000 13.71 0.00 42.39 2.71
4743 6819 6.533819 ACATGAACATGCTTTGAAAATGTG 57.466 33.333 13.71 0.00 42.39 3.21
4744 6820 6.282167 ACATGAACATGCTTTGAAAATGTGA 58.718 32.000 13.71 0.00 42.39 3.58
4745 6821 6.932400 ACATGAACATGCTTTGAAAATGTGAT 59.068 30.769 13.71 0.00 42.39 3.06
4746 6822 7.442969 ACATGAACATGCTTTGAAAATGTGATT 59.557 29.630 13.71 0.00 42.39 2.57
4747 6823 7.789273 TGAACATGCTTTGAAAATGTGATTT 57.211 28.000 0.00 0.00 34.82 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.656693 CCCCTCTATTTATATGTTGAGCCTTG 59.343 42.308 0.00 0.00 0.00 3.61
1 2 6.332901 ACCCCTCTATTTATATGTTGAGCCTT 59.667 38.462 0.00 0.00 0.00 4.35
2 3 5.852250 ACCCCTCTATTTATATGTTGAGCCT 59.148 40.000 0.00 0.00 0.00 4.58
3 4 6.128138 ACCCCTCTATTTATATGTTGAGCC 57.872 41.667 0.00 0.00 0.00 4.70
4 5 7.331791 CCTACCCCTCTATTTATATGTTGAGC 58.668 42.308 0.00 0.00 0.00 4.26
5 6 7.581658 GCCCTACCCCTCTATTTATATGTTGAG 60.582 44.444 0.00 0.00 0.00 3.02
6 7 6.214819 GCCCTACCCCTCTATTTATATGTTGA 59.785 42.308 0.00 0.00 0.00 3.18
7 8 6.215636 AGCCCTACCCCTCTATTTATATGTTG 59.784 42.308 0.00 0.00 0.00 3.33
8 9 6.340043 AGCCCTACCCCTCTATTTATATGTT 58.660 40.000 0.00 0.00 0.00 2.71
9 10 5.928656 AGCCCTACCCCTCTATTTATATGT 58.071 41.667 0.00 0.00 0.00 2.29
10 11 6.042208 GCTAGCCCTACCCCTCTATTTATATG 59.958 46.154 2.29 0.00 0.00 1.78
11 12 6.144625 GCTAGCCCTACCCCTCTATTTATAT 58.855 44.000 2.29 0.00 0.00 0.86
12 13 5.016998 TGCTAGCCCTACCCCTCTATTTATA 59.983 44.000 13.29 0.00 0.00 0.98
13 14 4.202901 TGCTAGCCCTACCCCTCTATTTAT 60.203 45.833 13.29 0.00 0.00 1.40
14 15 3.143359 TGCTAGCCCTACCCCTCTATTTA 59.857 47.826 13.29 0.00 0.00 1.40
15 16 2.090153 TGCTAGCCCTACCCCTCTATTT 60.090 50.000 13.29 0.00 0.00 1.40
16 17 1.508185 TGCTAGCCCTACCCCTCTATT 59.492 52.381 13.29 0.00 0.00 1.73
17 18 1.167943 TGCTAGCCCTACCCCTCTAT 58.832 55.000 13.29 0.00 0.00 1.98
18 19 0.187851 GTGCTAGCCCTACCCCTCTA 59.812 60.000 13.29 0.00 0.00 2.43
19 20 1.075151 GTGCTAGCCCTACCCCTCT 60.075 63.158 13.29 0.00 0.00 3.69
20 21 2.141448 GGTGCTAGCCCTACCCCTC 61.141 68.421 13.29 0.00 0.00 4.30
21 22 2.040779 GGTGCTAGCCCTACCCCT 60.041 66.667 13.29 0.00 0.00 4.79
22 23 3.169242 GGGTGCTAGCCCTACCCC 61.169 72.222 24.91 16.19 46.74 4.95
29 30 0.035056 ATGTGTCTTGGGTGCTAGCC 60.035 55.000 13.29 3.27 36.00 3.93
30 31 1.339055 TGATGTGTCTTGGGTGCTAGC 60.339 52.381 8.10 8.10 0.00 3.42
31 32 2.768253 TGATGTGTCTTGGGTGCTAG 57.232 50.000 0.00 0.00 0.00 3.42
32 33 2.637382 TCTTGATGTGTCTTGGGTGCTA 59.363 45.455 0.00 0.00 0.00 3.49
33 34 1.421268 TCTTGATGTGTCTTGGGTGCT 59.579 47.619 0.00 0.00 0.00 4.40
34 35 1.896220 TCTTGATGTGTCTTGGGTGC 58.104 50.000 0.00 0.00 0.00 5.01
35 36 3.631686 TGTTTCTTGATGTGTCTTGGGTG 59.368 43.478 0.00 0.00 0.00 4.61
36 37 3.632145 GTGTTTCTTGATGTGTCTTGGGT 59.368 43.478 0.00 0.00 0.00 4.51
37 38 3.004734 GGTGTTTCTTGATGTGTCTTGGG 59.995 47.826 0.00 0.00 0.00 4.12
38 39 3.631686 TGGTGTTTCTTGATGTGTCTTGG 59.368 43.478 0.00 0.00 0.00 3.61
39 40 4.898829 TGGTGTTTCTTGATGTGTCTTG 57.101 40.909 0.00 0.00 0.00 3.02
40 41 4.202050 GCTTGGTGTTTCTTGATGTGTCTT 60.202 41.667 0.00 0.00 0.00 3.01
41 42 3.316308 GCTTGGTGTTTCTTGATGTGTCT 59.684 43.478 0.00 0.00 0.00 3.41
42 43 3.550842 GGCTTGGTGTTTCTTGATGTGTC 60.551 47.826 0.00 0.00 0.00 3.67
43 44 2.362077 GGCTTGGTGTTTCTTGATGTGT 59.638 45.455 0.00 0.00 0.00 3.72
44 45 2.605338 CGGCTTGGTGTTTCTTGATGTG 60.605 50.000 0.00 0.00 0.00 3.21
45 46 1.608590 CGGCTTGGTGTTTCTTGATGT 59.391 47.619 0.00 0.00 0.00 3.06
46 47 1.608590 ACGGCTTGGTGTTTCTTGATG 59.391 47.619 0.00 0.00 0.00 3.07
47 48 1.608590 CACGGCTTGGTGTTTCTTGAT 59.391 47.619 0.00 0.00 33.24 2.57
48 49 1.021202 CACGGCTTGGTGTTTCTTGA 58.979 50.000 0.00 0.00 33.24 3.02
49 50 3.549997 CACGGCTTGGTGTTTCTTG 57.450 52.632 0.00 0.00 33.24 3.02
66 67 4.947147 GACAGGGTTGCCGGCACA 62.947 66.667 32.95 18.15 0.00 4.57
71 72 4.410400 GAGGGGACAGGGTTGCCG 62.410 72.222 0.00 0.00 0.00 5.69
72 73 2.771328 CTTGAGGGGACAGGGTTGCC 62.771 65.000 0.00 0.00 0.00 4.52
73 74 1.303643 CTTGAGGGGACAGGGTTGC 60.304 63.158 0.00 0.00 0.00 4.17
74 75 0.478507 AACTTGAGGGGACAGGGTTG 59.521 55.000 0.00 0.00 0.00 3.77
75 76 1.231963 AAACTTGAGGGGACAGGGTT 58.768 50.000 0.00 0.00 0.00 4.11
76 77 2.127651 TAAACTTGAGGGGACAGGGT 57.872 50.000 0.00 0.00 0.00 4.34
77 78 2.092375 GGATAAACTTGAGGGGACAGGG 60.092 54.545 0.00 0.00 0.00 4.45
78 79 2.846827 AGGATAAACTTGAGGGGACAGG 59.153 50.000 0.00 0.00 0.00 4.00
79 80 3.118223 GGAGGATAAACTTGAGGGGACAG 60.118 52.174 0.00 0.00 0.00 3.51
80 81 2.844348 GGAGGATAAACTTGAGGGGACA 59.156 50.000 0.00 0.00 0.00 4.02
81 82 2.158943 CGGAGGATAAACTTGAGGGGAC 60.159 54.545 0.00 0.00 0.00 4.46
82 83 2.116238 CGGAGGATAAACTTGAGGGGA 58.884 52.381 0.00 0.00 0.00 4.81
83 84 1.838077 ACGGAGGATAAACTTGAGGGG 59.162 52.381 0.00 0.00 0.00 4.79
84 85 2.500098 TGACGGAGGATAAACTTGAGGG 59.500 50.000 0.00 0.00 0.00 4.30
85 86 3.887621 TGACGGAGGATAAACTTGAGG 57.112 47.619 0.00 0.00 0.00 3.86
86 87 6.150396 ACTATGACGGAGGATAAACTTGAG 57.850 41.667 0.00 0.00 0.00 3.02
87 88 6.540438 AACTATGACGGAGGATAAACTTGA 57.460 37.500 0.00 0.00 0.00 3.02
88 89 7.010552 CAGAAACTATGACGGAGGATAAACTTG 59.989 40.741 0.00 0.00 0.00 3.16
89 90 7.042335 CAGAAACTATGACGGAGGATAAACTT 58.958 38.462 0.00 0.00 0.00 2.66
90 91 6.154706 ACAGAAACTATGACGGAGGATAAACT 59.845 38.462 0.00 0.00 0.00 2.66
91 92 6.338937 ACAGAAACTATGACGGAGGATAAAC 58.661 40.000 0.00 0.00 0.00 2.01
92 93 6.540438 ACAGAAACTATGACGGAGGATAAA 57.460 37.500 0.00 0.00 0.00 1.40
93 94 6.832384 ACTACAGAAACTATGACGGAGGATAA 59.168 38.462 0.00 0.00 0.00 1.75
94 95 6.262496 CACTACAGAAACTATGACGGAGGATA 59.738 42.308 0.00 0.00 0.00 2.59
95 96 5.067936 CACTACAGAAACTATGACGGAGGAT 59.932 44.000 0.00 0.00 0.00 3.24
96 97 4.398358 CACTACAGAAACTATGACGGAGGA 59.602 45.833 0.00 0.00 0.00 3.71
97 98 4.673441 CACTACAGAAACTATGACGGAGG 58.327 47.826 0.00 0.00 0.00 4.30
98 99 4.106197 GCACTACAGAAACTATGACGGAG 58.894 47.826 0.00 0.00 0.00 4.63
99 100 3.762288 AGCACTACAGAAACTATGACGGA 59.238 43.478 0.00 0.00 0.00 4.69
100 101 4.111375 AGCACTACAGAAACTATGACGG 57.889 45.455 0.00 0.00 0.00 4.79
101 102 4.327357 CCAAGCACTACAGAAACTATGACG 59.673 45.833 0.00 0.00 0.00 4.35
102 103 5.120830 CACCAAGCACTACAGAAACTATGAC 59.879 44.000 0.00 0.00 0.00 3.06
103 104 5.011635 TCACCAAGCACTACAGAAACTATGA 59.988 40.000 0.00 0.00 0.00 2.15
104 105 5.237815 TCACCAAGCACTACAGAAACTATG 58.762 41.667 0.00 0.00 0.00 2.23
105 106 5.483685 TCACCAAGCACTACAGAAACTAT 57.516 39.130 0.00 0.00 0.00 2.12
106 107 4.948341 TCACCAAGCACTACAGAAACTA 57.052 40.909 0.00 0.00 0.00 2.24
107 108 3.838244 TCACCAAGCACTACAGAAACT 57.162 42.857 0.00 0.00 0.00 2.66
108 109 4.474226 CTTCACCAAGCACTACAGAAAC 57.526 45.455 0.00 0.00 0.00 2.78
132 133 2.293122 TGGTGAAGAACAATTTCCGCAG 59.707 45.455 0.00 0.00 31.28 5.18
133 134 2.302260 TGGTGAAGAACAATTTCCGCA 58.698 42.857 0.00 0.00 31.28 5.69
134 135 3.049912 GTTGGTGAAGAACAATTTCCGC 58.950 45.455 0.00 0.00 31.28 5.54
135 136 4.041723 GTGTTGGTGAAGAACAATTTCCG 58.958 43.478 0.00 0.00 35.15 4.30
136 137 4.368315 GGTGTTGGTGAAGAACAATTTCC 58.632 43.478 0.00 0.00 35.15 3.13
137 138 4.041723 CGGTGTTGGTGAAGAACAATTTC 58.958 43.478 0.00 0.00 35.15 2.17
138 139 3.445805 ACGGTGTTGGTGAAGAACAATTT 59.554 39.130 0.00 0.00 35.15 1.82
139 140 3.020984 ACGGTGTTGGTGAAGAACAATT 58.979 40.909 0.00 0.00 35.15 2.32
140 141 2.616842 GACGGTGTTGGTGAAGAACAAT 59.383 45.455 0.00 0.00 35.15 2.71
141 142 2.011222 GACGGTGTTGGTGAAGAACAA 58.989 47.619 0.00 0.00 35.15 2.83
142 143 1.066071 TGACGGTGTTGGTGAAGAACA 60.066 47.619 0.00 0.00 0.00 3.18
143 144 1.329599 GTGACGGTGTTGGTGAAGAAC 59.670 52.381 0.00 0.00 0.00 3.01
144 145 1.658994 GTGACGGTGTTGGTGAAGAA 58.341 50.000 0.00 0.00 0.00 2.52
145 146 0.179067 GGTGACGGTGTTGGTGAAGA 60.179 55.000 0.00 0.00 0.00 2.87
146 147 0.462937 TGGTGACGGTGTTGGTGAAG 60.463 55.000 0.00 0.00 0.00 3.02
147 148 0.745128 GTGGTGACGGTGTTGGTGAA 60.745 55.000 0.00 0.00 0.00 3.18
148 149 1.153329 GTGGTGACGGTGTTGGTGA 60.153 57.895 0.00 0.00 0.00 4.02
149 150 2.530497 CGTGGTGACGGTGTTGGTG 61.530 63.158 0.00 0.00 42.18 4.17
150 151 2.202960 CGTGGTGACGGTGTTGGT 60.203 61.111 0.00 0.00 42.18 3.67
151 152 3.645975 GCGTGGTGACGGTGTTGG 61.646 66.667 0.00 0.00 46.20 3.77
152 153 3.645975 GGCGTGGTGACGGTGTTG 61.646 66.667 0.00 0.00 46.20 3.33
170 171 3.112709 GAGTTCCGGCAGCACGAC 61.113 66.667 0.00 0.00 35.47 4.34
171 172 2.835701 GATGAGTTCCGGCAGCACGA 62.836 60.000 0.00 0.00 35.47 4.35
172 173 2.434884 ATGAGTTCCGGCAGCACG 60.435 61.111 0.00 0.00 0.00 5.34
173 174 0.175760 TAGATGAGTTCCGGCAGCAC 59.824 55.000 0.00 0.00 0.00 4.40
174 175 0.175760 GTAGATGAGTTCCGGCAGCA 59.824 55.000 0.00 0.00 0.00 4.41
175 176 0.461961 AGTAGATGAGTTCCGGCAGC 59.538 55.000 0.00 0.00 0.00 5.25
176 177 2.952978 AGTAGTAGATGAGTTCCGGCAG 59.047 50.000 0.00 0.00 0.00 4.85
177 178 3.014304 AGTAGTAGATGAGTTCCGGCA 57.986 47.619 0.00 0.00 0.00 5.69
178 179 3.548415 CGAAGTAGTAGATGAGTTCCGGC 60.548 52.174 0.00 0.00 0.00 6.13
179 180 3.548415 GCGAAGTAGTAGATGAGTTCCGG 60.548 52.174 0.00 0.00 0.00 5.14
180 181 3.548415 GGCGAAGTAGTAGATGAGTTCCG 60.548 52.174 0.00 0.00 0.00 4.30
181 182 3.243468 GGGCGAAGTAGTAGATGAGTTCC 60.243 52.174 0.00 0.00 0.00 3.62
182 183 3.548415 CGGGCGAAGTAGTAGATGAGTTC 60.548 52.174 0.00 0.00 0.00 3.01
183 184 2.358267 CGGGCGAAGTAGTAGATGAGTT 59.642 50.000 0.00 0.00 0.00 3.01
184 185 1.948145 CGGGCGAAGTAGTAGATGAGT 59.052 52.381 0.00 0.00 0.00 3.41
185 186 1.948145 ACGGGCGAAGTAGTAGATGAG 59.052 52.381 0.00 0.00 0.00 2.90
186 187 1.945394 GACGGGCGAAGTAGTAGATGA 59.055 52.381 0.00 0.00 0.00 2.92
187 188 1.948145 AGACGGGCGAAGTAGTAGATG 59.052 52.381 0.00 0.00 0.00 2.90
188 189 2.345124 AGACGGGCGAAGTAGTAGAT 57.655 50.000 0.00 0.00 0.00 1.98
189 190 1.741706 CAAGACGGGCGAAGTAGTAGA 59.258 52.381 0.00 0.00 0.00 2.59
190 191 1.798079 GCAAGACGGGCGAAGTAGTAG 60.798 57.143 0.00 0.00 0.00 2.57
191 192 0.171903 GCAAGACGGGCGAAGTAGTA 59.828 55.000 0.00 0.00 0.00 1.82
192 193 1.080025 GCAAGACGGGCGAAGTAGT 60.080 57.895 0.00 0.00 0.00 2.73
193 194 1.078759 CAGCAAGACGGGCGAAGTAG 61.079 60.000 0.00 0.00 36.08 2.57
194 195 1.080093 CAGCAAGACGGGCGAAGTA 60.080 57.895 0.00 0.00 36.08 2.24
195 196 2.357517 CAGCAAGACGGGCGAAGT 60.358 61.111 0.00 0.00 36.08 3.01
196 197 2.859273 ATCCAGCAAGACGGGCGAAG 62.859 60.000 0.00 0.00 36.08 3.79
197 198 2.852495 GATCCAGCAAGACGGGCGAA 62.852 60.000 0.00 0.00 36.08 4.70
198 199 3.371097 GATCCAGCAAGACGGGCGA 62.371 63.158 0.00 0.00 36.08 5.54
199 200 2.892425 GATCCAGCAAGACGGGCG 60.892 66.667 0.00 0.00 36.08 6.13
200 201 1.372087 CTTGATCCAGCAAGACGGGC 61.372 60.000 0.00 0.00 46.31 6.13
201 202 0.250234 TCTTGATCCAGCAAGACGGG 59.750 55.000 3.12 0.00 46.73 5.28
202 203 3.840831 TCTTGATCCAGCAAGACGG 57.159 52.632 3.12 0.00 46.73 4.79
206 207 0.731417 CGCCTTCTTGATCCAGCAAG 59.269 55.000 0.00 0.00 45.10 4.01
207 208 0.324614 TCGCCTTCTTGATCCAGCAA 59.675 50.000 0.00 0.00 0.00 3.91
208 209 0.107993 CTCGCCTTCTTGATCCAGCA 60.108 55.000 0.00 0.00 0.00 4.41
209 210 0.813210 CCTCGCCTTCTTGATCCAGC 60.813 60.000 0.00 0.00 0.00 4.85
210 211 0.826715 TCCTCGCCTTCTTGATCCAG 59.173 55.000 0.00 0.00 0.00 3.86
211 212 0.537188 GTCCTCGCCTTCTTGATCCA 59.463 55.000 0.00 0.00 0.00 3.41
212 213 0.528684 CGTCCTCGCCTTCTTGATCC 60.529 60.000 0.00 0.00 0.00 3.36
213 214 0.173708 ACGTCCTCGCCTTCTTGATC 59.826 55.000 0.00 0.00 41.18 2.92
214 215 0.173708 GACGTCCTCGCCTTCTTGAT 59.826 55.000 3.51 0.00 41.18 2.57
215 216 1.176619 TGACGTCCTCGCCTTCTTGA 61.177 55.000 14.12 0.00 41.18 3.02
216 217 1.009389 GTGACGTCCTCGCCTTCTTG 61.009 60.000 14.12 0.00 41.18 3.02
217 218 1.289380 GTGACGTCCTCGCCTTCTT 59.711 57.895 14.12 0.00 41.18 2.52
218 219 2.637383 GGTGACGTCCTCGCCTTCT 61.637 63.158 14.12 0.00 45.20 2.85
219 220 2.126031 GGTGACGTCCTCGCCTTC 60.126 66.667 14.12 0.00 45.20 3.46
231 232 3.103911 CACGTTCGGCTCGGTGAC 61.104 66.667 0.00 0.00 0.00 3.67
232 233 3.598715 ACACGTTCGGCTCGGTGA 61.599 61.111 8.56 0.00 0.00 4.02
233 234 3.403057 CACACGTTCGGCTCGGTG 61.403 66.667 0.00 0.00 0.00 4.94
236 237 3.767230 CTGCACACGTTCGGCTCG 61.767 66.667 4.71 0.00 0.00 5.03
237 238 1.954146 TTCTGCACACGTTCGGCTC 60.954 57.895 4.71 0.00 0.00 4.70
238 239 2.108157 TTCTGCACACGTTCGGCT 59.892 55.556 4.71 0.00 0.00 5.52
239 240 2.159272 GAGTTCTGCACACGTTCGGC 62.159 60.000 0.00 0.00 0.00 5.54
240 241 1.853319 GAGTTCTGCACACGTTCGG 59.147 57.895 0.00 0.00 0.00 4.30
241 242 1.482955 CGAGTTCTGCACACGTTCG 59.517 57.895 0.00 0.00 35.01 3.95
242 243 0.596600 TCCGAGTTCTGCACACGTTC 60.597 55.000 0.00 0.00 37.75 3.95
243 244 0.597637 CTCCGAGTTCTGCACACGTT 60.598 55.000 0.00 0.00 37.75 3.99
244 245 1.007271 CTCCGAGTTCTGCACACGT 60.007 57.895 0.00 0.00 37.75 4.49
245 246 1.734477 CCTCCGAGTTCTGCACACG 60.734 63.158 0.00 0.00 39.03 4.49
246 247 0.946221 CACCTCCGAGTTCTGCACAC 60.946 60.000 0.00 0.00 0.00 3.82
247 248 1.367471 CACCTCCGAGTTCTGCACA 59.633 57.895 0.00 0.00 0.00 4.57
248 249 0.667792 GACACCTCCGAGTTCTGCAC 60.668 60.000 0.00 0.00 0.00 4.57
249 250 1.666011 GACACCTCCGAGTTCTGCA 59.334 57.895 0.00 0.00 0.00 4.41
250 251 1.444553 CGACACCTCCGAGTTCTGC 60.445 63.158 0.00 0.00 0.00 4.26
251 252 0.387367 CACGACACCTCCGAGTTCTG 60.387 60.000 0.00 0.00 0.00 3.02
252 253 1.957562 CACGACACCTCCGAGTTCT 59.042 57.895 0.00 0.00 0.00 3.01
253 254 1.733399 GCACGACACCTCCGAGTTC 60.733 63.158 0.00 0.00 0.00 3.01
254 255 1.745320 AAGCACGACACCTCCGAGTT 61.745 55.000 0.00 0.00 0.00 3.01
255 256 1.745320 AAAGCACGACACCTCCGAGT 61.745 55.000 0.00 0.00 0.00 4.18
256 257 1.006102 AAAGCACGACACCTCCGAG 60.006 57.895 0.00 0.00 0.00 4.63
257 258 1.006571 GAAAGCACGACACCTCCGA 60.007 57.895 0.00 0.00 0.00 4.55
258 259 2.372690 CGAAAGCACGACACCTCCG 61.373 63.158 0.00 0.00 35.09 4.63
259 260 2.027625 CCGAAAGCACGACACCTCC 61.028 63.158 0.00 0.00 35.09 4.30
260 261 0.038892 TACCGAAAGCACGACACCTC 60.039 55.000 0.00 0.00 35.09 3.85
261 262 0.319297 GTACCGAAAGCACGACACCT 60.319 55.000 0.00 0.00 35.09 4.00
262 263 0.319297 AGTACCGAAAGCACGACACC 60.319 55.000 0.00 0.00 35.09 4.16
263 264 1.191647 CAAGTACCGAAAGCACGACAC 59.808 52.381 0.00 0.00 35.09 3.67
264 265 1.493772 CAAGTACCGAAAGCACGACA 58.506 50.000 0.00 0.00 35.09 4.35
265 266 0.788391 CCAAGTACCGAAAGCACGAC 59.212 55.000 0.00 0.00 35.09 4.34
266 267 0.675083 TCCAAGTACCGAAAGCACGA 59.325 50.000 0.00 0.00 35.09 4.35
267 268 1.659098 GATCCAAGTACCGAAAGCACG 59.341 52.381 0.00 0.00 0.00 5.34
268 269 1.659098 CGATCCAAGTACCGAAAGCAC 59.341 52.381 0.00 0.00 0.00 4.40
269 270 1.404986 CCGATCCAAGTACCGAAAGCA 60.405 52.381 0.00 0.00 0.00 3.91
270 271 1.287425 CCGATCCAAGTACCGAAAGC 58.713 55.000 0.00 0.00 0.00 3.51
271 272 2.537401 GACCGATCCAAGTACCGAAAG 58.463 52.381 0.00 0.00 0.00 2.62
272 273 1.135315 CGACCGATCCAAGTACCGAAA 60.135 52.381 0.00 0.00 0.00 3.46
273 274 0.452987 CGACCGATCCAAGTACCGAA 59.547 55.000 0.00 0.00 0.00 4.30
274 275 1.378882 CCGACCGATCCAAGTACCGA 61.379 60.000 0.00 0.00 0.00 4.69
275 276 1.065273 CCGACCGATCCAAGTACCG 59.935 63.158 0.00 0.00 0.00 4.02
276 277 1.227176 GCCGACCGATCCAAGTACC 60.227 63.158 0.00 0.00 0.00 3.34
277 278 1.588139 CGCCGACCGATCCAAGTAC 60.588 63.158 0.00 0.00 40.02 2.73
278 279 2.048023 ACGCCGACCGATCCAAGTA 61.048 57.895 0.00 0.00 41.02 2.24
279 280 3.379445 ACGCCGACCGATCCAAGT 61.379 61.111 0.00 0.00 41.02 3.16
280 281 2.829043 TTCACGCCGACCGATCCAAG 62.829 60.000 0.00 0.00 41.02 3.61
281 282 2.829043 CTTCACGCCGACCGATCCAA 62.829 60.000 0.00 0.00 41.02 3.53
282 283 3.350909 CTTCACGCCGACCGATCCA 62.351 63.158 0.00 0.00 41.02 3.41
283 284 2.582498 CTTCACGCCGACCGATCC 60.582 66.667 0.00 0.00 41.02 3.36
284 285 1.872679 GTCTTCACGCCGACCGATC 60.873 63.158 0.00 0.00 41.02 3.69
285 286 2.181021 GTCTTCACGCCGACCGAT 59.819 61.111 0.00 0.00 41.02 4.18
286 287 4.394078 CGTCTTCACGCCGACCGA 62.394 66.667 0.00 0.00 39.69 4.69
295 296 4.332186 TGATGTAGTCGTACGTCTTCAC 57.668 45.455 19.61 13.19 43.23 3.18
296 297 4.378770 GGTTGATGTAGTCGTACGTCTTCA 60.379 45.833 19.61 19.79 43.23 3.02
297 298 4.094212 GGTTGATGTAGTCGTACGTCTTC 58.906 47.826 19.61 15.02 43.23 2.87
298 299 3.425359 CGGTTGATGTAGTCGTACGTCTT 60.425 47.826 19.61 2.66 43.23 3.01
299 300 2.094894 CGGTTGATGTAGTCGTACGTCT 59.905 50.000 18.54 18.54 43.23 4.18
300 301 2.434761 CGGTTGATGTAGTCGTACGTC 58.565 52.381 16.05 10.06 43.16 4.34
301 302 1.466360 GCGGTTGATGTAGTCGTACGT 60.466 52.381 16.05 0.00 30.95 3.57
302 303 1.186030 GCGGTTGATGTAGTCGTACG 58.814 55.000 9.53 9.53 30.95 3.67
303 304 1.186030 CGCGGTTGATGTAGTCGTAC 58.814 55.000 0.00 0.00 0.00 3.67
304 305 0.804364 ACGCGGTTGATGTAGTCGTA 59.196 50.000 12.47 0.00 0.00 3.43
305 306 0.038892 AACGCGGTTGATGTAGTCGT 60.039 50.000 12.47 0.00 0.00 4.34
306 307 0.365523 CAACGCGGTTGATGTAGTCG 59.634 55.000 12.47 0.00 45.28 4.18
307 308 1.705256 TCAACGCGGTTGATGTAGTC 58.295 50.000 12.47 0.00 45.88 2.59
308 309 3.898380 TCAACGCGGTTGATGTAGT 57.102 47.368 12.47 0.00 45.88 2.73
338 339 3.362791 CGTACTCTCATAGACCGTAAGCG 60.363 52.174 0.00 0.00 37.95 4.68
339 340 3.559242 ACGTACTCTCATAGACCGTAAGC 59.441 47.826 0.00 0.00 34.78 3.09
340 341 6.143758 GTCTACGTACTCTCATAGACCGTAAG 59.856 46.154 0.00 0.00 38.29 2.34
341 342 5.980116 GTCTACGTACTCTCATAGACCGTAA 59.020 44.000 0.00 0.00 38.29 3.18
342 343 5.067805 TGTCTACGTACTCTCATAGACCGTA 59.932 44.000 8.04 0.00 41.84 4.02
343 344 4.142071 TGTCTACGTACTCTCATAGACCGT 60.142 45.833 8.04 0.00 41.84 4.83
344 345 4.366586 TGTCTACGTACTCTCATAGACCG 58.633 47.826 8.04 0.00 41.84 4.79
345 346 5.816777 AGTTGTCTACGTACTCTCATAGACC 59.183 44.000 8.04 0.00 41.84 3.85
346 347 6.757947 AGAGTTGTCTACGTACTCTCATAGAC 59.242 42.308 11.32 7.80 43.81 2.59
347 348 6.876155 AGAGTTGTCTACGTACTCTCATAGA 58.124 40.000 11.32 0.00 43.81 1.98
354 355 3.622612 GGGAGAGAGTTGTCTACGTACTC 59.377 52.174 7.23 7.23 38.82 2.59
355 356 3.608796 GGGAGAGAGTTGTCTACGTACT 58.391 50.000 0.00 0.00 30.97 2.73
356 357 2.682352 GGGGAGAGAGTTGTCTACGTAC 59.318 54.545 0.00 0.00 30.97 3.67
357 358 2.575279 AGGGGAGAGAGTTGTCTACGTA 59.425 50.000 0.00 0.00 30.97 3.57
358 359 1.355043 AGGGGAGAGAGTTGTCTACGT 59.645 52.381 0.00 0.00 30.97 3.57
359 360 2.018515 GAGGGGAGAGAGTTGTCTACG 58.981 57.143 0.00 0.00 30.97 3.51
360 361 3.284617 GAGAGGGGAGAGAGTTGTCTAC 58.715 54.545 0.00 0.00 30.97 2.59
361 362 2.092861 CGAGAGGGGAGAGAGTTGTCTA 60.093 54.545 0.00 0.00 30.97 2.59
362 363 1.340600 CGAGAGGGGAGAGAGTTGTCT 60.341 57.143 0.00 0.00 34.86 3.41
363 364 1.099689 CGAGAGGGGAGAGAGTTGTC 58.900 60.000 0.00 0.00 0.00 3.18
364 365 0.406361 ACGAGAGGGGAGAGAGTTGT 59.594 55.000 0.00 0.00 0.00 3.32
365 366 1.551452 AACGAGAGGGGAGAGAGTTG 58.449 55.000 0.00 0.00 0.00 3.16
366 367 3.453059 TTAACGAGAGGGGAGAGAGTT 57.547 47.619 0.00 0.00 0.00 3.01
367 368 3.673543 ATTAACGAGAGGGGAGAGAGT 57.326 47.619 0.00 0.00 0.00 3.24
368 369 4.082463 GCATATTAACGAGAGGGGAGAGAG 60.082 50.000 0.00 0.00 0.00 3.20
369 370 3.827302 GCATATTAACGAGAGGGGAGAGA 59.173 47.826 0.00 0.00 0.00 3.10
370 371 3.574396 TGCATATTAACGAGAGGGGAGAG 59.426 47.826 0.00 0.00 0.00 3.20
371 372 3.572642 TGCATATTAACGAGAGGGGAGA 58.427 45.455 0.00 0.00 0.00 3.71
372 373 4.021104 TGATGCATATTAACGAGAGGGGAG 60.021 45.833 0.00 0.00 0.00 4.30
373 374 3.901222 TGATGCATATTAACGAGAGGGGA 59.099 43.478 0.00 0.00 0.00 4.81
374 375 3.997021 GTGATGCATATTAACGAGAGGGG 59.003 47.826 0.00 0.00 0.00 4.79
375 376 3.997021 GGTGATGCATATTAACGAGAGGG 59.003 47.826 0.00 0.00 0.00 4.30
376 377 4.631131 TGGTGATGCATATTAACGAGAGG 58.369 43.478 0.00 0.00 0.00 3.69
377 378 5.928264 TCATGGTGATGCATATTAACGAGAG 59.072 40.000 0.00 0.00 0.00 3.20
378 379 5.852827 TCATGGTGATGCATATTAACGAGA 58.147 37.500 0.00 0.00 0.00 4.04
379 380 6.183360 GGATCATGGTGATGCATATTAACGAG 60.183 42.308 0.00 0.00 43.55 4.18
380 381 5.643348 GGATCATGGTGATGCATATTAACGA 59.357 40.000 0.00 0.00 43.55 3.85
381 382 5.645067 AGGATCATGGTGATGCATATTAACG 59.355 40.000 12.83 0.00 46.03 3.18
382 383 6.624423 GCAGGATCATGGTGATGCATATTAAC 60.624 42.308 9.76 0.00 46.03 2.01
383 384 5.416639 GCAGGATCATGGTGATGCATATTAA 59.583 40.000 9.76 0.00 46.03 1.40
384 385 4.945543 GCAGGATCATGGTGATGCATATTA 59.054 41.667 9.76 0.00 46.03 0.98
385 386 3.762288 GCAGGATCATGGTGATGCATATT 59.238 43.478 9.76 0.00 46.03 1.28
386 387 3.245122 TGCAGGATCATGGTGATGCATAT 60.245 43.478 9.76 0.00 46.03 1.78
387 388 2.106857 TGCAGGATCATGGTGATGCATA 59.893 45.455 9.76 0.00 46.03 3.14
388 389 1.133606 TGCAGGATCATGGTGATGCAT 60.134 47.619 9.76 0.00 46.03 3.96
389 390 0.256464 TGCAGGATCATGGTGATGCA 59.744 50.000 9.76 9.98 46.03 3.96
390 391 1.269723 CATGCAGGATCATGGTGATGC 59.730 52.381 9.76 5.25 44.29 3.91
391 392 2.293399 CACATGCAGGATCATGGTGATG 59.707 50.000 4.84 0.00 46.02 3.07
392 393 2.583143 CACATGCAGGATCATGGTGAT 58.417 47.619 4.84 0.00 46.02 3.06
393 394 2.020181 GCACATGCAGGATCATGGTGA 61.020 52.381 16.19 0.00 46.02 4.02
394 395 0.384309 GCACATGCAGGATCATGGTG 59.616 55.000 4.84 9.83 46.02 4.17
395 396 1.099295 CGCACATGCAGGATCATGGT 61.099 55.000 4.84 0.00 46.02 3.55
396 397 1.099295 ACGCACATGCAGGATCATGG 61.099 55.000 4.84 0.00 46.02 3.66
397 398 1.529865 CTACGCACATGCAGGATCATG 59.470 52.381 4.84 2.22 46.86 3.07
398 399 1.541889 CCTACGCACATGCAGGATCAT 60.542 52.381 4.84 0.00 42.21 2.45
399 400 0.179076 CCTACGCACATGCAGGATCA 60.179 55.000 4.84 0.00 42.21 2.92
400 401 0.104855 TCCTACGCACATGCAGGATC 59.895 55.000 4.84 0.00 38.04 3.36
401 402 0.541392 TTCCTACGCACATGCAGGAT 59.459 50.000 4.84 0.00 41.17 3.24
402 403 0.541392 ATTCCTACGCACATGCAGGA 59.459 50.000 4.84 8.48 40.25 3.86
403 404 1.382522 AATTCCTACGCACATGCAGG 58.617 50.000 4.49 0.00 42.21 4.85
404 405 3.492421 AAAATTCCTACGCACATGCAG 57.508 42.857 4.49 0.00 42.21 4.41
405 406 3.932545 AAAAATTCCTACGCACATGCA 57.067 38.095 4.49 0.00 42.21 3.96
423 424 8.689972 TGTTGGGGAACGTAGTAATTTTAAAAA 58.310 29.630 4.44 0.00 45.00 1.94
424 425 8.230472 TGTTGGGGAACGTAGTAATTTTAAAA 57.770 30.769 2.51 2.51 45.00 1.52
425 426 7.814264 TGTTGGGGAACGTAGTAATTTTAAA 57.186 32.000 0.00 0.00 45.00 1.52
426 427 7.501892 ACTTGTTGGGGAACGTAGTAATTTTAA 59.498 33.333 0.00 0.00 45.00 1.52
427 428 6.997476 ACTTGTTGGGGAACGTAGTAATTTTA 59.003 34.615 0.00 0.00 45.00 1.52
428 429 5.829391 ACTTGTTGGGGAACGTAGTAATTTT 59.171 36.000 0.00 0.00 45.00 1.82
429 430 5.379187 ACTTGTTGGGGAACGTAGTAATTT 58.621 37.500 0.00 0.00 45.00 1.82
430 431 4.976864 ACTTGTTGGGGAACGTAGTAATT 58.023 39.130 0.00 0.00 45.00 1.40
431 432 4.628963 ACTTGTTGGGGAACGTAGTAAT 57.371 40.909 0.00 0.00 45.00 1.89
432 433 4.128643 CAACTTGTTGGGGAACGTAGTAA 58.871 43.478 5.65 0.00 45.00 2.24
433 434 3.134442 ACAACTTGTTGGGGAACGTAGTA 59.866 43.478 16.48 0.00 45.00 1.82
435 436 2.546789 GACAACTTGTTGGGGAACGTAG 59.453 50.000 16.48 0.00 0.00 3.51
436 437 2.093075 TGACAACTTGTTGGGGAACGTA 60.093 45.455 16.48 0.00 0.00 3.57
437 438 1.340211 TGACAACTTGTTGGGGAACGT 60.340 47.619 16.48 0.00 0.00 3.99
438 439 1.384525 TGACAACTTGTTGGGGAACG 58.615 50.000 16.48 0.00 0.00 3.95
439 440 5.722021 ATTATGACAACTTGTTGGGGAAC 57.278 39.130 16.48 4.84 0.00 3.62
440 441 6.739331 AAATTATGACAACTTGTTGGGGAA 57.261 33.333 16.48 6.64 0.00 3.97
441 442 6.520272 CAAAATTATGACAACTTGTTGGGGA 58.480 36.000 16.48 2.06 0.00 4.81
442 443 5.179182 GCAAAATTATGACAACTTGTTGGGG 59.821 40.000 16.48 0.00 0.00 4.96
443 444 5.990996 AGCAAAATTATGACAACTTGTTGGG 59.009 36.000 16.48 0.00 0.00 4.12
444 445 7.481275 AAGCAAAATTATGACAACTTGTTGG 57.519 32.000 16.48 1.07 0.00 3.77
499 500 4.213564 TCACAAATTTGGTTGGCTGTTT 57.786 36.364 21.74 0.00 32.50 2.83
504 505 3.924144 TGCTATCACAAATTTGGTTGGC 58.076 40.909 21.74 17.45 32.50 4.52
557 559 2.162809 CACATTGCAAGCTATGTCTGCA 59.837 45.455 16.99 5.92 39.58 4.41
558 560 2.479049 CCACATTGCAAGCTATGTCTGC 60.479 50.000 16.99 0.21 39.58 4.26
561 566 3.941483 ACTACCACATTGCAAGCTATGTC 59.059 43.478 16.99 0.00 39.58 3.06
572 577 9.109393 AGTATATAGCAAAACACTACCACATTG 57.891 33.333 0.00 0.00 0.00 2.82
577 582 7.426606 TCCAGTATATAGCAAAACACTACCA 57.573 36.000 0.00 0.00 0.00 3.25
584 589 3.746492 CCGGCTCCAGTATATAGCAAAAC 59.254 47.826 0.00 0.00 38.01 2.43
647 652 3.470709 TGGCTCACTCACTTCTTTTCTG 58.529 45.455 0.00 0.00 0.00 3.02
659 664 5.125100 TGAATTTGTGAATTGGCTCACTC 57.875 39.130 6.87 0.00 45.03 3.51
661 666 4.874970 ACTGAATTTGTGAATTGGCTCAC 58.125 39.130 0.00 0.00 45.01 3.51
662 667 4.320421 CGACTGAATTTGTGAATTGGCTCA 60.320 41.667 0.00 0.00 35.65 4.26
663 668 4.083324 TCGACTGAATTTGTGAATTGGCTC 60.083 41.667 0.00 0.00 35.65 4.70
670 675 2.548057 GCCAGTCGACTGAATTTGTGAA 59.452 45.455 40.21 0.00 46.59 3.18
717 723 1.977854 TCTTGGCTGCAGTTCCTCTAA 59.022 47.619 16.64 1.21 0.00 2.10
730 736 2.479566 TTCGAGCAATCTTCTTGGCT 57.520 45.000 0.00 0.00 39.75 4.75
788 795 2.554032 CACTCTTCAAGGCCAAAATCGT 59.446 45.455 5.01 0.00 0.00 3.73
892 912 2.983725 AATGGCGGCCTATTGCTCCC 62.984 60.000 21.46 0.00 40.92 4.30
1081 1106 4.012895 CGGCCAGCACACGTTGTC 62.013 66.667 2.24 0.00 0.00 3.18
1271 1296 2.601666 AGCAGGAGGACGCAGACA 60.602 61.111 0.00 0.00 0.00 3.41
1278 1303 3.462678 GGTCGGGAGCAGGAGGAC 61.463 72.222 0.00 0.00 0.00 3.85
1374 1399 1.518572 CGTCGTCCTTAATGCCGCT 60.519 57.895 0.00 0.00 0.00 5.52
1766 1791 1.997311 CAGGTCCATGAGCCTGGGA 60.997 63.158 20.88 0.00 46.27 4.37
1771 1796 2.827642 GCAGCAGGTCCATGAGCC 60.828 66.667 0.00 0.00 0.00 4.70
1790 1815 2.952310 GCCCTGGAACTTGTTATCATCC 59.048 50.000 0.00 0.00 0.00 3.51
1983 2009 2.171079 ATACATGCGCCGTCGTTGG 61.171 57.895 4.18 0.00 38.14 3.77
2049 2076 4.702131 GCATTTCTGGTCAAGTAATCCACT 59.298 41.667 0.00 0.00 40.05 4.00
2105 2132 0.167470 GAGGCGTTTCCGTTTTAGCC 59.833 55.000 0.00 0.00 44.45 3.93
2195 2222 3.771160 GGGACTGCCGGTGTCGAT 61.771 66.667 18.61 0.00 39.00 3.59
2253 2280 2.355513 CCTTAGGAGCAGCATCTTGTGT 60.356 50.000 0.00 0.00 0.00 3.72
2304 2331 1.299648 CGAGGATTGCCACCAGGAA 59.700 57.895 0.00 0.00 36.89 3.36
3364 3391 3.376935 ATCAGCTTCACCGCCTCCG 62.377 63.158 0.00 0.00 0.00 4.63
3621 3648 1.745489 CGGAGGTGCTTAGTTGGGC 60.745 63.158 0.00 0.00 0.00 5.36
3701 3742 6.753279 CCAAATTAATGCTACCACTGAACATG 59.247 38.462 0.00 0.00 0.00 3.21
3768 3838 5.725362 AGCTAAAGATGGAGAACTGTGTAC 58.275 41.667 0.00 0.00 0.00 2.90
3769 3839 7.476540 TTAGCTAAAGATGGAGAACTGTGTA 57.523 36.000 2.97 0.00 0.00 2.90
3800 3870 5.658634 AGATGAACACTGAGACCAGCTAATA 59.341 40.000 0.00 0.00 44.16 0.98
3805 3875 2.028658 TCAGATGAACACTGAGACCAGC 60.029 50.000 0.00 0.00 44.16 4.85
3833 3904 2.365617 TCTGAATCCCTAATCCGCTGAC 59.634 50.000 0.00 0.00 0.00 3.51
3835 3906 3.475566 TTCTGAATCCCTAATCCGCTG 57.524 47.619 0.00 0.00 0.00 5.18
3940 4011 2.897271 TTTCCTGCTGGCCATCTTTA 57.103 45.000 5.51 0.00 0.00 1.85
3944 4015 0.968405 TGTTTTTCCTGCTGGCCATC 59.032 50.000 5.51 1.26 0.00 3.51
3963 4034 5.984926 ACGAGCATGACATTTCAATTTTTGT 59.015 32.000 0.00 0.00 34.61 2.83
3968 4039 6.682423 TGATACGAGCATGACATTTCAATT 57.318 33.333 0.00 0.00 34.61 2.32
4098 6171 3.225061 GATCCCTCCCGGTCGACC 61.225 72.222 25.28 25.28 0.00 4.79
4100 6173 2.195139 GAGATCCCTCCCGGTCGA 59.805 66.667 0.00 0.00 33.30 4.20
4101 6174 1.899534 GAGAGATCCCTCCCGGTCG 60.900 68.421 0.00 0.00 40.30 4.79
4105 6178 1.075970 TGGTGAGAGATCCCTCCCG 60.076 63.158 1.29 0.00 40.30 5.14
4123 6196 1.571955 GAGGGGAAATTGGCAATGGT 58.428 50.000 14.47 4.84 0.00 3.55
4127 6200 1.080170 GGGGAGGGGAAATTGGCAA 59.920 57.895 0.68 0.68 0.00 4.52
4128 6201 1.451372 AAGGGGAGGGGAAATTGGCA 61.451 55.000 0.00 0.00 0.00 4.92
4209 6282 0.742505 CATGTGCATGGAGGCGAAAT 59.257 50.000 4.35 0.00 35.24 2.17
4227 6300 4.063967 CGCCTCGTACCAGCACCA 62.064 66.667 0.00 0.00 0.00 4.17
4230 6303 4.063967 CACCGCCTCGTACCAGCA 62.064 66.667 0.00 0.00 0.00 4.41
4262 6335 0.543277 CTTCCCTCACCAGCATAGCA 59.457 55.000 0.00 0.00 0.00 3.49
4264 6337 0.531532 CGCTTCCCTCACCAGCATAG 60.532 60.000 0.00 0.00 32.71 2.23
4266 6339 2.270205 CGCTTCCCTCACCAGCAT 59.730 61.111 0.00 0.00 32.71 3.79
4298 6371 1.198759 ACATAGACCCACCAAGCCGT 61.199 55.000 0.00 0.00 0.00 5.68
4349 6423 2.907696 TGGGAGTGGTTCGGAAATTCTA 59.092 45.455 0.00 0.00 0.00 2.10
4351 6425 1.810755 GTGGGAGTGGTTCGGAAATTC 59.189 52.381 0.00 0.00 0.00 2.17
4394 6468 2.668185 TTCCAAACGAGGCCGCTTGA 62.668 55.000 9.61 0.00 42.56 3.02
4406 6480 7.382218 CCTATGTGTGTTTCTCAAATTCCAAAC 59.618 37.037 0.00 0.00 0.00 2.93
4444 6518 1.719780 CAGAGAAAACGGTGTCGCTAC 59.280 52.381 0.00 0.00 40.63 3.58
4454 6528 0.389948 AGGGCGCTACAGAGAAAACG 60.390 55.000 7.64 0.00 0.00 3.60
4462 6536 0.602638 TGTGAAACAGGGCGCTACAG 60.603 55.000 7.64 0.00 45.67 2.74
4478 6552 3.518590 GAAACCGGGTCACTATAGTGTG 58.481 50.000 27.83 17.37 45.76 3.82
4601 6677 9.553418 AAAATTTGTTCTCGTTTTCCAAAAATG 57.447 25.926 0.00 0.00 0.00 2.32
4653 6729 9.819267 ACTTCCGTATTTTAAAATTTTGTTCCA 57.181 25.926 18.14 0.00 0.00 3.53
4664 6740 9.367444 TGCTTTCAAAAACTTCCGTATTTTAAA 57.633 25.926 0.00 0.00 0.00 1.52
4665 6741 8.809478 GTGCTTTCAAAAACTTCCGTATTTTAA 58.191 29.630 0.00 0.00 0.00 1.52
4666 6742 7.974501 TGTGCTTTCAAAAACTTCCGTATTTTA 59.025 29.630 0.00 0.00 0.00 1.52
4688 6764 4.863152 AGCTTCAAAACAATGTTTGTGC 57.137 36.364 12.50 13.14 44.59 4.57
4711 6787 8.037382 TCAAAGCATGTTCATGTTTTCAAAAA 57.963 26.923 19.26 5.95 33.67 1.94
4712 6788 7.606858 TCAAAGCATGTTCATGTTTTCAAAA 57.393 28.000 19.26 7.70 33.67 2.44
4713 6789 7.606858 TTCAAAGCATGTTCATGTTTTCAAA 57.393 28.000 19.26 14.96 33.67 2.69
4714 6790 7.606858 TTTCAAAGCATGTTCATGTTTTCAA 57.393 28.000 19.26 13.40 33.67 2.69
4715 6791 7.606858 TTTTCAAAGCATGTTCATGTTTTCA 57.393 28.000 19.26 8.95 33.67 2.69
4716 6792 8.124199 ACATTTTCAAAGCATGTTCATGTTTTC 58.876 29.630 19.26 3.30 33.67 2.29
4717 6793 7.911205 CACATTTTCAAAGCATGTTCATGTTTT 59.089 29.630 17.34 17.34 35.78 2.43
4718 6794 7.280428 TCACATTTTCAAAGCATGTTCATGTTT 59.720 29.630 13.24 10.92 0.00 2.83
4719 6795 6.762187 TCACATTTTCAAAGCATGTTCATGTT 59.238 30.769 13.24 5.61 0.00 2.71
4720 6796 6.282167 TCACATTTTCAAAGCATGTTCATGT 58.718 32.000 13.24 0.00 0.00 3.21
4721 6797 6.772770 TCACATTTTCAAAGCATGTTCATG 57.227 33.333 8.26 8.26 0.00 3.07
4722 6798 7.972832 AATCACATTTTCAAAGCATGTTCAT 57.027 28.000 0.00 0.00 0.00 2.57
4723 6799 7.789273 AAATCACATTTTCAAAGCATGTTCA 57.211 28.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.