Multiple sequence alignment - TraesCS7D01G249700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G249700 chr7D 100.000 3045 0 0 1 3045 220978686 220981730 0.000000e+00 5624.0
1 TraesCS7D01G249700 chr7D 87.685 203 19 6 2135 2333 192936017 192936217 6.570000e-57 231.0
2 TraesCS7D01G249700 chr7A 93.856 2067 77 19 1 2045 235468399 235470437 0.000000e+00 3068.0
3 TraesCS7D01G249700 chr7A 81.975 405 52 8 2482 2865 715930415 715930819 1.050000e-84 324.0
4 TraesCS7D01G249700 chr7A 91.837 49 4 0 2882 2930 290326632 290326584 5.450000e-08 69.4
5 TraesCS7D01G249700 chr7B 96.333 1227 39 1 835 2061 175997203 175995983 0.000000e+00 2012.0
6 TraesCS7D01G249700 chr7B 93.787 853 30 6 1 852 175999549 175998719 0.000000e+00 1260.0
7 TraesCS7D01G249700 chr7B 88.767 454 41 6 2419 2865 175995897 175995447 5.740000e-152 547.0
8 TraesCS7D01G249700 chr7B 87.368 190 18 4 2300 2484 667420450 667420638 2.380000e-51 213.0
9 TraesCS7D01G249700 chr4A 84.444 405 44 14 2092 2484 534233976 534233579 6.160000e-102 381.0
10 TraesCS7D01G249700 chr4A 91.477 176 14 1 2137 2311 362068076 362067901 1.090000e-59 241.0
11 TraesCS7D01G249700 chr6D 83.659 410 44 15 2482 2869 97770842 97771250 6.200000e-97 364.0
12 TraesCS7D01G249700 chr6D 90.217 184 12 4 2300 2478 426298084 426298266 5.080000e-58 235.0
13 TraesCS7D01G249700 chr6D 88.298 188 19 1 2300 2484 69847814 69847627 3.950000e-54 222.0
14 TraesCS7D01G249700 chr6D 87.831 189 18 3 2300 2484 69917893 69917706 1.840000e-52 217.0
15 TraesCS7D01G249700 chr6D 88.235 119 12 1 2928 3044 97771258 97771376 1.140000e-29 141.0
16 TraesCS7D01G249700 chr3D 83.374 409 47 9 2482 2869 581084250 581083842 2.890000e-95 359.0
17 TraesCS7D01G249700 chr3D 92.941 170 11 1 2134 2302 79558537 79558706 2.340000e-61 246.0
18 TraesCS7D01G249700 chr3D 92.941 170 11 1 2135 2303 217587727 217587558 2.340000e-61 246.0
19 TraesCS7D01G249700 chr3D 89.091 110 10 1 2937 3044 581083825 581083716 5.300000e-28 135.0
20 TraesCS7D01G249700 chr3B 85.976 328 39 5 2482 2803 694178713 694178387 8.080000e-91 344.0
21 TraesCS7D01G249700 chr3B 91.892 111 7 1 2936 3044 694178289 694178179 1.460000e-33 154.0
22 TraesCS7D01G249700 chr2A 85.890 326 41 4 2482 2803 748995133 748995457 2.910000e-90 342.0
23 TraesCS7D01G249700 chr2A 82.195 410 49 12 2482 2869 749525299 749525706 6.290000e-87 331.0
24 TraesCS7D01G249700 chr2A 79.452 292 46 12 2481 2767 133478269 133477987 8.610000e-46 195.0
25 TraesCS7D01G249700 chr2A 89.381 113 12 0 1554 1666 750963460 750963572 3.160000e-30 143.0
26 TraesCS7D01G249700 chr2A 88.235 119 12 1 2928 3044 749525714 749525832 1.140000e-29 141.0
27 TraesCS7D01G249700 chr2A 93.617 47 3 0 2882 2928 434305465 434305419 1.510000e-08 71.3
28 TraesCS7D01G249700 chr5A 85.000 320 39 7 2482 2794 654558757 654559074 1.760000e-82 316.0
29 TraesCS7D01G249700 chr5A 76.852 324 54 15 2482 2795 378724475 378724787 2.430000e-36 163.0
30 TraesCS7D01G249700 chr5A 90.000 110 9 1 2937 3044 654559181 654559290 1.140000e-29 141.0
31 TraesCS7D01G249700 chr2B 84.146 328 46 5 2481 2803 396418084 396417758 2.280000e-81 313.0
32 TraesCS7D01G249700 chr2B 92.486 173 12 1 2136 2307 719520503 719520675 2.340000e-61 246.0
33 TraesCS7D01G249700 chr1D 92.486 173 11 2 2131 2302 36612303 36612132 2.340000e-61 246.0
34 TraesCS7D01G249700 chr1D 87.166 187 21 1 2301 2484 62189966 62190152 3.080000e-50 209.0
35 TraesCS7D01G249700 chr1B 89.840 187 17 2 2120 2305 519817790 519817975 3.920000e-59 239.0
36 TraesCS7D01G249700 chr3A 87.879 198 18 5 2107 2301 50219492 50219686 8.490000e-56 228.0
37 TraesCS7D01G249700 chr3A 75.773 388 67 14 2505 2869 639187506 639187889 1.450000e-38 171.0
38 TraesCS7D01G249700 chr3A 89.815 108 9 1 2939 3044 581628120 581628013 1.470000e-28 137.0
39 TraesCS7D01G249700 chr3A 93.617 47 3 0 2882 2928 124544765 124544719 1.510000e-08 71.3
40 TraesCS7D01G249700 chr3A 93.617 47 3 0 2882 2928 395488603 395488557 1.510000e-08 71.3
41 TraesCS7D01G249700 chr2D 88.542 192 15 3 2300 2485 49189516 49189706 3.050000e-55 226.0
42 TraesCS7D01G249700 chr2D 93.750 48 3 0 2882 2929 412303797 412303844 4.210000e-09 73.1
43 TraesCS7D01G249700 chr6A 87.435 191 17 5 2300 2484 87646869 87646680 2.380000e-51 213.0
44 TraesCS7D01G249700 chr6A 89.474 57 5 1 2871 2926 117589316 117589260 1.510000e-08 71.3
45 TraesCS7D01G249700 chr6B 85.789 190 19 6 2302 2484 124471647 124471459 8.610000e-46 195.0
46 TraesCS7D01G249700 chr6B 89.091 110 10 1 2937 3044 51135334 51135225 5.300000e-28 135.0
47 TraesCS7D01G249700 chr6B 90.566 53 4 1 2877 2928 391601071 391601123 5.450000e-08 69.4
48 TraesCS7D01G249700 chr4D 78.523 298 50 12 2479 2769 380558431 380558721 1.860000e-42 183.0
49 TraesCS7D01G249700 chr4B 78.767 292 47 13 2482 2767 104566600 104566318 6.710000e-42 182.0
50 TraesCS7D01G249700 chr4B 77.743 319 54 15 2482 2793 416116019 416116327 2.410000e-41 180.0
51 TraesCS7D01G249700 chrUn 75.495 404 65 21 2489 2869 50926319 50925927 1.880000e-37 167.0
52 TraesCS7D01G249700 chrUn 75.495 404 65 21 2489 2869 226877781 226878173 1.880000e-37 167.0
53 TraesCS7D01G249700 chr5B 89.916 119 10 1 2928 3044 579072334 579072452 5.260000e-33 152.0
54 TraesCS7D01G249700 chr5B 87.395 119 13 1 2928 3044 579062300 579062418 5.300000e-28 135.0
55 TraesCS7D01G249700 chr5B 93.617 47 3 0 2882 2928 359433425 359433471 1.510000e-08 71.3
56 TraesCS7D01G249700 chr1A 95.745 47 2 0 2882 2928 150316242 150316288 3.260000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G249700 chr7D 220978686 220981730 3044 False 5624.0 5624 100.000000 1 3045 1 chr7D.!!$F2 3044
1 TraesCS7D01G249700 chr7A 235468399 235470437 2038 False 3068.0 3068 93.856000 1 2045 1 chr7A.!!$F1 2044
2 TraesCS7D01G249700 chr7B 175995447 175999549 4102 True 1273.0 2012 92.962333 1 2865 3 chr7B.!!$R1 2864
3 TraesCS7D01G249700 chr6D 97770842 97771376 534 False 252.5 364 85.947000 2482 3044 2 chr6D.!!$F2 562
4 TraesCS7D01G249700 chr3D 581083716 581084250 534 True 247.0 359 86.232500 2482 3044 2 chr3D.!!$R2 562
5 TraesCS7D01G249700 chr3B 694178179 694178713 534 True 249.0 344 88.934000 2482 3044 2 chr3B.!!$R1 562
6 TraesCS7D01G249700 chr2A 749525299 749525832 533 False 236.0 331 85.215000 2482 3044 2 chr2A.!!$F3 562
7 TraesCS7D01G249700 chr5A 654558757 654559290 533 False 228.5 316 87.500000 2482 3044 2 chr5A.!!$F2 562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
506 508 0.674895 AGACGGCAGGTGAGAATTGC 60.675 55.0 0.0 0.0 37.11 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2077 3623 0.237235 ACAACACCAATAACGCAGCG 59.763 50.0 14.82 14.82 0.0 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 4.572795 GCAGCATAAGGAAGGTAGAAGAAC 59.427 45.833 0.00 0.00 0.00 3.01
115 116 3.059120 GGTAGAAGAACCAGCAAAACGAC 60.059 47.826 0.00 0.00 39.50 4.34
120 121 1.264288 GAACCAGCAAAACGACCAGAG 59.736 52.381 0.00 0.00 0.00 3.35
145 146 1.152989 CCAGCTCGATCTGCTTGCTC 61.153 60.000 10.79 0.00 38.92 4.26
241 242 2.813226 GATGTACCCGGCCTGCAACA 62.813 60.000 0.00 1.43 0.00 3.33
242 243 2.281900 GTACCCGGCCTGCAACAA 60.282 61.111 0.00 0.00 0.00 2.83
243 244 2.281900 TACCCGGCCTGCAACAAC 60.282 61.111 0.00 0.00 0.00 3.32
244 245 3.121406 TACCCGGCCTGCAACAACA 62.121 57.895 0.00 0.00 0.00 3.33
245 246 2.626255 TACCCGGCCTGCAACAACAA 62.626 55.000 0.00 0.00 0.00 2.83
246 247 2.027460 CCGGCCTGCAACAACAAC 59.973 61.111 0.00 0.00 0.00 3.32
262 263 6.287589 ACAACAACAACAATAACAAGGGAA 57.712 33.333 0.00 0.00 0.00 3.97
306 307 5.686124 CGGAGCTTAAGAAGAGGATGGAAAT 60.686 44.000 6.67 0.00 0.00 2.17
333 335 7.381789 AAGGTAGGAGAAAGAAAGAGAACTT 57.618 36.000 0.00 0.00 38.05 2.66
368 370 2.653702 GCAGCGGCGATAGATCCT 59.346 61.111 12.98 0.00 39.76 3.24
506 508 0.674895 AGACGGCAGGTGAGAATTGC 60.675 55.000 0.00 0.00 37.11 3.56
594 596 2.171448 AGATGCTAACCTCCATGTCCAC 59.829 50.000 0.00 0.00 0.00 4.02
604 606 4.129737 ATGTCCACGTCCGCCTCG 62.130 66.667 0.00 0.00 0.00 4.63
804 807 1.914798 AGCCATTCTCTTCCTTGCTCT 59.085 47.619 0.00 0.00 0.00 4.09
869 2405 1.596934 GATCCCGCTTCTGACACCA 59.403 57.895 0.00 0.00 0.00 4.17
906 2442 1.136891 CACATCGGCCAGATCACTACA 59.863 52.381 2.24 0.00 37.52 2.74
1059 2605 0.111446 CACCACCACCACCACCATTA 59.889 55.000 0.00 0.00 0.00 1.90
1071 2617 1.633432 CCACCATTACCTTGTCCTCCA 59.367 52.381 0.00 0.00 0.00 3.86
1076 2622 1.263356 TTACCTTGTCCTCCACCTCG 58.737 55.000 0.00 0.00 0.00 4.63
1131 2677 1.671901 GCACTCGGAGGAGGAGAAGG 61.672 65.000 10.23 0.00 44.93 3.46
2053 3599 2.097825 GACCAGGAGTAGTCGGCTTTA 58.902 52.381 0.00 0.00 0.00 1.85
2066 3612 3.551259 GCTTTAGCCTGGCACTACA 57.449 52.632 22.65 0.00 34.31 2.74
2067 3613 1.821216 GCTTTAGCCTGGCACTACAA 58.179 50.000 22.65 4.77 34.31 2.41
2069 3615 2.615493 GCTTTAGCCTGGCACTACAAGA 60.615 50.000 22.65 0.00 34.31 3.02
2070 3616 3.265791 CTTTAGCCTGGCACTACAAGAG 58.734 50.000 22.65 3.22 0.00 2.85
2071 3617 0.537188 TAGCCTGGCACTACAAGAGC 59.463 55.000 22.65 0.00 0.00 4.09
2072 3618 1.197430 AGCCTGGCACTACAAGAGCT 61.197 55.000 22.65 0.00 32.26 4.09
2073 3619 0.537188 GCCTGGCACTACAAGAGCTA 59.463 55.000 15.17 0.00 32.26 3.32
2074 3620 1.472376 GCCTGGCACTACAAGAGCTAG 60.472 57.143 15.17 3.36 39.40 3.42
2075 3621 1.472376 CCTGGCACTACAAGAGCTAGC 60.472 57.143 6.62 6.62 38.63 3.42
2076 3622 0.537188 TGGCACTACAAGAGCTAGCC 59.463 55.000 12.13 2.81 39.91 3.93
2077 3623 0.179070 GGCACTACAAGAGCTAGCCC 60.179 60.000 12.13 0.00 35.77 5.19
2078 3624 0.528684 GCACTACAAGAGCTAGCCCG 60.529 60.000 12.13 0.00 0.00 6.13
2079 3625 0.528684 CACTACAAGAGCTAGCCCGC 60.529 60.000 12.13 0.94 0.00 6.13
2080 3626 0.684805 ACTACAAGAGCTAGCCCGCT 60.685 55.000 12.13 3.63 44.33 5.52
2081 3627 0.249238 CTACAAGAGCTAGCCCGCTG 60.249 60.000 12.13 5.45 41.08 5.18
2082 3628 2.298158 TACAAGAGCTAGCCCGCTGC 62.298 60.000 12.13 1.45 41.08 5.25
2091 3637 3.131478 GCCCGCTGCGTTATTGGT 61.131 61.111 21.59 0.00 0.00 3.67
2092 3638 2.791256 CCCGCTGCGTTATTGGTG 59.209 61.111 21.59 2.41 0.00 4.17
2109 3655 8.980610 GTTATTGGTGTTGTTGGGTTTATAAAC 58.019 33.333 18.30 18.30 38.17 2.01
2111 3657 5.903810 TGGTGTTGTTGGGTTTATAAACAC 58.096 37.500 25.59 23.61 44.08 3.32
2152 3698 9.743581 TTTTAAAATATTACTCCCTCCGTTTCT 57.256 29.630 0.00 0.00 0.00 2.52
2156 3702 9.916360 AAAATATTACTCCCTCCGTTTCTAAAT 57.084 29.630 0.00 0.00 0.00 1.40
2161 3707 8.726870 TTACTCCCTCCGTTTCTAAATATTTG 57.273 34.615 11.05 1.65 0.00 2.32
2162 3708 5.589050 ACTCCCTCCGTTTCTAAATATTTGC 59.411 40.000 11.05 0.00 0.00 3.68
2163 3709 5.751586 TCCCTCCGTTTCTAAATATTTGCT 58.248 37.500 11.05 0.00 0.00 3.91
2164 3710 6.184789 TCCCTCCGTTTCTAAATATTTGCTT 58.815 36.000 11.05 0.00 0.00 3.91
2165 3711 6.661805 TCCCTCCGTTTCTAAATATTTGCTTT 59.338 34.615 11.05 0.00 0.00 3.51
2166 3712 7.177744 TCCCTCCGTTTCTAAATATTTGCTTTT 59.822 33.333 11.05 0.00 0.00 2.27
2167 3713 7.817478 CCCTCCGTTTCTAAATATTTGCTTTTT 59.183 33.333 11.05 0.00 0.00 1.94
2209 3755 9.457436 ACTATCACATACGGATGTATATACACA 57.543 33.333 14.23 0.00 44.82 3.72
2213 3759 9.457436 TCACATACGGATGTATATACACATAGT 57.543 33.333 14.23 16.02 44.82 2.12
2242 3788 5.940470 AGTGTAGATTCACTCATTTTGGTCC 59.060 40.000 0.00 0.00 44.07 4.46
2243 3789 4.935205 TGTAGATTCACTCATTTTGGTCCG 59.065 41.667 0.00 0.00 0.00 4.79
2244 3790 4.021102 AGATTCACTCATTTTGGTCCGT 57.979 40.909 0.00 0.00 0.00 4.69
2245 3791 5.160607 AGATTCACTCATTTTGGTCCGTA 57.839 39.130 0.00 0.00 0.00 4.02
2246 3792 5.745227 AGATTCACTCATTTTGGTCCGTAT 58.255 37.500 0.00 0.00 0.00 3.06
2247 3793 5.586243 AGATTCACTCATTTTGGTCCGTATG 59.414 40.000 0.00 0.00 0.00 2.39
2248 3794 4.280436 TCACTCATTTTGGTCCGTATGT 57.720 40.909 0.00 0.00 0.00 2.29
2249 3795 5.408880 TCACTCATTTTGGTCCGTATGTA 57.591 39.130 0.00 0.00 0.00 2.29
2250 3796 5.416083 TCACTCATTTTGGTCCGTATGTAG 58.584 41.667 0.00 0.00 0.00 2.74
2251 3797 5.046878 TCACTCATTTTGGTCCGTATGTAGT 60.047 40.000 0.00 0.00 0.00 2.73
2252 3798 5.291128 CACTCATTTTGGTCCGTATGTAGTC 59.709 44.000 0.00 0.00 0.00 2.59
2253 3799 5.046878 ACTCATTTTGGTCCGTATGTAGTCA 60.047 40.000 0.00 0.00 0.00 3.41
2254 3800 5.172934 TCATTTTGGTCCGTATGTAGTCAC 58.827 41.667 0.00 0.00 0.00 3.67
2255 3801 4.877378 TTTTGGTCCGTATGTAGTCACT 57.123 40.909 0.00 0.00 0.00 3.41
2256 3802 4.877378 TTTGGTCCGTATGTAGTCACTT 57.123 40.909 0.00 0.00 0.00 3.16
2257 3803 3.861276 TGGTCCGTATGTAGTCACTTG 57.139 47.619 0.00 0.00 0.00 3.16
2258 3804 3.159472 TGGTCCGTATGTAGTCACTTGT 58.841 45.455 0.00 0.00 0.00 3.16
2259 3805 3.575256 TGGTCCGTATGTAGTCACTTGTT 59.425 43.478 0.00 0.00 0.00 2.83
2260 3806 3.924686 GGTCCGTATGTAGTCACTTGTTG 59.075 47.826 0.00 0.00 0.00 3.33
2261 3807 4.321452 GGTCCGTATGTAGTCACTTGTTGA 60.321 45.833 0.00 0.00 0.00 3.18
2262 3808 5.224888 GTCCGTATGTAGTCACTTGTTGAA 58.775 41.667 0.00 0.00 35.39 2.69
2263 3809 5.693104 GTCCGTATGTAGTCACTTGTTGAAA 59.307 40.000 0.00 0.00 35.39 2.69
2264 3810 6.367969 GTCCGTATGTAGTCACTTGTTGAAAT 59.632 38.462 0.00 0.00 35.39 2.17
2265 3811 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
2266 3812 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
2267 3813 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
2268 3814 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
2269 3815 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
2270 3816 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
2271 3817 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
2272 3818 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
2273 3819 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
2274 3820 8.964476 AGTCACTTGTTGAAATCTCTAGAAAA 57.036 30.769 0.00 0.00 35.39 2.29
2275 3821 9.396022 AGTCACTTGTTGAAATCTCTAGAAAAA 57.604 29.630 0.00 0.00 35.39 1.94
2276 3822 9.439537 GTCACTTGTTGAAATCTCTAGAAAAAC 57.560 33.333 0.00 0.00 35.39 2.43
2277 3823 9.173021 TCACTTGTTGAAATCTCTAGAAAAACA 57.827 29.630 0.00 0.00 0.00 2.83
2278 3824 9.787532 CACTTGTTGAAATCTCTAGAAAAACAA 57.212 29.630 0.00 4.48 35.60 2.83
2295 3841 8.520351 AGAAAAACAAATATTTAGGAACGGAGG 58.480 33.333 0.00 0.00 0.00 4.30
2296 3842 8.411991 AAAAACAAATATTTAGGAACGGAGGA 57.588 30.769 0.00 0.00 0.00 3.71
2297 3843 8.411991 AAAACAAATATTTAGGAACGGAGGAA 57.588 30.769 0.00 0.00 0.00 3.36
2298 3844 7.625828 AACAAATATTTAGGAACGGAGGAAG 57.374 36.000 0.00 0.00 0.00 3.46
2305 3851 3.103080 AGGAACGGAGGAAGTAGATGT 57.897 47.619 0.00 0.00 0.00 3.06
2311 3857 5.517322 ACGGAGGAAGTAGATGTGTTATC 57.483 43.478 0.00 0.00 0.00 1.75
2314 3860 6.183360 ACGGAGGAAGTAGATGTGTTATCTTC 60.183 42.308 0.00 0.00 0.00 2.87
2317 3863 8.915036 GGAGGAAGTAGATGTGTTATCTTCTTA 58.085 37.037 8.22 0.00 36.40 2.10
2404 3950 9.996554 ATATCGGTGTAATTAGATTCATCACAA 57.003 29.630 0.00 0.00 0.00 3.33
2405 3951 8.731275 ATCGGTGTAATTAGATTCATCACAAA 57.269 30.769 0.00 0.00 0.00 2.83
2406 3952 8.554835 TCGGTGTAATTAGATTCATCACAAAA 57.445 30.769 0.00 0.00 0.00 2.44
2407 3953 9.173021 TCGGTGTAATTAGATTCATCACAAAAT 57.827 29.630 0.00 0.00 0.00 1.82
2408 3954 9.225201 CGGTGTAATTAGATTCATCACAAAATG 57.775 33.333 0.00 0.00 0.00 2.32
2644 4190 4.292977 AGCAAGCTACAACACAAAAGAC 57.707 40.909 0.00 0.00 0.00 3.01
2673 4221 2.279186 CTGACACACACCGCGTCA 60.279 61.111 4.92 0.00 37.33 4.35
2708 4257 1.446272 CTCCGAAGACCACCGCTTC 60.446 63.158 0.00 0.00 38.65 3.86
2750 4299 1.188219 ACACCATCCACTCTGAGCGT 61.188 55.000 4.19 0.00 0.00 5.07
2761 4310 3.380004 CACTCTGAGCGTCTAAGAGGAAT 59.620 47.826 19.33 3.04 42.05 3.01
2770 4319 3.347216 GTCTAAGAGGAATTGGCAAGCA 58.653 45.455 5.96 0.00 0.00 3.91
2771 4320 3.758554 GTCTAAGAGGAATTGGCAAGCAA 59.241 43.478 5.96 0.00 0.00 3.91
2876 4456 2.183046 GGAGGAGAGCTGTGACGC 59.817 66.667 0.00 0.00 0.00 5.19
2890 4470 3.379445 ACGCCCCGTCTTGATCGT 61.379 61.111 0.00 0.00 33.69 3.73
2891 4471 2.048023 ACGCCCCGTCTTGATCGTA 61.048 57.895 0.00 0.00 33.69 3.43
2892 4472 1.588139 CGCCCCGTCTTGATCGTAC 60.588 63.158 0.00 0.00 0.00 3.67
2893 4473 1.514087 GCCCCGTCTTGATCGTACA 59.486 57.895 0.00 0.00 0.00 2.90
2894 4474 0.804933 GCCCCGTCTTGATCGTACAC 60.805 60.000 0.00 0.00 0.00 2.90
2895 4475 0.528924 CCCCGTCTTGATCGTACACA 59.471 55.000 0.00 0.00 0.00 3.72
2896 4476 1.136305 CCCCGTCTTGATCGTACACAT 59.864 52.381 0.00 0.00 0.00 3.21
2897 4477 2.418197 CCCCGTCTTGATCGTACACATT 60.418 50.000 0.00 0.00 0.00 2.71
2898 4478 3.259064 CCCGTCTTGATCGTACACATTT 58.741 45.455 0.00 0.00 0.00 2.32
2899 4479 3.062099 CCCGTCTTGATCGTACACATTTG 59.938 47.826 0.00 0.00 0.00 2.32
2900 4480 3.678072 CCGTCTTGATCGTACACATTTGT 59.322 43.478 0.00 0.00 40.02 2.83
2915 4495 6.837307 CACATTTGTGTGTATGATCGAAAC 57.163 37.500 2.48 0.00 40.96 2.78
2916 4496 5.504409 CACATTTGTGTGTATGATCGAAACG 59.496 40.000 2.48 0.00 40.96 3.60
2917 4497 4.655440 TTTGTGTGTATGATCGAAACGG 57.345 40.909 0.00 0.00 0.00 4.44
2918 4498 2.612604 TGTGTGTATGATCGAAACGGG 58.387 47.619 0.00 0.00 0.00 5.28
2919 4499 1.931172 GTGTGTATGATCGAAACGGGG 59.069 52.381 0.00 0.00 0.00 5.73
2920 4500 1.134640 TGTGTATGATCGAAACGGGGG 60.135 52.381 0.00 0.00 0.00 5.40
2921 4501 0.179067 TGTATGATCGAAACGGGGGC 60.179 55.000 0.00 0.00 0.00 5.80
2922 4502 1.068417 TATGATCGAAACGGGGGCG 59.932 57.895 0.00 0.00 0.00 6.13
2923 4503 1.678598 TATGATCGAAACGGGGGCGT 61.679 55.000 0.00 0.00 0.00 5.68
2924 4504 2.889018 GATCGAAACGGGGGCGTC 60.889 66.667 0.00 0.00 0.00 5.19
2925 4505 3.652539 GATCGAAACGGGGGCGTCA 62.653 63.158 0.00 0.00 0.00 4.35
2926 4506 3.945304 ATCGAAACGGGGGCGTCAC 62.945 63.158 0.00 0.00 0.00 3.67
2927 4507 4.973055 CGAAACGGGGGCGTCACA 62.973 66.667 0.00 0.00 0.00 3.58
2928 4508 3.351416 GAAACGGGGGCGTCACAC 61.351 66.667 0.00 0.00 0.00 3.82
2929 4509 4.941309 AAACGGGGGCGTCACACC 62.941 66.667 0.00 0.00 0.00 4.16
2977 4557 4.405680 TCCCAACAGAGATACAACATCGAT 59.594 41.667 0.00 0.00 0.00 3.59
2981 4561 5.582689 ACAGAGATACAACATCGATGACA 57.417 39.130 31.33 12.98 0.00 3.58
2990 4570 1.138069 ACATCGATGACACCGCCAATA 59.862 47.619 31.33 0.00 0.00 1.90
2993 4573 1.410882 TCGATGACACCGCCAATATGA 59.589 47.619 0.00 0.00 0.00 2.15
3031 4613 3.302347 CTTTCGCCCGGAGACAGCT 62.302 63.158 0.73 0.00 0.00 4.24
3040 4622 1.178276 CGGAGACAGCTACCAACTCT 58.822 55.000 0.00 0.00 0.00 3.24
3044 4626 4.017808 GGAGACAGCTACCAACTCTAAGA 58.982 47.826 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 0.250295 TCCTCTGGTCGTTTTGCTGG 60.250 55.000 0.00 0.00 0.00 4.85
115 116 0.467106 TCGAGCTGGAGATCCTCTGG 60.467 60.000 0.00 0.00 36.82 3.86
120 121 0.038343 GCAGATCGAGCTGGAGATCC 60.038 60.000 30.05 10.17 43.03 3.36
145 146 0.741927 TGATCGACACAGGCATGCAG 60.742 55.000 21.36 13.91 0.00 4.41
241 242 5.356426 GCTTCCCTTGTTATTGTTGTTGTT 58.644 37.500 0.00 0.00 0.00 2.83
242 243 4.202212 GGCTTCCCTTGTTATTGTTGTTGT 60.202 41.667 0.00 0.00 0.00 3.32
243 244 4.306600 GGCTTCCCTTGTTATTGTTGTTG 58.693 43.478 0.00 0.00 0.00 3.33
244 245 3.005367 CGGCTTCCCTTGTTATTGTTGTT 59.995 43.478 0.00 0.00 0.00 2.83
245 246 2.556622 CGGCTTCCCTTGTTATTGTTGT 59.443 45.455 0.00 0.00 0.00 3.32
246 247 2.094752 CCGGCTTCCCTTGTTATTGTTG 60.095 50.000 0.00 0.00 0.00 3.33
306 307 8.935741 AGTTCTCTTTCTTTCTCCTACCTTAAA 58.064 33.333 0.00 0.00 0.00 1.52
360 362 0.193069 AGAGCAGCCCCAGGATCTAT 59.807 55.000 0.00 0.00 0.00 1.98
368 370 4.704103 AGTCCGAGAGCAGCCCCA 62.704 66.667 0.00 0.00 0.00 4.96
506 508 1.202627 GCACCTGATCCTCCAAGCTAG 60.203 57.143 0.00 0.00 0.00 3.42
859 2395 3.948719 GGGGCCGTGGTGTCAGAA 61.949 66.667 0.00 0.00 0.00 3.02
906 2442 2.665185 GCGGTTTGACTCGTGGCT 60.665 61.111 0.00 0.00 0.00 4.75
1015 2561 2.126228 GACGACGGCATGGACGAA 60.126 61.111 0.00 0.00 35.20 3.85
1037 2583 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
1038 2584 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
1039 2585 2.655077 AATGGTGGTGGTGGTGGTGG 62.655 60.000 0.00 0.00 0.00 4.61
1040 2586 0.111446 TAATGGTGGTGGTGGTGGTG 59.889 55.000 0.00 0.00 0.00 4.17
1041 2587 0.111639 GTAATGGTGGTGGTGGTGGT 59.888 55.000 0.00 0.00 0.00 4.16
1042 2588 0.610785 GGTAATGGTGGTGGTGGTGG 60.611 60.000 0.00 0.00 0.00 4.61
1059 2605 1.152312 ACGAGGTGGAGGACAAGGT 60.152 57.895 0.00 0.00 0.00 3.50
1071 2617 0.250338 GGCAACAAGGAAGACGAGGT 60.250 55.000 0.00 0.00 0.00 3.85
1076 2622 0.586802 GTGACGGCAACAAGGAAGAC 59.413 55.000 0.00 0.00 0.00 3.01
1435 2981 4.334118 TCGGGGAGGACGTCGTCA 62.334 66.667 32.23 14.66 33.68 4.35
2053 3599 1.197430 AGCTCTTGTAGTGCCAGGCT 61.197 55.000 14.15 0.00 35.47 4.58
2056 3602 1.472376 GGCTAGCTCTTGTAGTGCCAG 60.472 57.143 15.72 0.00 37.79 4.85
2061 3607 0.684805 AGCGGGCTAGCTCTTGTAGT 60.685 55.000 13.91 0.00 45.67 2.73
2062 3608 2.119886 AGCGGGCTAGCTCTTGTAG 58.880 57.895 13.91 0.00 45.67 2.74
2063 3609 4.356979 AGCGGGCTAGCTCTTGTA 57.643 55.556 13.91 0.00 45.67 2.41
2070 3616 1.887707 AATAACGCAGCGGGCTAGC 60.888 57.895 21.15 6.04 41.67 3.42
2071 3617 1.498865 CCAATAACGCAGCGGGCTAG 61.499 60.000 21.15 5.80 41.67 3.42
2072 3618 1.522806 CCAATAACGCAGCGGGCTA 60.523 57.895 21.15 7.86 41.67 3.93
2073 3619 2.824041 CCAATAACGCAGCGGGCT 60.824 61.111 21.15 5.61 41.67 5.19
2074 3620 3.131478 ACCAATAACGCAGCGGGC 61.131 61.111 21.15 0.00 39.90 6.13
2075 3621 1.582610 AACACCAATAACGCAGCGGG 61.583 55.000 21.15 12.67 0.00 6.13
2076 3622 0.454285 CAACACCAATAACGCAGCGG 60.454 55.000 21.15 1.91 0.00 5.52
2077 3623 0.237235 ACAACACCAATAACGCAGCG 59.763 50.000 14.82 14.82 0.00 5.18
2078 3624 2.050691 CAACAACACCAATAACGCAGC 58.949 47.619 0.00 0.00 0.00 5.25
2079 3625 2.606795 CCCAACAACACCAATAACGCAG 60.607 50.000 0.00 0.00 0.00 5.18
2080 3626 1.338337 CCCAACAACACCAATAACGCA 59.662 47.619 0.00 0.00 0.00 5.24
2081 3627 1.338655 ACCCAACAACACCAATAACGC 59.661 47.619 0.00 0.00 0.00 4.84
2082 3628 3.719173 AACCCAACAACACCAATAACG 57.281 42.857 0.00 0.00 0.00 3.18
2083 3629 8.980610 GTTTATAAACCCAACAACACCAATAAC 58.019 33.333 16.14 0.00 32.82 1.89
2084 3630 8.701895 TGTTTATAAACCCAACAACACCAATAA 58.298 29.630 22.47 0.00 38.11 1.40
2085 3631 8.142551 GTGTTTATAAACCCAACAACACCAATA 58.857 33.333 22.47 0.00 38.60 1.90
2086 3632 6.987404 GTGTTTATAAACCCAACAACACCAAT 59.013 34.615 22.47 0.00 38.60 3.16
2087 3633 6.070995 TGTGTTTATAAACCCAACAACACCAA 60.071 34.615 22.47 0.00 42.10 3.67
2088 3634 5.421056 TGTGTTTATAAACCCAACAACACCA 59.579 36.000 22.47 0.12 42.10 4.17
2089 3635 5.903810 TGTGTTTATAAACCCAACAACACC 58.096 37.500 22.47 0.00 42.10 4.16
2090 3636 7.829378 TTTGTGTTTATAAACCCAACAACAC 57.171 32.000 21.19 13.52 42.77 3.32
2091 3637 8.718734 GTTTTTGTGTTTATAAACCCAACAACA 58.281 29.630 30.02 21.87 41.83 3.33
2092 3638 8.937884 AGTTTTTGTGTTTATAAACCCAACAAC 58.062 29.630 28.95 28.95 42.18 3.32
2135 3681 9.338622 CAAATATTTAGAAACGGAGGGAGTAAT 57.661 33.333 0.00 0.00 0.00 1.89
2136 3682 7.281549 GCAAATATTTAGAAACGGAGGGAGTAA 59.718 37.037 0.00 0.00 0.00 2.24
2137 3683 6.764560 GCAAATATTTAGAAACGGAGGGAGTA 59.235 38.462 0.00 0.00 0.00 2.59
2138 3684 5.589050 GCAAATATTTAGAAACGGAGGGAGT 59.411 40.000 0.00 0.00 0.00 3.85
2139 3685 5.823045 AGCAAATATTTAGAAACGGAGGGAG 59.177 40.000 0.00 0.00 0.00 4.30
2140 3686 5.751586 AGCAAATATTTAGAAACGGAGGGA 58.248 37.500 0.00 0.00 0.00 4.20
2141 3687 6.451064 AAGCAAATATTTAGAAACGGAGGG 57.549 37.500 0.00 0.00 0.00 4.30
2142 3688 8.757164 AAAAAGCAAATATTTAGAAACGGAGG 57.243 30.769 0.00 0.00 0.00 4.30
2174 3720 9.607988 ACATCCGTATGTGATAGTTCATTTAAA 57.392 29.630 0.00 0.00 44.79 1.52
2183 3729 9.457436 TGTGTATATACATCCGTATGTGATAGT 57.543 33.333 18.27 0.00 45.99 2.12
2187 3733 9.457436 ACTATGTGTATATACATCCGTATGTGA 57.543 33.333 18.27 0.00 45.99 3.58
2205 3751 9.026121 AGTGAATCTACACTCTAAACTATGTGT 57.974 33.333 0.00 0.00 46.36 3.72
2219 3765 5.163854 CGGACCAAAATGAGTGAATCTACAC 60.164 44.000 0.00 0.00 40.60 2.90
2220 3766 4.935205 CGGACCAAAATGAGTGAATCTACA 59.065 41.667 0.00 0.00 0.00 2.74
2221 3767 4.935808 ACGGACCAAAATGAGTGAATCTAC 59.064 41.667 0.00 0.00 0.00 2.59
2222 3768 5.160607 ACGGACCAAAATGAGTGAATCTA 57.839 39.130 0.00 0.00 0.00 1.98
2223 3769 4.021102 ACGGACCAAAATGAGTGAATCT 57.979 40.909 0.00 0.00 0.00 2.40
2224 3770 5.354234 ACATACGGACCAAAATGAGTGAATC 59.646 40.000 5.05 0.00 0.00 2.52
2225 3771 5.253330 ACATACGGACCAAAATGAGTGAAT 58.747 37.500 5.05 0.00 0.00 2.57
2226 3772 4.647611 ACATACGGACCAAAATGAGTGAA 58.352 39.130 5.05 0.00 0.00 3.18
2227 3773 4.280436 ACATACGGACCAAAATGAGTGA 57.720 40.909 5.05 0.00 0.00 3.41
2228 3774 5.175859 ACTACATACGGACCAAAATGAGTG 58.824 41.667 5.05 0.00 0.00 3.51
2229 3775 5.046878 TGACTACATACGGACCAAAATGAGT 60.047 40.000 5.05 4.53 0.00 3.41
2230 3776 5.291128 GTGACTACATACGGACCAAAATGAG 59.709 44.000 5.05 2.14 0.00 2.90
2231 3777 5.046878 AGTGACTACATACGGACCAAAATGA 60.047 40.000 5.05 0.00 0.00 2.57
2232 3778 5.175859 AGTGACTACATACGGACCAAAATG 58.824 41.667 0.00 0.00 0.00 2.32
2233 3779 5.416271 AGTGACTACATACGGACCAAAAT 57.584 39.130 0.00 0.00 0.00 1.82
2234 3780 4.877378 AGTGACTACATACGGACCAAAA 57.123 40.909 0.00 0.00 0.00 2.44
2235 3781 4.039488 ACAAGTGACTACATACGGACCAAA 59.961 41.667 0.00 0.00 0.00 3.28
2236 3782 3.575256 ACAAGTGACTACATACGGACCAA 59.425 43.478 0.00 0.00 0.00 3.67
2237 3783 3.159472 ACAAGTGACTACATACGGACCA 58.841 45.455 0.00 0.00 0.00 4.02
2238 3784 3.863142 ACAAGTGACTACATACGGACC 57.137 47.619 0.00 0.00 0.00 4.46
2239 3785 4.801891 TCAACAAGTGACTACATACGGAC 58.198 43.478 0.00 0.00 0.00 4.79
2240 3786 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
2241 3787 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
2242 3788 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
2243 3789 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
2245 3791 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
2246 3792 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
2247 3793 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
2249 3795 8.964476 TTTTCTAGAGATTTCAACAAGTGACT 57.036 30.769 0.00 0.00 35.39 3.41
2250 3796 9.439537 GTTTTTCTAGAGATTTCAACAAGTGAC 57.560 33.333 0.00 0.00 35.39 3.67
2251 3797 9.173021 TGTTTTTCTAGAGATTTCAACAAGTGA 57.827 29.630 0.00 0.00 0.00 3.41
2252 3798 9.787532 TTGTTTTTCTAGAGATTTCAACAAGTG 57.212 29.630 6.81 0.00 31.15 3.16
2269 3815 8.520351 CCTCCGTTCCTAAATATTTGTTTTTCT 58.480 33.333 11.05 0.00 0.00 2.52
2270 3816 8.517056 TCCTCCGTTCCTAAATATTTGTTTTTC 58.483 33.333 11.05 0.00 0.00 2.29
2271 3817 8.411991 TCCTCCGTTCCTAAATATTTGTTTTT 57.588 30.769 11.05 0.00 0.00 1.94
2272 3818 8.411991 TTCCTCCGTTCCTAAATATTTGTTTT 57.588 30.769 11.05 0.00 0.00 2.43
2273 3819 7.668469 ACTTCCTCCGTTCCTAAATATTTGTTT 59.332 33.333 11.05 0.00 0.00 2.83
2274 3820 7.173032 ACTTCCTCCGTTCCTAAATATTTGTT 58.827 34.615 11.05 0.00 0.00 2.83
2275 3821 6.718294 ACTTCCTCCGTTCCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
2276 3822 8.202137 TCTACTTCCTCCGTTCCTAAATATTTG 58.798 37.037 11.05 1.40 0.00 2.32
2277 3823 8.315220 TCTACTTCCTCCGTTCCTAAATATTT 57.685 34.615 5.89 5.89 0.00 1.40
2278 3824 7.909485 TCTACTTCCTCCGTTCCTAAATATT 57.091 36.000 0.00 0.00 0.00 1.28
2279 3825 7.509659 ACATCTACTTCCTCCGTTCCTAAATAT 59.490 37.037 0.00 0.00 0.00 1.28
2280 3826 6.837568 ACATCTACTTCCTCCGTTCCTAAATA 59.162 38.462 0.00 0.00 0.00 1.40
2281 3827 5.661759 ACATCTACTTCCTCCGTTCCTAAAT 59.338 40.000 0.00 0.00 0.00 1.40
2282 3828 5.021458 ACATCTACTTCCTCCGTTCCTAAA 58.979 41.667 0.00 0.00 0.00 1.85
2283 3829 4.401519 CACATCTACTTCCTCCGTTCCTAA 59.598 45.833 0.00 0.00 0.00 2.69
2284 3830 3.952323 CACATCTACTTCCTCCGTTCCTA 59.048 47.826 0.00 0.00 0.00 2.94
2285 3831 2.761208 CACATCTACTTCCTCCGTTCCT 59.239 50.000 0.00 0.00 0.00 3.36
2286 3832 2.496470 ACACATCTACTTCCTCCGTTCC 59.504 50.000 0.00 0.00 0.00 3.62
2287 3833 3.870633 ACACATCTACTTCCTCCGTTC 57.129 47.619 0.00 0.00 0.00 3.95
2288 3834 5.657302 AGATAACACATCTACTTCCTCCGTT 59.343 40.000 0.00 0.00 0.00 4.44
2289 3835 5.202004 AGATAACACATCTACTTCCTCCGT 58.798 41.667 0.00 0.00 0.00 4.69
2290 3836 5.776173 AGATAACACATCTACTTCCTCCG 57.224 43.478 0.00 0.00 0.00 4.63
2291 3837 7.354751 AGAAGATAACACATCTACTTCCTCC 57.645 40.000 0.00 0.00 35.73 4.30
2378 3924 9.996554 TTGTGATGAATCTAATTACACCGATAT 57.003 29.630 0.00 0.00 0.00 1.63
2379 3925 9.825109 TTTGTGATGAATCTAATTACACCGATA 57.175 29.630 0.00 0.00 0.00 2.92
2380 3926 8.731275 TTTGTGATGAATCTAATTACACCGAT 57.269 30.769 0.00 0.00 0.00 4.18
2381 3927 8.554835 TTTTGTGATGAATCTAATTACACCGA 57.445 30.769 0.00 0.00 0.00 4.69
2382 3928 9.225201 CATTTTGTGATGAATCTAATTACACCG 57.775 33.333 0.00 0.00 0.00 4.94
2418 3964 8.983724 CCGACAACCACAATATTAAACAAAAAT 58.016 29.630 0.00 0.00 0.00 1.82
2419 3965 7.042658 GCCGACAACCACAATATTAAACAAAAA 60.043 33.333 0.00 0.00 0.00 1.94
2420 3966 6.421202 GCCGACAACCACAATATTAAACAAAA 59.579 34.615 0.00 0.00 0.00 2.44
2421 3967 5.921408 GCCGACAACCACAATATTAAACAAA 59.079 36.000 0.00 0.00 0.00 2.83
2422 3968 5.009710 TGCCGACAACCACAATATTAAACAA 59.990 36.000 0.00 0.00 0.00 2.83
2423 3969 4.519350 TGCCGACAACCACAATATTAAACA 59.481 37.500 0.00 0.00 0.00 2.83
2424 3970 5.049398 TGCCGACAACCACAATATTAAAC 57.951 39.130 0.00 0.00 0.00 2.01
2425 3971 5.707242 TTGCCGACAACCACAATATTAAA 57.293 34.783 0.00 0.00 0.00 1.52
2426 3972 5.906113 ATTGCCGACAACCACAATATTAA 57.094 34.783 0.00 0.00 38.99 1.40
2427 3973 5.906113 AATTGCCGACAACCACAATATTA 57.094 34.783 0.00 0.00 38.99 0.98
2428 3974 4.799564 AATTGCCGACAACCACAATATT 57.200 36.364 0.00 0.00 38.99 1.28
2429 3975 4.799564 AAATTGCCGACAACCACAATAT 57.200 36.364 0.00 0.00 38.99 1.28
2430 3976 4.302455 CAAAATTGCCGACAACCACAATA 58.698 39.130 0.00 0.00 38.99 1.90
2461 4007 7.552458 AAAAATGCCTTTAACTTTGACCAAG 57.448 32.000 0.00 0.00 38.64 3.61
2541 4087 2.228138 TCGCAACGAGTGGTAGTTTT 57.772 45.000 0.00 0.00 0.00 2.43
2644 4190 1.137872 GTGTGTCAGCTGAGGATAGGG 59.862 57.143 18.89 0.00 0.00 3.53
2708 4257 1.278238 GACAAGCGATGTTCTACGGG 58.722 55.000 0.00 0.00 44.12 5.28
2731 4280 1.188219 ACGCTCAGAGTGGATGGTGT 61.188 55.000 15.56 0.00 0.00 4.16
2750 4299 3.719268 TGCTTGCCAATTCCTCTTAGA 57.281 42.857 0.00 0.00 0.00 2.10
2761 4310 0.757512 TCATGCCTTTTGCTTGCCAA 59.242 45.000 0.00 0.00 43.07 4.52
2813 4392 2.093306 ACTTTGCAGCGCTATGTACA 57.907 45.000 10.99 0.00 0.00 2.90
2874 4454 1.588139 GTACGATCAAGACGGGGCG 60.588 63.158 0.00 0.00 34.93 6.13
2876 4456 0.528924 TGTGTACGATCAAGACGGGG 59.471 55.000 0.00 0.00 34.93 5.73
2893 4473 5.390461 CCGTTTCGATCATACACACAAATGT 60.390 40.000 0.00 0.00 40.80 2.71
2894 4474 5.021389 CCGTTTCGATCATACACACAAATG 58.979 41.667 0.00 0.00 0.00 2.32
2895 4475 4.094294 CCCGTTTCGATCATACACACAAAT 59.906 41.667 0.00 0.00 0.00 2.32
2896 4476 3.433957 CCCGTTTCGATCATACACACAAA 59.566 43.478 0.00 0.00 0.00 2.83
2897 4477 2.997303 CCCGTTTCGATCATACACACAA 59.003 45.455 0.00 0.00 0.00 3.33
2898 4478 2.612604 CCCGTTTCGATCATACACACA 58.387 47.619 0.00 0.00 0.00 3.72
2899 4479 1.931172 CCCCGTTTCGATCATACACAC 59.069 52.381 0.00 0.00 0.00 3.82
2900 4480 1.134640 CCCCCGTTTCGATCATACACA 60.135 52.381 0.00 0.00 0.00 3.72
2901 4481 1.578583 CCCCCGTTTCGATCATACAC 58.421 55.000 0.00 0.00 0.00 2.90
2902 4482 0.179067 GCCCCCGTTTCGATCATACA 60.179 55.000 0.00 0.00 0.00 2.29
2903 4483 1.219522 CGCCCCCGTTTCGATCATAC 61.220 60.000 0.00 0.00 0.00 2.39
2904 4484 1.068417 CGCCCCCGTTTCGATCATA 59.932 57.895 0.00 0.00 0.00 2.15
2905 4485 2.203015 CGCCCCCGTTTCGATCAT 60.203 61.111 0.00 0.00 0.00 2.45
2926 4506 3.299977 TGGAGACACGACCGGGTG 61.300 66.667 3.30 7.99 43.54 4.61
2977 4557 0.533032 TCGTCATATTGGCGGTGTCA 59.467 50.000 1.34 0.00 46.79 3.58
2981 4561 0.756294 TGGATCGTCATATTGGCGGT 59.244 50.000 1.34 0.00 43.92 5.68
2990 4570 1.407618 TCGATTCGGTTGGATCGTCAT 59.592 47.619 6.18 0.00 37.73 3.06
2993 4573 0.102481 CCTCGATTCGGTTGGATCGT 59.898 55.000 6.18 0.00 37.73 3.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.