Multiple sequence alignment - TraesCS7D01G250600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G250600 chr7D 100.000 5308 0 0 1 5308 222523394 222528701 0.000000e+00 9803.0
1 TraesCS7D01G250600 chr7D 94.423 520 23 3 1 514 446248159 446248678 0.000000e+00 795.0
2 TraesCS7D01G250600 chr7D 80.399 602 101 12 1602 2197 529471107 529471697 4.880000e-120 442.0
3 TraesCS7D01G250600 chr7D 99.107 224 2 0 5084 5307 222535237 222535460 2.300000e-108 403.0
4 TraesCS7D01G250600 chr7D 97.778 225 5 0 5084 5308 94356774 94356998 6.450000e-104 388.0
5 TraesCS7D01G250600 chr7D 73.013 604 142 20 1606 2197 136113576 136114170 5.420000e-45 193.0
6 TraesCS7D01G250600 chr7B 93.030 1449 80 7 2984 4413 174046183 174044737 0.000000e+00 2097.0
7 TraesCS7D01G250600 chr7B 89.037 675 41 15 4422 5083 174043988 174043334 0.000000e+00 806.0
8 TraesCS7D01G250600 chr7B 88.757 676 39 15 958 1604 174047226 174046559 0.000000e+00 793.0
9 TraesCS7D01G250600 chr7B 89.367 442 23 11 541 960 174047706 174047267 7.820000e-148 534.0
10 TraesCS7D01G250600 chr7B 95.625 160 5 1 2759 2918 174046572 174046415 6.820000e-64 255.0
11 TraesCS7D01G250600 chr7B 72.627 727 177 20 1609 2324 127748821 127749536 2.490000e-53 220.0
12 TraesCS7D01G250600 chr7A 92.606 1109 58 10 512 1604 237509262 237510362 0.000000e+00 1572.0
13 TraesCS7D01G250600 chr7A 88.849 1121 88 19 2759 3856 237510349 237511455 0.000000e+00 1343.0
14 TraesCS7D01G250600 chr7A 96.078 561 17 4 3965 4524 237511516 237512072 0.000000e+00 909.0
15 TraesCS7D01G250600 chr7A 87.547 530 46 15 4561 5082 237512388 237512905 3.540000e-166 595.0
16 TraesCS7D01G250600 chr7A 100.000 33 0 0 3916 3948 237511483 237511515 1.600000e-05 62.1
17 TraesCS7D01G250600 chr1A 89.273 1156 115 9 1609 2758 380580476 380581628 0.000000e+00 1439.0
18 TraesCS7D01G250600 chr1A 97.768 224 5 0 5084 5307 459448996 459448773 2.320000e-103 387.0
19 TraesCS7D01G250600 chr1A 97.333 225 6 0 5083 5307 459477657 459477433 3.000000e-102 383.0
20 TraesCS7D01G250600 chr3A 91.902 815 65 1 1945 2758 238666106 238665292 0.000000e+00 1138.0
21 TraesCS7D01G250600 chr6D 83.621 1044 161 9 1712 2749 93626432 93625393 0.000000e+00 972.0
22 TraesCS7D01G250600 chr2B 80.796 1156 211 10 1609 2757 263914287 263913136 0.000000e+00 894.0
23 TraesCS7D01G250600 chr4A 79.708 1163 213 21 1609 2756 476496037 476497191 0.000000e+00 819.0
24 TraesCS7D01G250600 chr1B 77.022 1162 244 19 1609 2757 645720134 645718983 0.000000e+00 645.0
25 TraesCS7D01G250600 chr1B 83.887 391 54 8 1609 1993 608837945 608837558 1.090000e-96 364.0
26 TraesCS7D01G250600 chr5D 98.222 225 4 0 5084 5308 210048514 210048738 1.390000e-105 394.0
27 TraesCS7D01G250600 chr5D 77.712 507 96 15 1609 2107 292135858 292136355 1.450000e-75 294.0
28 TraesCS7D01G250600 chr3D 97.807 228 4 1 5080 5307 168826723 168826497 4.980000e-105 392.0
29 TraesCS7D01G250600 chr3D 88.406 69 4 1 449 513 396642450 396642382 4.410000e-11 80.5
30 TraesCS7D01G250600 chr2D 97.768 224 5 0 5084 5307 166689439 166689216 2.320000e-103 387.0
31 TraesCS7D01G250600 chr4D 97.345 226 6 0 5082 5307 26169791 26169566 8.340000e-103 385.0
32 TraesCS7D01G250600 chr5A 95.745 235 9 1 5074 5307 416104060 416103826 1.400000e-100 377.0
33 TraesCS7D01G250600 chr5A 84.615 234 36 0 4064 4297 484075369 484075602 3.200000e-57 233.0
34 TraesCS7D01G250600 chr5B 85.169 236 35 0 4064 4299 460262302 460262537 5.310000e-60 243.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G250600 chr7D 222523394 222528701 5307 False 9803.00 9803 100.0000 1 5308 1 chr7D.!!$F3 5307
1 TraesCS7D01G250600 chr7D 446248159 446248678 519 False 795.00 795 94.4230 1 514 1 chr7D.!!$F5 513
2 TraesCS7D01G250600 chr7D 529471107 529471697 590 False 442.00 442 80.3990 1602 2197 1 chr7D.!!$F6 595
3 TraesCS7D01G250600 chr7B 174043334 174047706 4372 True 897.00 2097 91.1632 541 5083 5 chr7B.!!$R1 4542
4 TraesCS7D01G250600 chr7B 127748821 127749536 715 False 220.00 220 72.6270 1609 2324 1 chr7B.!!$F1 715
5 TraesCS7D01G250600 chr7A 237509262 237512905 3643 False 896.22 1572 93.0160 512 5082 5 chr7A.!!$F1 4570
6 TraesCS7D01G250600 chr1A 380580476 380581628 1152 False 1439.00 1439 89.2730 1609 2758 1 chr1A.!!$F1 1149
7 TraesCS7D01G250600 chr3A 238665292 238666106 814 True 1138.00 1138 91.9020 1945 2758 1 chr3A.!!$R1 813
8 TraesCS7D01G250600 chr6D 93625393 93626432 1039 True 972.00 972 83.6210 1712 2749 1 chr6D.!!$R1 1037
9 TraesCS7D01G250600 chr2B 263913136 263914287 1151 True 894.00 894 80.7960 1609 2757 1 chr2B.!!$R1 1148
10 TraesCS7D01G250600 chr4A 476496037 476497191 1154 False 819.00 819 79.7080 1609 2756 1 chr4A.!!$F1 1147
11 TraesCS7D01G250600 chr1B 645718983 645720134 1151 True 645.00 645 77.0220 1609 2757 1 chr1B.!!$R2 1148

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
85 86 0.108615 AGAGATTGACGCGGGTGAAG 60.109 55.000 10.96 0.00 0.00 3.02 F
584 595 1.676006 GGTTTGCAGGATATGAACCCG 59.324 52.381 3.27 0.00 32.19 5.28 F
1733 1842 0.548989 ACCCACACCAGCTACAACAA 59.451 50.000 0.00 0.00 0.00 2.83 F
2766 2880 0.178068 GGTGGGCTATGTCGACATGT 59.822 55.000 35.46 18.15 37.15 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1076 1164 0.031585 CAGTCCGTCGTCCTTGAACA 59.968 55.0 0.00 0.0 0.00 3.18 R
1852 1964 0.033796 ATGCCAGGGTGTTCCATCAG 60.034 55.0 0.00 0.0 38.24 2.90 R
3686 3966 0.178932 ACAGGCCAGTGTAGAGACCA 60.179 55.0 5.01 0.0 0.00 4.02 R
4481 5523 0.030092 TCCTCCCCCTAGACCCAATG 60.030 60.0 0.00 0.0 0.00 2.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 1.051008 TCAGAGGCAGCTTTGAGACA 58.949 50.000 0.00 0.00 0.00 3.41
54 55 1.754201 GCTTTGAGACAAAGGGTGGGT 60.754 52.381 20.59 0.00 0.00 4.51
85 86 0.108615 AGAGATTGACGCGGGTGAAG 60.109 55.000 10.96 0.00 0.00 3.02
175 178 2.202837 CCGTAAGCCGCACCCTAC 60.203 66.667 0.00 0.00 34.38 3.18
178 181 1.814169 GTAAGCCGCACCCTACTGC 60.814 63.158 0.00 0.00 0.00 4.40
235 238 9.938280 TTGATTTTTCTATAACGAAGAAGAGGA 57.062 29.630 0.00 0.00 34.59 3.71
253 256 3.207778 AGGAGTCGATCGGTTTAGAGAG 58.792 50.000 16.41 0.00 0.00 3.20
271 274 3.816523 GAGAGGGGTAGTAGATCGTCTTG 59.183 52.174 0.00 0.00 0.00 3.02
421 424 6.089954 CACATGCATGACGTCATACTATTAGG 59.910 42.308 32.75 15.97 34.26 2.69
434 437 6.553476 TCATACTATTAGGGCTGAAAGTGCTA 59.447 38.462 0.00 0.00 35.30 3.49
462 465 3.866651 CAAGCTTGCTGAGGTGTATAGT 58.133 45.455 14.65 0.00 35.94 2.12
463 466 3.810310 AGCTTGCTGAGGTGTATAGTC 57.190 47.619 0.00 0.00 34.08 2.59
476 479 6.810911 AGGTGTATAGTCTGCATGTTAAGAG 58.189 40.000 0.00 0.00 0.00 2.85
487 490 9.331282 GTCTGCATGTTAAGAGAAATAGGTTAT 57.669 33.333 0.00 0.00 0.00 1.89
491 494 8.352942 GCATGTTAAGAGAAATAGGTTATTGGG 58.647 37.037 0.00 0.00 0.00 4.12
494 497 8.787818 TGTTAAGAGAAATAGGTTATTGGGGAT 58.212 33.333 0.00 0.00 0.00 3.85
502 509 8.956446 AAATAGGTTATTGGGGATGAATTAGG 57.044 34.615 0.00 0.00 0.00 2.69
532 539 1.919240 TTGTAGTTCTCCCGCTCTCA 58.081 50.000 0.00 0.00 0.00 3.27
584 595 1.676006 GGTTTGCAGGATATGAACCCG 59.324 52.381 3.27 0.00 32.19 5.28
843 875 3.061563 GCGTCGCACAACATGTAGAAATA 59.938 43.478 13.44 0.00 0.00 1.40
848 880 5.872070 TCGCACAACATGTAGAAATATGTCA 59.128 36.000 0.00 0.00 36.52 3.58
1092 1180 1.008194 CGTGTTCAAGGACGACGGA 60.008 57.895 0.00 0.00 37.81 4.69
1098 1186 1.444553 CAAGGACGACGGACTGCTC 60.445 63.158 0.00 0.00 0.00 4.26
1101 1189 4.477975 GACGACGGACTGCTCGGG 62.478 72.222 0.00 0.00 34.07 5.14
1132 1226 2.404995 AAGGACGGCTACCTCGACG 61.405 63.158 0.00 0.00 36.67 5.12
1190 1284 2.494918 CGCCGTCAGGGTAAGGAG 59.505 66.667 0.00 0.00 38.44 3.69
1275 1369 1.686355 TCGTTTGGAGGCATTGTTGT 58.314 45.000 0.00 0.00 0.00 3.32
1469 1563 8.094798 TGTTTCGCTCTCTTTTAATTGTATGT 57.905 30.769 0.00 0.00 0.00 2.29
1497 1591 8.648557 TGATAGTATAACAGTCACTGCAATTC 57.351 34.615 4.13 0.00 34.37 2.17
1498 1592 7.710907 TGATAGTATAACAGTCACTGCAATTCC 59.289 37.037 4.13 0.00 34.37 3.01
1520 1614 9.668497 ATTCCTTGTTTTTACTAGTATGACTCC 57.332 33.333 2.79 0.00 0.00 3.85
1530 1624 5.645201 ACTAGTATGACTCCATGGCTGATA 58.355 41.667 6.96 0.00 34.31 2.15
1591 1693 5.716228 TGTGTGCATCTTTCTATTTCCCATT 59.284 36.000 0.00 0.00 0.00 3.16
1604 1706 5.549742 ATTTCCCATTGACATGTGTTGTT 57.450 34.783 1.15 0.00 39.18 2.83
1605 1707 4.319139 TTCCCATTGACATGTGTTGTTG 57.681 40.909 1.15 0.00 39.18 3.33
1606 1708 3.295093 TCCCATTGACATGTGTTGTTGT 58.705 40.909 1.15 0.00 39.18 3.32
1607 1709 3.067883 TCCCATTGACATGTGTTGTTGTG 59.932 43.478 1.15 0.00 39.18 3.33
1683 1789 7.660208 AGTTATAATTACAAGATACCAAGCCGG 59.340 37.037 0.00 0.00 42.50 6.13
1724 1833 1.530655 GAAACCCCACCCACACCAG 60.531 63.158 0.00 0.00 0.00 4.00
1733 1842 0.548989 ACCCACACCAGCTACAACAA 59.451 50.000 0.00 0.00 0.00 2.83
1747 1857 5.070580 AGCTACAACAAACTAGGTCACTCTT 59.929 40.000 0.00 0.00 0.00 2.85
1752 1862 4.369182 ACAAACTAGGTCACTCTTTCACG 58.631 43.478 0.00 0.00 0.00 4.35
1778 1890 3.558033 GGTCTAACCTCCAACACCAAAA 58.442 45.455 0.00 0.00 34.73 2.44
1786 1898 2.554032 CTCCAACACCAAAACCAGCTAG 59.446 50.000 0.00 0.00 0.00 3.42
1793 1905 1.168714 CAAAACCAGCTAGCCTCCAC 58.831 55.000 12.13 0.00 0.00 4.02
1799 1911 1.689575 CCAGCTAGCCTCCACTCCTTA 60.690 57.143 12.13 0.00 0.00 2.69
1820 1932 4.899352 AACCTCTAGCAACACTTGATCT 57.101 40.909 0.00 0.00 29.47 2.75
1824 1936 4.355437 CTCTAGCAACACTTGATCTACCG 58.645 47.826 0.00 0.00 29.47 4.02
1828 1940 2.418197 GCAACACTTGATCTACCGGCTA 60.418 50.000 0.00 0.00 0.00 3.93
1930 2043 1.949465 AAGAGTCGAAACCACGCTTT 58.051 45.000 0.00 0.00 30.59 3.51
2017 2130 3.193267 GTGGCTGGATGTTAATCTGCAAA 59.807 43.478 0.00 0.00 35.47 3.68
2120 2233 0.804989 GGTGAAACAAGGCGATGGAG 59.195 55.000 0.00 0.00 39.98 3.86
2140 2253 3.023949 ATCCTGCAGCCCGTGTCTC 62.024 63.158 8.66 0.00 0.00 3.36
2161 2274 1.418334 CCCTCCGATCAGAAGTCCAT 58.582 55.000 0.00 0.00 0.00 3.41
2197 2310 3.057596 CGGTGAGCCAAGCAAAGATTTTA 60.058 43.478 0.00 0.00 34.09 1.52
2231 2344 1.318158 CCAGCTCCTCCAAATGCCAC 61.318 60.000 0.00 0.00 0.00 5.01
2239 2352 4.114997 CAAATGCCACCCGCCGTC 62.115 66.667 0.00 0.00 36.24 4.79
2303 2416 6.202188 CGATTTTGCCGTGTAGATACCTTTAT 59.798 38.462 0.00 0.00 0.00 1.40
2327 2440 1.709147 CGCAGGCCAGTAGAACATGC 61.709 60.000 5.01 0.79 0.00 4.06
2412 2525 3.266772 TGGGCCATAAAAGAGATGTCACT 59.733 43.478 0.00 0.00 0.00 3.41
2457 2571 0.689055 TGATGAGAGCCTGTTGCACT 59.311 50.000 0.00 0.00 44.11 4.40
2555 2669 8.601047 TGTATCCATCTATCCTTCCAGAATAG 57.399 38.462 0.00 0.00 0.00 1.73
2591 2705 1.273327 GCCCACCTCAATTTTCACCAG 59.727 52.381 0.00 0.00 0.00 4.00
2592 2706 2.875296 CCCACCTCAATTTTCACCAGA 58.125 47.619 0.00 0.00 0.00 3.86
2601 2715 5.890334 TCAATTTTCACCAGACTGTTGAAC 58.110 37.500 14.35 0.00 0.00 3.18
2619 2733 3.073798 TGAACACCATCTTGGCTTCCTTA 59.926 43.478 0.00 0.00 42.67 2.69
2669 2783 1.272760 CCTACTGTGGTCCACTCTCCT 60.273 57.143 22.56 3.58 35.11 3.69
2688 2802 0.251916 TCAGCCATTCCCACCTTACG 59.748 55.000 0.00 0.00 0.00 3.18
2712 2826 1.823470 AGCCAACGCTTGCAACTGA 60.823 52.632 0.00 0.00 45.55 3.41
2715 2829 0.662619 CCAACGCTTGCAACTGAAGA 59.337 50.000 0.00 0.00 0.00 2.87
2749 2863 2.845345 CCTCCAAGGCAAGTGGGGT 61.845 63.158 1.69 0.00 34.49 4.95
2758 2872 1.691219 CAAGTGGGGTGGGCTATGT 59.309 57.895 0.00 0.00 0.00 2.29
2759 2873 0.394352 CAAGTGGGGTGGGCTATGTC 60.394 60.000 0.00 0.00 0.00 3.06
2760 2874 1.910580 AAGTGGGGTGGGCTATGTCG 61.911 60.000 0.00 0.00 0.00 4.35
2761 2875 2.039787 TGGGGTGGGCTATGTCGA 59.960 61.111 0.00 0.00 0.00 4.20
2762 2876 2.363975 TGGGGTGGGCTATGTCGAC 61.364 63.158 9.11 9.11 0.00 4.20
2763 2877 2.363975 GGGGTGGGCTATGTCGACA 61.364 63.158 22.48 22.48 0.00 4.35
2764 2878 1.696097 GGGGTGGGCTATGTCGACAT 61.696 60.000 31.93 31.93 40.22 3.06
2765 2879 0.532862 GGGTGGGCTATGTCGACATG 60.533 60.000 35.46 25.83 37.15 3.21
2766 2880 0.178068 GGTGGGCTATGTCGACATGT 59.822 55.000 35.46 18.15 37.15 3.21
2767 2881 1.290203 GTGGGCTATGTCGACATGTG 58.710 55.000 35.46 27.63 37.15 3.21
2768 2882 0.901827 TGGGCTATGTCGACATGTGT 59.098 50.000 35.46 17.06 37.15 3.72
2769 2883 1.277842 TGGGCTATGTCGACATGTGTT 59.722 47.619 35.46 16.69 37.15 3.32
2770 2884 1.665679 GGGCTATGTCGACATGTGTTG 59.334 52.381 35.46 21.41 37.15 3.33
2771 2885 2.346803 GGCTATGTCGACATGTGTTGT 58.653 47.619 35.46 15.25 42.79 3.32
2772 2886 2.094258 GGCTATGTCGACATGTGTTGTG 59.906 50.000 35.46 18.54 39.18 3.33
2773 2887 2.993220 GCTATGTCGACATGTGTTGTGA 59.007 45.455 35.46 15.82 39.18 3.58
2774 2888 3.061295 GCTATGTCGACATGTGTTGTGAG 59.939 47.826 35.46 23.95 39.18 3.51
2775 2889 2.595124 TGTCGACATGTGTTGTGAGT 57.405 45.000 15.76 0.00 39.18 3.41
2776 2890 2.899976 TGTCGACATGTGTTGTGAGTT 58.100 42.857 15.76 0.00 39.18 3.01
2779 2893 4.155099 TGTCGACATGTGTTGTGAGTTTTT 59.845 37.500 15.76 0.00 39.18 1.94
2906 3020 3.254892 CGTTCTTGCTCCTCTAGAAACC 58.745 50.000 0.00 0.00 38.06 3.27
2931 3160 7.972277 CCATCAGGTATTCAGTTTTCTTTCATG 59.028 37.037 0.00 0.00 0.00 3.07
2932 3161 6.913170 TCAGGTATTCAGTTTTCTTTCATGC 58.087 36.000 0.00 0.00 0.00 4.06
2934 3163 7.177216 TCAGGTATTCAGTTTTCTTTCATGCAT 59.823 33.333 0.00 0.00 0.00 3.96
2951 3180 7.658525 TCATGCATACTTTCATTTTACCCAT 57.341 32.000 0.00 0.00 0.00 4.00
2953 3182 8.196771 TCATGCATACTTTCATTTTACCCATTC 58.803 33.333 0.00 0.00 0.00 2.67
2954 3183 7.716799 TGCATACTTTCATTTTACCCATTCT 57.283 32.000 0.00 0.00 0.00 2.40
2961 3190 9.143155 ACTTTCATTTTACCCATTCTAGTTTGT 57.857 29.630 0.00 0.00 0.00 2.83
2965 3194 7.870445 TCATTTTACCCATTCTAGTTTGTTTGC 59.130 33.333 0.00 0.00 0.00 3.68
2966 3195 6.716934 TTTACCCATTCTAGTTTGTTTGCA 57.283 33.333 0.00 0.00 0.00 4.08
2968 3197 5.138125 ACCCATTCTAGTTTGTTTGCATG 57.862 39.130 0.00 0.00 0.00 4.06
2969 3198 4.588528 ACCCATTCTAGTTTGTTTGCATGT 59.411 37.500 0.00 0.00 0.00 3.21
2970 3199 5.070313 ACCCATTCTAGTTTGTTTGCATGTT 59.930 36.000 0.00 0.00 0.00 2.71
2971 3200 5.634859 CCCATTCTAGTTTGTTTGCATGTTC 59.365 40.000 0.00 0.00 0.00 3.18
2972 3201 6.449698 CCATTCTAGTTTGTTTGCATGTTCT 58.550 36.000 0.00 0.00 0.00 3.01
2973 3202 7.309133 CCCATTCTAGTTTGTTTGCATGTTCTA 60.309 37.037 0.00 0.00 0.00 2.10
2974 3203 8.081633 CCATTCTAGTTTGTTTGCATGTTCTAA 58.918 33.333 0.00 0.00 0.00 2.10
2975 3204 9.462174 CATTCTAGTTTGTTTGCATGTTCTAAA 57.538 29.630 0.00 0.00 0.00 1.85
2976 3205 8.850454 TTCTAGTTTGTTTGCATGTTCTAAAC 57.150 30.769 0.00 2.75 35.46 2.01
2977 3206 7.422399 TCTAGTTTGTTTGCATGTTCTAAACC 58.578 34.615 0.00 0.00 34.32 3.27
2978 3207 5.356426 AGTTTGTTTGCATGTTCTAAACCC 58.644 37.500 0.00 0.00 34.32 4.11
2979 3208 5.128663 AGTTTGTTTGCATGTTCTAAACCCT 59.871 36.000 0.00 0.00 34.32 4.34
2980 3209 4.846779 TGTTTGCATGTTCTAAACCCTC 57.153 40.909 0.00 0.00 34.32 4.30
2981 3210 4.469657 TGTTTGCATGTTCTAAACCCTCT 58.530 39.130 0.00 0.00 34.32 3.69
2992 3272 8.331730 TGTTCTAAACCCTCTAAATAACAAGC 57.668 34.615 0.00 0.00 0.00 4.01
2995 3275 7.110155 TCTAAACCCTCTAAATAACAAGCAGG 58.890 38.462 0.00 0.00 0.00 4.85
2998 3278 4.200092 CCCTCTAAATAACAAGCAGGGAC 58.800 47.826 0.00 0.00 41.65 4.46
2999 3279 4.324254 CCCTCTAAATAACAAGCAGGGACA 60.324 45.833 0.00 0.00 41.65 4.02
3007 3287 2.726821 ACAAGCAGGGACACCATAATG 58.273 47.619 0.00 0.00 40.13 1.90
3016 3296 4.228210 AGGGACACCATAATGTCTGATTGT 59.772 41.667 5.92 0.00 46.85 2.71
3062 3342 5.221165 CGGTGTAGGGTCAAAACAGATTTTT 60.221 40.000 0.00 0.00 35.79 1.94
3158 3438 4.319333 CGCATCATTCCTACTCAAGCAATC 60.319 45.833 0.00 0.00 0.00 2.67
3186 3466 2.143122 ACACATTCGAGTGCGTCAAAT 58.857 42.857 7.97 0.00 43.23 2.32
3225 3505 5.163364 GCACAAGAGAGATGGAAAGAGGATA 60.163 44.000 0.00 0.00 0.00 2.59
3227 3507 5.070313 ACAAGAGAGATGGAAAGAGGATAGC 59.930 44.000 0.00 0.00 0.00 2.97
3229 3509 5.079643 AGAGAGATGGAAAGAGGATAGCTC 58.920 45.833 0.00 0.00 0.00 4.09
3248 3528 0.815615 CCCCAAAGATACAGCTCGGC 60.816 60.000 0.00 0.00 0.00 5.54
3305 3585 3.545124 AATCGCCGTTGGAGGTGCA 62.545 57.895 0.00 0.00 41.35 4.57
3320 3600 0.393537 GTGCAGCTGCTGGGATAGTT 60.394 55.000 36.61 0.00 42.66 2.24
3371 3651 3.963374 TCCTCAAGGTACATCAGATCTGG 59.037 47.826 22.42 9.99 36.34 3.86
3375 3655 2.324541 AGGTACATCAGATCTGGCTCC 58.675 52.381 22.42 16.19 0.00 4.70
3385 3665 5.382616 TCAGATCTGGCTCCGTATTAACTA 58.617 41.667 22.42 0.00 0.00 2.24
3507 3787 6.091441 CAGGAGATACTGACAAACTTTGTAGC 59.909 42.308 7.15 0.00 45.52 3.58
3508 3788 5.932303 GGAGATACTGACAAACTTTGTAGCA 59.068 40.000 7.15 2.08 45.52 3.49
3590 3870 7.549842 CCATTTGCCAATTCATTGATGTTCTAA 59.450 33.333 0.81 0.00 40.14 2.10
3696 3976 2.338015 GGCGTCGGTGGTCTCTACA 61.338 63.158 0.00 0.00 0.00 2.74
3811 4091 0.244994 GAGAAGAAGTCGCTGAGCCA 59.755 55.000 0.00 0.00 0.00 4.75
3815 4095 1.880340 GAAGTCGCTGAGCCATCCG 60.880 63.158 0.00 0.00 0.00 4.18
3825 4105 4.166888 GCCATCCGGAGCTGCTGA 62.167 66.667 11.34 1.98 0.00 4.26
3843 4123 3.790091 CTGATCATCGGAGCTCTTTCAA 58.210 45.455 14.64 0.00 0.00 2.69
3856 4138 3.126686 GCTCTTTCAAGTCAGGATTCAGC 59.873 47.826 0.00 0.00 0.00 4.26
3864 4146 4.473520 AGGATTCAGCGCCACCCG 62.474 66.667 2.29 0.00 40.75 5.28
3868 4150 3.344137 ATTCAGCGCCACCCGGAAT 62.344 57.895 0.73 1.42 37.44 3.01
3874 4156 1.078708 CGCCACCCGGAATGTTACT 60.079 57.895 0.73 0.00 0.00 2.24
3875 4157 1.087771 CGCCACCCGGAATGTTACTC 61.088 60.000 0.73 0.00 0.00 2.59
3908 4191 5.706369 CCATTCAAAGGGCATTTTCATTCAA 59.294 36.000 0.00 0.00 0.00 2.69
3909 4192 6.348704 CCATTCAAAGGGCATTTTCATTCAAC 60.349 38.462 0.00 0.00 0.00 3.18
3911 4194 4.347583 TCAAAGGGCATTTTCATTCAACCT 59.652 37.500 0.00 0.00 0.00 3.50
3914 4197 5.308976 AGGGCATTTTCATTCAACCTTTT 57.691 34.783 0.00 0.00 0.00 2.27
3995 4282 4.918588 TGGGAGAAACTTAGAAATGGGAC 58.081 43.478 0.00 0.00 0.00 4.46
4189 4478 2.660064 CCGAGGTGGTCAAGGAGGG 61.660 68.421 0.00 0.00 0.00 4.30
4389 4691 2.293955 TGCTTGTGTGTGGATTGTCATG 59.706 45.455 0.00 0.00 0.00 3.07
4472 5514 8.101654 AGTTACATAAAATTTACGCCAGTTGA 57.898 30.769 0.00 0.00 0.00 3.18
4555 5875 6.803366 ATTAGTGAGGGGAAGTTACGTAAT 57.197 37.500 11.86 0.00 0.00 1.89
4579 5900 2.427232 TGTAACACTGTCGTAGGTGC 57.573 50.000 0.00 0.00 36.99 5.01
4602 5923 5.634896 CAGGATTATTGCACTTGACAGTTC 58.365 41.667 0.00 0.00 0.00 3.01
4637 5958 0.679505 TTACTCGCCTGACAGTTGCT 59.320 50.000 0.93 0.00 0.00 3.91
4638 5959 0.038251 TACTCGCCTGACAGTTGCTG 60.038 55.000 0.93 0.00 37.52 4.41
4640 5961 0.882042 CTCGCCTGACAGTTGCTGTT 60.882 55.000 0.93 0.00 45.44 3.16
4641 5962 1.159713 TCGCCTGACAGTTGCTGTTG 61.160 55.000 0.93 0.80 45.44 3.33
4642 5963 1.008079 GCCTGACAGTTGCTGTTGC 60.008 57.895 0.93 3.98 45.44 4.17
4677 5998 3.815507 TCCTCTCCAGGAAAATAAGGGT 58.184 45.455 0.00 0.00 46.84 4.34
4700 6021 1.621317 TCGTGGGCATACAGTTTCTCA 59.379 47.619 0.00 0.00 0.00 3.27
4714 6035 5.127682 ACAGTTTCTCATTTTGGTGAAAGCT 59.872 36.000 0.00 0.00 33.76 3.74
4722 6043 0.106268 TTGGTGAAAGCTGGCAAGGA 60.106 50.000 0.00 0.00 33.76 3.36
4743 6064 0.615850 GTGGTTTCCTCCTCCTCTGG 59.384 60.000 0.00 0.00 0.00 3.86
4744 6065 1.201429 TGGTTTCCTCCTCCTCTGGC 61.201 60.000 0.00 0.00 0.00 4.85
4745 6066 0.912006 GGTTTCCTCCTCCTCTGGCT 60.912 60.000 0.00 0.00 0.00 4.75
4779 6100 1.541620 GGTGGAGGAGGGGGTCTTT 60.542 63.158 0.00 0.00 0.00 2.52
4806 6132 2.819608 TGTGCTTTTTCATAGGTGGAGC 59.180 45.455 0.00 0.00 0.00 4.70
4826 6152 0.319211 TAGTCTTTCGTGTGGTGGCG 60.319 55.000 0.00 0.00 0.00 5.69
4849 6175 0.108804 GAAGGATGAGAACGACGCCA 60.109 55.000 0.00 0.00 0.00 5.69
4932 6260 1.296392 CCGATGGCCTTGACTGTCA 59.704 57.895 6.36 6.36 0.00 3.58
4996 6324 1.939934 TCTCCGACAGTTGCTGTTTTG 59.060 47.619 3.16 0.00 45.44 2.44
5022 6350 1.557269 GGTGTCAGAGGCTGGGTGAT 61.557 60.000 0.00 0.00 31.51 3.06
5083 6411 4.047125 CCGTCTTGGGGCCCATGT 62.047 66.667 31.12 0.00 31.53 3.21
5084 6412 2.751436 CGTCTTGGGGCCCATGTG 60.751 66.667 31.12 22.72 31.53 3.21
5085 6413 2.763215 GTCTTGGGGCCCATGTGA 59.237 61.111 31.12 23.65 31.53 3.58
5086 6414 1.076549 GTCTTGGGGCCCATGTGAA 59.923 57.895 31.12 15.23 31.53 3.18
5087 6415 0.967380 GTCTTGGGGCCCATGTGAAG 60.967 60.000 31.12 23.20 31.53 3.02
5088 6416 1.683365 CTTGGGGCCCATGTGAAGG 60.683 63.158 29.34 7.01 31.53 3.46
5089 6417 2.153898 CTTGGGGCCCATGTGAAGGA 62.154 60.000 29.34 7.75 31.53 3.36
5090 6418 1.734420 TTGGGGCCCATGTGAAGGAA 61.734 55.000 29.34 4.55 31.53 3.36
5091 6419 1.078347 GGGGCCCATGTGAAGGAAA 59.922 57.895 26.86 0.00 0.00 3.13
5092 6420 0.325577 GGGGCCCATGTGAAGGAAAT 60.326 55.000 26.86 0.00 0.00 2.17
5093 6421 1.063266 GGGGCCCATGTGAAGGAAATA 60.063 52.381 26.86 0.00 0.00 1.40
5094 6422 2.426268 GGGGCCCATGTGAAGGAAATAT 60.426 50.000 26.86 0.00 0.00 1.28
5095 6423 2.629617 GGGCCCATGTGAAGGAAATATG 59.370 50.000 19.95 0.00 0.00 1.78
5096 6424 2.036346 GGCCCATGTGAAGGAAATATGC 59.964 50.000 0.00 0.00 0.00 3.14
5097 6425 2.036346 GCCCATGTGAAGGAAATATGCC 59.964 50.000 0.00 0.00 0.00 4.40
5098 6426 2.629617 CCCATGTGAAGGAAATATGCCC 59.370 50.000 0.00 0.00 0.00 5.36
5099 6427 3.569491 CCATGTGAAGGAAATATGCCCT 58.431 45.455 0.00 0.00 0.00 5.19
5100 6428 4.447616 CCCATGTGAAGGAAATATGCCCTA 60.448 45.833 0.00 0.00 31.36 3.53
5101 6429 4.763793 CCATGTGAAGGAAATATGCCCTAG 59.236 45.833 0.00 0.00 31.36 3.02
5102 6430 5.456619 CCATGTGAAGGAAATATGCCCTAGA 60.457 44.000 0.00 0.00 31.36 2.43
5103 6431 5.296151 TGTGAAGGAAATATGCCCTAGAG 57.704 43.478 0.00 0.00 31.36 2.43
5104 6432 4.103153 TGTGAAGGAAATATGCCCTAGAGG 59.897 45.833 0.00 0.00 39.47 3.69
5120 6448 7.881775 CCCTAGAGGCAATAATAAAGTTGTT 57.118 36.000 0.00 0.00 0.00 2.83
5121 6449 8.974060 CCCTAGAGGCAATAATAAAGTTGTTA 57.026 34.615 0.00 0.00 0.00 2.41
5122 6450 9.574516 CCCTAGAGGCAATAATAAAGTTGTTAT 57.425 33.333 0.00 0.00 0.00 1.89
5181 6509 8.848474 ATTCATCCTAGAATTGTATTAACCGG 57.152 34.615 0.00 0.00 34.70 5.28
5182 6510 7.606135 TCATCCTAGAATTGTATTAACCGGA 57.394 36.000 9.46 0.00 0.00 5.14
5183 6511 8.025270 TCATCCTAGAATTGTATTAACCGGAA 57.975 34.615 9.46 0.00 0.00 4.30
5184 6512 8.487848 TCATCCTAGAATTGTATTAACCGGAAA 58.512 33.333 9.46 1.61 0.00 3.13
5185 6513 8.557029 CATCCTAGAATTGTATTAACCGGAAAC 58.443 37.037 9.46 0.00 0.00 2.78
5186 6514 7.854337 TCCTAGAATTGTATTAACCGGAAACT 58.146 34.615 9.46 0.00 0.00 2.66
5187 6515 8.323567 TCCTAGAATTGTATTAACCGGAAACTT 58.676 33.333 9.46 0.00 0.00 2.66
5188 6516 9.603921 CCTAGAATTGTATTAACCGGAAACTTA 57.396 33.333 9.46 0.00 0.00 2.24
5193 6521 9.723601 AATTGTATTAACCGGAAACTTAGTACA 57.276 29.630 9.46 10.88 28.23 2.90
5194 6522 9.895138 ATTGTATTAACCGGAAACTTAGTACAT 57.105 29.630 9.46 2.28 29.53 2.29
5195 6523 8.706492 TGTATTAACCGGAAACTTAGTACATG 57.294 34.615 9.46 0.00 0.00 3.21
5196 6524 8.313292 TGTATTAACCGGAAACTTAGTACATGT 58.687 33.333 9.46 2.69 0.00 3.21
5197 6525 7.605410 ATTAACCGGAAACTTAGTACATGTG 57.395 36.000 9.46 0.00 0.00 3.21
5198 6526 4.612264 ACCGGAAACTTAGTACATGTGT 57.388 40.909 9.46 0.00 0.00 3.72
5199 6527 4.312443 ACCGGAAACTTAGTACATGTGTG 58.688 43.478 9.46 0.00 0.00 3.82
5200 6528 4.039488 ACCGGAAACTTAGTACATGTGTGA 59.961 41.667 9.46 0.00 0.00 3.58
5201 6529 4.992319 CCGGAAACTTAGTACATGTGTGAA 59.008 41.667 9.11 0.00 0.00 3.18
5202 6530 5.642063 CCGGAAACTTAGTACATGTGTGAAT 59.358 40.000 9.11 0.00 0.00 2.57
5203 6531 6.814644 CCGGAAACTTAGTACATGTGTGAATA 59.185 38.462 9.11 0.00 0.00 1.75
5204 6532 7.201496 CCGGAAACTTAGTACATGTGTGAATAC 60.201 40.741 9.11 0.00 0.00 1.89
5205 6533 7.329962 CGGAAACTTAGTACATGTGTGAATACA 59.670 37.037 9.11 0.00 34.63 2.29
5206 6534 9.162764 GGAAACTTAGTACATGTGTGAATACAT 57.837 33.333 9.11 0.00 41.77 2.29
5214 6542 9.719355 AGTACATGTGTGAATACATAGACAAAA 57.281 29.630 9.11 0.00 39.17 2.44
5215 6543 9.755064 GTACATGTGTGAATACATAGACAAAAC 57.245 33.333 9.11 0.00 39.17 2.43
5216 6544 8.389779 ACATGTGTGAATACATAGACAAAACA 57.610 30.769 0.00 0.00 39.17 2.83
5217 6545 8.506437 ACATGTGTGAATACATAGACAAAACAG 58.494 33.333 0.00 0.00 39.17 3.16
5218 6546 8.720562 CATGTGTGAATACATAGACAAAACAGA 58.279 33.333 0.00 0.00 39.17 3.41
5219 6547 8.310406 TGTGTGAATACATAGACAAAACAGAG 57.690 34.615 0.00 0.00 39.39 3.35
5220 6548 7.931407 TGTGTGAATACATAGACAAAACAGAGT 59.069 33.333 0.00 0.00 39.39 3.24
5221 6549 8.223769 GTGTGAATACATAGACAAAACAGAGTG 58.776 37.037 0.00 0.00 39.39 3.51
5222 6550 7.931407 TGTGAATACATAGACAAAACAGAGTGT 59.069 33.333 0.00 0.00 0.00 3.55
5223 6551 8.436200 GTGAATACATAGACAAAACAGAGTGTC 58.564 37.037 0.00 0.00 43.70 3.67
5224 6552 7.602644 TGAATACATAGACAAAACAGAGTGTCC 59.397 37.037 0.36 0.00 44.30 4.02
5225 6553 4.642429 ACATAGACAAAACAGAGTGTCCC 58.358 43.478 0.36 0.00 44.30 4.46
5226 6554 4.348168 ACATAGACAAAACAGAGTGTCCCT 59.652 41.667 0.36 0.00 44.30 4.20
5227 6555 5.542635 ACATAGACAAAACAGAGTGTCCCTA 59.457 40.000 0.36 0.00 44.30 3.53
5228 6556 4.608948 AGACAAAACAGAGTGTCCCTAG 57.391 45.455 0.36 0.00 44.30 3.02
5229 6557 3.967987 AGACAAAACAGAGTGTCCCTAGT 59.032 43.478 0.36 0.00 44.30 2.57
5230 6558 5.145564 AGACAAAACAGAGTGTCCCTAGTA 58.854 41.667 0.36 0.00 44.30 1.82
5231 6559 5.780793 AGACAAAACAGAGTGTCCCTAGTAT 59.219 40.000 0.36 0.00 44.30 2.12
5232 6560 5.794894 ACAAAACAGAGTGTCCCTAGTATG 58.205 41.667 0.00 0.00 0.00 2.39
5233 6561 4.473477 AAACAGAGTGTCCCTAGTATGC 57.527 45.455 0.00 0.00 0.00 3.14
5234 6562 2.389715 ACAGAGTGTCCCTAGTATGCC 58.610 52.381 0.00 0.00 0.00 4.40
5235 6563 2.023888 ACAGAGTGTCCCTAGTATGCCT 60.024 50.000 0.00 0.00 0.00 4.75
5236 6564 2.625790 CAGAGTGTCCCTAGTATGCCTC 59.374 54.545 0.00 0.00 0.00 4.70
5237 6565 2.516277 AGAGTGTCCCTAGTATGCCTCT 59.484 50.000 0.00 0.00 0.00 3.69
5238 6566 3.722627 AGAGTGTCCCTAGTATGCCTCTA 59.277 47.826 0.00 0.00 0.00 2.43
5239 6567 3.822167 GAGTGTCCCTAGTATGCCTCTAC 59.178 52.174 0.00 0.00 0.00 2.59
5240 6568 3.464080 AGTGTCCCTAGTATGCCTCTACT 59.536 47.826 0.00 0.00 36.04 2.57
5241 6569 4.079096 AGTGTCCCTAGTATGCCTCTACTT 60.079 45.833 0.00 0.00 33.96 2.24
5242 6570 4.038162 GTGTCCCTAGTATGCCTCTACTTG 59.962 50.000 0.00 0.00 33.96 3.16
5243 6571 4.079385 TGTCCCTAGTATGCCTCTACTTGA 60.079 45.833 0.00 0.00 33.96 3.02
5244 6572 4.278919 GTCCCTAGTATGCCTCTACTTGAC 59.721 50.000 0.00 0.00 33.96 3.18
5245 6573 4.168283 TCCCTAGTATGCCTCTACTTGACT 59.832 45.833 0.00 0.00 33.96 3.41
5246 6574 5.371769 TCCCTAGTATGCCTCTACTTGACTA 59.628 44.000 0.00 0.00 33.96 2.59
5247 6575 5.708230 CCCTAGTATGCCTCTACTTGACTAG 59.292 48.000 0.00 0.00 36.32 2.57
5248 6576 5.182380 CCTAGTATGCCTCTACTTGACTAGC 59.818 48.000 0.00 0.00 35.60 3.42
5249 6577 4.798882 AGTATGCCTCTACTTGACTAGCT 58.201 43.478 0.00 0.00 0.00 3.32
5250 6578 4.825085 AGTATGCCTCTACTTGACTAGCTC 59.175 45.833 0.00 0.00 0.00 4.09
5251 6579 3.087370 TGCCTCTACTTGACTAGCTCA 57.913 47.619 0.00 0.00 0.00 4.26
5252 6580 3.636679 TGCCTCTACTTGACTAGCTCAT 58.363 45.455 0.00 0.00 0.00 2.90
5253 6581 4.026744 TGCCTCTACTTGACTAGCTCATT 58.973 43.478 0.00 0.00 0.00 2.57
5254 6582 4.098654 TGCCTCTACTTGACTAGCTCATTC 59.901 45.833 0.00 0.00 0.00 2.67
5255 6583 4.098654 GCCTCTACTTGACTAGCTCATTCA 59.901 45.833 0.00 0.00 0.00 2.57
5256 6584 5.221422 GCCTCTACTTGACTAGCTCATTCAT 60.221 44.000 0.00 0.00 0.00 2.57
5257 6585 6.446318 CCTCTACTTGACTAGCTCATTCATC 58.554 44.000 0.00 0.00 0.00 2.92
5258 6586 6.040278 CCTCTACTTGACTAGCTCATTCATCA 59.960 42.308 0.00 0.00 0.00 3.07
5259 6587 7.410120 TCTACTTGACTAGCTCATTCATCAA 57.590 36.000 0.00 0.00 0.00 2.57
5260 6588 7.840931 TCTACTTGACTAGCTCATTCATCAAA 58.159 34.615 0.00 0.00 0.00 2.69
5261 6589 6.981762 ACTTGACTAGCTCATTCATCAAAG 57.018 37.500 0.00 0.00 0.00 2.77
5262 6590 6.705302 ACTTGACTAGCTCATTCATCAAAGA 58.295 36.000 0.00 0.00 0.00 2.52
5263 6591 7.337167 ACTTGACTAGCTCATTCATCAAAGAT 58.663 34.615 0.00 0.00 0.00 2.40
5264 6592 7.280428 ACTTGACTAGCTCATTCATCAAAGATG 59.720 37.037 0.00 0.62 0.00 2.90
5265 6593 6.053650 TGACTAGCTCATTCATCAAAGATGG 58.946 40.000 7.11 0.00 0.00 3.51
5266 6594 5.999044 ACTAGCTCATTCATCAAAGATGGT 58.001 37.500 7.11 0.00 0.00 3.55
5267 6595 6.421485 ACTAGCTCATTCATCAAAGATGGTT 58.579 36.000 7.11 0.00 0.00 3.67
5268 6596 7.568349 ACTAGCTCATTCATCAAAGATGGTTA 58.432 34.615 7.11 0.00 0.00 2.85
5269 6597 8.049117 ACTAGCTCATTCATCAAAGATGGTTAA 58.951 33.333 7.11 0.00 0.00 2.01
5270 6598 7.330900 AGCTCATTCATCAAAGATGGTTAAG 57.669 36.000 7.11 2.78 0.00 1.85
5271 6599 6.888632 AGCTCATTCATCAAAGATGGTTAAGT 59.111 34.615 7.11 0.00 0.00 2.24
5272 6600 7.395489 AGCTCATTCATCAAAGATGGTTAAGTT 59.605 33.333 7.11 0.00 0.00 2.66
5273 6601 8.031277 GCTCATTCATCAAAGATGGTTAAGTTT 58.969 33.333 7.11 0.00 0.00 2.66
5274 6602 9.565213 CTCATTCATCAAAGATGGTTAAGTTTC 57.435 33.333 7.11 0.00 0.00 2.78
5275 6603 8.522830 TCATTCATCAAAGATGGTTAAGTTTCC 58.477 33.333 7.11 0.00 0.00 3.13
5276 6604 8.526147 CATTCATCAAAGATGGTTAAGTTTCCT 58.474 33.333 7.11 0.00 0.00 3.36
5277 6605 7.452880 TCATCAAAGATGGTTAAGTTTCCTG 57.547 36.000 7.11 0.00 0.00 3.86
5278 6606 7.230747 TCATCAAAGATGGTTAAGTTTCCTGA 58.769 34.615 7.11 0.00 0.00 3.86
5279 6607 6.877611 TCAAAGATGGTTAAGTTTCCTGAC 57.122 37.500 0.00 0.00 0.00 3.51
5280 6608 5.768164 TCAAAGATGGTTAAGTTTCCTGACC 59.232 40.000 0.00 0.00 0.00 4.02
5281 6609 4.993705 AGATGGTTAAGTTTCCTGACCA 57.006 40.909 0.00 0.00 40.18 4.02
5282 6610 5.520748 AGATGGTTAAGTTTCCTGACCAT 57.479 39.130 6.05 6.05 44.70 3.55
5283 6611 5.256474 AGATGGTTAAGTTTCCTGACCATG 58.744 41.667 10.73 0.00 43.30 3.66
5284 6612 3.761897 TGGTTAAGTTTCCTGACCATGG 58.238 45.455 11.19 11.19 34.52 3.66
5285 6613 3.396276 TGGTTAAGTTTCCTGACCATGGA 59.604 43.478 21.47 0.00 34.52 3.41
5286 6614 3.756963 GGTTAAGTTTCCTGACCATGGAC 59.243 47.826 21.47 13.94 32.65 4.02
5287 6615 4.394729 GTTAAGTTTCCTGACCATGGACA 58.605 43.478 21.47 18.47 32.65 4.02
5288 6616 3.814504 AAGTTTCCTGACCATGGACAT 57.185 42.857 21.47 0.00 32.65 3.06
5289 6617 3.077484 AGTTTCCTGACCATGGACATG 57.923 47.619 21.47 15.89 38.51 3.21
5290 6618 2.376518 AGTTTCCTGACCATGGACATGT 59.623 45.455 21.47 0.00 37.11 3.21
5291 6619 2.489329 GTTTCCTGACCATGGACATGTG 59.511 50.000 21.47 10.19 37.11 3.21
5292 6620 1.361204 TCCTGACCATGGACATGTGT 58.639 50.000 21.47 8.43 37.11 3.72
5293 6621 1.704628 TCCTGACCATGGACATGTGTT 59.295 47.619 21.47 0.00 37.11 3.32
5294 6622 1.814394 CCTGACCATGGACATGTGTTG 59.186 52.381 21.47 5.31 37.11 3.33
5295 6623 2.507484 CTGACCATGGACATGTGTTGT 58.493 47.619 21.47 2.17 42.79 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 0.468029 CTCAGTTGCACCCACCCTTT 60.468 55.000 0.00 0.00 0.00 3.11
54 55 2.027745 GTCAATCTCTCCCTCAGTTGCA 60.028 50.000 0.00 0.00 0.00 4.08
135 136 1.135139 ACCGATCTCCGTGTCATTGAG 59.865 52.381 0.00 0.00 36.31 3.02
140 141 1.601419 GGGAACCGATCTCCGTGTCA 61.601 60.000 0.00 0.00 40.86 3.58
141 142 1.141234 GGGAACCGATCTCCGTGTC 59.859 63.158 0.00 0.00 40.86 3.67
142 143 3.295800 GGGAACCGATCTCCGTGT 58.704 61.111 0.00 0.00 40.86 4.49
175 178 1.374758 GTTCCCCTGACGACTGCAG 60.375 63.158 13.48 13.48 0.00 4.41
178 181 3.362262 TCGTTCCCCTGACGACTG 58.638 61.111 0.00 0.00 43.79 3.51
224 227 1.003331 CCGATCGACTCCTCTTCTTCG 60.003 57.143 18.66 0.00 0.00 3.79
235 238 2.299521 CCCTCTCTAAACCGATCGACT 58.700 52.381 18.66 0.00 0.00 4.18
253 256 3.553904 AGACAAGACGATCTACTACCCC 58.446 50.000 0.00 0.00 0.00 4.95
271 274 3.674955 GCTCTCTCTCCCTCGAAAAAGAC 60.675 52.174 0.00 0.00 0.00 3.01
421 424 1.135286 GCCACATTAGCACTTTCAGCC 60.135 52.381 0.00 0.00 0.00 4.85
462 465 9.905713 AATAACCTATTTCTCTTAACATGCAGA 57.094 29.630 0.00 0.00 0.00 4.26
463 466 9.941664 CAATAACCTATTTCTCTTAACATGCAG 57.058 33.333 0.00 0.00 0.00 4.41
476 479 9.025041 CCTAATTCATCCCCAATAACCTATTTC 57.975 37.037 0.00 0.00 0.00 2.17
502 509 8.305317 AGCGGGAGAACTACAAATCTATAATAC 58.695 37.037 0.00 0.00 0.00 1.89
552 559 9.107177 CATATCCTGCAAACCATAGAGATATTC 57.893 37.037 0.00 0.00 0.00 1.75
584 595 2.416893 GGCATTTTCGAAGACAGAGACC 59.583 50.000 0.00 0.00 34.32 3.85
758 776 2.411748 TCTCGCGTGATGTGAACATTTC 59.588 45.455 5.77 0.00 36.47 2.17
997 1073 3.550431 ATCCTCGACGCCCATGGG 61.550 66.667 27.87 27.87 38.57 4.00
1076 1164 0.031585 CAGTCCGTCGTCCTTGAACA 59.968 55.000 0.00 0.00 0.00 3.18
1132 1226 2.893398 CCTGACTGCTACGTCCCC 59.107 66.667 0.00 0.00 32.97 4.81
1253 1347 0.598065 ACAATGCCTCCAAACGAAGC 59.402 50.000 0.00 0.00 0.00 3.86
1495 1589 8.653191 TGGAGTCATACTAGTAAAAACAAGGAA 58.347 33.333 6.70 0.00 0.00 3.36
1496 1590 8.197592 TGGAGTCATACTAGTAAAAACAAGGA 57.802 34.615 6.70 0.00 0.00 3.36
1497 1591 8.883731 CATGGAGTCATACTAGTAAAAACAAGG 58.116 37.037 6.70 0.00 31.33 3.61
1498 1592 8.883731 CCATGGAGTCATACTAGTAAAAACAAG 58.116 37.037 5.56 0.00 31.33 3.16
1591 1693 4.618912 CGAAAAACACAACAACACATGTCA 59.381 37.500 0.00 0.00 42.99 3.58
1604 1706 2.129607 GGCGTACTCTCGAAAAACACA 58.870 47.619 0.00 0.00 0.00 3.72
1605 1707 2.129607 TGGCGTACTCTCGAAAAACAC 58.870 47.619 0.00 0.00 0.00 3.32
1606 1708 2.512485 TGGCGTACTCTCGAAAAACA 57.488 45.000 0.00 0.00 0.00 2.83
1607 1709 3.424433 CCATTGGCGTACTCTCGAAAAAC 60.424 47.826 0.00 0.00 0.00 2.43
1724 1833 4.884247 AGAGTGACCTAGTTTGTTGTAGC 58.116 43.478 0.00 0.00 0.00 3.58
1733 1842 4.931661 TTCGTGAAAGAGTGACCTAGTT 57.068 40.909 0.00 0.00 0.00 2.24
1747 1857 2.301009 GGAGGTTAGACCCTTTCGTGAA 59.699 50.000 0.00 0.00 39.75 3.18
1752 1862 3.409570 GTGTTGGAGGTTAGACCCTTTC 58.590 50.000 0.00 0.00 39.75 2.62
1778 1890 1.687493 GGAGTGGAGGCTAGCTGGT 60.687 63.158 15.72 0.00 0.00 4.00
1786 1898 1.574263 AGAGGTTAAGGAGTGGAGGC 58.426 55.000 0.00 0.00 0.00 4.70
1793 1905 4.810191 AGTGTTGCTAGAGGTTAAGGAG 57.190 45.455 0.00 0.00 0.00 3.69
1799 1911 4.899352 AGATCAAGTGTTGCTAGAGGTT 57.101 40.909 0.00 0.00 0.00 3.50
1852 1964 0.033796 ATGCCAGGGTGTTCCATCAG 60.034 55.000 0.00 0.00 38.24 2.90
1854 1966 1.106285 GAATGCCAGGGTGTTCCATC 58.894 55.000 0.00 0.00 38.24 3.51
1930 2043 2.733956 AGGAACTTCACAGGCAAAACA 58.266 42.857 0.00 0.00 27.25 2.83
2017 2130 2.030562 CACCGGTGCTTCGAGGTT 59.969 61.111 24.02 0.00 34.25 3.50
2137 2250 1.076995 TTCTGATCGGAGGGCGAGA 60.077 57.895 4.04 0.00 0.00 4.04
2140 2253 1.066587 GACTTCTGATCGGAGGGCG 59.933 63.158 17.21 4.98 0.00 6.13
2161 2274 1.669265 CTCACCGTGCAGTATCGACTA 59.331 52.381 0.00 0.00 33.32 2.59
2239 2352 0.105964 TGGGATTAACCAGATCGCCG 59.894 55.000 0.00 0.00 41.20 6.46
2242 2355 2.549754 GTGCATGGGATTAACCAGATCG 59.450 50.000 0.00 0.00 45.20 3.69
2303 2416 0.975556 TTCTACTGGCCTGCGGATGA 60.976 55.000 9.95 0.00 0.00 2.92
2327 2440 0.035458 AGGAACGAGGAGCAAACTGG 59.965 55.000 0.00 0.00 0.00 4.00
2412 2525 1.136305 GCTTGGTCTAGGACGTGCATA 59.864 52.381 10.52 0.00 32.65 3.14
2457 2571 2.280797 GCTCGCAACACCAGGACA 60.281 61.111 0.00 0.00 0.00 4.02
2487 2601 3.118629 TCGCTCCAACTATCATTGAGCTT 60.119 43.478 8.03 0.00 33.88 3.74
2555 2669 0.399833 GGGCAATGGAGAGAGGATCC 59.600 60.000 2.48 2.48 37.35 3.36
2591 2705 2.030805 GCCAAGATGGTGTTCAACAGTC 60.031 50.000 0.00 0.00 40.46 3.51
2592 2706 1.956477 GCCAAGATGGTGTTCAACAGT 59.044 47.619 0.00 0.00 40.46 3.55
2601 2715 4.162040 AGATAAGGAAGCCAAGATGGTG 57.838 45.455 0.00 0.00 40.46 4.17
2619 2733 3.702792 AGGTATCCCGATGATCGAAGAT 58.297 45.455 17.52 18.55 43.74 2.40
2669 2783 0.251916 CGTAAGGTGGGAATGGCTGA 59.748 55.000 0.00 0.00 0.00 4.26
2712 2826 3.829026 GAGGGCTTGGAGTGAAAAATCTT 59.171 43.478 0.00 0.00 0.00 2.40
2715 2829 2.158325 TGGAGGGCTTGGAGTGAAAAAT 60.158 45.455 0.00 0.00 0.00 1.82
2749 2863 0.901827 ACACATGTCGACATAGCCCA 59.098 50.000 29.52 0.81 34.26 5.36
2758 2872 4.955925 AAAAACTCACAACACATGTCGA 57.044 36.364 0.00 0.00 41.46 4.20
2779 2893 5.319043 AGGTTCTTGGGTTCTGATGTAAA 57.681 39.130 0.00 0.00 0.00 2.01
2793 2907 7.015877 GTCTGCGTTAGAAATTAAGGTTCTTG 58.984 38.462 8.93 3.18 37.12 3.02
2906 3020 7.487189 GCATGAAAGAAAACTGAATACCTGATG 59.513 37.037 0.00 0.00 0.00 3.07
2923 3152 8.250332 GGGTAAAATGAAAGTATGCATGAAAGA 58.750 33.333 10.16 0.00 0.00 2.52
2931 3160 8.903820 ACTAGAATGGGTAAAATGAAAGTATGC 58.096 33.333 0.00 0.00 0.00 3.14
2951 3180 7.918562 GGTTTAGAACATGCAAACAAACTAGAA 59.081 33.333 0.00 0.00 34.55 2.10
2953 3182 6.640907 GGGTTTAGAACATGCAAACAAACTAG 59.359 38.462 12.19 0.00 34.55 2.57
2954 3183 6.322712 AGGGTTTAGAACATGCAAACAAACTA 59.677 34.615 12.19 0.00 34.55 2.24
2959 3188 4.469657 AGAGGGTTTAGAACATGCAAACA 58.530 39.130 12.19 0.00 34.55 2.83
2960 3189 6.569179 TTAGAGGGTTTAGAACATGCAAAC 57.431 37.500 0.00 0.00 0.00 2.93
2961 3190 7.775053 ATTTAGAGGGTTTAGAACATGCAAA 57.225 32.000 0.00 0.00 0.00 3.68
2963 3192 7.885922 TGTTATTTAGAGGGTTTAGAACATGCA 59.114 33.333 0.00 0.00 0.00 3.96
2966 3195 8.957466 GCTTGTTATTTAGAGGGTTTAGAACAT 58.043 33.333 0.00 0.00 0.00 2.71
2968 3197 8.331730 TGCTTGTTATTTAGAGGGTTTAGAAC 57.668 34.615 0.00 0.00 0.00 3.01
2969 3198 7.610305 CCTGCTTGTTATTTAGAGGGTTTAGAA 59.390 37.037 0.00 0.00 0.00 2.10
2970 3199 7.110155 CCTGCTTGTTATTTAGAGGGTTTAGA 58.890 38.462 0.00 0.00 0.00 2.10
2971 3200 6.318900 CCCTGCTTGTTATTTAGAGGGTTTAG 59.681 42.308 0.00 0.00 34.96 1.85
2972 3201 6.012333 TCCCTGCTTGTTATTTAGAGGGTTTA 60.012 38.462 0.00 0.00 39.84 2.01
2973 3202 5.016831 CCCTGCTTGTTATTTAGAGGGTTT 58.983 41.667 0.00 0.00 34.96 3.27
2974 3203 4.291249 TCCCTGCTTGTTATTTAGAGGGTT 59.709 41.667 0.00 0.00 39.84 4.11
2975 3204 3.850173 TCCCTGCTTGTTATTTAGAGGGT 59.150 43.478 0.00 0.00 39.84 4.34
2976 3205 4.200092 GTCCCTGCTTGTTATTTAGAGGG 58.800 47.826 0.00 0.00 40.19 4.30
2977 3206 4.636206 GTGTCCCTGCTTGTTATTTAGAGG 59.364 45.833 0.00 0.00 0.00 3.69
2978 3207 4.636206 GGTGTCCCTGCTTGTTATTTAGAG 59.364 45.833 0.00 0.00 0.00 2.43
2979 3208 4.042311 TGGTGTCCCTGCTTGTTATTTAGA 59.958 41.667 0.00 0.00 0.00 2.10
2980 3209 4.331968 TGGTGTCCCTGCTTGTTATTTAG 58.668 43.478 0.00 0.00 0.00 1.85
2981 3210 4.374689 TGGTGTCCCTGCTTGTTATTTA 57.625 40.909 0.00 0.00 0.00 1.40
3016 3296 4.036262 CGACAACCATTCTTGTCCTGAAAA 59.964 41.667 6.50 0.00 44.96 2.29
3062 3342 3.657398 ATGATCTCCATGAAACTGCCA 57.343 42.857 0.00 0.00 33.39 4.92
3166 3446 1.577468 TTTGACGCACTCGAATGTGT 58.423 45.000 13.54 13.54 45.84 3.72
3186 3466 3.690280 TGCCGACGTCATGCTCCA 61.690 61.111 22.79 5.34 0.00 3.86
3225 3505 1.488393 GAGCTGTATCTTTGGGGAGCT 59.512 52.381 0.00 0.00 39.46 4.09
3227 3507 1.202580 CCGAGCTGTATCTTTGGGGAG 60.203 57.143 0.00 0.00 0.00 4.30
3229 3509 0.815615 GCCGAGCTGTATCTTTGGGG 60.816 60.000 0.00 0.00 0.00 4.96
3248 3528 1.991430 CAGCTCGATCGTCAAACCG 59.009 57.895 15.94 0.00 0.00 4.44
3302 3582 1.139654 CTAACTATCCCAGCAGCTGCA 59.860 52.381 38.24 20.06 45.16 4.41
3305 3585 1.139853 GTGCTAACTATCCCAGCAGCT 59.860 52.381 0.00 0.00 45.41 4.24
3308 3588 4.469945 ACTAAAGTGCTAACTATCCCAGCA 59.530 41.667 0.00 0.00 42.77 4.41
3371 3651 8.813643 ATCATTGTAGTTAGTTAATACGGAGC 57.186 34.615 0.00 0.00 0.00 4.70
3400 3680 9.173021 TCATCGATAGTAACCATCAAATTTGTT 57.827 29.630 17.47 7.00 37.40 2.83
3507 3787 9.093970 ACATTCACATCAAATGCAAAGATATTG 57.906 29.630 0.00 0.00 37.58 1.90
3508 3788 9.093970 CACATTCACATCAAATGCAAAGATATT 57.906 29.630 0.00 0.00 37.58 1.28
3573 3853 7.828223 AGACAGAGCTTAGAACATCAATGAATT 59.172 33.333 0.00 0.00 0.00 2.17
3578 3858 6.291648 TGAGACAGAGCTTAGAACATCAAT 57.708 37.500 0.00 0.00 0.00 2.57
3590 3870 1.391157 GGCGATCCTGAGACAGAGCT 61.391 60.000 0.00 0.00 32.44 4.09
3686 3966 0.178932 ACAGGCCAGTGTAGAGACCA 60.179 55.000 5.01 0.00 0.00 4.02
3722 4002 2.615912 GCATGTGCTGTAAGGGAGAATC 59.384 50.000 0.00 0.00 38.21 2.52
3725 4005 3.861341 GCATGTGCTGTAAGGGAGA 57.139 52.632 0.00 0.00 38.21 3.71
3811 4091 0.321021 GATGATCAGCAGCTCCGGAT 59.679 55.000 3.57 0.00 0.00 4.18
3815 4095 0.319727 CTCCGATGATCAGCAGCTCC 60.320 60.000 12.15 0.00 0.00 4.70
3825 4105 3.196469 TGACTTGAAAGAGCTCCGATGAT 59.804 43.478 10.93 0.00 0.00 2.45
3843 4123 1.078848 GTGGCGCTGAATCCTGACT 60.079 57.895 7.64 0.00 0.00 3.41
3856 4138 1.078708 AGTAACATTCCGGGTGGCG 60.079 57.895 0.00 0.00 34.14 5.69
3886 4169 5.706833 GGTTGAATGAAAATGCCCTTTGAAT 59.293 36.000 0.00 0.00 0.00 2.57
3888 4171 4.347583 AGGTTGAATGAAAATGCCCTTTGA 59.652 37.500 0.00 0.00 0.00 2.69
3889 4172 4.644498 AGGTTGAATGAAAATGCCCTTTG 58.356 39.130 0.00 0.00 0.00 2.77
3908 4191 6.544928 AACAGAATGAAACCAAGAAAAGGT 57.455 33.333 0.00 0.00 39.69 3.50
3909 4192 7.438160 GGTAAACAGAATGAAACCAAGAAAAGG 59.562 37.037 0.00 0.00 39.69 3.11
3911 4194 7.978975 CAGGTAAACAGAATGAAACCAAGAAAA 59.021 33.333 0.00 0.00 39.69 2.29
3914 4197 6.039270 CACAGGTAAACAGAATGAAACCAAGA 59.961 38.462 0.00 0.00 39.69 3.02
4059 4346 3.062466 CGCCGTCAGACCTGGAGA 61.062 66.667 0.00 0.00 0.00 3.71
4060 4347 3.057547 CTCGCCGTCAGACCTGGAG 62.058 68.421 0.00 0.00 0.00 3.86
4472 5514 3.200825 CCCTAGACCCAATGACAATCTGT 59.799 47.826 0.00 0.00 0.00 3.41
4481 5523 0.030092 TCCTCCCCCTAGACCCAATG 60.030 60.000 0.00 0.00 0.00 2.82
4566 5887 1.267121 AATCCTGCACCTACGACAGT 58.733 50.000 0.00 0.00 0.00 3.55
4568 5889 3.792401 CAATAATCCTGCACCTACGACA 58.208 45.455 0.00 0.00 0.00 4.35
4569 5890 2.544267 GCAATAATCCTGCACCTACGAC 59.456 50.000 0.00 0.00 39.69 4.34
4579 5900 5.413833 AGAACTGTCAAGTGCAATAATCCTG 59.586 40.000 0.00 0.00 36.51 3.86
4602 5923 5.978322 GGCGAGTAACCACTTTATCTAAGAG 59.022 44.000 0.00 0.00 37.30 2.85
4671 5992 1.414919 GTATGCCCACGATCACCCTTA 59.585 52.381 0.00 0.00 0.00 2.69
4677 5998 2.236146 AGAAACTGTATGCCCACGATCA 59.764 45.455 0.00 0.00 0.00 2.92
4700 6021 2.224354 CCTTGCCAGCTTTCACCAAAAT 60.224 45.455 0.00 0.00 0.00 1.82
4714 6035 1.527380 GGAAACCACGTCCTTGCCA 60.527 57.895 0.00 0.00 31.94 4.92
4722 6043 0.178929 AGAGGAGGAGGAAACCACGT 60.179 55.000 0.00 0.00 0.00 4.49
4779 6100 6.097554 TCCACCTATGAAAAAGCACAGAAAAA 59.902 34.615 0.00 0.00 0.00 1.94
4783 6104 4.326826 CTCCACCTATGAAAAAGCACAGA 58.673 43.478 0.00 0.00 0.00 3.41
4784 6105 3.119708 GCTCCACCTATGAAAAAGCACAG 60.120 47.826 0.00 0.00 0.00 3.66
4786 6107 3.084786 AGCTCCACCTATGAAAAAGCAC 58.915 45.455 0.00 0.00 0.00 4.40
4787 6108 3.439857 AGCTCCACCTATGAAAAAGCA 57.560 42.857 0.00 0.00 0.00 3.91
4788 6109 4.518249 ACTAGCTCCACCTATGAAAAAGC 58.482 43.478 0.00 0.00 0.00 3.51
4789 6110 5.983540 AGACTAGCTCCACCTATGAAAAAG 58.016 41.667 0.00 0.00 0.00 2.27
4806 6132 1.429463 GCCACCACACGAAAGACTAG 58.571 55.000 0.00 0.00 0.00 2.57
4826 6152 0.806492 GTCGTTCTCATCCTTCCGGC 60.806 60.000 0.00 0.00 0.00 6.13
4924 6252 1.911057 AGACGGTGAGATGACAGTCA 58.089 50.000 5.50 5.50 41.78 3.41
4925 6253 3.011119 ACTAGACGGTGAGATGACAGTC 58.989 50.000 0.00 0.00 40.24 3.51
4926 6254 3.074675 ACTAGACGGTGAGATGACAGT 57.925 47.619 0.00 0.00 0.00 3.55
4927 6255 4.035792 CCTAACTAGACGGTGAGATGACAG 59.964 50.000 0.00 0.00 0.00 3.51
4928 6256 3.945921 CCTAACTAGACGGTGAGATGACA 59.054 47.826 0.00 0.00 0.00 3.58
4932 6260 2.308690 GCCCTAACTAGACGGTGAGAT 58.691 52.381 0.00 0.00 0.00 2.75
4996 6324 0.969894 AGCCTCTGACACCACTACAC 59.030 55.000 0.00 0.00 0.00 2.90
5083 6411 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
5096 6424 7.881775 AACAACTTTATTATTGCCTCTAGGG 57.118 36.000 0.00 0.00 35.18 3.53
5155 6483 9.938280 CCGGTTAATACAATTCTAGGATGAATA 57.062 33.333 0.00 0.00 35.82 1.75
5156 6484 8.656806 TCCGGTTAATACAATTCTAGGATGAAT 58.343 33.333 0.00 0.00 38.19 2.57
5157 6485 8.025270 TCCGGTTAATACAATTCTAGGATGAA 57.975 34.615 0.00 0.00 0.00 2.57
5158 6486 7.606135 TCCGGTTAATACAATTCTAGGATGA 57.394 36.000 0.00 0.00 0.00 2.92
5159 6487 8.557029 GTTTCCGGTTAATACAATTCTAGGATG 58.443 37.037 0.00 0.00 0.00 3.51
5160 6488 8.491958 AGTTTCCGGTTAATACAATTCTAGGAT 58.508 33.333 0.00 0.00 0.00 3.24
5161 6489 7.854337 AGTTTCCGGTTAATACAATTCTAGGA 58.146 34.615 0.00 0.00 0.00 2.94
5162 6490 8.502105 AAGTTTCCGGTTAATACAATTCTAGG 57.498 34.615 0.00 0.00 0.00 3.02
5167 6495 9.723601 TGTACTAAGTTTCCGGTTAATACAATT 57.276 29.630 0.00 0.00 0.00 2.32
5168 6496 9.895138 ATGTACTAAGTTTCCGGTTAATACAAT 57.105 29.630 0.00 0.00 28.05 2.71
5169 6497 9.153721 CATGTACTAAGTTTCCGGTTAATACAA 57.846 33.333 0.00 0.00 28.05 2.41
5170 6498 8.313292 ACATGTACTAAGTTTCCGGTTAATACA 58.687 33.333 0.00 3.81 28.60 2.29
5171 6499 8.598075 CACATGTACTAAGTTTCCGGTTAATAC 58.402 37.037 0.00 0.00 0.00 1.89
5172 6500 8.313292 ACACATGTACTAAGTTTCCGGTTAATA 58.687 33.333 0.00 0.00 0.00 0.98
5173 6501 7.118680 CACACATGTACTAAGTTTCCGGTTAAT 59.881 37.037 0.00 0.00 0.00 1.40
5174 6502 6.424509 CACACATGTACTAAGTTTCCGGTTAA 59.575 38.462 0.00 0.00 0.00 2.01
5175 6503 5.927689 CACACATGTACTAAGTTTCCGGTTA 59.072 40.000 0.00 0.00 0.00 2.85
5176 6504 4.753107 CACACATGTACTAAGTTTCCGGTT 59.247 41.667 0.00 0.00 0.00 4.44
5177 6505 4.039488 TCACACATGTACTAAGTTTCCGGT 59.961 41.667 0.00 0.00 0.00 5.28
5178 6506 4.562082 TCACACATGTACTAAGTTTCCGG 58.438 43.478 0.00 0.00 0.00 5.14
5179 6507 6.721571 ATTCACACATGTACTAAGTTTCCG 57.278 37.500 0.00 0.00 0.00 4.30
5180 6508 8.542497 TGTATTCACACATGTACTAAGTTTCC 57.458 34.615 0.00 0.00 0.00 3.13
5188 6516 9.719355 TTTTGTCTATGTATTCACACATGTACT 57.281 29.630 0.00 0.00 39.46 2.73
5189 6517 9.755064 GTTTTGTCTATGTATTCACACATGTAC 57.245 33.333 0.00 0.00 39.46 2.90
5190 6518 9.495572 TGTTTTGTCTATGTATTCACACATGTA 57.504 29.630 0.00 0.00 39.46 2.29
5191 6519 8.389779 TGTTTTGTCTATGTATTCACACATGT 57.610 30.769 0.00 0.00 39.46 3.21
5192 6520 8.720562 TCTGTTTTGTCTATGTATTCACACATG 58.279 33.333 0.00 0.00 39.46 3.21
5193 6521 8.846943 TCTGTTTTGTCTATGTATTCACACAT 57.153 30.769 0.00 0.00 41.88 3.21
5194 6522 7.931407 ACTCTGTTTTGTCTATGTATTCACACA 59.069 33.333 0.00 0.00 37.54 3.72
5195 6523 8.223769 CACTCTGTTTTGTCTATGTATTCACAC 58.776 37.037 0.00 0.00 37.54 3.82
5196 6524 7.931407 ACACTCTGTTTTGTCTATGTATTCACA 59.069 33.333 0.00 0.00 39.52 3.58
5197 6525 8.311650 ACACTCTGTTTTGTCTATGTATTCAC 57.688 34.615 0.00 0.00 0.00 3.18
5198 6526 7.602644 GGACACTCTGTTTTGTCTATGTATTCA 59.397 37.037 2.04 0.00 41.65 2.57
5199 6527 7.064728 GGGACACTCTGTTTTGTCTATGTATTC 59.935 40.741 2.04 0.00 41.65 1.75
5200 6528 6.879458 GGGACACTCTGTTTTGTCTATGTATT 59.121 38.462 2.04 0.00 41.65 1.89
5201 6529 6.213600 AGGGACACTCTGTTTTGTCTATGTAT 59.786 38.462 2.04 0.00 41.65 2.29
5202 6530 5.542635 AGGGACACTCTGTTTTGTCTATGTA 59.457 40.000 2.04 0.00 41.65 2.29
5203 6531 4.348168 AGGGACACTCTGTTTTGTCTATGT 59.652 41.667 2.04 0.00 41.65 2.29
5204 6532 4.899502 AGGGACACTCTGTTTTGTCTATG 58.100 43.478 2.04 0.00 41.65 2.23
5205 6533 5.780793 ACTAGGGACACTCTGTTTTGTCTAT 59.219 40.000 0.00 0.00 41.65 1.98
5206 6534 5.145564 ACTAGGGACACTCTGTTTTGTCTA 58.854 41.667 0.00 0.00 41.65 2.59
5207 6535 3.967987 ACTAGGGACACTCTGTTTTGTCT 59.032 43.478 0.00 0.00 41.65 3.41
5208 6536 4.338379 ACTAGGGACACTCTGTTTTGTC 57.662 45.455 0.00 0.00 41.28 3.18
5209 6537 5.794894 CATACTAGGGACACTCTGTTTTGT 58.205 41.667 0.00 0.00 0.00 2.83
5210 6538 4.631813 GCATACTAGGGACACTCTGTTTTG 59.368 45.833 0.00 0.00 0.00 2.44
5211 6539 4.323562 GGCATACTAGGGACACTCTGTTTT 60.324 45.833 0.00 0.00 0.00 2.43
5212 6540 3.197983 GGCATACTAGGGACACTCTGTTT 59.802 47.826 0.00 0.00 0.00 2.83
5213 6541 2.766828 GGCATACTAGGGACACTCTGTT 59.233 50.000 0.00 0.00 0.00 3.16
5214 6542 2.023888 AGGCATACTAGGGACACTCTGT 60.024 50.000 0.00 0.00 0.00 3.41
5215 6543 2.625790 GAGGCATACTAGGGACACTCTG 59.374 54.545 0.00 0.00 0.00 3.35
5216 6544 2.516277 AGAGGCATACTAGGGACACTCT 59.484 50.000 0.00 0.00 0.00 3.24
5217 6545 2.952116 AGAGGCATACTAGGGACACTC 58.048 52.381 0.00 0.00 0.00 3.51
5218 6546 3.464080 AGTAGAGGCATACTAGGGACACT 59.536 47.826 0.00 0.00 34.21 3.55
5219 6547 3.834938 AGTAGAGGCATACTAGGGACAC 58.165 50.000 0.00 0.00 34.21 3.67
5220 6548 4.079385 TCAAGTAGAGGCATACTAGGGACA 60.079 45.833 3.23 0.00 34.90 4.02
5221 6549 4.278919 GTCAAGTAGAGGCATACTAGGGAC 59.721 50.000 3.23 7.70 34.90 4.46
5222 6550 4.168283 AGTCAAGTAGAGGCATACTAGGGA 59.832 45.833 3.23 0.66 34.90 4.20
5223 6551 4.475345 AGTCAAGTAGAGGCATACTAGGG 58.525 47.826 3.23 0.00 34.90 3.53
5224 6552 5.182380 GCTAGTCAAGTAGAGGCATACTAGG 59.818 48.000 0.00 0.67 36.85 3.02
5225 6553 6.001460 AGCTAGTCAAGTAGAGGCATACTAG 58.999 44.000 0.00 0.00 38.50 2.57
5226 6554 5.942961 AGCTAGTCAAGTAGAGGCATACTA 58.057 41.667 3.23 0.00 34.90 1.82
5227 6555 4.798882 AGCTAGTCAAGTAGAGGCATACT 58.201 43.478 0.00 0.00 37.61 2.12
5228 6556 4.580995 TGAGCTAGTCAAGTAGAGGCATAC 59.419 45.833 0.00 0.00 29.64 2.39
5229 6557 4.793201 TGAGCTAGTCAAGTAGAGGCATA 58.207 43.478 0.00 0.00 29.64 3.14
5230 6558 3.636679 TGAGCTAGTCAAGTAGAGGCAT 58.363 45.455 0.00 0.00 29.64 4.40
5231 6559 3.087370 TGAGCTAGTCAAGTAGAGGCA 57.913 47.619 0.00 0.00 29.64 4.75
5232 6560 4.098654 TGAATGAGCTAGTCAAGTAGAGGC 59.901 45.833 0.00 0.00 39.19 4.70
5233 6561 5.843673 TGAATGAGCTAGTCAAGTAGAGG 57.156 43.478 0.00 0.00 39.19 3.69
5234 6562 7.036996 TGATGAATGAGCTAGTCAAGTAGAG 57.963 40.000 0.00 0.00 39.19 2.43
5235 6563 7.410120 TTGATGAATGAGCTAGTCAAGTAGA 57.590 36.000 0.00 0.00 39.19 2.59
5236 6564 7.978414 TCTTTGATGAATGAGCTAGTCAAGTAG 59.022 37.037 0.00 0.00 39.19 2.57
5237 6565 7.840931 TCTTTGATGAATGAGCTAGTCAAGTA 58.159 34.615 0.00 0.00 39.19 2.24
5238 6566 6.705302 TCTTTGATGAATGAGCTAGTCAAGT 58.295 36.000 0.00 0.00 39.19 3.16
5239 6567 7.254829 CCATCTTTGATGAATGAGCTAGTCAAG 60.255 40.741 8.91 0.00 39.19 3.02
5240 6568 6.541278 CCATCTTTGATGAATGAGCTAGTCAA 59.459 38.462 8.91 0.00 39.19 3.18
5241 6569 6.053650 CCATCTTTGATGAATGAGCTAGTCA 58.946 40.000 8.91 0.00 40.38 3.41
5242 6570 6.054295 ACCATCTTTGATGAATGAGCTAGTC 58.946 40.000 8.91 0.00 0.00 2.59
5243 6571 5.999044 ACCATCTTTGATGAATGAGCTAGT 58.001 37.500 8.91 0.00 0.00 2.57
5244 6572 6.939132 AACCATCTTTGATGAATGAGCTAG 57.061 37.500 8.91 0.00 0.00 3.42
5245 6573 8.049117 ACTTAACCATCTTTGATGAATGAGCTA 58.951 33.333 8.91 0.00 0.00 3.32
5246 6574 6.888632 ACTTAACCATCTTTGATGAATGAGCT 59.111 34.615 8.91 0.00 0.00 4.09
5247 6575 7.093322 ACTTAACCATCTTTGATGAATGAGC 57.907 36.000 8.91 0.00 0.00 4.26
5248 6576 9.565213 GAAACTTAACCATCTTTGATGAATGAG 57.435 33.333 8.91 6.13 0.00 2.90
5249 6577 8.522830 GGAAACTTAACCATCTTTGATGAATGA 58.477 33.333 8.91 0.00 0.00 2.57
5250 6578 8.526147 AGGAAACTTAACCATCTTTGATGAATG 58.474 33.333 8.91 0.00 37.44 2.67
5251 6579 8.526147 CAGGAAACTTAACCATCTTTGATGAAT 58.474 33.333 8.91 0.96 40.21 2.57
5252 6580 7.723616 TCAGGAAACTTAACCATCTTTGATGAA 59.276 33.333 8.91 0.00 40.21 2.57
5253 6581 7.174946 GTCAGGAAACTTAACCATCTTTGATGA 59.825 37.037 8.91 0.00 40.21 2.92
5254 6582 7.308435 GTCAGGAAACTTAACCATCTTTGATG 58.692 38.462 0.92 0.92 40.21 3.07
5255 6583 6.434340 GGTCAGGAAACTTAACCATCTTTGAT 59.566 38.462 0.00 0.00 40.21 2.57
5256 6584 5.768164 GGTCAGGAAACTTAACCATCTTTGA 59.232 40.000 0.00 0.00 40.21 2.69
5257 6585 5.534654 TGGTCAGGAAACTTAACCATCTTTG 59.465 40.000 0.00 0.00 40.21 2.77
5258 6586 5.701224 TGGTCAGGAAACTTAACCATCTTT 58.299 37.500 0.00 0.00 40.21 2.52
5259 6587 5.319043 TGGTCAGGAAACTTAACCATCTT 57.681 39.130 0.00 0.00 40.21 2.40
5260 6588 4.993705 TGGTCAGGAAACTTAACCATCT 57.006 40.909 0.00 0.00 40.21 2.90
5261 6589 4.399303 CCATGGTCAGGAAACTTAACCATC 59.601 45.833 2.57 0.00 40.21 3.51
5262 6590 4.044065 TCCATGGTCAGGAAACTTAACCAT 59.956 41.667 12.58 0.00 40.21 3.55
5263 6591 3.396276 TCCATGGTCAGGAAACTTAACCA 59.604 43.478 12.58 0.00 40.21 3.67
5264 6592 3.756963 GTCCATGGTCAGGAAACTTAACC 59.243 47.826 12.58 0.00 40.21 2.85
5265 6593 4.394729 TGTCCATGGTCAGGAAACTTAAC 58.605 43.478 12.58 0.00 40.21 2.01
5266 6594 4.715534 TGTCCATGGTCAGGAAACTTAA 57.284 40.909 12.58 0.00 40.21 1.85
5267 6595 4.042809 ACATGTCCATGGTCAGGAAACTTA 59.957 41.667 26.52 0.00 42.91 2.24
5268 6596 3.181429 ACATGTCCATGGTCAGGAAACTT 60.181 43.478 26.52 4.49 42.91 2.66
5269 6597 2.376518 ACATGTCCATGGTCAGGAAACT 59.623 45.455 26.52 4.84 42.91 2.66
5270 6598 2.489329 CACATGTCCATGGTCAGGAAAC 59.511 50.000 26.52 10.22 42.91 2.78
5271 6599 2.108075 ACACATGTCCATGGTCAGGAAA 59.892 45.455 26.52 0.00 42.91 3.13
5272 6600 1.704628 ACACATGTCCATGGTCAGGAA 59.295 47.619 26.52 0.04 42.91 3.36
5273 6601 1.361204 ACACATGTCCATGGTCAGGA 58.639 50.000 26.52 0.00 42.91 3.86
5274 6602 1.814394 CAACACATGTCCATGGTCAGG 59.186 52.381 19.80 19.80 42.91 3.86
5275 6603 2.507484 ACAACACATGTCCATGGTCAG 58.493 47.619 16.79 11.17 42.91 3.51
5276 6604 2.655090 ACAACACATGTCCATGGTCA 57.345 45.000 14.21 14.21 42.91 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.