Multiple sequence alignment - TraesCS7D01G249900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G249900 chr7D 100.000 4338 0 0 1 4338 221296128 221300465 0.000000e+00 8011
1 TraesCS7D01G249900 chr7D 93.092 3648 210 19 4 3634 221697865 221694243 0.000000e+00 5302
2 TraesCS7D01G249900 chr7D 93.327 2203 105 9 444 2605 221685527 221687728 0.000000e+00 3216
3 TraesCS7D01G249900 chr7D 93.902 1722 97 7 889 2605 221581570 221583288 0.000000e+00 2591
4 TraesCS7D01G249900 chr7D 95.479 1327 56 3 3013 4338 221583810 221585133 0.000000e+00 2115
5 TraesCS7D01G249900 chr7D 95.026 1327 62 3 3013 4338 221688249 221689572 0.000000e+00 2082
6 TraesCS7D01G249900 chr7D 95.532 470 12 3 444 904 221581084 221581553 0.000000e+00 743
7 TraesCS7D01G249900 chr7D 95.045 444 20 2 1 443 221684936 221685378 0.000000e+00 697
8 TraesCS7D01G249900 chr7D 94.369 444 23 2 1 443 221580493 221580935 0.000000e+00 680
9 TraesCS7D01G249900 chr7D 92.162 370 20 3 2646 3014 221583288 221583649 8.320000e-142 514
10 TraesCS7D01G249900 chr7D 92.141 369 21 1 2646 3014 221687728 221688088 8.320000e-142 514
11 TraesCS7D01G249900 chr7D 93.038 316 21 1 3686 4001 221694243 221693929 1.100000e-125 460
12 TraesCS7D01G249900 chr7A 95.710 3916 129 14 444 4338 236079896 236083793 0.000000e+00 6264
13 TraesCS7D01G249900 chr7A 95.881 3059 94 11 444 3483 236323701 236326746 0.000000e+00 4922
14 TraesCS7D01G249900 chr7A 92.374 3121 183 30 660 3759 236349364 236352450 0.000000e+00 4394
15 TraesCS7D01G249900 chr7A 90.301 1629 109 25 2720 4338 236376868 236378457 0.000000e+00 2087
16 TraesCS7D01G249900 chr7A 89.822 1631 109 25 2720 4338 236430864 236432449 0.000000e+00 2039
17 TraesCS7D01G249900 chr7A 91.557 758 35 9 3583 4338 236461490 236462220 0.000000e+00 1018
18 TraesCS7D01G249900 chr7A 94.473 579 26 2 1 574 236348603 236349180 0.000000e+00 887
19 TraesCS7D01G249900 chr7A 93.996 533 26 2 3473 4003 236328187 236328715 0.000000e+00 802
20 TraesCS7D01G249900 chr7A 94.607 445 20 4 1 443 236079303 236079745 0.000000e+00 686
21 TraesCS7D01G249900 chr7A 94.607 445 20 4 1 443 236323108 236323550 0.000000e+00 686
22 TraesCS7D01G249900 chr7A 95.203 271 10 2 4070 4338 236328715 236328984 4.010000e-115 425
23 TraesCS7D01G249900 chr7B 96.341 2542 70 8 444 2974 175722234 175719705 0.000000e+00 4157
24 TraesCS7D01G249900 chr7B 91.981 2494 137 25 331 2812 175192630 175195072 0.000000e+00 3439
25 TraesCS7D01G249900 chr7B 96.128 2118 61 9 865 2974 175614433 175612329 0.000000e+00 3437
26 TraesCS7D01G249900 chr7B 92.708 1344 78 11 2999 4332 175612335 175611002 0.000000e+00 1921
27 TraesCS7D01G249900 chr7B 94.621 1041 53 3 3299 4338 175719377 175718339 0.000000e+00 1609
28 TraesCS7D01G249900 chr7B 92.517 441 24 3 4 443 175722812 175722380 1.320000e-174 623
29 TraesCS7D01G249900 chr7B 92.290 441 25 3 4 443 175616847 175616415 6.160000e-173 617
30 TraesCS7D01G249900 chr7B 88.528 462 32 6 3686 4147 175197389 175197829 1.370000e-149 540
31 TraesCS7D01G249900 chr7B 94.065 337 18 2 1 336 175185025 175185360 1.080000e-140 510
32 TraesCS7D01G249900 chr7B 96.644 298 6 2 573 866 175616051 175615754 3.900000e-135 492
33 TraesCS7D01G249900 chr7B 94.241 191 10 1 2823 3013 175196472 175196661 1.530000e-74 291
34 TraesCS7D01G249900 chr7B 92.647 136 5 1 444 574 175616269 175616134 1.590000e-44 191


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G249900 chr7D 221296128 221300465 4337 False 8011.000000 8011 100.000000 1 4338 1 chr7D.!!$F1 4337
1 TraesCS7D01G249900 chr7D 221693929 221697865 3936 True 2881.000000 5302 93.065000 4 4001 2 chr7D.!!$R1 3997
2 TraesCS7D01G249900 chr7D 221684936 221689572 4636 False 1627.250000 3216 93.884750 1 4338 4 chr7D.!!$F3 4337
3 TraesCS7D01G249900 chr7D 221580493 221585133 4640 False 1328.600000 2591 94.288800 1 4338 5 chr7D.!!$F2 4337
4 TraesCS7D01G249900 chr7A 236079303 236083793 4490 False 3475.000000 6264 95.158500 1 4338 2 chr7A.!!$F4 4337
5 TraesCS7D01G249900 chr7A 236348603 236352450 3847 False 2640.500000 4394 93.423500 1 3759 2 chr7A.!!$F6 3758
6 TraesCS7D01G249900 chr7A 236376868 236378457 1589 False 2087.000000 2087 90.301000 2720 4338 1 chr7A.!!$F1 1618
7 TraesCS7D01G249900 chr7A 236430864 236432449 1585 False 2039.000000 2039 89.822000 2720 4338 1 chr7A.!!$F2 1618
8 TraesCS7D01G249900 chr7A 236323108 236328984 5876 False 1708.750000 4922 94.921750 1 4338 4 chr7A.!!$F5 4337
9 TraesCS7D01G249900 chr7A 236461490 236462220 730 False 1018.000000 1018 91.557000 3583 4338 1 chr7A.!!$F3 755
10 TraesCS7D01G249900 chr7B 175718339 175722812 4473 True 2129.666667 4157 94.493000 4 4338 3 chr7B.!!$R2 4334
11 TraesCS7D01G249900 chr7B 175192630 175197829 5199 False 1423.333333 3439 91.583333 331 4147 3 chr7B.!!$F2 3816
12 TraesCS7D01G249900 chr7B 175611002 175616847 5845 True 1331.600000 3437 94.083400 4 4332 5 chr7B.!!$R1 4328

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 25 1.064946 GACGATGAGGCGGAGAGTG 59.935 63.158 0.00 0.0 35.12 3.51 F
236 238 1.508088 CAAGAAGCCGCCATTGGAC 59.492 57.895 6.95 0.0 0.00 4.02 F
1441 3074 1.692762 GCATCCCTCAGACCCCTCTTA 60.693 57.143 0.00 0.0 0.00 2.10 F
2054 3692 0.669619 TGAAGCACACAACCAGCATG 59.330 50.000 0.00 0.0 0.00 4.06 F
2321 3960 0.827925 TTGCCCTCGTCAGTCAGAGT 60.828 55.000 0.00 0.0 32.88 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1580 3214 3.215975 CCCAGGGACGTTAGAAAACAAA 58.784 45.455 0.00 0.0 35.16 2.83 R
2054 3692 2.092323 CCCCAACAAAGCTAAGCCTAC 58.908 52.381 0.00 0.0 0.00 3.18 R
2606 4255 0.028902 GTGGCACGTGTGGAACTTTC 59.971 55.000 18.38 0.0 38.04 2.62 R
3038 6415 0.874607 AGACGTCGTCCTTGTGCAAC 60.875 55.000 21.40 0.0 32.18 4.17 R
3662 8589 2.505407 TCTGTCCCAGTACCCATTGATG 59.495 50.000 0.00 0.0 32.61 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.064946 GACGATGAGGCGGAGAGTG 59.935 63.158 0.00 0.00 35.12 3.51
95 97 2.835431 CCGCGATCCTCTCAGGGT 60.835 66.667 8.23 0.00 35.59 4.34
136 138 3.710722 CCTCCTGTGAAGCCCGCT 61.711 66.667 0.00 0.00 0.00 5.52
175 177 1.804326 CTCCGTGCGTCTAAACCGG 60.804 63.158 0.00 0.00 39.98 5.28
236 238 1.508088 CAAGAAGCCGCCATTGGAC 59.492 57.895 6.95 0.00 0.00 4.02
317 320 8.806429 TGCATGATTAGATAGTTCCTTCAAAA 57.194 30.769 0.00 0.00 0.00 2.44
399 402 6.847289 GCGTTCGTTTTTAGAGATTTTACACA 59.153 34.615 0.00 0.00 0.00 3.72
401 404 9.377383 CGTTCGTTTTTAGAGATTTTACACATT 57.623 29.630 0.00 0.00 0.00 2.71
412 415 9.950496 AGAGATTTTACACATTGTAGATTCAGT 57.050 29.630 0.00 0.00 33.92 3.41
508 667 6.476378 ACACTAGGTCATGTTTCTAATGCTT 58.524 36.000 0.00 0.00 0.00 3.91
955 2588 5.018809 TCTATCAAGCATTTTGCCTTTCCT 58.981 37.500 0.00 0.00 46.52 3.36
1083 2716 5.620738 AGAGCCAAGATATGTTAGCTGAA 57.379 39.130 10.18 0.00 0.00 3.02
1117 2750 3.055167 CCAATGGGATGACAGTGACACTA 60.055 47.826 8.02 0.00 38.62 2.74
1441 3074 1.692762 GCATCCCTCAGACCCCTCTTA 60.693 57.143 0.00 0.00 0.00 2.10
1521 3155 7.647715 GTGTGAGTATTACTTGTTTTGCACAAT 59.352 33.333 11.58 0.00 44.72 2.71
1707 3342 2.417719 CTGTGGTCTGCTAAACACCTC 58.582 52.381 4.90 0.00 33.07 3.85
1808 3443 5.579753 TTCAGGTACTATATCTCTCCCGT 57.420 43.478 0.00 0.00 36.02 5.28
1836 3471 6.183360 GCAGAAAGGTAAGATCCATGAAAGAC 60.183 42.308 0.00 0.00 0.00 3.01
1916 3553 3.430042 AGCATATTAGTGCCCAGATGG 57.570 47.619 0.00 0.00 46.19 3.51
2054 3692 0.669619 TGAAGCACACAACCAGCATG 59.330 50.000 0.00 0.00 0.00 4.06
2252 3891 4.093743 TGAAGACAACCCAGACTATGCTA 58.906 43.478 0.00 0.00 0.00 3.49
2270 3909 3.449737 TGCTACCCGCTTACAGTTATCTT 59.550 43.478 0.00 0.00 40.11 2.40
2321 3960 0.827925 TTGCCCTCGTCAGTCAGAGT 60.828 55.000 0.00 0.00 32.88 3.24
2390 4030 6.090783 GGTTACTTTAACTGGCATGCTAAAC 58.909 40.000 18.92 9.82 38.68 2.01
2457 4099 5.106987 GGCCACTATTGCTTCAAATTTTGTG 60.107 40.000 8.89 5.12 0.00 3.33
2493 4135 3.410631 TTCGGATTGCCTTGTCAACTA 57.589 42.857 0.00 0.00 0.00 2.24
2514 4156 9.891828 CAACTAAGAATGCATTACAAGTTTGTA 57.108 29.630 21.27 0.73 42.35 2.41
2601 4250 3.520696 ACAGGATAGTAGGGCATGCATA 58.479 45.455 21.36 8.96 0.00 3.14
2606 4255 5.367937 AGGATAGTAGGGCATGCATATAAGG 59.632 44.000 21.36 0.00 0.00 2.69
2714 4369 6.549433 ATTTCTGTAAATTGGATGGCACAT 57.451 33.333 0.00 0.00 35.77 3.21
2733 4388 6.256975 GGCACATCTGATAACATAACGTACAA 59.743 38.462 0.00 0.00 0.00 2.41
2815 5867 6.856135 TGAGAGTTCTATTAATGCATGCTG 57.144 37.500 20.33 0.72 0.00 4.41
2816 5868 5.237996 TGAGAGTTCTATTAATGCATGCTGC 59.762 40.000 20.33 0.00 45.29 5.25
2817 5869 4.518211 AGAGTTCTATTAATGCATGCTGCC 59.482 41.667 20.33 0.00 44.23 4.85
2818 5870 4.467769 AGTTCTATTAATGCATGCTGCCT 58.532 39.130 20.33 2.99 44.23 4.75
2819 5871 5.624159 AGTTCTATTAATGCATGCTGCCTA 58.376 37.500 20.33 0.00 44.23 3.93
2820 5872 6.064060 AGTTCTATTAATGCATGCTGCCTAA 58.936 36.000 20.33 10.88 44.23 2.69
2821 5873 6.206243 AGTTCTATTAATGCATGCTGCCTAAG 59.794 38.462 20.33 9.91 44.23 2.18
2822 5874 5.624159 TCTATTAATGCATGCTGCCTAAGT 58.376 37.500 20.33 0.00 44.23 2.24
2899 5952 4.835284 TGTTGATTATAGCACCACTCCA 57.165 40.909 0.00 0.00 0.00 3.86
2926 5979 3.685139 AGTTCTTGCAACTAGCTAGCA 57.315 42.857 20.91 11.31 44.32 3.49
3038 6415 7.940178 TTAGTATACTTGCATACAATGACCG 57.060 36.000 11.40 0.00 34.61 4.79
3069 6447 4.082408 AGGACGACGTCTTGATGTGATTAA 60.082 41.667 25.87 0.00 32.47 1.40
3073 6451 5.694910 ACGACGTCTTGATGTGATTAACTTT 59.305 36.000 14.70 0.00 0.00 2.66
3158 6541 6.704289 ACCATCTGATAATTTGACACATGG 57.296 37.500 0.00 0.00 36.59 3.66
3351 6767 2.289945 ACCAGTGATGCTCTCCAGAAAC 60.290 50.000 0.00 0.00 0.00 2.78
3380 6802 5.980698 AAATGCTCTATCAGTGATGTTCG 57.019 39.130 16.15 2.96 0.00 3.95
3416 6838 7.815398 TGAAATGTGCTATTTTGCTGTATTG 57.185 32.000 1.93 0.00 0.00 1.90
3485 8358 0.401738 ACTTTGCTCCAGCTTGGCTA 59.598 50.000 0.00 0.00 42.66 3.93
3517 8392 4.766891 AGTTTTTGGGACATCGACATCAAT 59.233 37.500 0.00 0.00 39.30 2.57
3532 8407 6.878923 TCGACATCAATAGAGGAATGTTGTTT 59.121 34.615 0.00 0.00 29.67 2.83
3536 8411 8.462016 ACATCAATAGAGGAATGTTGTTTTAGC 58.538 33.333 0.00 0.00 0.00 3.09
3674 8601 7.531716 TCGTTTTTATTGACATCAATGGGTAC 58.468 34.615 15.83 8.70 45.34 3.34
3721 8648 1.140312 TCTGCCACCCCCATTCTATC 58.860 55.000 0.00 0.00 0.00 2.08
3734 8661 5.398353 CCCCATTCTATCACCAAAGATCACT 60.398 44.000 0.00 0.00 0.00 3.41
4005 8934 4.942761 ACTGGCATGACAAAATTTCAGT 57.057 36.364 1.11 0.00 0.00 3.41
4031 8960 3.620488 CTGCCACCTTTATTAGCCTGAA 58.380 45.455 0.00 0.00 0.00 3.02
4107 9036 5.564550 AGTCTTACAAGATGCAGGAACAAT 58.435 37.500 0.00 0.00 37.39 2.71
4108 9037 5.413833 AGTCTTACAAGATGCAGGAACAATG 59.586 40.000 0.00 0.00 37.39 2.82
4188 9151 8.297426 AGTTCTCGAAAACTTATTGAAAATCCC 58.703 33.333 0.00 0.00 36.02 3.85
4262 9227 6.945636 TTCTAGGGGTTTAGTGATTCTCAA 57.054 37.500 0.00 0.00 0.00 3.02
4327 9293 6.507023 GGTCTCAAAATTTGCTTTCTCTTCA 58.493 36.000 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
326 329 7.044798 GCCCTAGCATGGTAATCTATCTAAAG 58.955 42.308 6.04 0.00 39.53 1.85
508 667 0.821517 ACACCGACCGAGATGCAATA 59.178 50.000 0.00 0.00 0.00 1.90
523 682 1.757699 CAGAACCCTAGGCTAGACACC 59.242 57.143 22.99 9.08 0.00 4.16
592 866 6.506147 CATCAACAATCCAGTTCACAAAAGA 58.494 36.000 0.00 0.00 0.00 2.52
673 951 5.070981 TGTTTTGAGATCCCTAGGCTAGATG 59.929 44.000 22.99 13.09 0.00 2.90
955 2588 7.040686 GGAGGTAATTGCAAAAGTTTCAGACTA 60.041 37.037 1.71 0.00 37.72 2.59
1117 2750 3.297134 TGCACTTCCAGAGGAGTTTTT 57.703 42.857 0.00 0.00 31.21 1.94
1441 3074 7.072581 CCTTAGAGTAATATTCCTTTCCCACCT 59.927 40.741 0.00 0.00 0.00 4.00
1521 3155 7.107542 AGCTGGGAAACAAATTAACTACGATA 58.892 34.615 0.00 0.00 0.00 2.92
1571 3205 6.200097 GGACGTTAGAAAACAAATGCAACATT 59.800 34.615 0.00 0.00 35.16 2.71
1580 3214 3.215975 CCCAGGGACGTTAGAAAACAAA 58.784 45.455 0.00 0.00 35.16 2.83
1707 3342 6.767902 AGCACATCCTTTTATATAGGTGTGTG 59.232 38.462 21.62 21.62 44.17 3.82
1808 3443 4.968719 TCATGGATCTTACCTTTCTGCCTA 59.031 41.667 0.00 0.00 0.00 3.93
1818 3453 3.797256 CGACGTCTTTCATGGATCTTACC 59.203 47.826 14.70 0.00 0.00 2.85
1836 3471 4.922103 AGAAAGTTAGCTTACCTTTCGACG 59.078 41.667 18.71 0.00 45.44 5.12
1916 3553 5.189180 ACATGCTAGATGAAGGGAAAACTC 58.811 41.667 0.00 0.00 0.00 3.01
2054 3692 2.092323 CCCCAACAAAGCTAAGCCTAC 58.908 52.381 0.00 0.00 0.00 3.18
2166 3805 6.363065 ACATCTAGGCAGATTGAATCACATT 58.637 36.000 8.03 0.00 39.62 2.71
2252 3891 5.672421 AACTAAGATAACTGTAAGCGGGT 57.328 39.130 0.00 0.00 37.60 5.28
2270 3909 6.223120 GTTTAGGTACCCTGAACGAAAACTA 58.777 40.000 8.74 0.00 39.62 2.24
2390 4030 0.523072 CTTGTCCAACCAGCAATCCG 59.477 55.000 0.00 0.00 0.00 4.18
2457 4099 6.253512 GCAATCCGAAAACCATTTTATCACTC 59.746 38.462 0.00 0.00 31.94 3.51
2560 4209 1.918293 CACCCCAGCTCACCACCTA 60.918 63.158 0.00 0.00 0.00 3.08
2606 4255 0.028902 GTGGCACGTGTGGAACTTTC 59.971 55.000 18.38 0.00 38.04 2.62
2647 4296 6.288941 TCCAATTTACGACATCTCAACCTA 57.711 37.500 0.00 0.00 0.00 3.08
2735 4390 1.961277 AGCCACTAGTGCGTGCAAC 60.961 57.895 17.86 0.52 33.60 4.17
2815 5867 6.640518 TGCAACTATATATAGGCACTTAGGC 58.359 40.000 21.20 12.99 41.75 3.93
2820 5872 9.605275 CATGTTATGCAACTATATATAGGCACT 57.395 33.333 21.20 13.83 37.82 4.40
2821 5873 9.599866 TCATGTTATGCAACTATATATAGGCAC 57.400 33.333 21.20 11.42 32.84 5.01
2822 5874 9.822185 CTCATGTTATGCAACTATATATAGGCA 57.178 33.333 21.20 20.33 35.56 4.75
2899 5952 7.065204 GCTAGCTAGTTGCAAGAACTTAATCTT 59.935 37.037 21.62 0.00 45.94 2.40
2926 5979 4.130118 CGCTGCTACAAGATCCCTAAATT 58.870 43.478 0.00 0.00 0.00 1.82
3038 6415 0.874607 AGACGTCGTCCTTGTGCAAC 60.875 55.000 21.40 0.00 32.18 4.17
3069 6447 4.102367 AGCCAGAAGAGAAGACAAGAAAGT 59.898 41.667 0.00 0.00 0.00 2.66
3073 6451 3.234353 TGAGCCAGAAGAGAAGACAAGA 58.766 45.455 0.00 0.00 0.00 3.02
3158 6541 7.205297 AGCATGCCATCAGATAAATAACAAAC 58.795 34.615 15.66 0.00 0.00 2.93
3288 6671 6.299805 AGAGCATCATTGGTACTTGTAGAA 57.700 37.500 0.00 0.00 37.82 2.10
3302 6685 6.492772 AGTTTTCTCTTTTTGGAGAGCATCAT 59.507 34.615 0.00 0.00 42.37 2.45
3351 6767 8.242053 ACATCACTGATAGAGCATTTTTCTTTG 58.758 33.333 0.00 0.00 0.00 2.77
3380 6802 5.429957 AGCACATTTCAAGTCTGAAGTTC 57.570 39.130 0.00 0.00 42.48 3.01
3416 6838 9.085250 GCTAAGGTAGAACATTAACAGTAAGAC 57.915 37.037 0.00 0.00 0.00 3.01
3485 8358 4.503714 TGTCCCAAAAACTCTCAGTTCT 57.496 40.909 0.00 0.00 37.47 3.01
3517 8392 7.817418 AACTTGCTAAAACAACATTCCTCTA 57.183 32.000 0.00 0.00 0.00 2.43
3532 8407 5.300539 TGTGGCAGTTTCAATAACTTGCTAA 59.699 36.000 0.00 0.00 32.11 3.09
3536 8411 5.107375 GCAATGTGGCAGTTTCAATAACTTG 60.107 40.000 0.00 0.00 0.00 3.16
3662 8589 2.505407 TCTGTCCCAGTACCCATTGATG 59.495 50.000 0.00 0.00 32.61 3.07
3674 8601 4.646945 TCTGTTATCTAAGCTCTGTCCCAG 59.353 45.833 0.00 0.00 0.00 4.45
3833 8760 9.918630 AATATGATGCATAGTTTAATGGCTTTC 57.081 29.630 0.00 0.00 29.42 2.62
3860 8789 9.248291 GTTTGTTTTTCTTTTGAGATGCAGATA 57.752 29.630 0.00 0.00 0.00 1.98
4005 8934 2.733956 CTAATAAAGGTGGCAGCCCAA 58.266 47.619 13.95 0.00 44.33 4.12
4031 8960 5.963176 TGCTGTGTGACATTTTATCATGT 57.037 34.783 0.00 0.00 40.25 3.21
4108 9037 9.521503 GCCTATTTGACCTCATAAAGAATTTTC 57.478 33.333 0.00 0.00 40.09 2.29
4188 9151 8.484641 AGTATATAATGAGCAAATGATCCGTG 57.515 34.615 0.00 0.00 0.00 4.94
4262 9227 6.589907 GCGATCATTATCTGGGTTTTGTTTTT 59.410 34.615 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.