Multiple sequence alignment - TraesCS7D01G249500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G249500 chr7D 100.000 6639 0 0 3311 9949 220972862 220979500 0.000000e+00 12261.0
1 TraesCS7D01G249500 chr7D 100.000 3049 0 0 1 3049 220969552 220972600 0.000000e+00 5631.0
2 TraesCS7D01G249500 chr7D 96.440 309 6 4 2741 3049 133690950 133691253 1.150000e-138 505.0
3 TraesCS7D01G249500 chr7D 98.800 250 3 0 6478 6727 220975780 220976029 7.090000e-121 446.0
4 TraesCS7D01G249500 chr7D 98.800 250 3 0 6229 6478 220976029 220976278 7.090000e-121 446.0
5 TraesCS7D01G249500 chr7D 97.790 181 3 1 1 181 218739778 218739599 2.700000e-80 311.0
6 TraesCS7D01G249500 chr7D 97.778 180 3 1 1 179 473177818 473177997 9.710000e-80 309.0
7 TraesCS7D01G249500 chr7D 94.958 119 5 1 5286 5404 33478570 33478453 1.710000e-42 185.0
8 TraesCS7D01G249500 chr7D 91.339 127 10 1 5287 5413 268964277 268964152 1.330000e-38 172.0
9 TraesCS7D01G249500 chr7B 96.398 3415 84 14 6548 9949 176002144 175998756 0.000000e+00 5589.0
10 TraesCS7D01G249500 chr7B 97.588 2488 47 7 3327 5808 176005471 176002991 0.000000e+00 4250.0
11 TraesCS7D01G249500 chr7B 95.680 2222 71 14 541 2748 176007671 176005461 0.000000e+00 3548.0
12 TraesCS7D01G249500 chr7B 96.730 367 9 2 5806 6172 176002833 176002470 8.540000e-170 608.0
13 TraesCS7D01G249500 chr7B 95.549 337 14 1 6481 6816 176002471 176002135 1.140000e-148 538.0
14 TraesCS7D01G249500 chr7B 95.181 249 12 0 6230 6478 176002473 176002225 2.600000e-105 394.0
15 TraesCS7D01G249500 chr7B 82.965 317 43 5 168 482 693007090 693007397 9.840000e-70 276.0
16 TraesCS7D01G249500 chr7B 93.496 123 8 0 5282 5404 716093554 716093676 6.140000e-42 183.0
17 TraesCS7D01G249500 chr7B 92.958 71 2 3 6168 6236 428486274 428486205 6.360000e-17 100.0
18 TraesCS7D01G249500 chr7A 95.536 2240 60 8 7713 9949 235467006 235469208 0.000000e+00 3546.0
19 TraesCS7D01G249500 chr7A 96.762 2131 55 9 622 2744 235460338 235462462 0.000000e+00 3541.0
20 TraesCS7D01G249500 chr7A 93.360 1506 34 16 4023 5489 235463308 235464786 0.000000e+00 2167.0
21 TraesCS7D01G249500 chr7A 94.671 1126 40 12 6483 7592 235465855 235466976 0.000000e+00 1729.0
22 TraesCS7D01G249500 chr7A 96.389 720 24 2 3321 4039 235462469 235463187 0.000000e+00 1184.0
23 TraesCS7D01G249500 chr7A 93.794 564 29 4 5608 6171 235465296 235465853 0.000000e+00 843.0
24 TraesCS7D01G249500 chr7A 92.077 467 27 5 166 631 235459673 235460130 0.000000e+00 649.0
25 TraesCS7D01G249500 chr7A 94.355 248 11 3 6230 6476 235465851 235466096 2.620000e-100 377.0
26 TraesCS7D01G249500 chr7A 90.984 122 6 2 5489 5610 235465098 235465214 1.030000e-34 159.0
27 TraesCS7D01G249500 chr7A 100.000 29 0 0 7645 7673 235466977 235467005 5.000000e-03 54.7
28 TraesCS7D01G249500 chr6D 97.452 314 4 3 2740 3049 30213278 30213591 5.290000e-147 532.0
29 TraesCS7D01G249500 chr6D 97.945 292 3 2 2759 3049 410739008 410738719 4.150000e-138 503.0
30 TraesCS7D01G249500 chr6D 93.277 119 8 0 5285 5403 147675688 147675570 1.030000e-39 176.0
31 TraesCS7D01G249500 chr6D 92.000 125 10 0 5286 5410 366701223 366701099 1.030000e-39 176.0
32 TraesCS7D01G249500 chr6D 92.562 121 9 0 5286 5406 9359074 9359194 3.690000e-39 174.0
33 TraesCS7D01G249500 chr6D 92.623 122 8 1 5284 5404 108860645 108860766 3.690000e-39 174.0
34 TraesCS7D01G249500 chr6D 92.623 122 8 1 5284 5404 302751871 302751992 3.690000e-39 174.0
35 TraesCS7D01G249500 chr6D 91.870 123 10 0 5287 5409 319246255 319246377 1.330000e-38 172.0
36 TraesCS7D01G249500 chr6D 93.750 64 2 1 6170 6233 135152493 135152432 2.960000e-15 95.3
37 TraesCS7D01G249500 chr6D 98.148 54 0 1 6182 6234 160314837 160314784 1.060000e-14 93.5
38 TraesCS7D01G249500 chr6D 98.113 53 1 0 6188 6240 194007075 194007127 1.060000e-14 93.5
39 TraesCS7D01G249500 chr6D 98.148 54 0 1 6182 6234 411828837 411828890 1.060000e-14 93.5
40 TraesCS7D01G249500 chr6D 92.188 64 3 1 6170 6233 339937551 339937612 1.380000e-13 89.8
41 TraesCS7D01G249500 chr6D 100.000 47 0 0 6188 6234 389999743 389999697 4.950000e-13 87.9
42 TraesCS7D01G249500 chr6D 89.706 68 2 3 6170 6234 156047502 156047567 2.300000e-11 82.4
43 TraesCS7D01G249500 chr3D 96.815 314 8 2 2737 3049 288686895 288687207 3.180000e-144 523.0
44 TraesCS7D01G249500 chr3D 97.386 306 5 3 2747 3049 39823327 39823022 1.480000e-142 518.0
45 TraesCS7D01G249500 chr3D 98.282 291 4 1 2760 3049 18632791 18632501 8.920000e-140 508.0
46 TraesCS7D01G249500 chr3D 89.920 377 29 4 166 541 102208441 102208073 2.510000e-130 477.0
47 TraesCS7D01G249500 chr3D 83.442 308 42 4 181 486 526262189 526262489 2.740000e-70 278.0
48 TraesCS7D01G249500 chr3D 93.277 119 8 0 5285 5403 208640589 208640707 1.030000e-39 176.0
49 TraesCS7D01G249500 chr3D 93.750 64 2 1 6170 6233 401811886 401811947 2.960000e-15 95.3
50 TraesCS7D01G249500 chr2D 96.141 311 9 3 2740 3049 539703604 539703296 1.150000e-138 505.0
51 TraesCS7D01G249500 chr2D 98.295 176 2 1 1 176 226935949 226935775 3.490000e-79 307.0
52 TraesCS7D01G249500 chr2D 96.237 186 3 3 1 186 433547509 433547690 1.620000e-77 302.0
53 TraesCS7D01G249500 chr2D 94.388 196 6 5 1 193 341205424 341205231 7.560000e-76 296.0
54 TraesCS7D01G249500 chr2D 93.846 65 2 1 6170 6234 262479701 262479763 8.230000e-16 97.1
55 TraesCS7D01G249500 chr2D 92.647 68 4 1 6188 6255 492791694 492791628 8.230000e-16 97.1
56 TraesCS7D01G249500 chr1D 97.945 292 3 3 2759 3049 158245827 158245538 4.150000e-138 503.0
57 TraesCS7D01G249500 chr1D 99.415 171 1 0 1 171 182359916 182359746 2.700000e-80 311.0
58 TraesCS7D01G249500 chr1D 98.182 55 0 1 6181 6234 73677299 73677353 2.960000e-15 95.3
59 TraesCS7D01G249500 chr1D 93.750 64 2 1 6170 6233 201373415 201373354 2.960000e-15 95.3
60 TraesCS7D01G249500 chr1D 91.176 68 3 2 6182 6248 465419914 465419849 1.380000e-13 89.8
61 TraesCS7D01G249500 chr1D 87.838 74 5 2 6160 6233 5011124 5011055 6.400000e-12 84.2
62 TraesCS7D01G249500 chr5D 95.498 311 7 3 2740 3049 555197465 555197769 3.230000e-134 490.0
63 TraesCS7D01G249500 chr5D 97.268 183 3 2 1 182 483016748 483016929 9.710000e-80 309.0
64 TraesCS7D01G249500 chr5D 96.721 183 3 3 1 182 401146966 401147146 1.620000e-77 302.0
65 TraesCS7D01G249500 chr5D 83.548 310 41 4 172 480 215470802 215470502 2.120000e-71 281.0
66 TraesCS7D01G249500 chr5D 93.750 64 2 1 6170 6233 340640340 340640279 2.960000e-15 95.3
67 TraesCS7D01G249500 chr5D 93.750 64 2 1 6170 6233 380457437 380457498 2.960000e-15 95.3
68 TraesCS7D01G249500 chr3B 88.032 376 35 8 167 541 153026793 153026427 4.270000e-118 436.0
69 TraesCS7D01G249500 chr3B 84.727 275 39 3 166 438 92603418 92603691 1.270000e-68 272.0
70 TraesCS7D01G249500 chr5B 85.443 316 38 3 166 480 604739575 604739883 1.250000e-83 322.0
71 TraesCS7D01G249500 chr5B 94.958 119 6 0 5286 5404 38365123 38365241 4.740000e-43 187.0
72 TraesCS7D01G249500 chr4D 100.000 169 0 0 1 169 357491143 357490975 7.500000e-81 313.0
73 TraesCS7D01G249500 chr4D 84.326 319 35 8 166 481 3625450 3625144 2.100000e-76 298.0
74 TraesCS7D01G249500 chr4D 100.000 52 0 0 6188 6239 164649501 164649450 8.230000e-16 97.1
75 TraesCS7D01G249500 chr4D 93.750 64 2 1 6170 6233 363958060 363958121 2.960000e-15 95.3
76 TraesCS7D01G249500 chr4D 98.148 54 0 1 6182 6234 278810177 278810124 1.060000e-14 93.5
77 TraesCS7D01G249500 chr4D 92.308 65 3 1 6170 6234 89229960 89230022 3.830000e-14 91.6
78 TraesCS7D01G249500 chr4D 92.308 65 3 1 6170 6234 290071552 290071614 3.830000e-14 91.6
79 TraesCS7D01G249500 chr4D 93.548 62 3 1 6182 6242 351735547 351735486 3.830000e-14 91.6
80 TraesCS7D01G249500 chr4D 92.188 64 3 1 6170 6233 53170138 53170077 1.380000e-13 89.8
81 TraesCS7D01G249500 chr4D 92.188 64 3 1 6170 6233 87655649 87655588 1.380000e-13 89.8
82 TraesCS7D01G249500 chr4A 83.974 312 41 4 166 476 521942282 521942585 3.520000e-74 291.0
83 TraesCS7D01G249500 chr4A 92.800 125 8 1 5283 5407 153242491 153242614 7.940000e-41 180.0
84 TraesCS7D01G249500 chr1B 95.122 123 6 0 5281 5403 332136282 332136160 2.840000e-45 195.0
85 TraesCS7D01G249500 chr1B 91.538 130 10 1 5280 5409 325262089 325262217 2.860000e-40 178.0
86 TraesCS7D01G249500 chr1B 88.028 142 14 3 5285 5425 503869457 503869596 2.220000e-36 165.0
87 TraesCS7D01G249500 chr6B 94.118 119 7 0 5287 5405 36133757 36133875 2.210000e-41 182.0
88 TraesCS7D01G249500 chr6B 94.118 119 7 0 5286 5404 500227343 500227461 2.210000e-41 182.0
89 TraesCS7D01G249500 chr6B 96.610 59 1 1 6188 6246 173797136 173797193 8.230000e-16 97.1
90 TraesCS7D01G249500 chr4B 90.511 137 11 2 5268 5403 486280086 486279951 7.940000e-41 180.0
91 TraesCS7D01G249500 chr4B 92.683 123 7 2 5286 5407 669371217 669371338 1.030000e-39 176.0
92 TraesCS7D01G249500 chr4B 96.667 60 1 1 6182 6240 246455362 246455421 2.290000e-16 99.0
93 TraesCS7D01G249500 chr4B 95.082 61 1 2 6181 6240 115550287 115550346 2.960000e-15 95.3
94 TraesCS7D01G249500 chr2A 91.045 134 10 2 5275 5407 389220939 389220807 7.940000e-41 180.0
95 TraesCS7D01G249500 chrUn 92.683 123 8 1 5287 5409 87827509 87827388 1.030000e-39 176.0
96 TraesCS7D01G249500 chrUn 92.683 123 8 1 5287 5409 309972554 309972433 1.030000e-39 176.0
97 TraesCS7D01G249500 chrUn 92.373 118 9 0 5286 5403 100620880 100620763 1.720000e-37 169.0
98 TraesCS7D01G249500 chrUn 91.453 117 10 0 5287 5403 70385232 70385116 2.880000e-35 161.0
99 TraesCS7D01G249500 chrUn 91.453 117 10 0 5287 5403 455532624 455532508 2.880000e-35 161.0
100 TraesCS7D01G249500 chrUn 90.083 121 12 0 5284 5404 284430854 284430974 3.720000e-34 158.0
101 TraesCS7D01G249500 chrUn 90.598 117 9 2 5288 5403 48888596 48888711 4.810000e-33 154.0
102 TraesCS7D01G249500 chrUn 90.517 116 11 0 5288 5403 144753829 144753714 4.810000e-33 154.0
103 TraesCS7D01G249500 chrUn 88.189 127 11 4 5289 5413 325434762 325434886 2.240000e-31 148.0
104 TraesCS7D01G249500 chrUn 88.189 127 11 4 5289 5413 364912209 364912333 2.240000e-31 148.0
105 TraesCS7D01G249500 chrUn 98.148 54 0 1 6182 6234 320245638 320245691 1.060000e-14 93.5
106 TraesCS7D01G249500 chrUn 100.000 49 0 0 6188 6236 305213177 305213129 3.830000e-14 91.6
107 TraesCS7D01G249500 chrUn 100.000 48 0 0 6188 6235 35713296 35713343 1.380000e-13 89.8
108 TraesCS7D01G249500 chrUn 100.000 48 0 0 6188 6235 37289210 37289163 1.380000e-13 89.8
109 TraesCS7D01G249500 chrUn 100.000 48 0 0 6188 6235 37292386 37292339 1.380000e-13 89.8
110 TraesCS7D01G249500 chrUn 96.296 54 1 1 6182 6234 21367803 21367750 4.950000e-13 87.9
111 TraesCS7D01G249500 chrUn 96.226 53 2 0 6189 6241 56557290 56557342 4.950000e-13 87.9
112 TraesCS7D01G249500 chrUn 96.226 53 2 0 6188 6240 65676713 65676765 4.950000e-13 87.9
113 TraesCS7D01G249500 chrUn 94.643 56 3 0 6188 6243 279936260 279936205 4.950000e-13 87.9
114 TraesCS7D01G249500 chrUn 94.643 56 3 0 6188 6243 395541647 395541592 4.950000e-13 87.9
115 TraesCS7D01G249500 chrUn 96.226 53 1 1 6181 6233 195604947 195604896 1.780000e-12 86.1
116 TraesCS7D01G249500 chrUn 90.625 64 3 2 6170 6233 72068760 72068700 2.300000e-11 82.4
117 TraesCS7D01G249500 chr1A 93.750 64 2 1 6170 6233 208382479 208382540 2.960000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G249500 chr7D 220969552 220979500 9948 False 4696.000000 12261 99.400000 1 9949 4 chr7D.!!$F3 9948
1 TraesCS7D01G249500 chr7B 175998756 176007671 8915 True 2487.833333 5589 96.187667 541 9949 6 chr7B.!!$R2 9408
2 TraesCS7D01G249500 chr7A 235459673 235469208 9535 False 1424.970000 3546 94.792800 166 9949 10 chr7A.!!$F1 9783

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
106 107 0.030101 CGACAAAACCACAATGCGGT 59.970 50.000 0.00 0.00 38.85 5.68 F
436 438 0.170784 GAGGAAGACCGGAACTCGTC 59.829 60.000 9.46 8.35 41.83 4.20 F
1496 1733 0.115745 TAGGGTGACGGAGGAGGTTT 59.884 55.000 0.00 0.00 0.00 3.27 F
1625 1862 0.464036 CTGCGGGCACTACCTTGATA 59.536 55.000 0.00 0.00 39.10 2.15 F
1774 2011 1.119574 TAAGCCGAGGGGAGTATGGC 61.120 60.000 0.00 0.00 46.07 4.40 F
2777 3018 1.192428 GACTATTCGTCACCCTGGGT 58.808 55.000 14.05 14.05 42.37 4.51 F
2788 3029 2.361085 ACCCTGGGTGAGGAATAGTT 57.639 50.000 19.82 0.00 46.33 2.24 F
3884 4125 2.672874 TGATGCGAAGACATGTTACTGC 59.327 45.455 0.00 3.42 0.00 4.40 F
5599 6335 0.468400 AGGGTGCGGCAAAGGTTTTA 60.468 50.000 3.23 0.00 0.00 1.52 F
7332 8341 0.609131 AAGGCATCACCCTTGTTCCG 60.609 55.000 0.00 0.00 43.43 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1496 1733 0.178846 TTCATCAGGGGGTCAAGGGA 60.179 55.000 0.00 0.00 0.00 4.20 R
1625 1862 2.577606 TCCACCACGACATTGGAAAT 57.422 45.000 0.00 0.00 39.24 2.17 R
2769 3010 2.361085 AACTATTCCTCACCCAGGGT 57.639 50.000 4.76 4.76 43.67 4.34 R
3339 3580 2.567169 TCATTAGCAGCAGCCGGTATAT 59.433 45.455 1.90 0.00 43.56 0.86 R
3668 3909 5.732331 TCCCCAAAAGTTCATCCTGATAT 57.268 39.130 0.00 0.00 0.00 1.63 R
4268 4645 3.161866 TGCTGACCAAAAGATTTACCCC 58.838 45.455 0.00 0.00 0.00 4.95 R
4431 4817 4.620589 AAACCATCAACATGCATTTCCA 57.379 36.364 0.00 0.00 0.00 3.53 R
5724 6544 0.179176 TGCGCAACAGTGTTGTCAAC 60.179 50.000 31.12 20.08 36.23 3.18 R
7592 8601 1.042559 CATGGTATGTGCCCAACCCC 61.043 60.000 0.00 0.00 35.14 4.95 R
9254 10268 0.038343 GCAGATCGAGCTGGAGATCC 60.038 60.000 30.05 10.17 43.03 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.995466 ATTGTGTGAAGTGGCGATTG 57.005 45.000 0.00 0.00 0.00 2.67
22 23 1.674359 TTGTGTGAAGTGGCGATTGT 58.326 45.000 0.00 0.00 0.00 2.71
23 24 2.535012 TGTGTGAAGTGGCGATTGTA 57.465 45.000 0.00 0.00 0.00 2.41
24 25 2.839975 TGTGTGAAGTGGCGATTGTAA 58.160 42.857 0.00 0.00 0.00 2.41
25 26 2.805671 TGTGTGAAGTGGCGATTGTAAG 59.194 45.455 0.00 0.00 0.00 2.34
26 27 1.804151 TGTGAAGTGGCGATTGTAAGC 59.196 47.619 0.00 0.00 0.00 3.09
35 36 1.324736 GCGATTGTAAGCCAACTCTCG 59.675 52.381 0.00 0.00 35.44 4.04
36 37 2.607187 CGATTGTAAGCCAACTCTCGT 58.393 47.619 0.00 0.00 35.44 4.18
37 38 2.993899 CGATTGTAAGCCAACTCTCGTT 59.006 45.455 0.00 0.00 35.44 3.85
38 39 4.171005 CGATTGTAAGCCAACTCTCGTTA 58.829 43.478 0.00 0.00 35.44 3.18
39 40 4.804139 CGATTGTAAGCCAACTCTCGTTAT 59.196 41.667 0.00 0.00 35.44 1.89
40 41 5.051641 CGATTGTAAGCCAACTCTCGTTATC 60.052 44.000 0.00 0.00 35.44 1.75
41 42 4.119442 TGTAAGCCAACTCTCGTTATCC 57.881 45.455 0.00 0.00 0.00 2.59
42 43 2.693267 AAGCCAACTCTCGTTATCCC 57.307 50.000 0.00 0.00 0.00 3.85
43 44 1.568504 AGCCAACTCTCGTTATCCCA 58.431 50.000 0.00 0.00 0.00 4.37
44 45 2.119495 AGCCAACTCTCGTTATCCCAT 58.881 47.619 0.00 0.00 0.00 4.00
45 46 2.505819 AGCCAACTCTCGTTATCCCATT 59.494 45.455 0.00 0.00 0.00 3.16
46 47 2.872858 GCCAACTCTCGTTATCCCATTC 59.127 50.000 0.00 0.00 0.00 2.67
47 48 3.432326 GCCAACTCTCGTTATCCCATTCT 60.432 47.826 0.00 0.00 0.00 2.40
48 49 4.770795 CCAACTCTCGTTATCCCATTCTT 58.229 43.478 0.00 0.00 0.00 2.52
49 50 4.572389 CCAACTCTCGTTATCCCATTCTTG 59.428 45.833 0.00 0.00 0.00 3.02
50 51 5.178797 CAACTCTCGTTATCCCATTCTTGT 58.821 41.667 0.00 0.00 0.00 3.16
51 52 5.422214 ACTCTCGTTATCCCATTCTTGTT 57.578 39.130 0.00 0.00 0.00 2.83
52 53 5.420409 ACTCTCGTTATCCCATTCTTGTTC 58.580 41.667 0.00 0.00 0.00 3.18
53 54 5.046591 ACTCTCGTTATCCCATTCTTGTTCA 60.047 40.000 0.00 0.00 0.00 3.18
54 55 5.989477 TCTCGTTATCCCATTCTTGTTCAT 58.011 37.500 0.00 0.00 0.00 2.57
55 56 6.414732 TCTCGTTATCCCATTCTTGTTCATT 58.585 36.000 0.00 0.00 0.00 2.57
56 57 7.561251 TCTCGTTATCCCATTCTTGTTCATTA 58.439 34.615 0.00 0.00 0.00 1.90
57 58 7.494625 TCTCGTTATCCCATTCTTGTTCATTAC 59.505 37.037 0.00 0.00 0.00 1.89
58 59 7.106890 TCGTTATCCCATTCTTGTTCATTACA 58.893 34.615 0.00 0.00 34.12 2.41
59 60 7.773224 TCGTTATCCCATTCTTGTTCATTACAT 59.227 33.333 0.00 0.00 36.44 2.29
60 61 7.857389 CGTTATCCCATTCTTGTTCATTACATG 59.143 37.037 0.00 0.00 36.44 3.21
61 62 6.720112 ATCCCATTCTTGTTCATTACATGG 57.280 37.500 0.00 0.00 36.44 3.66
62 63 5.266733 CCCATTCTTGTTCATTACATGGG 57.733 43.478 0.00 0.00 43.44 4.00
64 65 6.720112 CCATTCTTGTTCATTACATGGGAT 57.280 37.500 0.00 0.00 36.44 3.85
65 66 7.116075 CCATTCTTGTTCATTACATGGGATT 57.884 36.000 0.00 0.00 36.44 3.01
66 67 6.982141 CCATTCTTGTTCATTACATGGGATTG 59.018 38.462 0.00 0.00 36.44 2.67
67 68 7.364056 CCATTCTTGTTCATTACATGGGATTGT 60.364 37.037 0.00 0.00 36.44 2.71
68 69 6.513806 TCTTGTTCATTACATGGGATTGTG 57.486 37.500 0.00 0.00 36.44 3.33
69 70 6.009589 TCTTGTTCATTACATGGGATTGTGT 58.990 36.000 0.00 0.00 36.44 3.72
70 71 5.641783 TGTTCATTACATGGGATTGTGTG 57.358 39.130 0.00 0.00 0.00 3.82
71 72 5.320277 TGTTCATTACATGGGATTGTGTGA 58.680 37.500 0.00 0.00 0.00 3.58
72 73 5.772169 TGTTCATTACATGGGATTGTGTGAA 59.228 36.000 0.00 0.00 35.28 3.18
73 74 6.072008 TGTTCATTACATGGGATTGTGTGAAG 60.072 38.462 0.00 0.00 36.80 3.02
74 75 5.814481 TCATTACATGGGATTGTGTGAAGA 58.186 37.500 0.00 0.00 0.00 2.87
75 76 6.425735 TCATTACATGGGATTGTGTGAAGAT 58.574 36.000 0.00 0.00 0.00 2.40
76 77 6.319405 TCATTACATGGGATTGTGTGAAGATG 59.681 38.462 0.00 0.00 0.00 2.90
77 78 4.305539 ACATGGGATTGTGTGAAGATGA 57.694 40.909 0.00 0.00 0.00 2.92
78 79 4.012374 ACATGGGATTGTGTGAAGATGAC 58.988 43.478 0.00 0.00 0.00 3.06
79 80 3.071874 TGGGATTGTGTGAAGATGACC 57.928 47.619 0.00 0.00 0.00 4.02
80 81 2.290896 TGGGATTGTGTGAAGATGACCC 60.291 50.000 0.00 0.00 35.82 4.46
81 82 2.025887 GGGATTGTGTGAAGATGACCCT 60.026 50.000 0.00 0.00 32.93 4.34
82 83 3.562176 GGGATTGTGTGAAGATGACCCTT 60.562 47.826 0.00 0.00 32.93 3.95
83 84 3.691609 GGATTGTGTGAAGATGACCCTTC 59.308 47.826 0.00 0.00 42.09 3.46
84 85 4.566488 GGATTGTGTGAAGATGACCCTTCT 60.566 45.833 0.00 0.00 42.20 2.85
85 86 4.437682 TTGTGTGAAGATGACCCTTCTT 57.562 40.909 0.00 0.00 42.20 2.52
86 87 3.743521 TGTGTGAAGATGACCCTTCTTG 58.256 45.455 0.00 0.00 42.20 3.02
87 88 2.485814 GTGTGAAGATGACCCTTCTTGC 59.514 50.000 0.00 0.00 42.20 4.01
88 89 1.734465 GTGAAGATGACCCTTCTTGCG 59.266 52.381 0.00 0.00 42.20 4.85
89 90 1.623311 TGAAGATGACCCTTCTTGCGA 59.377 47.619 0.00 0.00 42.20 5.10
90 91 2.003301 GAAGATGACCCTTCTTGCGAC 58.997 52.381 0.00 0.00 39.44 5.19
91 92 0.976641 AGATGACCCTTCTTGCGACA 59.023 50.000 0.00 0.00 0.00 4.35
92 93 1.347707 AGATGACCCTTCTTGCGACAA 59.652 47.619 0.00 0.00 0.00 3.18
93 94 2.151202 GATGACCCTTCTTGCGACAAA 58.849 47.619 0.00 0.00 0.00 2.83
94 95 2.045561 TGACCCTTCTTGCGACAAAA 57.954 45.000 0.00 0.00 0.00 2.44
95 96 1.673920 TGACCCTTCTTGCGACAAAAC 59.326 47.619 0.00 0.00 0.00 2.43
96 97 1.001706 GACCCTTCTTGCGACAAAACC 60.002 52.381 0.00 0.00 0.00 3.27
97 98 1.028905 CCCTTCTTGCGACAAAACCA 58.971 50.000 0.00 0.00 0.00 3.67
98 99 1.269051 CCCTTCTTGCGACAAAACCAC 60.269 52.381 0.00 0.00 0.00 4.16
99 100 1.403679 CCTTCTTGCGACAAAACCACA 59.596 47.619 0.00 0.00 0.00 4.17
100 101 2.159310 CCTTCTTGCGACAAAACCACAA 60.159 45.455 0.00 0.00 0.00 3.33
101 102 3.490761 CCTTCTTGCGACAAAACCACAAT 60.491 43.478 0.00 0.00 0.00 2.71
102 103 3.077229 TCTTGCGACAAAACCACAATG 57.923 42.857 0.00 0.00 0.00 2.82
103 104 1.522258 CTTGCGACAAAACCACAATGC 59.478 47.619 0.00 0.00 0.00 3.56
104 105 0.593518 TGCGACAAAACCACAATGCG 60.594 50.000 0.00 0.00 0.00 4.73
105 106 1.274798 GCGACAAAACCACAATGCGG 61.275 55.000 0.00 0.00 0.00 5.69
106 107 0.030101 CGACAAAACCACAATGCGGT 59.970 50.000 0.00 0.00 38.85 5.68
108 109 2.287069 CGACAAAACCACAATGCGGTTA 60.287 45.455 6.07 0.00 46.12 2.85
109 110 3.610585 CGACAAAACCACAATGCGGTTAT 60.611 43.478 6.07 0.00 46.12 1.89
110 111 3.648009 ACAAAACCACAATGCGGTTATG 58.352 40.909 6.07 0.00 46.12 1.90
111 112 2.362169 AAACCACAATGCGGTTATGC 57.638 45.000 6.07 0.00 46.12 3.14
112 113 0.530288 AACCACAATGCGGTTATGCC 59.470 50.000 3.53 0.00 45.00 4.40
113 114 0.323360 ACCACAATGCGGTTATGCCT 60.323 50.000 0.00 0.00 30.53 4.75
114 115 0.381801 CCACAATGCGGTTATGCCTC 59.618 55.000 0.00 0.00 34.25 4.70
115 116 1.382522 CACAATGCGGTTATGCCTCT 58.617 50.000 0.00 0.00 34.25 3.69
116 117 2.560504 CACAATGCGGTTATGCCTCTA 58.439 47.619 0.00 0.00 34.25 2.43
117 118 2.942376 CACAATGCGGTTATGCCTCTAA 59.058 45.455 0.00 0.00 34.25 2.10
118 119 3.002656 CACAATGCGGTTATGCCTCTAAG 59.997 47.826 0.00 0.00 34.25 2.18
119 120 3.206150 CAATGCGGTTATGCCTCTAAGT 58.794 45.455 0.00 0.00 34.25 2.24
120 121 2.596904 TGCGGTTATGCCTCTAAGTC 57.403 50.000 0.00 0.00 34.25 3.01
121 122 1.202371 TGCGGTTATGCCTCTAAGTCG 60.202 52.381 0.00 0.00 34.25 4.18
122 123 1.202382 GCGGTTATGCCTCTAAGTCGT 60.202 52.381 0.00 0.00 34.25 4.34
123 124 2.460918 CGGTTATGCCTCTAAGTCGTG 58.539 52.381 0.00 0.00 34.25 4.35
124 125 2.202566 GGTTATGCCTCTAAGTCGTGC 58.797 52.381 0.00 0.00 0.00 5.34
125 126 2.202566 GTTATGCCTCTAAGTCGTGCC 58.797 52.381 0.00 0.00 0.00 5.01
126 127 1.776662 TATGCCTCTAAGTCGTGCCT 58.223 50.000 0.00 0.00 0.00 4.75
127 128 0.461961 ATGCCTCTAAGTCGTGCCTC 59.538 55.000 0.00 0.00 0.00 4.70
128 129 1.226717 GCCTCTAAGTCGTGCCTCG 60.227 63.158 0.00 0.00 41.41 4.63
129 130 1.654954 GCCTCTAAGTCGTGCCTCGA 61.655 60.000 0.00 0.00 46.83 4.04
138 139 3.986006 GTGCCTCGACACGTGGGA 61.986 66.667 21.57 15.34 40.31 4.37
139 140 3.680786 TGCCTCGACACGTGGGAG 61.681 66.667 24.04 24.04 40.31 4.30
140 141 3.371063 GCCTCGACACGTGGGAGA 61.371 66.667 29.41 19.95 40.31 3.71
141 142 2.711922 GCCTCGACACGTGGGAGAT 61.712 63.158 29.41 7.79 40.31 2.75
142 143 1.381928 GCCTCGACACGTGGGAGATA 61.382 60.000 29.41 7.54 40.31 1.98
143 144 1.319541 CCTCGACACGTGGGAGATAT 58.680 55.000 29.41 6.39 36.95 1.63
144 145 2.501261 CCTCGACACGTGGGAGATATA 58.499 52.381 29.41 5.30 36.95 0.86
145 146 2.484651 CCTCGACACGTGGGAGATATAG 59.515 54.545 29.41 15.13 36.95 1.31
146 147 1.878088 TCGACACGTGGGAGATATAGC 59.122 52.381 21.57 0.00 0.00 2.97
147 148 1.068472 CGACACGTGGGAGATATAGCC 60.068 57.143 21.57 0.00 0.00 3.93
148 149 0.959553 ACACGTGGGAGATATAGCCG 59.040 55.000 21.57 0.00 0.00 5.52
149 150 0.388649 CACGTGGGAGATATAGCCGC 60.389 60.000 7.95 0.00 0.00 6.53
150 151 0.826256 ACGTGGGAGATATAGCCGCA 60.826 55.000 0.00 0.00 0.00 5.69
151 152 0.532573 CGTGGGAGATATAGCCGCAT 59.467 55.000 0.00 0.00 0.00 4.73
152 153 1.469940 CGTGGGAGATATAGCCGCATC 60.470 57.143 0.00 0.00 0.00 3.91
153 154 0.817654 TGGGAGATATAGCCGCATCG 59.182 55.000 0.00 0.00 0.00 3.84
154 155 0.818296 GGGAGATATAGCCGCATCGT 59.182 55.000 0.00 0.00 0.00 3.73
155 156 1.469940 GGGAGATATAGCCGCATCGTG 60.470 57.143 0.00 0.00 0.00 4.35
156 157 1.469940 GGAGATATAGCCGCATCGTGG 60.470 57.143 0.00 0.00 36.10 4.94
157 158 0.532573 AGATATAGCCGCATCGTGGG 59.467 55.000 0.00 0.00 33.18 4.61
229 231 1.750018 CCAATCGCAGCCACCATGA 60.750 57.895 0.00 0.00 0.00 3.07
242 244 2.554032 CCACCATGACTTTCTTCACCAC 59.446 50.000 0.00 0.00 0.00 4.16
260 262 3.579586 ACCACTGTCAATGCCATGAAAAT 59.420 39.130 0.00 0.00 0.00 1.82
287 289 3.281158 TGTAGACATGTCCCATTGCATG 58.719 45.455 22.21 0.00 45.61 4.06
347 349 0.541998 TCTCTGGCCGAAGACAAGGA 60.542 55.000 0.00 0.00 0.00 3.36
380 382 7.467539 CGACCGGATCAATTCCTATCTAGATAC 60.468 44.444 9.46 0.00 42.99 2.24
382 384 6.836527 CCGGATCAATTCCTATCTAGATACCT 59.163 42.308 8.44 0.00 42.99 3.08
384 386 9.062524 CGGATCAATTCCTATCTAGATACCTAG 57.937 40.741 8.44 0.94 42.99 3.02
432 434 2.569183 CGAGAGGAAGACCGGAACT 58.431 57.895 9.46 3.91 41.83 3.01
433 435 0.452585 CGAGAGGAAGACCGGAACTC 59.547 60.000 9.46 7.97 41.83 3.01
434 436 0.452585 GAGAGGAAGACCGGAACTCG 59.547 60.000 9.46 0.00 41.83 4.18
435 437 0.251253 AGAGGAAGACCGGAACTCGT 60.251 55.000 9.46 2.01 41.83 4.18
436 438 0.170784 GAGGAAGACCGGAACTCGTC 59.829 60.000 9.46 8.35 41.83 4.20
437 439 1.154073 GGAAGACCGGAACTCGTCG 60.154 63.158 9.46 0.00 37.11 5.12
459 461 2.165301 GTCGGCGTCCAAATCGAGG 61.165 63.158 6.85 0.00 32.09 4.63
470 472 2.947938 AAATCGAGGAGGCCGGCATG 62.948 60.000 30.85 9.64 0.00 4.06
491 493 1.126488 AGCACATCGAGGATGGTGAT 58.874 50.000 3.06 0.00 43.60 3.06
500 502 3.935993 GGATGGTGATCCCCATACG 57.064 57.895 9.96 0.00 45.31 3.06
544 546 2.363680 CTCACACCGAGATTAGGATGCT 59.636 50.000 0.00 0.00 45.45 3.79
550 552 5.585047 ACACCGAGATTAGGATGCTTAAAAC 59.415 40.000 0.00 0.00 0.00 2.43
551 553 4.809426 ACCGAGATTAGGATGCTTAAAACG 59.191 41.667 0.00 0.00 0.00 3.60
596 598 1.554617 TGCATCATCCGTTGGAGAGAA 59.445 47.619 0.00 0.00 34.05 2.87
647 871 6.284459 GTTCTACCTATGGGATCTTGTTCTG 58.716 44.000 0.25 0.00 36.25 3.02
703 927 2.194056 CCCACCCCATGCTAGCAG 59.806 66.667 23.89 14.42 0.00 4.24
1190 1427 2.127869 CGAAGGCCGAGGATGAGGA 61.128 63.158 0.00 0.00 41.76 3.71
1191 1428 1.443828 GAAGGCCGAGGATGAGGAC 59.556 63.158 0.00 0.00 35.21 3.85
1192 1429 2.356818 GAAGGCCGAGGATGAGGACG 62.357 65.000 0.00 0.00 41.45 4.79
1193 1430 2.833582 GGCCGAGGATGAGGACGA 60.834 66.667 0.00 0.00 0.00 4.20
1194 1431 2.413765 GCCGAGGATGAGGACGAC 59.586 66.667 0.00 0.00 0.00 4.34
1197 1434 1.352404 CGAGGATGAGGACGACGAC 59.648 63.158 0.00 0.00 0.00 4.34
1203 1440 1.090625 ATGAGGACGACGACGAGGAG 61.091 60.000 15.32 0.00 42.66 3.69
1207 1444 2.436292 ACGACGACGAGGAGGAGG 60.436 66.667 15.32 0.00 42.66 4.30
1496 1733 0.115745 TAGGGTGACGGAGGAGGTTT 59.884 55.000 0.00 0.00 0.00 3.27
1546 1783 1.896220 ACGTGTGGCATGTCTTCATT 58.104 45.000 0.00 0.00 31.15 2.57
1625 1862 0.464036 CTGCGGGCACTACCTTGATA 59.536 55.000 0.00 0.00 39.10 2.15
1668 1905 7.093112 GGATCCTTATGCTAAGGTGATCATACT 60.093 40.741 3.84 0.00 38.55 2.12
1713 1950 9.709495 TGGTATTTACAGTAGAAATTGTTACGT 57.291 29.630 0.00 0.00 0.00 3.57
1718 1955 4.992951 ACAGTAGAAATTGTTACGTGGACC 59.007 41.667 0.00 0.00 0.00 4.46
1727 1964 4.354893 TGTTACGTGGACCCTTATTTGT 57.645 40.909 0.00 0.00 0.00 2.83
1774 2011 1.119574 TAAGCCGAGGGGAGTATGGC 61.120 60.000 0.00 0.00 46.07 4.40
1864 2101 6.515531 CGGTATGCCTGATTGCTGAAAATATT 60.516 38.462 0.00 0.00 0.00 1.28
1993 2230 2.565841 AGTTGTCTGCTGACTTTGACC 58.434 47.619 22.31 6.16 43.29 4.02
2099 2338 7.816945 AATTGCATCTAGTATTTGTTGTTGC 57.183 32.000 0.00 0.00 0.00 4.17
2308 2547 4.938226 AGCTTGACTATTTGAAGGTACAGC 59.062 41.667 0.00 0.00 0.00 4.40
2626 2867 4.232091 ACCTCTTCTTCCAAGTAAGGACA 58.768 43.478 9.77 0.00 37.42 4.02
2775 3016 6.591750 AATATAGACTATTCGTCACCCTGG 57.408 41.667 0.00 0.00 45.32 4.45
2776 3017 1.486211 AGACTATTCGTCACCCTGGG 58.514 55.000 12.28 12.28 45.32 4.45
2777 3018 1.192428 GACTATTCGTCACCCTGGGT 58.808 55.000 14.05 14.05 42.37 4.51
2788 3029 2.361085 ACCCTGGGTGAGGAATAGTT 57.639 50.000 19.82 0.00 46.33 2.24
2789 3030 3.502051 ACCCTGGGTGAGGAATAGTTA 57.498 47.619 19.82 0.00 46.33 2.24
2790 3031 4.022359 ACCCTGGGTGAGGAATAGTTAT 57.978 45.455 19.82 0.00 46.33 1.89
2791 3032 4.380791 ACCCTGGGTGAGGAATAGTTATT 58.619 43.478 19.82 0.00 46.33 1.40
2792 3033 4.412528 ACCCTGGGTGAGGAATAGTTATTC 59.587 45.833 19.82 3.75 46.33 1.75
2793 3034 4.660771 CCCTGGGTGAGGAATAGTTATTCT 59.339 45.833 3.97 0.00 46.33 2.40
2794 3035 5.132816 CCCTGGGTGAGGAATAGTTATTCTT 59.867 44.000 3.97 4.41 46.33 2.52
2795 3036 6.292150 CCTGGGTGAGGAATAGTTATTCTTC 58.708 44.000 13.90 13.90 46.33 2.87
2800 3041 6.884472 TGAGGAATAGTTATTCTTCACCCA 57.116 37.500 17.60 2.39 46.85 4.51
2801 3042 6.650120 TGAGGAATAGTTATTCTTCACCCAC 58.350 40.000 17.60 1.16 46.85 4.61
2802 3043 6.002653 AGGAATAGTTATTCTTCACCCACC 57.997 41.667 10.71 0.00 41.33 4.61
2803 3044 5.731678 AGGAATAGTTATTCTTCACCCACCT 59.268 40.000 10.71 0.00 41.33 4.00
2804 3045 6.056236 GGAATAGTTATTCTTCACCCACCTC 58.944 44.000 10.71 0.00 41.33 3.85
2805 3046 6.126739 GGAATAGTTATTCTTCACCCACCTCT 60.127 42.308 10.71 0.00 41.33 3.69
2806 3047 7.070821 GGAATAGTTATTCTTCACCCACCTCTA 59.929 40.741 10.71 0.00 41.33 2.43
2807 3048 8.568617 AATAGTTATTCTTCACCCACCTCTAT 57.431 34.615 0.00 0.00 0.00 1.98
2808 3049 6.893020 AGTTATTCTTCACCCACCTCTATT 57.107 37.500 0.00 0.00 0.00 1.73
2809 3050 7.272144 AGTTATTCTTCACCCACCTCTATTT 57.728 36.000 0.00 0.00 0.00 1.40
2810 3051 7.699878 AGTTATTCTTCACCCACCTCTATTTT 58.300 34.615 0.00 0.00 0.00 1.82
2811 3052 8.832735 AGTTATTCTTCACCCACCTCTATTTTA 58.167 33.333 0.00 0.00 0.00 1.52
2812 3053 9.457436 GTTATTCTTCACCCACCTCTATTTTAA 57.543 33.333 0.00 0.00 0.00 1.52
2813 3054 7.939784 ATTCTTCACCCACCTCTATTTTAAC 57.060 36.000 0.00 0.00 0.00 2.01
2814 3055 6.442541 TCTTCACCCACCTCTATTTTAACA 57.557 37.500 0.00 0.00 0.00 2.41
2815 3056 7.027874 TCTTCACCCACCTCTATTTTAACAT 57.972 36.000 0.00 0.00 0.00 2.71
2816 3057 7.110155 TCTTCACCCACCTCTATTTTAACATC 58.890 38.462 0.00 0.00 0.00 3.06
2817 3058 6.636454 TCACCCACCTCTATTTTAACATCT 57.364 37.500 0.00 0.00 0.00 2.90
2818 3059 7.743116 TCACCCACCTCTATTTTAACATCTA 57.257 36.000 0.00 0.00 0.00 1.98
2819 3060 8.331931 TCACCCACCTCTATTTTAACATCTAT 57.668 34.615 0.00 0.00 0.00 1.98
2820 3061 8.210946 TCACCCACCTCTATTTTAACATCTATG 58.789 37.037 0.00 0.00 0.00 2.23
2821 3062 6.998673 ACCCACCTCTATTTTAACATCTATGC 59.001 38.462 0.00 0.00 0.00 3.14
2822 3063 6.998074 CCCACCTCTATTTTAACATCTATGCA 59.002 38.462 0.00 0.00 0.00 3.96
2823 3064 7.041098 CCCACCTCTATTTTAACATCTATGCAC 60.041 40.741 0.00 0.00 0.00 4.57
2824 3065 7.041098 CCACCTCTATTTTAACATCTATGCACC 60.041 40.741 0.00 0.00 0.00 5.01
2825 3066 6.706270 ACCTCTATTTTAACATCTATGCACCG 59.294 38.462 0.00 0.00 0.00 4.94
2826 3067 6.706270 CCTCTATTTTAACATCTATGCACCGT 59.294 38.462 0.00 0.00 0.00 4.83
2827 3068 7.870954 CCTCTATTTTAACATCTATGCACCGTA 59.129 37.037 0.00 0.00 0.00 4.02
2828 3069 9.256477 CTCTATTTTAACATCTATGCACCGTAA 57.744 33.333 0.00 0.00 0.00 3.18
2829 3070 9.772973 TCTATTTTAACATCTATGCACCGTAAT 57.227 29.630 0.00 0.00 0.00 1.89
2834 3075 9.991388 TTTAACATCTATGCACCGTAATTTTAC 57.009 29.630 0.00 0.00 0.00 2.01
2886 3127 9.808808 GAGATAAAAAGAGAACGTAAGAAAACC 57.191 33.333 0.00 0.00 43.62 3.27
2887 3128 9.557061 AGATAAAAAGAGAACGTAAGAAAACCT 57.443 29.630 0.00 0.00 43.62 3.50
2894 3135 8.853469 AGAGAACGTAAGAAAACCTATAATCG 57.147 34.615 0.00 0.00 43.62 3.34
2895 3136 8.465201 AGAGAACGTAAGAAAACCTATAATCGT 58.535 33.333 0.00 0.00 43.62 3.73
2896 3137 8.626093 AGAACGTAAGAAAACCTATAATCGTC 57.374 34.615 0.00 0.00 43.62 4.20
2897 3138 7.430502 AGAACGTAAGAAAACCTATAATCGTCG 59.569 37.037 0.00 0.00 43.62 5.12
2898 3139 6.555315 ACGTAAGAAAACCTATAATCGTCGT 58.445 36.000 0.00 0.00 43.62 4.34
2899 3140 7.693952 ACGTAAGAAAACCTATAATCGTCGTA 58.306 34.615 0.00 0.00 43.62 3.43
2900 3141 8.181573 ACGTAAGAAAACCTATAATCGTCGTAA 58.818 33.333 0.00 0.00 43.62 3.18
2901 3142 9.009327 CGTAAGAAAACCTATAATCGTCGTAAA 57.991 33.333 0.00 0.00 43.02 2.01
3388 3629 6.604735 AATATTTCGCAAGTACCTAAGCTG 57.395 37.500 0.00 0.00 39.48 4.24
3433 3674 7.453980 CAATCCATAATTGAAATTGGTCACG 57.546 36.000 0.00 0.00 46.54 4.35
3632 3873 8.897752 GCTATATTTCTCTTTGGAAACATGACT 58.102 33.333 0.00 0.00 42.32 3.41
3668 3909 7.221067 CCGTTTTGTATAAACTGCTTGTTTTCA 59.779 33.333 12.18 8.09 45.69 2.69
3884 4125 2.672874 TGATGCGAAGACATGTTACTGC 59.327 45.455 0.00 3.42 0.00 4.40
3888 4129 3.192633 TGCGAAGACATGTTACTGCTAGA 59.807 43.478 0.00 0.00 0.00 2.43
4268 4645 7.707464 TGATATGATTAATTTGCAAGCTTGTGG 59.293 33.333 26.55 2.93 0.00 4.17
4431 4817 4.032960 TGTTTTGCAGATACTGGGTGAT 57.967 40.909 0.00 0.00 31.21 3.06
5012 5400 2.576191 TGAGTGGAATGGGAAGGTAAGG 59.424 50.000 0.00 0.00 0.00 2.69
5031 5419 8.224389 GGTAAGGTACCTGTTAAAAGTTTGAA 57.776 34.615 17.14 0.00 45.52 2.69
5187 5599 7.228314 TGTGCTGAATAGTGAAGTACTACTT 57.772 36.000 3.68 0.76 44.30 2.24
5307 5722 2.395619 ACTCCCTCCGTCCGAAATTAT 58.604 47.619 0.00 0.00 0.00 1.28
5454 5877 6.779860 AGTAAATCCCCACGAATAAGCATAT 58.220 36.000 0.00 0.00 0.00 1.78
5479 5902 6.560253 AGACGATATTGCTTTTTGACTTGT 57.440 33.333 0.00 0.00 0.00 3.16
5522 6257 4.569719 TCTCCTAGGATTTTGGGTGTTC 57.430 45.455 13.12 0.00 0.00 3.18
5557 6293 9.520204 CAGCTGGTGATATTTAATTTACCTTTG 57.480 33.333 5.57 0.00 0.00 2.77
5599 6335 0.468400 AGGGTGCGGCAAAGGTTTTA 60.468 50.000 3.23 0.00 0.00 1.52
5610 6346 5.390567 CGGCAAAGGTTTTAGCTTAGTAGTG 60.391 44.000 0.00 0.00 34.42 2.74
5678 6498 2.662866 TCCGTACTGGTCCCATAGAAG 58.337 52.381 4.11 0.00 39.52 2.85
5681 6501 4.105217 TCCGTACTGGTCCCATAGAAGATA 59.895 45.833 4.11 0.00 39.52 1.98
5682 6502 4.831155 CCGTACTGGTCCCATAGAAGATAA 59.169 45.833 0.00 0.00 0.00 1.75
5683 6503 5.303589 CCGTACTGGTCCCATAGAAGATAAA 59.696 44.000 0.00 0.00 0.00 1.40
5724 6544 2.428171 CTGGGTGTCTGGCCAATAATTG 59.572 50.000 7.01 0.00 0.00 2.32
5748 6568 1.133982 ACAACACTGTTGCGCATTTGA 59.866 42.857 19.86 0.00 28.57 2.69
5848 6828 8.378565 TGGATCTTTAAGAGGGAACATATGATC 58.621 37.037 10.38 7.12 0.00 2.92
5874 6854 5.334802 CGTGTGCATCCATCTTCAACTAAAA 60.335 40.000 0.00 0.00 0.00 1.52
5967 6947 2.435234 TACCGGGACATTGTGCGC 60.435 61.111 6.32 0.00 0.00 6.09
6063 7043 4.079253 AGGTAAGTTGTGGCAATACTTGG 58.921 43.478 19.88 0.00 34.26 3.61
6172 7152 6.145535 GCATATGCATTTGGCTAAGAAGTAC 58.854 40.000 22.84 0.00 45.15 2.73
6174 7154 7.579726 CATATGCATTTGGCTAAGAAGTACTC 58.420 38.462 3.54 0.00 45.15 2.59
6175 7155 4.261801 TGCATTTGGCTAAGAAGTACTCC 58.738 43.478 0.00 0.00 45.15 3.85
6176 7156 3.628032 GCATTTGGCTAAGAAGTACTCCC 59.372 47.826 0.00 0.00 40.25 4.30
6177 7157 4.626529 GCATTTGGCTAAGAAGTACTCCCT 60.627 45.833 0.00 0.00 40.25 4.20
6178 7158 4.820894 TTTGGCTAAGAAGTACTCCCTC 57.179 45.455 0.00 0.00 0.00 4.30
6179 7159 2.748388 TGGCTAAGAAGTACTCCCTCC 58.252 52.381 0.00 0.00 0.00 4.30
6180 7160 2.040939 GGCTAAGAAGTACTCCCTCCC 58.959 57.143 0.00 0.00 0.00 4.30
6181 7161 2.359461 GGCTAAGAAGTACTCCCTCCCT 60.359 54.545 0.00 0.00 0.00 4.20
6182 7162 3.376636 GCTAAGAAGTACTCCCTCCCTT 58.623 50.000 0.00 0.00 0.00 3.95
6183 7163 4.544683 GCTAAGAAGTACTCCCTCCCTTA 58.455 47.826 0.00 0.00 0.00 2.69
6184 7164 4.585581 GCTAAGAAGTACTCCCTCCCTTAG 59.414 50.000 0.00 7.96 34.33 2.18
6185 7165 4.696040 AAGAAGTACTCCCTCCCTTAGT 57.304 45.455 0.00 0.00 0.00 2.24
6186 7166 5.810456 AAGAAGTACTCCCTCCCTTAGTA 57.190 43.478 0.00 0.00 0.00 1.82
6187 7167 5.810456 AGAAGTACTCCCTCCCTTAGTAA 57.190 43.478 0.00 0.00 0.00 2.24
6188 7168 6.163110 AGAAGTACTCCCTCCCTTAGTAAA 57.837 41.667 0.00 0.00 0.00 2.01
6189 7169 6.568795 AGAAGTACTCCCTCCCTTAGTAAAA 58.431 40.000 0.00 0.00 0.00 1.52
6190 7170 6.668718 AGAAGTACTCCCTCCCTTAGTAAAAG 59.331 42.308 0.00 0.00 0.00 2.27
6191 7171 5.913277 AGTACTCCCTCCCTTAGTAAAAGT 58.087 41.667 0.00 0.00 0.00 2.66
6192 7172 6.329404 AGTACTCCCTCCCTTAGTAAAAGTT 58.671 40.000 0.00 0.00 0.00 2.66
6193 7173 7.482157 AGTACTCCCTCCCTTAGTAAAAGTTA 58.518 38.462 0.00 0.00 0.00 2.24
6194 7174 6.870895 ACTCCCTCCCTTAGTAAAAGTTAG 57.129 41.667 0.00 0.00 0.00 2.34
6195 7175 6.329404 ACTCCCTCCCTTAGTAAAAGTTAGT 58.671 40.000 0.00 0.00 0.00 2.24
6196 7176 7.482157 ACTCCCTCCCTTAGTAAAAGTTAGTA 58.518 38.462 0.00 0.00 0.00 1.82
6197 7177 7.398618 ACTCCCTCCCTTAGTAAAAGTTAGTAC 59.601 40.741 0.00 0.00 0.00 2.73
6198 7178 7.248237 TCCCTCCCTTAGTAAAAGTTAGTACA 58.752 38.462 0.00 0.00 0.00 2.90
6199 7179 7.734410 TCCCTCCCTTAGTAAAAGTTAGTACAA 59.266 37.037 0.00 0.00 0.00 2.41
6200 7180 8.377799 CCCTCCCTTAGTAAAAGTTAGTACAAA 58.622 37.037 0.00 0.00 0.00 2.83
6201 7181 9.433153 CCTCCCTTAGTAAAAGTTAGTACAAAG 57.567 37.037 0.00 0.00 0.00 2.77
6202 7182 9.993454 CTCCCTTAGTAAAAGTTAGTACAAAGT 57.007 33.333 0.00 0.00 0.00 2.66
6209 7189 9.880157 AGTAAAAGTTAGTACAAAGTTGAGTCA 57.120 29.630 0.00 0.00 0.00 3.41
6212 7192 9.614792 AAAAGTTAGTACAAAGTTGAGTCATCT 57.385 29.630 0.00 0.00 0.00 2.90
6219 7199 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
6220 7200 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
6221 7201 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
6222 7202 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
6223 7203 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
6224 7204 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
6225 7205 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
6226 7206 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
6227 7207 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
6228 7208 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
6229 7209 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
6230 7210 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
6231 7211 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
6232 7212 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
6233 7213 4.966805 TCTATTTTGGAACGGAGGGAGTAT 59.033 41.667 0.00 0.00 0.00 2.12
6234 7214 6.138263 TCTATTTTGGAACGGAGGGAGTATA 58.862 40.000 0.00 0.00 0.00 1.47
6246 7227 5.182760 CGGAGGGAGTATAAGTGTATACACC 59.817 48.000 28.29 15.02 45.87 4.16
6252 7233 6.183360 GGAGTATAAGTGTATACACCAGTGCA 60.183 42.308 28.29 10.77 45.87 4.57
6346 7327 7.040478 TGTCTGGTGAATAATCCACTGAAAAAG 60.040 37.037 0.00 0.00 35.05 2.27
6394 7375 8.768501 GGGGGAGAAGAAACTATATTGATTTT 57.231 34.615 0.00 0.00 0.00 1.82
6395 7376 9.201989 GGGGGAGAAGAAACTATATTGATTTTT 57.798 33.333 0.00 0.00 0.00 1.94
6432 7413 6.529220 AGCCATCTCAGATTTCATAGGTAAC 58.471 40.000 0.00 0.00 0.00 2.50
6474 7455 9.107367 GAAATGAAAACGACTTCATACTTTCTG 57.893 33.333 14.24 0.00 43.65 3.02
6478 7459 4.761235 ACGACTTCATACTTTCTGTCGA 57.239 40.909 17.94 0.00 46.58 4.20
6480 7461 5.710984 ACGACTTCATACTTTCTGTCGATT 58.289 37.500 17.94 0.00 46.58 3.34
6481 7462 6.849502 ACGACTTCATACTTTCTGTCGATTA 58.150 36.000 17.94 0.00 46.58 1.75
6521 7502 8.459911 AGTGCAATATATAGGTTTTAACACCC 57.540 34.615 7.18 0.00 37.58 4.61
6522 7503 8.056400 AGTGCAATATATAGGTTTTAACACCCA 58.944 33.333 7.18 0.00 37.58 4.51
6523 7504 8.688151 GTGCAATATATAGGTTTTAACACCCAA 58.312 33.333 7.18 0.00 37.58 4.12
6524 7505 8.688151 TGCAATATATAGGTTTTAACACCCAAC 58.312 33.333 7.18 0.00 37.58 3.77
6525 7506 8.909923 GCAATATATAGGTTTTAACACCCAACT 58.090 33.333 7.18 0.00 37.58 3.16
6528 7509 3.812156 AGGTTTTAACACCCAACTTGC 57.188 42.857 7.18 0.00 37.58 4.01
6529 7510 2.432874 AGGTTTTAACACCCAACTTGCC 59.567 45.455 7.18 0.00 37.58 4.52
6530 7511 2.168728 GGTTTTAACACCCAACTTGCCA 59.831 45.455 0.00 0.00 0.00 4.92
6531 7512 3.369576 GGTTTTAACACCCAACTTGCCAA 60.370 43.478 0.00 0.00 0.00 4.52
6532 7513 4.447290 GTTTTAACACCCAACTTGCCAAT 58.553 39.130 0.00 0.00 0.00 3.16
6535 7516 1.786937 ACACCCAACTTGCCAATGAA 58.213 45.000 0.00 0.00 0.00 2.57
6536 7517 1.688197 ACACCCAACTTGCCAATGAAG 59.312 47.619 0.00 0.00 0.00 3.02
6537 7518 1.001181 CACCCAACTTGCCAATGAAGG 59.999 52.381 0.00 0.00 0.00 3.46
6538 7519 1.133199 ACCCAACTTGCCAATGAAGGA 60.133 47.619 0.00 0.00 0.00 3.36
6539 7520 1.969923 CCCAACTTGCCAATGAAGGAA 59.030 47.619 0.00 0.00 0.00 3.36
6540 7521 2.289010 CCCAACTTGCCAATGAAGGAAC 60.289 50.000 0.00 0.00 0.00 3.62
6541 7522 2.364970 CCAACTTGCCAATGAAGGAACA 59.635 45.455 0.00 0.00 0.00 3.18
6542 7523 3.007182 CCAACTTGCCAATGAAGGAACAT 59.993 43.478 0.00 0.00 0.00 2.71
6543 7524 4.220382 CCAACTTGCCAATGAAGGAACATA 59.780 41.667 0.00 0.00 0.00 2.29
6544 7525 5.404946 CAACTTGCCAATGAAGGAACATAG 58.595 41.667 0.00 0.00 0.00 2.23
6545 7526 4.019174 ACTTGCCAATGAAGGAACATAGG 58.981 43.478 0.00 0.00 0.00 2.57
6728 7720 2.599082 CGACTTCATACTTTCTGTCGGC 59.401 50.000 0.00 0.00 42.06 5.54
6783 7775 5.641209 TGAATGCCAAATTTAATTTGTCGGG 59.359 36.000 23.46 12.88 46.22 5.14
6944 7936 3.067180 GCACATGATGGATTTACACTGGG 59.933 47.826 0.00 0.00 0.00 4.45
6996 7988 6.272090 ACAATTTACCAAATGGGGAGAACAAT 59.728 34.615 4.17 0.00 42.91 2.71
7246 8253 4.270008 GGCAGTACAGGAATTGTGGTTAT 58.730 43.478 0.00 0.00 41.10 1.89
7247 8254 5.433526 GGCAGTACAGGAATTGTGGTTATA 58.566 41.667 0.00 0.00 41.10 0.98
7326 8335 2.834638 ATAGCAAAGGCATCACCCTT 57.165 45.000 0.00 0.00 46.97 3.95
7332 8341 0.609131 AAGGCATCACCCTTGTTCCG 60.609 55.000 0.00 0.00 43.43 4.30
7340 8349 1.960689 CACCCTTGTTCCGTTTCCAAT 59.039 47.619 0.00 0.00 0.00 3.16
7592 8601 1.813178 GCATCAGCATCCATCATCTGG 59.187 52.381 0.00 0.00 43.14 3.86
7606 8615 0.923729 ATCTGGGGGTTGGGCACATA 60.924 55.000 0.00 0.00 0.00 2.29
7774 8784 5.801947 GTGGAACATGCACTTACATTTCATC 59.198 40.000 0.00 0.00 44.52 2.92
7957 8967 2.756760 CAGGTGAAACATCCAATCCCAG 59.243 50.000 0.00 0.00 39.98 4.45
8011 9021 7.307870 GCTTATCTGAGATATCTGCCAAAGTTG 60.308 40.741 10.74 0.00 0.00 3.16
8062 9072 7.765695 TTTCAGACCTTCTAAGCATTTTCAT 57.234 32.000 0.00 0.00 0.00 2.57
8063 9073 7.765695 TTCAGACCTTCTAAGCATTTTCATT 57.234 32.000 0.00 0.00 0.00 2.57
8064 9074 7.765695 TCAGACCTTCTAAGCATTTTCATTT 57.234 32.000 0.00 0.00 0.00 2.32
8294 9304 4.960938 AGAACAATACTCTGACTTGCACA 58.039 39.130 0.00 0.00 0.00 4.57
8819 9833 0.754217 CAGGCAAGCCAGCACCATAT 60.754 55.000 14.40 0.00 38.92 1.78
8954 9968 1.338105 CGCCCTGATGTTTGAGAGACA 60.338 52.381 0.00 0.00 0.00 3.41
9111 10125 5.006386 AGTTTTTCCTGATGACCAAGCTAG 58.994 41.667 0.00 0.00 0.00 3.42
9237 10251 4.572795 GCAGCATAAGGAAGGTAGAAGAAC 59.427 45.833 0.00 0.00 0.00 3.01
9249 10263 3.059120 GGTAGAAGAACCAGCAAAACGAC 60.059 47.826 0.00 0.00 39.50 4.34
9254 10268 1.264288 GAACCAGCAAAACGACCAGAG 59.736 52.381 0.00 0.00 0.00 3.35
9279 10293 1.152989 CCAGCTCGATCTGCTTGCTC 61.153 60.000 10.79 0.00 38.92 4.26
9380 10400 2.027460 CCGGCCTGCAACAACAAC 59.973 61.111 0.00 0.00 0.00 3.32
9381 10401 2.780094 CCGGCCTGCAACAACAACA 61.780 57.895 0.00 0.00 0.00 3.33
9382 10402 1.140589 CGGCCTGCAACAACAACAA 59.859 52.632 0.00 0.00 0.00 2.83
9383 10403 1.145162 CGGCCTGCAACAACAACAAC 61.145 55.000 0.00 0.00 0.00 3.32
9384 10404 0.108424 GGCCTGCAACAACAACAACA 60.108 50.000 0.00 0.00 0.00 3.33
9385 10405 1.674221 GGCCTGCAACAACAACAACAA 60.674 47.619 0.00 0.00 0.00 2.83
9386 10406 2.278854 GCCTGCAACAACAACAACAAT 58.721 42.857 0.00 0.00 0.00 2.71
9387 10407 3.452474 GCCTGCAACAACAACAACAATA 58.548 40.909 0.00 0.00 0.00 1.90
9388 10408 3.868077 GCCTGCAACAACAACAACAATAA 59.132 39.130 0.00 0.00 0.00 1.40
9389 10409 4.260172 GCCTGCAACAACAACAACAATAAC 60.260 41.667 0.00 0.00 0.00 1.89
9390 10410 4.867047 CCTGCAACAACAACAACAATAACA 59.133 37.500 0.00 0.00 0.00 2.41
9391 10411 5.349817 CCTGCAACAACAACAACAATAACAA 59.650 36.000 0.00 0.00 0.00 2.83
9392 10412 6.400579 TGCAACAACAACAACAATAACAAG 57.599 33.333 0.00 0.00 0.00 3.16
9393 10413 5.349817 TGCAACAACAACAACAATAACAAGG 59.650 36.000 0.00 0.00 0.00 3.61
9394 10414 5.220567 GCAACAACAACAACAATAACAAGGG 60.221 40.000 0.00 0.00 0.00 3.95
9395 10415 5.923733 ACAACAACAACAATAACAAGGGA 57.076 34.783 0.00 0.00 0.00 4.20
9396 10416 6.287589 ACAACAACAACAATAACAAGGGAA 57.712 33.333 0.00 0.00 0.00 3.97
9440 10460 5.686124 CGGAGCTTAAGAAGAGGATGGAAAT 60.686 44.000 6.67 0.00 0.00 2.17
9467 10488 7.381789 AAGGTAGGAGAAAGAAAGAGAACTT 57.618 36.000 0.00 0.00 38.05 2.66
9502 10523 2.653702 GCAGCGGCGATAGATCCT 59.346 61.111 12.98 0.00 39.76 3.24
9640 10661 0.674895 AGACGGCAGGTGAGAATTGC 60.675 55.000 0.00 0.00 37.11 3.56
9728 10749 2.171448 AGATGCTAACCTCCATGTCCAC 59.829 50.000 0.00 0.00 0.00 4.02
9738 10759 4.129737 ATGTCCACGTCCGCCTCG 62.130 66.667 0.00 0.00 0.00 4.63
9938 10960 1.914798 AGCCATTCTCTTCCTTGCTCT 59.085 47.619 0.00 0.00 0.00 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.188460 ACAATCGCCACTTCACACAATAC 59.812 43.478 0.00 0.00 0.00 1.89
1 2 3.407698 ACAATCGCCACTTCACACAATA 58.592 40.909 0.00 0.00 0.00 1.90
2 3 2.229792 ACAATCGCCACTTCACACAAT 58.770 42.857 0.00 0.00 0.00 2.71
3 4 1.674359 ACAATCGCCACTTCACACAA 58.326 45.000 0.00 0.00 0.00 3.33
4 5 2.535012 TACAATCGCCACTTCACACA 57.465 45.000 0.00 0.00 0.00 3.72
5 6 2.412847 GCTTACAATCGCCACTTCACAC 60.413 50.000 0.00 0.00 0.00 3.82
6 7 1.804151 GCTTACAATCGCCACTTCACA 59.196 47.619 0.00 0.00 0.00 3.58
7 8 1.130561 GGCTTACAATCGCCACTTCAC 59.869 52.381 0.00 0.00 45.59 3.18
8 9 1.448985 GGCTTACAATCGCCACTTCA 58.551 50.000 0.00 0.00 45.59 3.02
14 15 1.666189 GAGAGTTGGCTTACAATCGCC 59.334 52.381 0.00 0.00 46.46 5.54
15 16 1.324736 CGAGAGTTGGCTTACAATCGC 59.675 52.381 0.00 0.00 41.95 4.58
16 17 2.607187 ACGAGAGTTGGCTTACAATCG 58.393 47.619 0.00 12.10 46.40 3.34
30 31 5.419542 TGAACAAGAATGGGATAACGAGAG 58.580 41.667 0.00 0.00 0.00 3.20
31 32 5.414789 TGAACAAGAATGGGATAACGAGA 57.585 39.130 0.00 0.00 0.00 4.04
32 33 6.683974 AATGAACAAGAATGGGATAACGAG 57.316 37.500 0.00 0.00 0.00 4.18
33 34 7.106890 TGTAATGAACAAGAATGGGATAACGA 58.893 34.615 0.00 0.00 34.29 3.85
34 35 7.315247 TGTAATGAACAAGAATGGGATAACG 57.685 36.000 0.00 0.00 34.29 3.18
52 53 6.319405 TCATCTTCACACAATCCCATGTAATG 59.681 38.462 0.00 0.00 46.21 1.90
53 54 6.319658 GTCATCTTCACACAATCCCATGTAAT 59.680 38.462 0.00 0.00 30.84 1.89
54 55 5.647658 GTCATCTTCACACAATCCCATGTAA 59.352 40.000 0.00 0.00 30.84 2.41
55 56 5.185454 GTCATCTTCACACAATCCCATGTA 58.815 41.667 0.00 0.00 30.84 2.29
56 57 4.012374 GTCATCTTCACACAATCCCATGT 58.988 43.478 0.00 0.00 0.00 3.21
57 58 3.379372 GGTCATCTTCACACAATCCCATG 59.621 47.826 0.00 0.00 0.00 3.66
58 59 3.624777 GGTCATCTTCACACAATCCCAT 58.375 45.455 0.00 0.00 0.00 4.00
59 60 2.290896 GGGTCATCTTCACACAATCCCA 60.291 50.000 0.00 0.00 33.33 4.37
60 61 2.025887 AGGGTCATCTTCACACAATCCC 60.026 50.000 0.00 0.00 0.00 3.85
61 62 3.356529 AGGGTCATCTTCACACAATCC 57.643 47.619 0.00 0.00 0.00 3.01
62 63 4.583871 AGAAGGGTCATCTTCACACAATC 58.416 43.478 7.26 0.00 44.01 2.67
63 64 4.647564 AGAAGGGTCATCTTCACACAAT 57.352 40.909 7.26 0.00 44.01 2.71
64 65 4.136796 CAAGAAGGGTCATCTTCACACAA 58.863 43.478 7.26 0.00 44.01 3.33
65 66 3.743521 CAAGAAGGGTCATCTTCACACA 58.256 45.455 7.26 0.00 44.01 3.72
66 67 2.485814 GCAAGAAGGGTCATCTTCACAC 59.514 50.000 7.26 0.00 44.01 3.82
67 68 2.783135 GCAAGAAGGGTCATCTTCACA 58.217 47.619 7.26 0.00 44.01 3.58
68 69 1.734465 CGCAAGAAGGGTCATCTTCAC 59.266 52.381 7.26 0.00 44.01 3.18
69 70 2.099141 CGCAAGAAGGGTCATCTTCA 57.901 50.000 7.26 0.00 44.01 3.02
83 84 1.522258 GCATTGTGGTTTTGTCGCAAG 59.478 47.619 0.00 0.00 37.91 4.01
84 85 1.565305 GCATTGTGGTTTTGTCGCAA 58.435 45.000 0.00 0.00 38.69 4.85
85 86 0.593518 CGCATTGTGGTTTTGTCGCA 60.594 50.000 0.00 0.00 0.00 5.10
86 87 1.274798 CCGCATTGTGGTTTTGTCGC 61.275 55.000 8.14 0.00 0.00 5.19
87 88 0.030101 ACCGCATTGTGGTTTTGTCG 59.970 50.000 16.17 0.00 44.78 4.35
88 89 3.957383 ACCGCATTGTGGTTTTGTC 57.043 47.368 16.17 0.00 44.78 3.18
95 96 0.381801 GAGGCATAACCGCATTGTGG 59.618 55.000 14.72 14.72 46.52 4.17
96 97 1.382522 AGAGGCATAACCGCATTGTG 58.617 50.000 0.00 0.00 46.52 3.33
97 98 3.206150 CTTAGAGGCATAACCGCATTGT 58.794 45.455 0.00 0.00 46.52 2.71
98 99 3.206150 ACTTAGAGGCATAACCGCATTG 58.794 45.455 0.00 0.00 46.52 2.82
99 100 3.467803 GACTTAGAGGCATAACCGCATT 58.532 45.455 0.00 0.00 46.52 3.56
100 101 2.545952 CGACTTAGAGGCATAACCGCAT 60.546 50.000 0.00 0.00 46.52 4.73
101 102 1.202371 CGACTTAGAGGCATAACCGCA 60.202 52.381 0.00 0.00 46.52 5.69
102 103 1.202382 ACGACTTAGAGGCATAACCGC 60.202 52.381 0.00 0.00 46.52 5.68
103 104 2.460918 CACGACTTAGAGGCATAACCG 58.539 52.381 0.00 0.00 46.52 4.44
104 105 2.202566 GCACGACTTAGAGGCATAACC 58.797 52.381 0.00 0.00 39.61 2.85
105 106 2.159085 AGGCACGACTTAGAGGCATAAC 60.159 50.000 0.00 0.00 0.00 1.89
106 107 2.100916 GAGGCACGACTTAGAGGCATAA 59.899 50.000 0.00 0.00 0.00 1.90
107 108 1.681793 GAGGCACGACTTAGAGGCATA 59.318 52.381 0.00 0.00 0.00 3.14
108 109 0.461961 GAGGCACGACTTAGAGGCAT 59.538 55.000 0.00 0.00 0.00 4.40
109 110 1.890894 GAGGCACGACTTAGAGGCA 59.109 57.895 0.00 0.00 0.00 4.75
110 111 1.226717 CGAGGCACGACTTAGAGGC 60.227 63.158 0.00 0.00 45.77 4.70
111 112 2.478989 TCGAGGCACGACTTAGAGG 58.521 57.895 2.07 0.00 46.45 3.69
121 122 3.916392 CTCCCACGTGTCGAGGCAC 62.916 68.421 15.65 0.00 36.35 5.01
122 123 3.680786 CTCCCACGTGTCGAGGCA 61.681 66.667 15.65 0.00 36.35 4.75
123 124 1.381928 TATCTCCCACGTGTCGAGGC 61.382 60.000 22.62 0.00 36.35 4.70
124 125 1.319541 ATATCTCCCACGTGTCGAGG 58.680 55.000 22.62 14.20 37.35 4.63
125 126 2.095668 GCTATATCTCCCACGTGTCGAG 60.096 54.545 15.65 17.66 0.00 4.04
126 127 1.878088 GCTATATCTCCCACGTGTCGA 59.122 52.381 15.65 8.55 0.00 4.20
127 128 1.068472 GGCTATATCTCCCACGTGTCG 60.068 57.143 15.65 4.04 0.00 4.35
128 129 1.068472 CGGCTATATCTCCCACGTGTC 60.068 57.143 15.65 0.00 0.00 3.67
129 130 0.959553 CGGCTATATCTCCCACGTGT 59.040 55.000 15.65 0.00 0.00 4.49
130 131 0.388649 GCGGCTATATCTCCCACGTG 60.389 60.000 9.08 9.08 0.00 4.49
131 132 0.826256 TGCGGCTATATCTCCCACGT 60.826 55.000 0.00 0.00 0.00 4.49
132 133 0.532573 ATGCGGCTATATCTCCCACG 59.467 55.000 0.00 0.00 0.00 4.94
133 134 1.469940 CGATGCGGCTATATCTCCCAC 60.470 57.143 0.00 0.00 0.00 4.61
134 135 0.817654 CGATGCGGCTATATCTCCCA 59.182 55.000 0.00 0.00 0.00 4.37
135 136 0.818296 ACGATGCGGCTATATCTCCC 59.182 55.000 0.00 0.00 0.00 4.30
136 137 1.469940 CCACGATGCGGCTATATCTCC 60.470 57.143 0.00 0.00 0.00 3.71
137 138 1.469940 CCCACGATGCGGCTATATCTC 60.470 57.143 0.00 0.00 0.00 2.75
138 139 0.532573 CCCACGATGCGGCTATATCT 59.467 55.000 0.00 0.00 0.00 1.98
139 140 1.084370 GCCCACGATGCGGCTATATC 61.084 60.000 0.00 0.00 42.21 1.63
140 141 1.079127 GCCCACGATGCGGCTATAT 60.079 57.895 0.00 0.00 42.21 0.86
141 142 2.342279 GCCCACGATGCGGCTATA 59.658 61.111 0.00 0.00 42.21 1.31
148 149 2.782615 GTGTAACGCCCACGATGC 59.217 61.111 0.00 0.00 43.93 3.91
159 160 3.678072 TGCTATGAAGACTTGCGTGTAAC 59.322 43.478 0.00 0.00 0.00 2.50
160 161 3.920446 TGCTATGAAGACTTGCGTGTAA 58.080 40.909 0.00 0.00 0.00 2.41
161 162 3.586100 TGCTATGAAGACTTGCGTGTA 57.414 42.857 0.00 0.00 0.00 2.90
162 163 2.455674 TGCTATGAAGACTTGCGTGT 57.544 45.000 0.00 0.00 0.00 4.49
163 164 2.159653 GGTTGCTATGAAGACTTGCGTG 60.160 50.000 0.00 0.00 0.00 5.34
164 165 2.076863 GGTTGCTATGAAGACTTGCGT 58.923 47.619 0.00 0.00 0.00 5.24
229 231 3.316308 GCATTGACAGTGGTGAAGAAAGT 59.684 43.478 0.00 0.00 0.00 2.66
242 244 8.573885 ACATATAGATTTTCATGGCATTGACAG 58.426 33.333 0.00 0.00 0.00 3.51
287 289 3.673599 AGCTTCGCTTTCTTGCCC 58.326 55.556 0.00 0.00 33.89 5.36
297 299 3.345808 TGTGCCGTGAAGCTTCGC 61.346 61.111 26.65 26.65 0.00 4.70
306 308 0.518636 CTTCATGAAGGTGTGCCGTG 59.481 55.000 25.14 0.00 40.50 4.94
307 309 1.237285 GCTTCATGAAGGTGTGCCGT 61.237 55.000 31.41 0.00 40.50 5.68
310 312 0.807496 GAGGCTTCATGAAGGTGTGC 59.193 55.000 31.41 19.89 38.80 4.57
380 382 2.590007 GCGCATGGCTCCACTAGG 60.590 66.667 0.30 0.00 39.11 3.02
382 384 2.269520 ATTGGCGCATGGCTCCACTA 62.270 55.000 10.83 0.00 43.43 2.74
384 386 1.789078 CTATTGGCGCATGGCTCCAC 61.789 60.000 10.83 0.00 43.43 4.02
386 388 2.912624 GCTATTGGCGCATGGCTCC 61.913 63.158 10.83 0.00 42.94 4.70
420 422 1.154073 CCGACGAGTTCCGGTCTTC 60.154 63.158 0.00 0.00 43.93 2.87
425 427 3.657835 GACGTCCGACGAGTTCCGG 62.658 68.421 27.03 0.00 46.05 5.14
459 461 3.512516 GTGCTTCATGCCGGCCTC 61.513 66.667 26.77 4.02 42.00 4.70
470 472 1.134699 TCACCATCCTCGATGTGCTTC 60.135 52.381 1.26 0.00 38.28 3.86
500 502 3.613689 GGCCGACCCGATCTACCC 61.614 72.222 0.00 0.00 0.00 3.69
573 575 2.749076 CTCTCCAACGGATGATGCAAAA 59.251 45.455 0.00 0.00 0.00 2.44
596 598 2.203584 AGAAATGGGGCTCTCTCATGT 58.796 47.619 0.00 0.00 0.00 3.21
846 1083 1.900486 AGGGTACTACTGTGGTTGAGC 59.100 52.381 1.10 0.00 0.00 4.26
1190 1427 2.436292 CCTCCTCCTCGTCGTCGT 60.436 66.667 1.33 0.00 38.33 4.34
1191 1428 3.878519 GCCTCCTCCTCGTCGTCG 61.879 72.222 0.00 0.00 38.55 5.12
1192 1429 3.878519 CGCCTCCTCCTCGTCGTC 61.879 72.222 0.00 0.00 0.00 4.20
1433 1670 3.244976 CAAAACTTAAATCGCAGGCCAG 58.755 45.455 5.01 0.00 0.00 4.85
1496 1733 0.178846 TTCATCAGGGGGTCAAGGGA 60.179 55.000 0.00 0.00 0.00 4.20
1546 1783 3.989787 TCGTGCAGCTCGCCTTCA 61.990 61.111 12.05 0.00 41.33 3.02
1625 1862 2.577606 TCCACCACGACATTGGAAAT 57.422 45.000 0.00 0.00 39.24 2.17
1668 1905 4.662278 ACCAAGATGCAGGTAAAGCTAAA 58.338 39.130 0.00 0.00 36.07 1.85
1713 1950 2.990740 AGGCAACAAATAAGGGTCCA 57.009 45.000 0.00 0.00 41.41 4.02
1718 1955 5.503846 GCAACACAAAAGGCAACAAATAAGG 60.504 40.000 0.00 0.00 41.41 2.69
1727 1964 2.622942 CCTAGAGCAACACAAAAGGCAA 59.377 45.455 0.00 0.00 0.00 4.52
1864 2101 2.867624 AGAGAGAAACAAATGCAGCCA 58.132 42.857 0.00 0.00 0.00 4.75
2099 2338 7.456253 CATGTCCAATTAAACGACTAAGACAG 58.544 38.462 0.00 0.00 35.41 3.51
2308 2547 5.836821 TCCTATGTAGTCAGCAAGTACAG 57.163 43.478 11.15 0.00 44.89 2.74
2626 2867 5.474876 GCTGGCAGGCTAATACTAAATTCAT 59.525 40.000 17.64 0.00 0.00 2.57
2759 3000 3.393854 ACCCAGGGTGACGAATAGT 57.606 52.632 11.70 0.00 32.98 2.12
2766 3007 9.736671 GAATAACTATTCCTCACCCAGGGTGAC 62.737 48.148 34.62 17.53 44.45 3.67
2767 3008 7.827072 GAATAACTATTCCTCACCCAGGGTGA 61.827 46.154 35.32 35.32 45.54 4.02
2768 3009 5.687706 GAATAACTATTCCTCACCCAGGGTG 60.688 48.000 31.06 31.06 43.50 4.61
2769 3010 2.361085 AACTATTCCTCACCCAGGGT 57.639 50.000 4.76 4.76 43.67 4.34
2770 3011 4.660771 AGAATAACTATTCCTCACCCAGGG 59.339 45.833 2.85 2.85 43.67 4.45
2771 3012 5.896073 AGAATAACTATTCCTCACCCAGG 57.104 43.478 5.95 0.00 42.29 4.45
2772 3013 6.889198 TGAAGAATAACTATTCCTCACCCAG 58.111 40.000 6.65 0.00 42.29 4.45
2773 3014 6.884472 TGAAGAATAACTATTCCTCACCCA 57.116 37.500 6.65 0.00 42.29 4.51
2777 3018 6.352737 GGTGGGTGAAGAATAACTATTCCTCA 60.353 42.308 6.65 6.65 42.29 3.86
2778 3019 6.056236 GGTGGGTGAAGAATAACTATTCCTC 58.944 44.000 5.95 4.07 42.29 3.71
2779 3020 5.731678 AGGTGGGTGAAGAATAACTATTCCT 59.268 40.000 5.95 0.00 42.29 3.36
2780 3021 6.002653 AGGTGGGTGAAGAATAACTATTCC 57.997 41.667 5.95 0.00 42.29 3.01
2781 3022 6.890293 AGAGGTGGGTGAAGAATAACTATTC 58.110 40.000 1.83 1.83 41.78 1.75
2782 3023 6.893020 AGAGGTGGGTGAAGAATAACTATT 57.107 37.500 0.00 0.00 0.00 1.73
2783 3024 8.568617 AATAGAGGTGGGTGAAGAATAACTAT 57.431 34.615 0.00 0.00 0.00 2.12
2784 3025 7.989947 AATAGAGGTGGGTGAAGAATAACTA 57.010 36.000 0.00 0.00 0.00 2.24
2785 3026 6.893020 AATAGAGGTGGGTGAAGAATAACT 57.107 37.500 0.00 0.00 0.00 2.24
2786 3027 7.939784 AAAATAGAGGTGGGTGAAGAATAAC 57.060 36.000 0.00 0.00 0.00 1.89
2787 3028 9.457436 GTTAAAATAGAGGTGGGTGAAGAATAA 57.543 33.333 0.00 0.00 0.00 1.40
2788 3029 8.607713 TGTTAAAATAGAGGTGGGTGAAGAATA 58.392 33.333 0.00 0.00 0.00 1.75
2789 3030 7.466804 TGTTAAAATAGAGGTGGGTGAAGAAT 58.533 34.615 0.00 0.00 0.00 2.40
2790 3031 6.843752 TGTTAAAATAGAGGTGGGTGAAGAA 58.156 36.000 0.00 0.00 0.00 2.52
2791 3032 6.442541 TGTTAAAATAGAGGTGGGTGAAGA 57.557 37.500 0.00 0.00 0.00 2.87
2792 3033 7.112779 AGATGTTAAAATAGAGGTGGGTGAAG 58.887 38.462 0.00 0.00 0.00 3.02
2793 3034 7.027874 AGATGTTAAAATAGAGGTGGGTGAA 57.972 36.000 0.00 0.00 0.00 3.18
2794 3035 6.636454 AGATGTTAAAATAGAGGTGGGTGA 57.364 37.500 0.00 0.00 0.00 4.02
2795 3036 7.041098 GCATAGATGTTAAAATAGAGGTGGGTG 60.041 40.741 0.00 0.00 0.00 4.61
2796 3037 6.998673 GCATAGATGTTAAAATAGAGGTGGGT 59.001 38.462 0.00 0.00 0.00 4.51
2797 3038 6.998074 TGCATAGATGTTAAAATAGAGGTGGG 59.002 38.462 0.00 0.00 0.00 4.61
2798 3039 7.041098 GGTGCATAGATGTTAAAATAGAGGTGG 60.041 40.741 0.00 0.00 0.00 4.61
2799 3040 7.307396 CGGTGCATAGATGTTAAAATAGAGGTG 60.307 40.741 0.00 0.00 0.00 4.00
2800 3041 6.706270 CGGTGCATAGATGTTAAAATAGAGGT 59.294 38.462 0.00 0.00 0.00 3.85
2801 3042 6.706270 ACGGTGCATAGATGTTAAAATAGAGG 59.294 38.462 0.00 0.00 0.00 3.69
2802 3043 7.715265 ACGGTGCATAGATGTTAAAATAGAG 57.285 36.000 0.00 0.00 0.00 2.43
2803 3044 9.772973 ATTACGGTGCATAGATGTTAAAATAGA 57.227 29.630 0.00 0.00 0.00 1.98
2808 3049 9.991388 GTAAAATTACGGTGCATAGATGTTAAA 57.009 29.630 0.00 0.00 0.00 1.52
2860 3101 9.808808 GGTTTTCTTACGTTCTCTTTTTATCTC 57.191 33.333 0.00 0.00 0.00 2.75
2861 3102 9.557061 AGGTTTTCTTACGTTCTCTTTTTATCT 57.443 29.630 0.00 0.00 0.00 1.98
2868 3109 9.298774 CGATTATAGGTTTTCTTACGTTCTCTT 57.701 33.333 0.00 0.00 0.00 2.85
2869 3110 8.465201 ACGATTATAGGTTTTCTTACGTTCTCT 58.535 33.333 0.00 0.00 0.00 3.10
2870 3111 8.626093 ACGATTATAGGTTTTCTTACGTTCTC 57.374 34.615 0.00 0.00 0.00 2.87
2871 3112 7.430502 CGACGATTATAGGTTTTCTTACGTTCT 59.569 37.037 0.00 0.00 0.00 3.01
2872 3113 7.218963 ACGACGATTATAGGTTTTCTTACGTTC 59.781 37.037 0.00 0.00 0.00 3.95
2873 3114 7.029563 ACGACGATTATAGGTTTTCTTACGTT 58.970 34.615 0.00 0.00 0.00 3.99
2874 3115 6.555315 ACGACGATTATAGGTTTTCTTACGT 58.445 36.000 0.00 0.00 0.00 3.57
2875 3116 8.547091 TTACGACGATTATAGGTTTTCTTACG 57.453 34.615 0.00 0.00 0.00 3.18
3329 3570 9.647918 AGCAGCAGCCGGTATATATATATATAT 57.352 33.333 22.83 22.83 43.56 0.86
3331 3572 7.962995 AGCAGCAGCCGGTATATATATATAT 57.037 36.000 17.37 17.37 43.56 0.86
3332 3573 8.873186 TTAGCAGCAGCCGGTATATATATATA 57.127 34.615 1.90 8.16 43.56 0.86
3333 3574 7.776618 TTAGCAGCAGCCGGTATATATATAT 57.223 36.000 10.10 10.10 43.56 0.86
3334 3575 7.450323 TCATTAGCAGCAGCCGGTATATATATA 59.550 37.037 1.90 0.00 43.56 0.86
3335 3576 6.267699 TCATTAGCAGCAGCCGGTATATATAT 59.732 38.462 1.90 0.00 43.56 0.86
3336 3577 5.596772 TCATTAGCAGCAGCCGGTATATATA 59.403 40.000 1.90 0.00 43.56 0.86
3337 3578 4.405680 TCATTAGCAGCAGCCGGTATATAT 59.594 41.667 1.90 0.00 43.56 0.86
3338 3579 3.767131 TCATTAGCAGCAGCCGGTATATA 59.233 43.478 1.90 0.00 43.56 0.86
3339 3580 2.567169 TCATTAGCAGCAGCCGGTATAT 59.433 45.455 1.90 0.00 43.56 0.86
3388 3629 6.764308 TTGATGTCTCATGGAGAAAAATCC 57.236 37.500 0.00 0.00 40.59 3.01
3433 3674 7.834068 TTCAGCTATCAACTATTCAACTGTC 57.166 36.000 0.00 0.00 0.00 3.51
3668 3909 5.732331 TCCCCAAAAGTTCATCCTGATAT 57.268 39.130 0.00 0.00 0.00 1.63
3884 4125 5.804944 AGACAACATCCAGGATCATCTAG 57.195 43.478 0.00 0.00 0.00 2.43
3888 4129 4.849813 TGAAGACAACATCCAGGATCAT 57.150 40.909 0.00 0.00 0.00 2.45
4217 4594 4.652421 TGACAAGCAGCAAAAGAAATGA 57.348 36.364 0.00 0.00 0.00 2.57
4218 4595 5.917541 AATGACAAGCAGCAAAAGAAATG 57.082 34.783 0.00 0.00 0.00 2.32
4219 4596 6.539464 TCAAAATGACAAGCAGCAAAAGAAAT 59.461 30.769 0.00 0.00 0.00 2.17
4222 4599 5.008619 TCAAAATGACAAGCAGCAAAAGA 57.991 34.783 0.00 0.00 0.00 2.52
4223 4600 5.917541 ATCAAAATGACAAGCAGCAAAAG 57.082 34.783 0.00 0.00 0.00 2.27
4226 4603 6.270156 TCATATCAAAATGACAAGCAGCAA 57.730 33.333 0.00 0.00 30.92 3.91
4227 4604 5.900865 TCATATCAAAATGACAAGCAGCA 57.099 34.783 0.00 0.00 30.92 4.41
4268 4645 3.161866 TGCTGACCAAAAGATTTACCCC 58.838 45.455 0.00 0.00 0.00 4.95
4311 4689 8.052748 TCAATAAGCACCAGGACATTAGTATTT 58.947 33.333 0.00 0.00 0.00 1.40
4312 4690 7.573710 TCAATAAGCACCAGGACATTAGTATT 58.426 34.615 0.00 0.00 0.00 1.89
4313 4691 7.136822 TCAATAAGCACCAGGACATTAGTAT 57.863 36.000 0.00 0.00 0.00 2.12
4314 4692 6.553953 TCAATAAGCACCAGGACATTAGTA 57.446 37.500 0.00 0.00 0.00 1.82
4315 4693 5.435686 TCAATAAGCACCAGGACATTAGT 57.564 39.130 0.00 0.00 0.00 2.24
4431 4817 4.620589 AAACCATCAACATGCATTTCCA 57.379 36.364 0.00 0.00 0.00 3.53
5012 5400 6.508777 TGCCATTCAAACTTTTAACAGGTAC 58.491 36.000 0.00 0.00 0.00 3.34
5187 5599 4.064388 TGCGTTCATTCAGACATTTGAGA 58.936 39.130 0.00 0.00 0.00 3.27
5188 5600 4.083643 AGTGCGTTCATTCAGACATTTGAG 60.084 41.667 0.00 0.00 0.00 3.02
5307 5722 5.989477 AGATACATCCATTTCTCCGACAAA 58.011 37.500 0.00 0.00 0.00 2.83
5454 5877 8.094798 ACAAGTCAAAAAGCAATATCGTCTTA 57.905 30.769 0.00 0.00 0.00 2.10
5479 5902 7.229907 GGAGAAAACAATGAGGTTTAGGTGTTA 59.770 37.037 0.00 0.00 39.93 2.41
5557 6293 6.753744 CCTCAAATCAAGCTACAAATAAAGGC 59.246 38.462 0.00 0.00 0.00 4.35
5634 6454 6.115448 AGTGCCCAAATGAGGAGTATATAC 57.885 41.667 4.60 4.60 0.00 1.47
5678 6498 9.956720 AGAATTCGTGATCATTCCATTTTTATC 57.043 29.630 0.00 0.00 30.75 1.75
5681 6501 7.037438 CCAGAATTCGTGATCATTCCATTTTT 58.963 34.615 0.00 0.00 30.75 1.94
5682 6502 6.406177 CCCAGAATTCGTGATCATTCCATTTT 60.406 38.462 0.00 0.00 30.75 1.82
5683 6503 5.068198 CCCAGAATTCGTGATCATTCCATTT 59.932 40.000 0.00 0.00 30.75 2.32
5724 6544 0.179176 TGCGCAACAGTGTTGTCAAC 60.179 50.000 31.12 20.08 36.23 3.18
5848 6828 2.014335 TGAAGATGGATGCACACGAG 57.986 50.000 0.00 0.00 0.00 4.18
5942 6922 1.137086 CAATGTCCCGGTACTGAGGAG 59.863 57.143 2.31 0.00 0.00 3.69
5967 6947 5.127519 TCCATCAGTGCCTTTAATGAATTGG 59.872 40.000 0.00 0.00 30.20 3.16
6063 7043 4.798574 GTGACATTCACTCAACCCATTTC 58.201 43.478 0.00 0.00 43.73 2.17
6172 7152 6.870895 ACTAACTTTTACTAAGGGAGGGAG 57.129 41.667 0.00 0.00 0.00 4.30
6174 7154 7.486407 TGTACTAACTTTTACTAAGGGAGGG 57.514 40.000 0.00 0.00 0.00 4.30
6175 7155 9.433153 CTTTGTACTAACTTTTACTAAGGGAGG 57.567 37.037 0.00 0.00 31.42 4.30
6176 7156 9.993454 ACTTTGTACTAACTTTTACTAAGGGAG 57.007 33.333 0.00 0.00 36.17 4.30
6183 7163 9.880157 TGACTCAACTTTGTACTAACTTTTACT 57.120 29.630 0.00 0.00 0.00 2.24
6186 7166 9.614792 AGATGACTCAACTTTGTACTAACTTTT 57.385 29.630 0.00 0.00 0.00 2.27
6193 7173 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
6194 7174 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
6195 7175 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
6196 7176 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
6197 7177 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
6198 7178 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
6199 7179 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
6200 7180 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
6201 7181 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
6202 7182 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
6203 7183 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
6204 7184 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
6205 7185 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
6206 7186 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
6207 7187 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
6208 7188 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
6209 7189 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
6210 7190 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
6211 7191 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
6212 7192 6.384886 ACTTATACTCCCTCCGTTCCAAAATA 59.615 38.462 0.00 0.00 0.00 1.40
6213 7193 5.191124 ACTTATACTCCCTCCGTTCCAAAAT 59.809 40.000 0.00 0.00 0.00 1.82
6214 7194 4.533311 ACTTATACTCCCTCCGTTCCAAAA 59.467 41.667 0.00 0.00 0.00 2.44
6215 7195 4.081309 CACTTATACTCCCTCCGTTCCAAA 60.081 45.833 0.00 0.00 0.00 3.28
6216 7196 3.449737 CACTTATACTCCCTCCGTTCCAA 59.550 47.826 0.00 0.00 0.00 3.53
6217 7197 3.028850 CACTTATACTCCCTCCGTTCCA 58.971 50.000 0.00 0.00 0.00 3.53
6218 7198 3.029570 ACACTTATACTCCCTCCGTTCC 58.970 50.000 0.00 0.00 0.00 3.62
6219 7199 6.488006 TGTATACACTTATACTCCCTCCGTTC 59.512 42.308 0.08 0.00 40.56 3.95
6220 7200 6.264067 GTGTATACACTTATACTCCCTCCGTT 59.736 42.308 25.56 0.00 43.25 4.44
6221 7201 5.767168 GTGTATACACTTATACTCCCTCCGT 59.233 44.000 25.56 0.00 43.25 4.69
6222 7202 5.182760 GGTGTATACACTTATACTCCCTCCG 59.817 48.000 29.89 0.00 43.34 4.63
6223 7203 6.073314 TGGTGTATACACTTATACTCCCTCC 58.927 44.000 29.89 13.13 46.00 4.30
6224 7204 6.776603 ACTGGTGTATACACTTATACTCCCTC 59.223 42.308 29.89 13.00 46.00 4.30
6225 7205 6.550108 CACTGGTGTATACACTTATACTCCCT 59.450 42.308 29.89 2.16 46.00 4.20
6226 7206 6.737899 GCACTGGTGTATACACTTATACTCCC 60.738 46.154 29.89 14.41 46.00 4.30
6227 7207 6.183360 TGCACTGGTGTATACACTTATACTCC 60.183 42.308 29.89 15.04 46.38 3.85
6228 7208 6.802608 TGCACTGGTGTATACACTTATACTC 58.197 40.000 29.89 15.31 45.73 2.59
6229 7209 6.785337 TGCACTGGTGTATACACTTATACT 57.215 37.500 29.89 8.98 45.73 2.12
6230 7210 9.706691 ATATTGCACTGGTGTATACACTTATAC 57.293 33.333 29.89 19.09 45.73 1.47
6234 7214 9.929180 CTATATATTGCACTGGTGTATACACTT 57.071 33.333 29.89 15.38 45.73 3.16
6246 7227 8.349983 GGGTGTTAAAACCTATATATTGCACTG 58.650 37.037 14.65 0.00 40.35 3.66
6324 7305 6.208599 GGACTTTTTCAGTGGATTATTCACCA 59.791 38.462 0.00 0.00 35.01 4.17
6406 7387 6.011122 ACCTATGAAATCTGAGATGGCTTT 57.989 37.500 0.00 0.00 0.00 3.51
6420 7401 7.817418 ACAGAAAAGCAAGTTACCTATGAAA 57.183 32.000 0.00 0.00 0.00 2.69
6452 7433 6.074516 CGACAGAAAGTATGAAGTCGTTTTCA 60.075 38.462 0.00 6.77 42.55 2.69
6496 7477 8.056400 TGGGTGTTAAAACCTATATATTGCACT 58.944 33.333 14.65 0.00 40.35 4.40
6497 7478 8.228035 TGGGTGTTAAAACCTATATATTGCAC 57.772 34.615 14.65 0.00 40.35 4.57
6498 7479 8.688151 GTTGGGTGTTAAAACCTATATATTGCA 58.312 33.333 14.65 0.00 40.35 4.08
6499 7480 8.909923 AGTTGGGTGTTAAAACCTATATATTGC 58.090 33.333 14.65 0.00 40.35 3.56
6502 7483 8.909923 GCAAGTTGGGTGTTAAAACCTATATAT 58.090 33.333 14.65 0.00 40.35 0.86
6504 7485 6.153851 GGCAAGTTGGGTGTTAAAACCTATAT 59.846 38.462 14.65 0.00 40.35 0.86
6507 7488 3.637694 GGCAAGTTGGGTGTTAAAACCTA 59.362 43.478 14.65 5.70 40.35 3.08
6508 7489 2.432874 GGCAAGTTGGGTGTTAAAACCT 59.567 45.455 14.65 0.00 40.35 3.50
6509 7490 2.168728 TGGCAAGTTGGGTGTTAAAACC 59.831 45.455 6.23 6.23 39.71 3.27
6510 7491 3.528597 TGGCAAGTTGGGTGTTAAAAC 57.471 42.857 4.75 0.00 0.00 2.43
6511 7492 4.162320 TCATTGGCAAGTTGGGTGTTAAAA 59.838 37.500 5.96 0.00 0.00 1.52
6512 7493 3.706594 TCATTGGCAAGTTGGGTGTTAAA 59.293 39.130 5.96 0.00 0.00 1.52
6513 7494 3.300388 TCATTGGCAAGTTGGGTGTTAA 58.700 40.909 5.96 0.00 0.00 2.01
6515 7496 1.786937 TCATTGGCAAGTTGGGTGTT 58.213 45.000 5.96 0.00 0.00 3.32
6516 7497 1.688197 CTTCATTGGCAAGTTGGGTGT 59.312 47.619 5.96 0.00 0.00 4.16
6519 7500 1.631405 TCCTTCATTGGCAAGTTGGG 58.369 50.000 5.96 5.96 0.00 4.12
6520 7501 2.364970 TGTTCCTTCATTGGCAAGTTGG 59.635 45.455 5.96 5.60 0.00 3.77
6521 7502 3.731652 TGTTCCTTCATTGGCAAGTTG 57.268 42.857 5.96 0.00 0.00 3.16
6522 7503 4.463891 CCTATGTTCCTTCATTGGCAAGTT 59.536 41.667 5.96 0.00 35.00 2.66
6523 7504 4.019174 CCTATGTTCCTTCATTGGCAAGT 58.981 43.478 5.96 0.00 35.00 3.16
6524 7505 3.382546 CCCTATGTTCCTTCATTGGCAAG 59.617 47.826 5.96 0.00 38.63 4.01
6525 7506 3.364549 CCCTATGTTCCTTCATTGGCAA 58.635 45.455 0.68 0.68 38.63 4.52
6527 7508 1.683385 GCCCTATGTTCCTTCATTGGC 59.317 52.381 0.00 0.00 38.63 4.52
6528 7509 3.303351 AGCCCTATGTTCCTTCATTGG 57.697 47.619 0.00 0.00 39.28 3.16
6529 7510 4.952335 AGAAAGCCCTATGTTCCTTCATTG 59.048 41.667 0.00 0.00 0.00 2.82
6530 7511 5.198602 AGAAAGCCCTATGTTCCTTCATT 57.801 39.130 0.00 0.00 0.00 2.57
6531 7512 4.870021 AGAAAGCCCTATGTTCCTTCAT 57.130 40.909 0.00 0.00 0.00 2.57
6532 7513 4.783227 ACTAGAAAGCCCTATGTTCCTTCA 59.217 41.667 0.00 0.00 0.00 3.02
6535 7516 6.847036 AGATAACTAGAAAGCCCTATGTTCCT 59.153 38.462 0.00 0.00 0.00 3.36
6536 7517 7.068686 AGATAACTAGAAAGCCCTATGTTCC 57.931 40.000 0.00 0.00 0.00 3.62
6573 7565 7.234371 TGGAATTTTTCAGTGGATTATTCACCA 59.766 33.333 0.00 0.00 35.87 4.17
6655 7647 6.011122 ACCTATGAAATCTGAGATGGCTTT 57.989 37.500 0.00 0.00 0.00 3.51
6827 7819 7.116233 GCCAATAACAAGTTACTGGTTTGATTG 59.884 37.037 18.33 13.91 42.57 2.67
7092 8095 3.068024 ACAACGACATTTGTCAGCCATTT 59.932 39.130 11.02 0.00 44.99 2.32
7246 8253 6.873605 CGATGGTCAGCCTGTATCAATATTTA 59.126 38.462 0.00 0.00 35.27 1.40
7247 8254 5.702670 CGATGGTCAGCCTGTATCAATATTT 59.297 40.000 0.00 0.00 35.27 1.40
7326 8335 4.339530 TGTGATTTCATTGGAAACGGAACA 59.660 37.500 0.00 0.00 45.22 3.18
7332 8341 6.093495 TCGGATACTGTGATTTCATTGGAAAC 59.907 38.462 0.00 0.00 45.22 2.78
7340 8349 4.545208 TGGTTCGGATACTGTGATTTCA 57.455 40.909 0.00 0.00 0.00 2.69
7592 8601 1.042559 CATGGTATGTGCCCAACCCC 61.043 60.000 0.00 0.00 35.14 4.95
7606 8615 1.352017 TCAGGTGATTGTGCTCATGGT 59.648 47.619 0.00 0.00 0.00 3.55
7774 8784 7.095439 GCGAATTCTCCTTCCTATATTGTTCAG 60.095 40.741 3.52 0.00 0.00 3.02
7957 8967 7.224297 TCCCTTCATGTTGGCTCTATTAATAC 58.776 38.462 0.00 0.00 0.00 1.89
8011 9021 8.785329 ACTGAAGAAGGTGAATCTAAGAATTC 57.215 34.615 0.00 0.00 36.40 2.17
8294 9304 1.134159 GGTCATGAGGCAGCAGAATCT 60.134 52.381 0.00 0.00 0.00 2.40
8387 9398 2.029918 GGGTGTGAAATTGACCTTGCTC 60.030 50.000 0.00 0.00 0.00 4.26
8819 9833 0.536687 AGTCGTCGGTGAGGAAGTCA 60.537 55.000 0.00 0.00 0.00 3.41
9111 10125 7.706159 TGCTCCATTGTCAATGAATGTTATAC 58.294 34.615 24.31 6.14 41.46 1.47
9237 10251 0.250295 TCCTCTGGTCGTTTTGCTGG 60.250 55.000 0.00 0.00 0.00 4.85
9249 10263 0.467106 TCGAGCTGGAGATCCTCTGG 60.467 60.000 0.00 0.00 36.82 3.86
9254 10268 0.038343 GCAGATCGAGCTGGAGATCC 60.038 60.000 30.05 10.17 43.03 3.36
9279 10293 0.741927 TGATCGACACAGGCATGCAG 60.742 55.000 21.36 13.91 0.00 4.41
9380 10400 2.094752 CCGGCTTCCCTTGTTATTGTTG 60.095 50.000 0.00 0.00 0.00 3.33
9381 10401 2.167662 CCGGCTTCCCTTGTTATTGTT 58.832 47.619 0.00 0.00 0.00 2.83
9382 10402 1.074889 ACCGGCTTCCCTTGTTATTGT 59.925 47.619 0.00 0.00 0.00 2.71
9383 10403 1.834188 ACCGGCTTCCCTTGTTATTG 58.166 50.000 0.00 0.00 0.00 1.90
9384 10404 2.167662 CAACCGGCTTCCCTTGTTATT 58.832 47.619 0.00 0.00 0.00 1.40
9385 10405 1.615919 CCAACCGGCTTCCCTTGTTAT 60.616 52.381 0.00 0.00 0.00 1.89
9386 10406 0.250989 CCAACCGGCTTCCCTTGTTA 60.251 55.000 0.00 0.00 0.00 2.41
9387 10407 1.530655 CCAACCGGCTTCCCTTGTT 60.531 57.895 0.00 0.00 0.00 2.83
9388 10408 2.115266 CCAACCGGCTTCCCTTGT 59.885 61.111 0.00 0.00 0.00 3.16
9389 10409 1.971695 GACCAACCGGCTTCCCTTG 60.972 63.158 0.00 0.00 34.57 3.61
9390 10410 2.434774 GACCAACCGGCTTCCCTT 59.565 61.111 0.00 0.00 34.57 3.95
9391 10411 4.016706 CGACCAACCGGCTTCCCT 62.017 66.667 0.00 0.00 34.57 4.20
9392 10412 4.324991 ACGACCAACCGGCTTCCC 62.325 66.667 0.00 0.00 34.57 3.97
9393 10413 2.741211 GACGACCAACCGGCTTCC 60.741 66.667 0.00 0.00 34.11 3.46
9394 10414 3.110178 CGACGACCAACCGGCTTC 61.110 66.667 0.00 0.00 34.92 3.86
9395 10415 4.675029 CCGACGACCAACCGGCTT 62.675 66.667 0.00 0.00 36.62 4.35
9440 10460 8.935741 AGTTCTCTTTCTTTCTCCTACCTTAAA 58.064 33.333 0.00 0.00 0.00 1.52
9494 10515 0.193069 AGAGCAGCCCCAGGATCTAT 59.807 55.000 0.00 0.00 0.00 1.98
9502 10523 4.704103 AGTCCGAGAGCAGCCCCA 62.704 66.667 0.00 0.00 0.00 4.96
9640 10661 1.202627 GCACCTGATCCTCCAAGCTAG 60.203 57.143 0.00 0.00 0.00 3.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.