Multiple sequence alignment - TraesCS7D01G249000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G249000 chr7D 100.000 6434 0 0 1 6434 220313696 220307263 0.000000e+00 11882.0
1 TraesCS7D01G249000 chr7D 93.171 410 21 6 1 407 625173698 625174103 4.290000e-166 595.0
2 TraesCS7D01G249000 chr7D 92.476 412 27 4 1 410 96570829 96571238 2.580000e-163 586.0
3 TraesCS7D01G249000 chr7D 89.216 204 16 5 6173 6371 595030462 595030664 3.850000e-62 250.0
4 TraesCS7D01G249000 chr7D 95.918 98 3 1 2511 2607 93543114 93543017 2.400000e-34 158.0
5 TraesCS7D01G249000 chr7D 98.864 88 1 0 2516 2603 361747122 361747035 2.400000e-34 158.0
6 TraesCS7D01G249000 chr7A 94.354 3790 123 33 2602 6369 232627095 232623375 0.000000e+00 5729.0
7 TraesCS7D01G249000 chr7A 91.499 2082 85 41 503 2522 232629143 232627092 0.000000e+00 2780.0
8 TraesCS7D01G249000 chr7A 93.478 414 20 5 1 409 10088965 10089376 5.520000e-170 608.0
9 TraesCS7D01G249000 chr7A 87.692 260 27 3 5932 6189 694329655 694329399 1.360000e-76 298.0
10 TraesCS7D01G249000 chr7A 95.000 60 2 1 427 486 232638416 232638358 6.870000e-15 93.5
11 TraesCS7D01G249000 chr7B 93.563 2004 72 19 3906 5885 179200345 179202315 0.000000e+00 2933.0
12 TraesCS7D01G249000 chr7B 92.596 1999 71 19 594 2522 179196856 179198847 0.000000e+00 2800.0
13 TraesCS7D01G249000 chr7B 94.733 1253 42 10 2664 3908 179199033 179200269 0.000000e+00 1927.0
14 TraesCS7D01G249000 chr7B 85.000 260 30 8 5932 6186 218862689 218862434 8.280000e-64 255.0
15 TraesCS7D01G249000 chr7B 87.349 166 11 6 432 593 179196665 179196824 1.430000e-41 182.0
16 TraesCS7D01G249000 chr7B 96.296 54 2 0 2602 2655 179198844 179198897 8.890000e-14 89.8
17 TraesCS7D01G249000 chr2D 94.647 411 17 5 1 409 54603052 54603459 3.270000e-177 632.0
18 TraesCS7D01G249000 chr2D 92.944 411 15 9 1 409 43520895 43520497 2.580000e-163 586.0
19 TraesCS7D01G249000 chr2D 89.326 178 14 4 6173 6347 375601189 375601014 1.090000e-52 219.0
20 TraesCS7D01G249000 chr2D 91.509 106 7 2 2504 2607 601266157 601266052 1.870000e-30 145.0
21 TraesCS7D01G249000 chr3B 92.944 411 25 4 1 409 463485538 463485130 4.290000e-166 595.0
22 TraesCS7D01G249000 chr3B 84.191 272 36 6 5919 6186 503027139 503027407 2.300000e-64 257.0
23 TraesCS7D01G249000 chr2B 92.701 411 26 4 1 409 470494285 470493877 2.000000e-164 590.0
24 TraesCS7D01G249000 chr2B 86.567 201 22 4 6173 6369 764817871 764818070 3.910000e-52 217.0
25 TraesCS7D01G249000 chr5A 92.683 410 26 4 1 408 588758190 588758597 7.190000e-164 588.0
26 TraesCS7D01G249000 chr5A 86.634 202 16 7 6173 6367 472280595 472280792 5.050000e-51 213.0
27 TraesCS7D01G249000 chr1B 92.308 416 29 3 1 414 649681810 649682224 7.190000e-164 588.0
28 TraesCS7D01G249000 chr1B 84.727 275 34 7 5919 6186 305346421 305346148 1.060000e-67 268.0
29 TraesCS7D01G249000 chr3A 80.813 443 52 21 5932 6347 410103221 410102785 3.740000e-82 316.0
30 TraesCS7D01G249000 chr4B 86.667 255 32 2 5932 6186 387389092 387388840 1.370000e-71 281.0
31 TraesCS7D01G249000 chr4B 84.337 249 29 9 6173 6416 285584865 285585108 1.080000e-57 235.0
32 TraesCS7D01G249000 chr3D 85.214 257 33 4 5932 6186 435485786 435486039 6.400000e-65 259.0
33 TraesCS7D01G249000 chr3D 94.681 94 5 0 2516 2609 567663260 567663167 5.200000e-31 147.0
34 TraesCS7D01G249000 chr3D 90.909 110 6 3 2516 2623 583868986 583869093 1.870000e-30 145.0
35 TraesCS7D01G249000 chr1A 85.000 260 28 8 5932 6186 10121166 10121419 2.980000e-63 254.0
36 TraesCS7D01G249000 chr5D 90.173 173 13 4 6176 6347 511581393 511581224 8.400000e-54 222.0
37 TraesCS7D01G249000 chr6B 86.058 208 22 5 6173 6377 191205759 191205556 3.910000e-52 217.0
38 TraesCS7D01G249000 chr4D 86.869 198 21 5 6173 6367 214751763 214751568 3.910000e-52 217.0
39 TraesCS7D01G249000 chr4D 98.864 88 1 0 2516 2603 371601300 371601213 2.400000e-34 158.0
40 TraesCS7D01G249000 chr6A 84.135 208 30 3 6173 6378 127090343 127090137 1.410000e-46 198.0
41 TraesCS7D01G249000 chr2A 97.778 90 2 0 2521 2610 30217789 30217700 8.640000e-34 156.0
42 TraesCS7D01G249000 chr2A 95.652 92 4 0 2516 2607 603084182 603084273 1.450000e-31 148.0
43 TraesCS7D01G249000 chr4A 94.318 88 5 0 2519 2606 640248421 640248508 1.130000e-27 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G249000 chr7D 220307263 220313696 6433 True 11882.00 11882 100.0000 1 6434 1 chr7D.!!$R2 6433
1 TraesCS7D01G249000 chr7A 232623375 232629143 5768 True 4254.50 5729 92.9265 503 6369 2 chr7A.!!$R3 5866
2 TraesCS7D01G249000 chr7B 179196665 179202315 5650 False 1586.36 2933 92.9074 432 5885 5 chr7B.!!$F1 5453

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
521 522 0.036732 AATGCGAGGCAAAGACTCCA 59.963 50.000 0.00 0.00 43.62 3.86 F
524 525 0.320771 GCGAGGCAAAGACTCCAGAA 60.321 55.000 0.00 0.00 33.37 3.02 F
721 765 0.462789 CCAAATCCATCTTGGCTGCC 59.537 55.000 12.87 12.87 37.14 4.85 F
2531 2657 0.107459 ACGTACTACTCCCTCCGTCC 60.107 60.000 0.00 0.00 0.00 4.79 F
2601 2727 0.042131 TATTGTGGGACGGAGGGAGT 59.958 55.000 0.00 0.00 0.00 3.85 F
3183 3439 0.889994 ATCCAGCAGCAATTTTCGCA 59.110 45.000 0.00 0.00 0.00 5.10 F
4450 4790 1.272212 TCGTGAGTGTTCATGCTAGCA 59.728 47.619 21.85 21.85 39.67 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1739 1838 1.445582 GTGGTCGGCGGTGTTCTAG 60.446 63.158 7.21 0.00 0.00 2.43 R
1767 1869 1.812571 GACGGATGGCAATTCACACTT 59.187 47.619 0.00 0.00 0.00 3.16 R
2582 2708 0.042131 ACTCCCTCCGTCCCACAATA 59.958 55.000 0.00 0.00 0.00 1.90 R
4431 4771 1.391485 GTGCTAGCATGAACACTCACG 59.609 52.381 22.51 0.00 33.30 4.35 R
4489 4829 2.942376 CACCTGCAATATACCGCAAGAA 59.058 45.455 1.78 0.00 37.76 2.52 R
5139 5488 1.494721 TGGGAGAAAGGAACAGCTGTT 59.505 47.619 31.57 31.57 41.64 3.16 R
5749 6102 0.095245 CGACTGTTCATCGCGCAATT 59.905 50.000 8.75 0.00 31.96 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.847516 CGCCGTCGCCGATCTGAA 62.848 66.667 0.00 0.00 35.63 3.02
28 29 2.956964 GCCGTCGCCGATCTGAAG 60.957 66.667 0.00 0.00 35.63 3.02
29 30 2.278857 CCGTCGCCGATCTGAAGG 60.279 66.667 0.00 0.00 35.63 3.46
35 36 4.872357 CCGATCTGAAGGCAGCAT 57.128 55.556 0.00 0.00 42.01 3.79
36 37 2.318224 CCGATCTGAAGGCAGCATG 58.682 57.895 0.00 0.00 42.01 4.06
106 107 2.825836 CGAAGGGCCATCCACAGC 60.826 66.667 6.18 0.00 38.24 4.40
107 108 2.825836 GAAGGGCCATCCACAGCG 60.826 66.667 6.18 0.00 38.24 5.18
148 149 4.394078 CCAAGCCGTCGTCGTCGA 62.394 66.667 13.38 0.00 44.12 4.20
149 150 2.870161 CAAGCCGTCGTCGTCGAG 60.870 66.667 13.38 4.96 46.96 4.04
150 151 4.099170 AAGCCGTCGTCGTCGAGG 62.099 66.667 15.95 15.95 46.96 4.63
203 204 4.615815 GCGCCGCAGATCCCAGAT 62.616 66.667 3.15 0.00 0.00 2.90
204 205 2.356793 CGCCGCAGATCCCAGATC 60.357 66.667 0.00 0.00 0.00 2.75
205 206 2.356793 GCCGCAGATCCCAGATCG 60.357 66.667 0.00 0.00 0.00 3.69
206 207 2.341543 CCGCAGATCCCAGATCGG 59.658 66.667 1.00 1.00 0.00 4.18
207 208 2.502492 CCGCAGATCCCAGATCGGT 61.502 63.158 6.60 0.00 32.93 4.69
208 209 1.006805 CGCAGATCCCAGATCGGTC 60.007 63.158 6.60 0.00 0.00 4.79
209 210 1.006805 GCAGATCCCAGATCGGTCG 60.007 63.158 6.60 0.00 0.00 4.79
210 211 1.006805 CAGATCCCAGATCGGTCGC 60.007 63.158 0.00 0.00 0.00 5.19
211 212 2.049985 GATCCCAGATCGGTCGCG 60.050 66.667 0.00 0.00 0.00 5.87
212 213 4.286320 ATCCCAGATCGGTCGCGC 62.286 66.667 0.00 0.00 0.00 6.86
239 240 4.410400 CCTTGGGGTCCGCCTCAC 62.410 72.222 3.03 0.00 46.84 3.51
240 241 4.410400 CTTGGGGTCCGCCTCACC 62.410 72.222 3.03 0.00 46.84 4.02
246 247 4.452733 GTCCGCCTCACCCCGAAG 62.453 72.222 0.00 0.00 0.00 3.79
247 248 4.689549 TCCGCCTCACCCCGAAGA 62.690 66.667 0.00 0.00 0.00 2.87
248 249 4.452733 CCGCCTCACCCCGAAGAC 62.453 72.222 0.00 0.00 0.00 3.01
249 250 4.796231 CGCCTCACCCCGAAGACG 62.796 72.222 0.00 0.00 39.43 4.18
251 252 4.796231 CCTCACCCCGAAGACGCG 62.796 72.222 3.53 3.53 38.29 6.01
258 259 4.161976 CCGAAGACGCGCGAGAGA 62.162 66.667 39.36 0.00 38.29 3.10
259 260 2.646244 CGAAGACGCGCGAGAGAG 60.646 66.667 39.36 20.02 33.96 3.20
260 261 2.277628 GAAGACGCGCGAGAGAGG 60.278 66.667 39.36 5.57 33.96 3.69
261 262 2.746671 AAGACGCGCGAGAGAGGA 60.747 61.111 39.36 0.00 33.96 3.71
262 263 2.640736 GAAGACGCGCGAGAGAGGAG 62.641 65.000 39.36 3.76 33.96 3.69
263 264 3.196394 GACGCGCGAGAGAGGAGA 61.196 66.667 39.36 0.00 33.96 3.71
264 265 2.515057 ACGCGCGAGAGAGGAGAT 60.515 61.111 39.36 6.60 33.96 2.75
265 266 2.251075 CGCGCGAGAGAGGAGATC 59.749 66.667 28.94 0.00 0.00 2.75
266 267 2.642700 GCGCGAGAGAGGAGATCC 59.357 66.667 12.10 0.00 0.00 3.36
267 268 2.914908 GCGCGAGAGAGGAGATCCC 61.915 68.421 12.10 0.00 36.42 3.85
268 269 2.265182 CGCGAGAGAGGAGATCCCC 61.265 68.421 0.00 0.00 36.42 4.81
269 270 1.906333 GCGAGAGAGGAGATCCCCC 60.906 68.421 0.00 0.00 36.42 5.40
270 271 1.602323 CGAGAGAGGAGATCCCCCG 60.602 68.421 0.00 0.00 36.42 5.73
271 272 1.906333 GAGAGAGGAGATCCCCCGC 60.906 68.421 0.00 0.00 36.42 6.13
272 273 2.920384 GAGAGGAGATCCCCCGCC 60.920 72.222 0.00 0.00 36.42 6.13
273 274 3.758133 GAGAGGAGATCCCCCGCCA 62.758 68.421 0.00 0.00 36.42 5.69
274 275 3.551407 GAGGAGATCCCCCGCCAC 61.551 72.222 0.00 0.00 36.42 5.01
336 337 4.144727 GGCGGAGGGAGAGGAGGA 62.145 72.222 0.00 0.00 0.00 3.71
337 338 2.520741 GCGGAGGGAGAGGAGGAG 60.521 72.222 0.00 0.00 0.00 3.69
338 339 2.197324 CGGAGGGAGAGGAGGAGG 59.803 72.222 0.00 0.00 0.00 4.30
339 340 2.612251 GGAGGGAGAGGAGGAGGG 59.388 72.222 0.00 0.00 0.00 4.30
340 341 2.015726 GGAGGGAGAGGAGGAGGGA 61.016 68.421 0.00 0.00 0.00 4.20
341 342 1.541672 GAGGGAGAGGAGGAGGGAG 59.458 68.421 0.00 0.00 0.00 4.30
342 343 1.230819 AGGGAGAGGAGGAGGGAGT 60.231 63.158 0.00 0.00 0.00 3.85
343 344 0.858139 AGGGAGAGGAGGAGGGAGTT 60.858 60.000 0.00 0.00 0.00 3.01
344 345 0.043485 GGGAGAGGAGGAGGGAGTTT 59.957 60.000 0.00 0.00 0.00 2.66
345 346 1.199615 GGAGAGGAGGAGGGAGTTTG 58.800 60.000 0.00 0.00 0.00 2.93
346 347 0.539518 GAGAGGAGGAGGGAGTTTGC 59.460 60.000 0.00 0.00 0.00 3.68
347 348 1.219393 GAGGAGGAGGGAGTTTGCG 59.781 63.158 0.00 0.00 0.00 4.85
348 349 2.245438 GAGGAGGAGGGAGTTTGCGG 62.245 65.000 0.00 0.00 0.00 5.69
349 350 2.436824 GAGGAGGGAGTTTGCGGC 60.437 66.667 0.00 0.00 0.00 6.53
350 351 4.394712 AGGAGGGAGTTTGCGGCG 62.395 66.667 0.51 0.51 0.00 6.46
367 368 4.468689 GGCGGCGGCTAGGTTTCT 62.469 66.667 27.22 0.00 39.81 2.52
368 369 3.195698 GCGGCGGCTAGGTTTCTG 61.196 66.667 9.78 0.00 35.83 3.02
369 370 2.511600 CGGCGGCTAGGTTTCTGG 60.512 66.667 7.61 0.00 0.00 3.86
370 371 2.824489 GGCGGCTAGGTTTCTGGC 60.824 66.667 0.00 0.00 45.33 4.85
374 375 2.824489 GCTAGGTTTCTGGCCGCC 60.824 66.667 1.04 1.04 41.00 6.13
375 376 2.124695 CTAGGTTTCTGGCCGCCC 60.125 66.667 7.03 0.00 0.00 6.13
376 377 4.090588 TAGGTTTCTGGCCGCCCG 62.091 66.667 7.03 0.00 0.00 6.13
379 380 4.699522 GTTTCTGGCCGCCCGAGT 62.700 66.667 7.03 0.00 0.00 4.18
380 381 4.388499 TTTCTGGCCGCCCGAGTC 62.388 66.667 7.03 0.00 0.00 3.36
414 415 4.065281 CGACGCGAGGGGGTTTCT 62.065 66.667 15.93 0.00 39.74 2.52
415 416 2.434359 GACGCGAGGGGGTTTCTG 60.434 66.667 15.93 0.00 39.74 3.02
416 417 3.952628 GACGCGAGGGGGTTTCTGG 62.953 68.421 15.93 0.00 39.74 3.86
417 418 3.702048 CGCGAGGGGGTTTCTGGA 61.702 66.667 0.00 0.00 0.00 3.86
418 419 2.046217 GCGAGGGGGTTTCTGGAC 60.046 66.667 0.00 0.00 0.00 4.02
419 420 2.264794 CGAGGGGGTTTCTGGACG 59.735 66.667 0.00 0.00 0.00 4.79
420 421 2.669240 GAGGGGGTTTCTGGACGG 59.331 66.667 0.00 0.00 0.00 4.79
421 422 2.933834 AGGGGGTTTCTGGACGGG 60.934 66.667 0.00 0.00 0.00 5.28
422 423 2.931649 GGGGGTTTCTGGACGGGA 60.932 66.667 0.00 0.00 0.00 5.14
423 424 2.669240 GGGGTTTCTGGACGGGAG 59.331 66.667 0.00 0.00 0.00 4.30
424 425 1.916777 GGGGTTTCTGGACGGGAGA 60.917 63.158 0.00 0.00 0.00 3.71
425 426 1.295746 GGGTTTCTGGACGGGAGAC 59.704 63.158 0.00 0.00 0.00 3.36
426 427 1.477685 GGGTTTCTGGACGGGAGACA 61.478 60.000 0.00 0.00 0.00 3.41
427 428 0.037232 GGTTTCTGGACGGGAGACAG 60.037 60.000 0.00 0.00 38.84 3.51
428 429 0.966920 GTTTCTGGACGGGAGACAGA 59.033 55.000 0.00 0.00 42.31 3.41
429 430 1.550976 GTTTCTGGACGGGAGACAGAT 59.449 52.381 0.00 0.00 43.01 2.90
430 431 1.186200 TTCTGGACGGGAGACAGATG 58.814 55.000 0.00 0.00 43.01 2.90
435 436 1.757118 GGACGGGAGACAGATGATCAA 59.243 52.381 0.00 0.00 0.00 2.57
438 439 3.600388 ACGGGAGACAGATGATCAAAAC 58.400 45.455 0.00 0.00 0.00 2.43
445 446 4.872691 AGACAGATGATCAAAACGATGTCC 59.127 41.667 0.00 0.00 33.17 4.02
450 451 7.148407 ACAGATGATCAAAACGATGTCCTAAAC 60.148 37.037 0.00 0.00 33.17 2.01
452 453 4.390603 TGATCAAAACGATGTCCTAAACCG 59.609 41.667 0.00 0.00 33.17 4.44
453 454 3.992643 TCAAAACGATGTCCTAAACCGA 58.007 40.909 0.00 0.00 0.00 4.69
454 455 4.571919 TCAAAACGATGTCCTAAACCGAT 58.428 39.130 0.00 0.00 0.00 4.18
459 460 4.828829 ACGATGTCCTAAACCGATTTTCT 58.171 39.130 0.00 0.00 0.00 2.52
461 462 5.350640 ACGATGTCCTAAACCGATTTTCTTC 59.649 40.000 0.00 0.00 0.00 2.87
462 463 5.350365 CGATGTCCTAAACCGATTTTCTTCA 59.650 40.000 0.00 0.00 0.00 3.02
463 464 6.455646 CGATGTCCTAAACCGATTTTCTTCAG 60.456 42.308 0.00 0.00 0.00 3.02
472 473 3.419915 CGATTTTCTTCAGGCGTTGATG 58.580 45.455 0.00 0.00 35.27 3.07
475 476 2.542020 TTCTTCAGGCGTTGATGTCA 57.458 45.000 0.00 0.00 35.27 3.58
494 495 4.887071 TGTCAGACTTTGTTTGGCATTACT 59.113 37.500 1.31 0.00 27.55 2.24
521 522 0.036732 AATGCGAGGCAAAGACTCCA 59.963 50.000 0.00 0.00 43.62 3.86
522 523 0.392193 ATGCGAGGCAAAGACTCCAG 60.392 55.000 0.00 0.00 43.62 3.86
523 524 1.293498 GCGAGGCAAAGACTCCAGA 59.707 57.895 0.00 0.00 33.37 3.86
524 525 0.320771 GCGAGGCAAAGACTCCAGAA 60.321 55.000 0.00 0.00 33.37 3.02
557 558 3.430453 CTGATGGCAAGGTTAAGGGAAA 58.570 45.455 0.00 0.00 0.00 3.13
585 586 6.668541 ATTCAACAATCCTCACAATAGACG 57.331 37.500 0.00 0.00 0.00 4.18
608 643 6.090358 ACGATAAGGTAGTTTGTTTGACATCG 59.910 38.462 0.00 0.00 37.13 3.84
610 645 5.668558 AAGGTAGTTTGTTTGACATCGTC 57.331 39.130 0.00 0.00 0.00 4.20
621 656 1.067565 TGACATCGTCTGGCAGACTTC 60.068 52.381 36.67 27.39 42.92 3.01
634 669 1.134670 CAGACTTCTCCGGGGTGATTC 60.135 57.143 0.00 0.00 0.00 2.52
721 765 0.462789 CCAAATCCATCTTGGCTGCC 59.537 55.000 12.87 12.87 37.14 4.85
906 978 4.349503 TCTCCCCCGTCGACCGAA 62.350 66.667 10.58 0.00 39.56 4.30
1128 1205 1.629013 CGTCTGCTCGCTTTGATACA 58.371 50.000 0.00 0.00 0.00 2.29
1323 1415 1.529010 CTGTGCCAAGCAACCAGGA 60.529 57.895 0.00 0.00 41.47 3.86
1333 1425 1.021390 GCAACCAGGACACTCATCCG 61.021 60.000 0.00 0.00 44.22 4.18
1489 1583 3.433456 CCAATGGTGTTTTGCCTTCCTTT 60.433 43.478 0.00 0.00 0.00 3.11
1490 1584 2.977772 TGGTGTTTTGCCTTCCTTTG 57.022 45.000 0.00 0.00 0.00 2.77
1491 1585 1.134551 TGGTGTTTTGCCTTCCTTTGC 60.135 47.619 0.00 0.00 0.00 3.68
1492 1586 1.581934 GTGTTTTGCCTTCCTTTGCC 58.418 50.000 0.00 0.00 0.00 4.52
1518 1612 4.873827 TCAACGACTCTTTTAAGTGCTTGT 59.126 37.500 0.00 0.00 0.00 3.16
1519 1613 5.006358 TCAACGACTCTTTTAAGTGCTTGTC 59.994 40.000 0.00 0.00 0.00 3.18
1520 1614 4.694339 ACGACTCTTTTAAGTGCTTGTCT 58.306 39.130 0.00 0.00 0.00 3.41
1521 1615 4.745620 ACGACTCTTTTAAGTGCTTGTCTC 59.254 41.667 0.00 0.00 0.00 3.36
1522 1616 4.745125 CGACTCTTTTAAGTGCTTGTCTCA 59.255 41.667 0.00 0.00 0.00 3.27
1767 1869 3.625897 CCGACCACTGGCCAGTCA 61.626 66.667 35.79 0.00 40.20 3.41
1799 1901 6.767524 TTGCCATCCGTCAAACTATATTTT 57.232 33.333 0.00 0.00 0.00 1.82
1873 1975 9.708092 TTCACATTATGCAATTTGAGAAATCAA 57.292 25.926 0.00 0.00 33.53 2.57
1879 1981 5.366460 TGCAATTTGAGAAATCAAAAGCCA 58.634 33.333 19.62 10.43 42.04 4.75
1886 1988 1.000274 GAAATCAAAAGCCACGCCAGT 60.000 47.619 0.00 0.00 0.00 4.00
2006 2110 7.897575 AATTGTGAACTGCTTAACAACAAAA 57.102 28.000 0.00 0.00 35.51 2.44
2034 2138 6.183361 TGGTAATGTAGCTCAGGATATTGCTT 60.183 38.462 0.00 0.00 37.02 3.91
2243 2364 5.617751 GCTGCACTCATCAATACGAACTTTT 60.618 40.000 0.00 0.00 0.00 2.27
2409 2530 1.302351 GTCTGAGCCTGCAAGCAGT 60.302 57.895 19.60 3.14 42.15 4.40
2445 2568 8.836268 ACCTTATGTTCGTAAATAACTGTGAA 57.164 30.769 0.00 0.00 0.00 3.18
2522 2648 6.368516 AGAACTGTTCTCACTACGTACTACTC 59.631 42.308 17.00 0.00 34.07 2.59
2523 2649 4.934602 ACTGTTCTCACTACGTACTACTCC 59.065 45.833 0.00 0.00 0.00 3.85
2524 2650 4.256920 TGTTCTCACTACGTACTACTCCC 58.743 47.826 0.00 0.00 0.00 4.30
2525 2651 4.019860 TGTTCTCACTACGTACTACTCCCT 60.020 45.833 0.00 0.00 0.00 4.20
2526 2652 4.399004 TCTCACTACGTACTACTCCCTC 57.601 50.000 0.00 0.00 0.00 4.30
2527 2653 3.133721 TCTCACTACGTACTACTCCCTCC 59.866 52.174 0.00 0.00 0.00 4.30
2528 2654 2.159043 TCACTACGTACTACTCCCTCCG 60.159 54.545 0.00 0.00 0.00 4.63
2529 2655 1.834263 ACTACGTACTACTCCCTCCGT 59.166 52.381 0.00 0.00 0.00 4.69
2530 2656 2.159028 ACTACGTACTACTCCCTCCGTC 60.159 54.545 0.00 0.00 0.00 4.79
2531 2657 0.107459 ACGTACTACTCCCTCCGTCC 60.107 60.000 0.00 0.00 0.00 4.79
2532 2658 0.817229 CGTACTACTCCCTCCGTCCC 60.817 65.000 0.00 0.00 0.00 4.46
2533 2659 0.257039 GTACTACTCCCTCCGTCCCA 59.743 60.000 0.00 0.00 0.00 4.37
2534 2660 1.133544 GTACTACTCCCTCCGTCCCAT 60.134 57.143 0.00 0.00 0.00 4.00
2535 2661 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
2536 2662 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
2537 2663 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
2538 2664 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
2539 2665 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2540 2666 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2541 2667 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2542 2668 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2543 2669 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2544 2670 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
2545 2671 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
2546 2672 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
2547 2673 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
2548 2674 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
2549 2675 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
2550 2676 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
2551 2677 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
2552 2678 7.853929 CCGTCCCATAATATAAGAACGTTTTTG 59.146 37.037 13.87 0.00 0.00 2.44
2553 2679 8.605746 CGTCCCATAATATAAGAACGTTTTTGA 58.394 33.333 13.87 2.81 0.00 2.69
2554 2680 9.712359 GTCCCATAATATAAGAACGTTTTTGAC 57.288 33.333 13.87 5.89 0.00 3.18
2555 2681 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
2556 2682 9.498307 CCCATAATATAAGAACGTTTTTGACAC 57.502 33.333 13.87 0.00 0.00 3.67
2562 2688 7.781548 ATAAGAACGTTTTTGACACTACACT 57.218 32.000 13.87 0.00 0.00 3.55
2563 2689 8.876275 ATAAGAACGTTTTTGACACTACACTA 57.124 30.769 13.87 0.00 0.00 2.74
2564 2690 6.823678 AGAACGTTTTTGACACTACACTAG 57.176 37.500 0.46 0.00 0.00 2.57
2565 2691 6.335777 AGAACGTTTTTGACACTACACTAGT 58.664 36.000 0.46 0.00 40.28 2.57
2580 2706 8.732746 ACTACACTAGTGTCAAAAATGTTCTT 57.267 30.769 31.11 4.99 43.74 2.52
2581 2707 9.826574 ACTACACTAGTGTCAAAAATGTTCTTA 57.173 29.630 31.11 8.36 43.74 2.10
2589 2715 9.912634 AGTGTCAAAAATGTTCTTATATTGTGG 57.087 29.630 0.00 0.00 0.00 4.17
2590 2716 9.139174 GTGTCAAAAATGTTCTTATATTGTGGG 57.861 33.333 0.00 0.00 0.00 4.61
2591 2717 9.083422 TGTCAAAAATGTTCTTATATTGTGGGA 57.917 29.630 0.00 0.00 0.00 4.37
2592 2718 9.353999 GTCAAAAATGTTCTTATATTGTGGGAC 57.646 33.333 0.00 0.00 0.00 4.46
2593 2719 8.240682 TCAAAAATGTTCTTATATTGTGGGACG 58.759 33.333 0.00 0.00 0.00 4.79
2594 2720 6.693315 AAATGTTCTTATATTGTGGGACGG 57.307 37.500 0.00 0.00 0.00 4.79
2595 2721 5.623956 ATGTTCTTATATTGTGGGACGGA 57.376 39.130 0.00 0.00 0.00 4.69
2596 2722 5.018539 TGTTCTTATATTGTGGGACGGAG 57.981 43.478 0.00 0.00 0.00 4.63
2597 2723 4.141801 TGTTCTTATATTGTGGGACGGAGG 60.142 45.833 0.00 0.00 0.00 4.30
2598 2724 2.969950 TCTTATATTGTGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
2599 2725 2.779429 TATATTGTGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
2600 2726 1.424638 ATATTGTGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
2601 2727 0.042131 TATTGTGGGACGGAGGGAGT 59.958 55.000 0.00 0.00 0.00 3.85
2602 2728 0.042131 ATTGTGGGACGGAGGGAGTA 59.958 55.000 0.00 0.00 0.00 2.59
2603 2729 0.901580 TTGTGGGACGGAGGGAGTAC 60.902 60.000 0.00 0.00 0.00 2.73
2604 2730 1.000107 GTGGGACGGAGGGAGTACT 60.000 63.158 0.00 0.00 0.00 2.73
2799 3053 8.456904 TTTAGTATAAGACTGCTGTTTACACG 57.543 34.615 0.00 0.00 39.39 4.49
3156 3412 3.054434 TGTCAACATTCTACAGGGATGGG 60.054 47.826 0.00 0.00 0.00 4.00
3183 3439 0.889994 ATCCAGCAGCAATTTTCGCA 59.110 45.000 0.00 0.00 0.00 5.10
3267 3523 6.150976 TGGCTTCACTTGATAATTTTGACGAT 59.849 34.615 0.00 0.00 0.00 3.73
3317 3573 4.681483 GCAAGACAAAATGCAGGTTTAGTC 59.319 41.667 13.96 13.96 42.12 2.59
3705 3961 2.095059 AGCTGCAATTTCGATGGTTCAC 60.095 45.455 1.02 0.00 0.00 3.18
3754 4010 5.544650 TCATGAGCATAGTGTATGTGATGG 58.455 41.667 0.00 0.00 38.43 3.51
3767 4023 7.443575 AGTGTATGTGATGGCATTCTTAGAATC 59.556 37.037 4.24 0.84 0.00 2.52
3826 4083 1.715019 TTGGCAGGGGTAACAGCTGT 61.715 55.000 15.25 15.25 39.74 4.40
4001 4340 8.424918 CCATAGTCCTAATTTGCTCTTCTCTTA 58.575 37.037 0.00 0.00 0.00 2.10
4044 4383 8.630917 TGCTATAGGTAGACTAGAATGTGTTTC 58.369 37.037 1.04 0.00 34.56 2.78
4056 4395 6.544928 AGAATGTGTTTCCTGAACCTTTTT 57.455 33.333 0.00 0.00 37.45 1.94
4077 4416 9.301153 CTTTTTGTAACTGTCTAATGCTTTTGT 57.699 29.630 0.00 0.00 0.00 2.83
4157 4497 5.622346 ATCTGTAATCTGAAGTTCCTCCC 57.378 43.478 0.00 0.00 0.00 4.30
4391 4731 4.439305 TGTGAGCTTGTTTTGATATGGC 57.561 40.909 0.00 0.00 0.00 4.40
4397 4737 6.064846 AGCTTGTTTTGATATGGCTTATCG 57.935 37.500 13.72 1.88 39.77 2.92
4408 4748 1.798223 TGGCTTATCGCGATTGCATAC 59.202 47.619 32.27 21.96 42.97 2.39
4431 4771 3.437049 GTGATACAGTGCTTCTTTGGGTC 59.563 47.826 0.00 0.00 0.00 4.46
4449 4789 1.656095 GTCGTGAGTGTTCATGCTAGC 59.344 52.381 8.10 8.10 39.67 3.42
4450 4790 1.272212 TCGTGAGTGTTCATGCTAGCA 59.728 47.619 21.85 21.85 39.67 3.49
4451 4791 1.391485 CGTGAGTGTTCATGCTAGCAC 59.609 52.381 22.07 7.93 35.39 4.40
4452 4792 2.416747 GTGAGTGTTCATGCTAGCACA 58.583 47.619 22.07 10.87 35.39 4.57
4453 4793 3.005554 GTGAGTGTTCATGCTAGCACAT 58.994 45.455 22.07 1.24 35.39 3.21
4489 4829 5.533154 TCATGTTGGTGATAAAACTCGGTTT 59.467 36.000 0.00 0.00 37.34 3.27
4501 4841 3.598019 ACTCGGTTTTCTTGCGGTATA 57.402 42.857 0.00 0.00 0.00 1.47
4502 4842 4.133013 ACTCGGTTTTCTTGCGGTATAT 57.867 40.909 0.00 0.00 0.00 0.86
4784 5128 6.147864 AGCAGTGATTTGTAACATTGTGTT 57.852 33.333 0.00 0.67 43.88 3.32
4893 5237 4.437390 CCAGGTATTGCTCGTTCATTTGTC 60.437 45.833 0.00 0.00 0.00 3.18
4906 5250 5.783654 CGTTCATTTGTCTAATTCACGTGTC 59.216 40.000 16.51 0.00 30.01 3.67
4907 5251 6.563196 CGTTCATTTGTCTAATTCACGTGTCA 60.563 38.462 16.51 3.88 30.01 3.58
4985 5334 4.658786 AGTGGCGAGGGGGAAGGT 62.659 66.667 0.00 0.00 0.00 3.50
5139 5488 6.306199 TCATCTCCTGTGAAATTCCTGAAAA 58.694 36.000 0.00 0.00 0.00 2.29
5173 5522 8.292444 TCCTTTCTCCCATTGTAAATACATTG 57.708 34.615 7.98 7.98 37.33 2.82
5276 5625 8.755977 CCATAGTTAAAACTCTTACCTGACCTA 58.244 37.037 0.00 0.00 40.37 3.08
5284 5633 6.063496 ACTCTTACCTGACCTATTTTTCCC 57.937 41.667 0.00 0.00 0.00 3.97
5289 5638 3.523972 ACCTGACCTATTTTTCCCTCCTC 59.476 47.826 0.00 0.00 0.00 3.71
5309 5658 2.158957 TCCCACACAAGACACTGAGAAC 60.159 50.000 0.00 0.00 0.00 3.01
5317 5666 6.375455 ACACAAGACACTGAGAACTCATTTTT 59.625 34.615 4.96 0.00 39.13 1.94
5737 6090 3.118629 TCTCTGCTTTCTGTTGTGACTGT 60.119 43.478 0.00 0.00 0.00 3.55
5770 6132 1.218875 TTGCGCGATGAACAGTCGTT 61.219 50.000 12.10 0.00 40.98 3.85
5806 6168 5.413833 AGTTGATGTCCTGTTTAGAATGCAG 59.586 40.000 0.00 0.00 0.00 4.41
5810 6172 6.489700 TGATGTCCTGTTTAGAATGCAGAAAA 59.510 34.615 0.00 0.00 32.39 2.29
5811 6173 6.072112 TGTCCTGTTTAGAATGCAGAAAAC 57.928 37.500 0.00 0.87 32.39 2.43
5812 6174 5.827797 TGTCCTGTTTAGAATGCAGAAAACT 59.172 36.000 13.64 3.11 33.89 2.66
5813 6175 6.145535 GTCCTGTTTAGAATGCAGAAAACTG 58.854 40.000 13.64 12.84 33.89 3.16
5814 6176 5.827797 TCCTGTTTAGAATGCAGAAAACTGT 59.172 36.000 13.64 0.00 33.89 3.55
5815 6177 6.995686 TCCTGTTTAGAATGCAGAAAACTGTA 59.004 34.615 13.64 0.00 33.89 2.74
5816 6178 7.041372 TCCTGTTTAGAATGCAGAAAACTGTAC 60.041 37.037 13.64 0.00 33.89 2.90
5817 6179 7.255104 CCTGTTTAGAATGCAGAAAACTGTACA 60.255 37.037 13.64 0.00 33.89 2.90
5887 6249 2.530460 TTTACAGGATTGCATGGGCT 57.470 45.000 0.00 0.00 41.91 5.19
5888 6250 1.766494 TTACAGGATTGCATGGGCTG 58.234 50.000 0.00 0.00 41.91 4.85
5889 6251 0.918258 TACAGGATTGCATGGGCTGA 59.082 50.000 0.00 0.00 41.91 4.26
5890 6252 0.260816 ACAGGATTGCATGGGCTGAT 59.739 50.000 0.00 0.00 41.91 2.90
5891 6253 0.673985 CAGGATTGCATGGGCTGATG 59.326 55.000 0.00 0.00 41.91 3.07
5892 6254 0.469331 AGGATTGCATGGGCTGATGG 60.469 55.000 0.00 0.00 41.91 3.51
5893 6255 1.469335 GGATTGCATGGGCTGATGGG 61.469 60.000 0.00 0.00 41.91 4.00
5894 6256 2.095978 GATTGCATGGGCTGATGGGC 62.096 60.000 0.00 0.00 41.91 5.36
5920 6282 5.177326 GCAATGTGCAATGGGAAAAAGATA 58.823 37.500 0.00 0.00 44.26 1.98
5948 6310 9.783256 AAAAATACGAAATGATAAGTGCCTTAC 57.217 29.630 0.00 0.00 0.00 2.34
5970 6332 2.298411 GTGGCATAAAGCAACATGGG 57.702 50.000 0.00 0.00 46.95 4.00
5971 6333 1.740043 GTGGCATAAAGCAACATGGGC 60.740 52.381 0.00 0.00 46.95 5.36
6000 6362 5.508489 CGCCTTCATTATCATCCATTTTGCT 60.508 40.000 0.00 0.00 0.00 3.91
6008 6370 7.566760 TTATCATCCATTTTGCTACGTCAAT 57.433 32.000 0.00 0.00 0.00 2.57
6009 6371 5.484173 TCATCCATTTTGCTACGTCAATC 57.516 39.130 0.00 0.00 0.00 2.67
6011 6373 5.589855 TCATCCATTTTGCTACGTCAATCAT 59.410 36.000 0.00 0.00 0.00 2.45
6035 6397 3.191162 TGACATCAGCGGAATCTTTTTGG 59.809 43.478 0.00 0.00 0.00 3.28
6113 6477 7.062488 TCGTTTTCATCATTAAATTCGTCTCGA 59.938 33.333 0.00 0.00 0.00 4.04
6135 6499 6.918569 TCGACGAGATCTTCAAAATTAGATCC 59.081 38.462 10.90 4.36 45.05 3.36
6136 6500 6.920758 CGACGAGATCTTCAAAATTAGATCCT 59.079 38.462 10.90 1.81 45.05 3.24
6190 6555 4.506758 GCCAAAAGTTGCCATGATATGTT 58.493 39.130 0.00 0.00 0.00 2.71
6191 6556 4.937015 GCCAAAAGTTGCCATGATATGTTT 59.063 37.500 0.00 0.00 0.00 2.83
6192 6557 5.063817 GCCAAAAGTTGCCATGATATGTTTC 59.936 40.000 0.00 0.00 0.00 2.78
6196 6561 7.414222 AAAGTTGCCATGATATGTTTCATCT 57.586 32.000 0.00 0.00 34.09 2.90
6197 6562 8.523915 AAAGTTGCCATGATATGTTTCATCTA 57.476 30.769 0.00 0.00 34.09 1.98
6198 6563 8.701908 AAGTTGCCATGATATGTTTCATCTAT 57.298 30.769 0.00 0.00 34.09 1.98
6199 6564 8.701908 AGTTGCCATGATATGTTTCATCTATT 57.298 30.769 0.00 0.00 34.09 1.73
6200 6565 8.790718 AGTTGCCATGATATGTTTCATCTATTC 58.209 33.333 0.00 0.00 34.09 1.75
6201 6566 8.790718 GTTGCCATGATATGTTTCATCTATTCT 58.209 33.333 0.00 0.00 34.09 2.40
6202 6567 8.929260 TGCCATGATATGTTTCATCTATTCTT 57.071 30.769 0.00 0.00 34.09 2.52
6245 6610 6.815089 ACCATTGCATTTCAACTACTTTTCA 58.185 32.000 0.00 0.00 37.53 2.69
6246 6611 7.444299 ACCATTGCATTTCAACTACTTTTCAT 58.556 30.769 0.00 0.00 37.53 2.57
6247 6612 7.385752 ACCATTGCATTTCAACTACTTTTCATG 59.614 33.333 0.00 0.00 37.53 3.07
6248 6613 7.148540 CCATTGCATTTCAACTACTTTTCATGG 60.149 37.037 0.00 0.00 37.53 3.66
6249 6614 6.647334 TGCATTTCAACTACTTTTCATGGA 57.353 33.333 0.00 0.00 0.00 3.41
6250 6615 7.048629 TGCATTTCAACTACTTTTCATGGAA 57.951 32.000 0.00 0.00 0.00 3.53
6251 6616 7.495901 TGCATTTCAACTACTTTTCATGGAAA 58.504 30.769 0.00 0.00 0.00 3.13
6252 6617 7.984050 TGCATTTCAACTACTTTTCATGGAAAA 59.016 29.630 0.00 4.31 38.90 2.29
6253 6618 8.992073 GCATTTCAACTACTTTTCATGGAAAAT 58.008 29.630 0.00 0.00 40.14 1.82
6333 6698 8.756927 TGGATCATGGCAATTTTTAGTAATTCA 58.243 29.630 0.00 0.00 0.00 2.57
6334 6699 9.768662 GGATCATGGCAATTTTTAGTAATTCAT 57.231 29.630 0.00 0.00 0.00 2.57
6339 6704 8.945481 TGGCAATTTTTAGTAATTCATCATGG 57.055 30.769 0.00 0.00 0.00 3.66
6340 6705 7.495279 TGGCAATTTTTAGTAATTCATCATGGC 59.505 33.333 0.00 0.00 0.00 4.40
6341 6706 7.495279 GGCAATTTTTAGTAATTCATCATGGCA 59.505 33.333 0.00 0.00 0.00 4.92
6342 6707 8.881743 GCAATTTTTAGTAATTCATCATGGCAA 58.118 29.630 0.00 0.00 0.00 4.52
6392 6757 6.909550 TTTTTGTATGAACTATGGCAGGTT 57.090 33.333 8.09 8.09 0.00 3.50
6393 6758 6.909550 TTTTGTATGAACTATGGCAGGTTT 57.090 33.333 9.42 0.00 0.00 3.27
6394 6759 6.909550 TTTGTATGAACTATGGCAGGTTTT 57.090 33.333 9.42 4.69 0.00 2.43
6395 6760 5.895636 TGTATGAACTATGGCAGGTTTTG 57.104 39.130 9.42 0.00 0.00 2.44
6396 6761 5.321102 TGTATGAACTATGGCAGGTTTTGT 58.679 37.500 9.42 3.43 0.00 2.83
6397 6762 4.789012 ATGAACTATGGCAGGTTTTGTG 57.211 40.909 9.42 0.00 0.00 3.33
6398 6763 2.295909 TGAACTATGGCAGGTTTTGTGC 59.704 45.455 9.42 0.00 40.42 4.57
6399 6764 1.993956 ACTATGGCAGGTTTTGTGCA 58.006 45.000 0.00 0.00 43.12 4.57
6400 6765 2.528564 ACTATGGCAGGTTTTGTGCAT 58.471 42.857 0.00 0.00 43.12 3.96
6401 6766 2.231964 ACTATGGCAGGTTTTGTGCATG 59.768 45.455 0.00 0.00 43.12 4.06
6402 6767 1.050204 ATGGCAGGTTTTGTGCATGT 58.950 45.000 0.00 0.00 43.12 3.21
6418 6783 6.637657 TGTGCATGTATCATGGCAAATTTAA 58.362 32.000 10.96 0.00 38.10 1.52
6419 6784 7.101700 TGTGCATGTATCATGGCAAATTTAAA 58.898 30.769 10.96 0.00 38.10 1.52
6421 6786 9.258826 GTGCATGTATCATGGCAAATTTAAATA 57.741 29.630 0.01 0.00 38.10 1.40
6433 6798 8.324306 TGGCAAATTTAAATAATTCACCATGGA 58.676 29.630 21.47 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 1.525535 ATGCTGCCTTCAGATCGGC 60.526 57.895 0.00 2.63 46.46 5.54
18 19 1.783031 GCATGCTGCCTTCAGATCGG 61.783 60.000 11.37 0.00 42.95 4.18
19 20 1.093496 TGCATGCTGCCTTCAGATCG 61.093 55.000 20.33 0.00 44.23 3.69
20 21 0.381089 GTGCATGCTGCCTTCAGATC 59.619 55.000 20.33 0.00 44.23 2.75
21 22 1.374343 CGTGCATGCTGCCTTCAGAT 61.374 55.000 20.33 0.00 44.23 2.90
22 23 2.036571 CGTGCATGCTGCCTTCAGA 61.037 57.895 20.33 0.00 44.23 3.27
23 24 2.483745 CGTGCATGCTGCCTTCAG 59.516 61.111 20.33 0.00 44.23 3.02
24 25 3.740397 GCGTGCATGCTGCCTTCA 61.740 61.111 23.72 0.00 44.23 3.02
25 26 4.487412 GGCGTGCATGCTGCCTTC 62.487 66.667 33.52 16.76 44.23 3.46
88 89 2.124570 CTGTGGATGGCCCTTCGG 60.125 66.667 0.00 0.00 35.38 4.30
89 90 2.825836 GCTGTGGATGGCCCTTCG 60.826 66.667 0.00 0.00 35.38 3.79
90 91 2.825836 CGCTGTGGATGGCCCTTC 60.826 66.667 0.00 0.00 35.38 3.46
131 132 4.394078 TCGACGACGACGGCTTGG 62.394 66.667 18.73 0.00 46.46 3.61
132 133 2.870161 CTCGACGACGACGGCTTG 60.870 66.667 18.73 0.00 46.46 4.01
133 134 4.099170 CCTCGACGACGACGGCTT 62.099 66.667 18.73 0.00 46.46 4.35
135 136 4.808238 GTCCTCGACGACGACGGC 62.808 72.222 18.73 7.81 43.81 5.68
186 187 4.615815 ATCTGGGATCTGCGGCGC 62.616 66.667 27.44 27.44 0.00 6.53
187 188 2.356793 GATCTGGGATCTGCGGCG 60.357 66.667 0.51 0.51 0.00 6.46
188 189 2.356793 CGATCTGGGATCTGCGGC 60.357 66.667 0.00 0.00 0.00 6.53
189 190 2.341543 CCGATCTGGGATCTGCGG 59.658 66.667 6.07 0.00 0.00 5.69
190 191 1.006805 GACCGATCTGGGATCTGCG 60.007 63.158 8.20 0.00 44.64 5.18
191 192 1.006805 CGACCGATCTGGGATCTGC 60.007 63.158 8.20 0.00 44.64 4.26
192 193 1.006805 GCGACCGATCTGGGATCTG 60.007 63.158 8.20 2.50 44.64 2.90
193 194 2.556459 CGCGACCGATCTGGGATCT 61.556 63.158 0.00 0.00 44.64 2.75
194 195 2.049985 CGCGACCGATCTGGGATC 60.050 66.667 0.00 0.00 44.64 3.36
195 196 4.286320 GCGCGACCGATCTGGGAT 62.286 66.667 12.10 0.00 44.64 3.85
213 214 4.579384 ACCCCAAGGCGTGTGGTG 62.579 66.667 6.80 0.00 36.50 4.17
214 215 4.265056 GACCCCAAGGCGTGTGGT 62.265 66.667 7.36 7.36 41.30 4.16
222 223 4.410400 GTGAGGCGGACCCCAAGG 62.410 72.222 2.29 0.00 36.11 3.61
223 224 4.410400 GGTGAGGCGGACCCCAAG 62.410 72.222 2.29 0.00 36.11 3.61
229 230 4.452733 CTTCGGGGTGAGGCGGAC 62.453 72.222 0.00 0.00 0.00 4.79
230 231 4.689549 TCTTCGGGGTGAGGCGGA 62.690 66.667 0.00 0.00 0.00 5.54
231 232 4.452733 GTCTTCGGGGTGAGGCGG 62.453 72.222 0.00 0.00 0.00 6.13
232 233 4.796231 CGTCTTCGGGGTGAGGCG 62.796 72.222 0.00 0.00 0.00 5.52
234 235 4.796231 CGCGTCTTCGGGGTGAGG 62.796 72.222 0.00 0.00 44.34 3.86
241 242 4.161976 TCTCTCGCGCGTCTTCGG 62.162 66.667 30.98 14.53 37.56 4.30
242 243 2.646244 CTCTCTCGCGCGTCTTCG 60.646 66.667 30.98 14.53 40.37 3.79
243 244 2.277628 CCTCTCTCGCGCGTCTTC 60.278 66.667 30.98 0.00 0.00 2.87
244 245 2.746671 TCCTCTCTCGCGCGTCTT 60.747 61.111 30.98 0.00 0.00 3.01
245 246 2.933878 ATCTCCTCTCTCGCGCGTCT 62.934 60.000 30.98 0.33 0.00 4.18
246 247 2.438385 GATCTCCTCTCTCGCGCGTC 62.438 65.000 30.98 11.97 0.00 5.19
247 248 2.515057 ATCTCCTCTCTCGCGCGT 60.515 61.111 30.98 2.41 0.00 6.01
248 249 2.251075 GATCTCCTCTCTCGCGCG 59.749 66.667 26.76 26.76 0.00 6.86
249 250 2.642700 GGATCTCCTCTCTCGCGC 59.357 66.667 0.00 0.00 0.00 6.86
250 251 2.265182 GGGGATCTCCTCTCTCGCG 61.265 68.421 3.62 0.00 32.35 5.87
251 252 1.906333 GGGGGATCTCCTCTCTCGC 60.906 68.421 12.53 0.00 36.50 5.03
252 253 1.602323 CGGGGGATCTCCTCTCTCG 60.602 68.421 12.53 1.69 43.20 4.04
253 254 1.906333 GCGGGGGATCTCCTCTCTC 60.906 68.421 12.53 0.00 36.50 3.20
254 255 2.200092 GCGGGGGATCTCCTCTCT 59.800 66.667 12.53 0.00 36.50 3.10
255 256 2.920384 GGCGGGGGATCTCCTCTC 60.920 72.222 12.53 0.51 36.50 3.20
256 257 3.767268 TGGCGGGGGATCTCCTCT 61.767 66.667 12.53 0.00 36.50 3.69
257 258 3.551407 GTGGCGGGGGATCTCCTC 61.551 72.222 12.53 3.62 35.95 3.71
319 320 4.144727 TCCTCCTCTCCCTCCGCC 62.145 72.222 0.00 0.00 0.00 6.13
320 321 2.520741 CTCCTCCTCTCCCTCCGC 60.521 72.222 0.00 0.00 0.00 5.54
321 322 2.197324 CCTCCTCCTCTCCCTCCG 59.803 72.222 0.00 0.00 0.00 4.63
322 323 2.015726 TCCCTCCTCCTCTCCCTCC 61.016 68.421 0.00 0.00 0.00 4.30
323 324 1.293683 ACTCCCTCCTCCTCTCCCTC 61.294 65.000 0.00 0.00 0.00 4.30
324 325 0.858139 AACTCCCTCCTCCTCTCCCT 60.858 60.000 0.00 0.00 0.00 4.20
325 326 0.043485 AAACTCCCTCCTCCTCTCCC 59.957 60.000 0.00 0.00 0.00 4.30
326 327 1.199615 CAAACTCCCTCCTCCTCTCC 58.800 60.000 0.00 0.00 0.00 3.71
327 328 0.539518 GCAAACTCCCTCCTCCTCTC 59.460 60.000 0.00 0.00 0.00 3.20
328 329 1.261238 CGCAAACTCCCTCCTCCTCT 61.261 60.000 0.00 0.00 0.00 3.69
329 330 1.219393 CGCAAACTCCCTCCTCCTC 59.781 63.158 0.00 0.00 0.00 3.71
330 331 2.294078 CCGCAAACTCCCTCCTCCT 61.294 63.158 0.00 0.00 0.00 3.69
331 332 2.269241 CCGCAAACTCCCTCCTCC 59.731 66.667 0.00 0.00 0.00 4.30
332 333 2.436824 GCCGCAAACTCCCTCCTC 60.437 66.667 0.00 0.00 0.00 3.71
333 334 4.394712 CGCCGCAAACTCCCTCCT 62.395 66.667 0.00 0.00 0.00 3.69
350 351 4.468689 AGAAACCTAGCCGCCGCC 62.469 66.667 0.00 0.00 34.57 6.13
351 352 3.195698 CAGAAACCTAGCCGCCGC 61.196 66.667 0.00 0.00 0.00 6.53
352 353 2.511600 CCAGAAACCTAGCCGCCG 60.512 66.667 0.00 0.00 0.00 6.46
353 354 2.824489 GCCAGAAACCTAGCCGCC 60.824 66.667 0.00 0.00 0.00 6.13
354 355 2.824489 GGCCAGAAACCTAGCCGC 60.824 66.667 0.00 0.00 35.30 6.53
356 357 2.824489 GCGGCCAGAAACCTAGCC 60.824 66.667 2.24 0.00 42.18 3.93
357 358 2.824489 GGCGGCCAGAAACCTAGC 60.824 66.667 15.62 0.00 0.00 3.42
358 359 2.124695 GGGCGGCCAGAAACCTAG 60.125 66.667 25.33 0.00 0.00 3.02
359 360 4.090588 CGGGCGGCCAGAAACCTA 62.091 66.667 29.19 0.00 0.00 3.08
362 363 4.699522 ACTCGGGCGGCCAGAAAC 62.700 66.667 29.19 2.69 0.00 2.78
363 364 4.388499 GACTCGGGCGGCCAGAAA 62.388 66.667 29.19 8.98 0.00 2.52
397 398 4.065281 AGAAACCCCCTCGCGTCG 62.065 66.667 5.77 0.00 0.00 5.12
398 399 2.434359 CAGAAACCCCCTCGCGTC 60.434 66.667 5.77 0.00 0.00 5.19
399 400 4.016706 CCAGAAACCCCCTCGCGT 62.017 66.667 5.77 0.00 0.00 6.01
400 401 3.702048 TCCAGAAACCCCCTCGCG 61.702 66.667 0.00 0.00 0.00 5.87
401 402 2.046217 GTCCAGAAACCCCCTCGC 60.046 66.667 0.00 0.00 0.00 5.03
402 403 2.264794 CGTCCAGAAACCCCCTCG 59.735 66.667 0.00 0.00 0.00 4.63
403 404 2.669240 CCGTCCAGAAACCCCCTC 59.331 66.667 0.00 0.00 0.00 4.30
404 405 2.933834 CCCGTCCAGAAACCCCCT 60.934 66.667 0.00 0.00 0.00 4.79
405 406 2.931649 TCCCGTCCAGAAACCCCC 60.932 66.667 0.00 0.00 0.00 5.40
406 407 1.916777 TCTCCCGTCCAGAAACCCC 60.917 63.158 0.00 0.00 0.00 4.95
407 408 1.295746 GTCTCCCGTCCAGAAACCC 59.704 63.158 0.00 0.00 0.00 4.11
408 409 0.037232 CTGTCTCCCGTCCAGAAACC 60.037 60.000 0.00 0.00 0.00 3.27
409 410 0.966920 TCTGTCTCCCGTCCAGAAAC 59.033 55.000 0.00 0.00 32.55 2.78
410 411 1.550524 CATCTGTCTCCCGTCCAGAAA 59.449 52.381 0.00 0.00 38.61 2.52
411 412 1.186200 CATCTGTCTCCCGTCCAGAA 58.814 55.000 0.00 0.00 38.61 3.02
412 413 0.331616 TCATCTGTCTCCCGTCCAGA 59.668 55.000 0.00 0.00 39.38 3.86
413 414 1.339610 GATCATCTGTCTCCCGTCCAG 59.660 57.143 0.00 0.00 0.00 3.86
414 415 1.341976 TGATCATCTGTCTCCCGTCCA 60.342 52.381 0.00 0.00 0.00 4.02
415 416 1.403814 TGATCATCTGTCTCCCGTCC 58.596 55.000 0.00 0.00 0.00 4.79
416 417 3.526931 TTTGATCATCTGTCTCCCGTC 57.473 47.619 0.00 0.00 0.00 4.79
417 418 3.600388 GTTTTGATCATCTGTCTCCCGT 58.400 45.455 0.00 0.00 0.00 5.28
418 419 2.604914 CGTTTTGATCATCTGTCTCCCG 59.395 50.000 0.00 0.00 0.00 5.14
419 420 3.861840 TCGTTTTGATCATCTGTCTCCC 58.138 45.455 0.00 0.00 0.00 4.30
420 421 4.872691 ACATCGTTTTGATCATCTGTCTCC 59.127 41.667 0.00 0.00 34.13 3.71
421 422 5.006165 GGACATCGTTTTGATCATCTGTCTC 59.994 44.000 0.00 0.00 34.13 3.36
422 423 4.872691 GGACATCGTTTTGATCATCTGTCT 59.127 41.667 0.00 0.00 34.13 3.41
423 424 4.872691 AGGACATCGTTTTGATCATCTGTC 59.127 41.667 0.00 4.10 34.13 3.51
424 425 4.836825 AGGACATCGTTTTGATCATCTGT 58.163 39.130 0.00 0.00 34.13 3.41
425 426 6.908870 TTAGGACATCGTTTTGATCATCTG 57.091 37.500 0.00 0.00 34.13 2.90
426 427 6.316390 GGTTTAGGACATCGTTTTGATCATCT 59.684 38.462 0.00 0.00 34.13 2.90
427 428 6.487103 GGTTTAGGACATCGTTTTGATCATC 58.513 40.000 0.00 0.00 34.13 2.92
428 429 5.064707 CGGTTTAGGACATCGTTTTGATCAT 59.935 40.000 0.00 0.00 34.13 2.45
429 430 4.390603 CGGTTTAGGACATCGTTTTGATCA 59.609 41.667 0.00 0.00 34.13 2.92
430 431 4.628333 TCGGTTTAGGACATCGTTTTGATC 59.372 41.667 0.00 0.00 34.13 2.92
435 436 5.704053 AGAAAATCGGTTTAGGACATCGTTT 59.296 36.000 0.00 0.00 0.00 3.60
438 439 5.350365 TGAAGAAAATCGGTTTAGGACATCG 59.650 40.000 0.00 0.00 0.00 3.84
445 446 3.435671 ACGCCTGAAGAAAATCGGTTTAG 59.564 43.478 0.00 0.00 0.00 1.85
450 451 1.804151 TCAACGCCTGAAGAAAATCGG 59.196 47.619 0.00 0.00 0.00 4.18
452 453 4.083324 TGACATCAACGCCTGAAGAAAATC 60.083 41.667 0.00 0.00 37.67 2.17
453 454 3.820467 TGACATCAACGCCTGAAGAAAAT 59.180 39.130 0.00 0.00 37.67 1.82
454 455 3.210227 TGACATCAACGCCTGAAGAAAA 58.790 40.909 0.00 0.00 37.67 2.29
459 460 1.344438 AGTCTGACATCAACGCCTGAA 59.656 47.619 10.88 0.00 37.67 3.02
461 462 1.800805 AAGTCTGACATCAACGCCTG 58.199 50.000 10.88 0.00 0.00 4.85
462 463 2.146342 CAAAGTCTGACATCAACGCCT 58.854 47.619 10.88 0.00 0.00 5.52
463 464 1.873591 ACAAAGTCTGACATCAACGCC 59.126 47.619 10.88 0.00 0.00 5.68
472 473 5.008613 TCAGTAATGCCAAACAAAGTCTGAC 59.991 40.000 0.00 0.00 0.00 3.51
475 476 6.655078 ATTCAGTAATGCCAAACAAAGTCT 57.345 33.333 0.00 0.00 0.00 3.24
494 495 4.035558 GTCTTTGCCTCGCATTGATATTCA 59.964 41.667 0.00 0.00 38.76 2.57
535 536 1.284785 TCCCTTAACCTTGCCATCAGG 59.715 52.381 0.00 0.00 38.23 3.86
563 564 5.789521 TCGTCTATTGTGAGGATTGTTGAA 58.210 37.500 0.00 0.00 0.00 2.69
585 586 7.331193 AGACGATGTCAAACAAACTACCTTATC 59.669 37.037 0.00 0.00 34.60 1.75
608 643 1.216710 CCGGAGAAGTCTGCCAGAC 59.783 63.158 17.16 17.16 45.38 3.51
610 645 2.581354 CCCGGAGAAGTCTGCCAG 59.419 66.667 0.73 0.00 0.00 4.85
621 656 2.190578 GCCTGAATCACCCCGGAG 59.809 66.667 0.73 0.00 0.00 4.63
634 669 1.269102 CGTATCAACTACCTCGGCCTG 60.269 57.143 0.00 0.00 0.00 4.85
721 765 3.399797 TACCGCGATTCCACGTCCG 62.400 63.158 8.23 0.00 35.59 4.79
889 960 4.349503 TTCGGTCGACGGGGGAGA 62.350 66.667 21.27 5.94 44.45 3.71
906 978 2.111043 CACCAACTGGCCGACTGT 59.889 61.111 0.00 0.00 39.32 3.55
1319 1411 2.035193 CCACTATCGGATGAGTGTCCTG 59.965 54.545 18.03 6.85 41.28 3.86
1320 1412 2.091830 TCCACTATCGGATGAGTGTCCT 60.092 50.000 18.03 0.00 41.28 3.85
1323 1415 3.322254 GGATTCCACTATCGGATGAGTGT 59.678 47.826 18.03 7.38 41.28 3.55
1333 1425 4.991687 GGTTGAATCGAGGATTCCACTATC 59.008 45.833 16.99 0.00 45.37 2.08
1409 1503 3.926003 CTCGTCTGGAGGCAGCTA 58.074 61.111 0.00 0.00 39.22 3.32
1490 1584 3.678548 ACTTAAAAGAGTCGTTGATCGGC 59.321 43.478 0.00 0.00 45.26 5.54
1491 1585 4.434330 GCACTTAAAAGAGTCGTTGATCGG 60.434 45.833 0.00 0.00 40.32 4.18
1492 1586 4.386049 AGCACTTAAAAGAGTCGTTGATCG 59.614 41.667 0.00 0.00 41.41 3.69
1519 1613 3.790152 TGAATGTGTCCTCGAGATGAG 57.210 47.619 15.71 0.00 44.83 2.90
1520 1614 3.243201 CGATGAATGTGTCCTCGAGATGA 60.243 47.826 15.71 0.00 44.46 2.92
1521 1615 3.048501 CGATGAATGTGTCCTCGAGATG 58.951 50.000 15.71 0.00 44.46 2.90
1522 1616 2.952310 TCGATGAATGTGTCCTCGAGAT 59.048 45.455 15.71 0.00 45.04 2.75
1559 1653 9.500864 ACATTGTTTGTTGCAATTGTTTATTTC 57.499 25.926 0.59 0.00 33.74 2.17
1627 1721 9.013229 AGCTATGACACAAAAATTACTGATTCA 57.987 29.630 0.00 0.00 0.00 2.57
1700 1794 5.822519 TCAACTCTCAAAGCAACATGTTACT 59.177 36.000 11.53 8.31 0.00 2.24
1739 1838 1.445582 GTGGTCGGCGGTGTTCTAG 60.446 63.158 7.21 0.00 0.00 2.43
1767 1869 1.812571 GACGGATGGCAATTCACACTT 59.187 47.619 0.00 0.00 0.00 3.16
1873 1975 2.193536 GGTGAACTGGCGTGGCTTT 61.194 57.895 0.00 0.00 0.00 3.51
1879 1981 2.030274 GCATTTTTAGGTGAACTGGCGT 60.030 45.455 0.00 0.00 0.00 5.68
1909 2011 4.403432 CCAAGACAATATGCAGGGTTGAAT 59.597 41.667 13.43 1.70 0.00 2.57
2006 2110 6.942163 ATATCCTGAGCTACATTACCATGT 57.058 37.500 0.00 0.00 46.07 3.21
2034 2138 8.318412 TGAAAGCCATAATTACTGAAGAGTGTA 58.682 33.333 0.00 0.00 33.21 2.90
2174 2293 6.503560 TTCCTTAAAAGTGAGGAACCTACA 57.496 37.500 0.89 0.00 42.92 2.74
2445 2568 8.509690 GCATGTGATTAGCATAACATCATAGTT 58.490 33.333 0.00 0.00 32.58 2.24
2448 2571 6.941436 TGGCATGTGATTAGCATAACATCATA 59.059 34.615 0.00 0.00 32.58 2.15
2449 2572 5.771165 TGGCATGTGATTAGCATAACATCAT 59.229 36.000 0.00 0.00 32.58 2.45
2522 2648 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
2523 2649 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
2524 2650 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
2525 2651 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
2526 2652 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
2527 2653 8.605746 TCAAAAACGTTCTTATATTATGGGACG 58.394 33.333 0.00 9.33 0.00 4.79
2528 2654 9.712359 GTCAAAAACGTTCTTATATTATGGGAC 57.288 33.333 0.00 0.00 0.00 4.46
2529 2655 9.451002 TGTCAAAAACGTTCTTATATTATGGGA 57.549 29.630 0.00 0.00 0.00 4.37
2530 2656 9.498307 GTGTCAAAAACGTTCTTATATTATGGG 57.502 33.333 0.00 0.00 0.00 4.00
2536 2662 9.485206 AGTGTAGTGTCAAAAACGTTCTTATAT 57.515 29.630 0.00 0.00 0.00 0.86
2537 2663 8.876275 AGTGTAGTGTCAAAAACGTTCTTATA 57.124 30.769 0.00 0.00 0.00 0.98
2538 2664 7.781548 AGTGTAGTGTCAAAAACGTTCTTAT 57.218 32.000 0.00 0.00 0.00 1.73
2539 2665 7.975616 ACTAGTGTAGTGTCAAAAACGTTCTTA 59.024 33.333 0.00 0.00 37.69 2.10
2540 2666 6.815142 ACTAGTGTAGTGTCAAAAACGTTCTT 59.185 34.615 0.00 0.00 37.69 2.52
2541 2667 6.335777 ACTAGTGTAGTGTCAAAAACGTTCT 58.664 36.000 0.00 0.00 37.69 3.01
2542 2668 6.579491 ACTAGTGTAGTGTCAAAAACGTTC 57.421 37.500 0.00 0.00 37.69 3.95
2555 2681 8.732746 AAGAACATTTTTGACACTAGTGTAGT 57.267 30.769 27.98 14.29 45.05 2.73
2563 2689 9.912634 CCACAATATAAGAACATTTTTGACACT 57.087 29.630 0.00 0.00 0.00 3.55
2564 2690 9.139174 CCCACAATATAAGAACATTTTTGACAC 57.861 33.333 0.00 0.00 0.00 3.67
2565 2691 9.083422 TCCCACAATATAAGAACATTTTTGACA 57.917 29.630 0.00 0.00 0.00 3.58
2566 2692 9.353999 GTCCCACAATATAAGAACATTTTTGAC 57.646 33.333 0.00 0.00 0.00 3.18
2567 2693 8.240682 CGTCCCACAATATAAGAACATTTTTGA 58.759 33.333 0.00 0.00 0.00 2.69
2568 2694 7.487829 CCGTCCCACAATATAAGAACATTTTTG 59.512 37.037 0.00 0.00 0.00 2.44
2569 2695 7.394923 TCCGTCCCACAATATAAGAACATTTTT 59.605 33.333 0.00 0.00 0.00 1.94
2570 2696 6.887545 TCCGTCCCACAATATAAGAACATTTT 59.112 34.615 0.00 0.00 0.00 1.82
2571 2697 6.419791 TCCGTCCCACAATATAAGAACATTT 58.580 36.000 0.00 0.00 0.00 2.32
2572 2698 5.996644 TCCGTCCCACAATATAAGAACATT 58.003 37.500 0.00 0.00 0.00 2.71
2573 2699 5.454755 CCTCCGTCCCACAATATAAGAACAT 60.455 44.000 0.00 0.00 0.00 2.71
2574 2700 4.141801 CCTCCGTCCCACAATATAAGAACA 60.142 45.833 0.00 0.00 0.00 3.18
2575 2701 4.377897 CCTCCGTCCCACAATATAAGAAC 58.622 47.826 0.00 0.00 0.00 3.01
2576 2702 3.389983 CCCTCCGTCCCACAATATAAGAA 59.610 47.826 0.00 0.00 0.00 2.52
2577 2703 2.969950 CCCTCCGTCCCACAATATAAGA 59.030 50.000 0.00 0.00 0.00 2.10
2578 2704 2.969950 TCCCTCCGTCCCACAATATAAG 59.030 50.000 0.00 0.00 0.00 1.73
2579 2705 2.969950 CTCCCTCCGTCCCACAATATAA 59.030 50.000 0.00 0.00 0.00 0.98
2580 2706 2.090943 ACTCCCTCCGTCCCACAATATA 60.091 50.000 0.00 0.00 0.00 0.86
2581 2707 1.344087 ACTCCCTCCGTCCCACAATAT 60.344 52.381 0.00 0.00 0.00 1.28
2582 2708 0.042131 ACTCCCTCCGTCCCACAATA 59.958 55.000 0.00 0.00 0.00 1.90
2583 2709 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.000 0.00 0.00 0.00 2.71
2584 2710 0.901580 GTACTCCCTCCGTCCCACAA 60.902 60.000 0.00 0.00 0.00 3.33
2585 2711 1.304713 GTACTCCCTCCGTCCCACA 60.305 63.158 0.00 0.00 0.00 4.17
2586 2712 0.614134 AAGTACTCCCTCCGTCCCAC 60.614 60.000 0.00 0.00 0.00 4.61
2587 2713 1.002069 TAAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
2588 2714 1.689984 CTAAGTACTCCCTCCGTCCC 58.310 60.000 0.00 0.00 0.00 4.46
2589 2715 1.031235 GCTAAGTACTCCCTCCGTCC 58.969 60.000 0.00 0.00 0.00 4.79
2590 2716 1.677052 CAGCTAAGTACTCCCTCCGTC 59.323 57.143 0.00 0.00 0.00 4.79
2591 2717 1.005687 ACAGCTAAGTACTCCCTCCGT 59.994 52.381 0.00 0.00 0.00 4.69
2592 2718 1.765230 ACAGCTAAGTACTCCCTCCG 58.235 55.000 0.00 0.00 0.00 4.63
2593 2719 4.279982 ACTTACAGCTAAGTACTCCCTCC 58.720 47.826 0.00 0.00 40.79 4.30
2648 2774 7.438459 AGCTATGGAGTAACGATGTTGATTAAC 59.562 37.037 0.00 0.00 37.32 2.01
2655 2781 3.133003 AGCAGCTATGGAGTAACGATGTT 59.867 43.478 0.00 0.00 0.00 2.71
2656 2782 2.695666 AGCAGCTATGGAGTAACGATGT 59.304 45.455 0.00 0.00 0.00 3.06
2657 2783 3.055591 CAGCAGCTATGGAGTAACGATG 58.944 50.000 0.00 0.00 0.00 3.84
2658 2784 2.695666 ACAGCAGCTATGGAGTAACGAT 59.304 45.455 0.00 0.00 0.00 3.73
2659 2785 2.100197 ACAGCAGCTATGGAGTAACGA 58.900 47.619 0.00 0.00 0.00 3.85
2660 2786 2.586258 ACAGCAGCTATGGAGTAACG 57.414 50.000 0.00 0.00 0.00 3.18
2661 2787 4.657436 ACTACAGCAGCTATGGAGTAAC 57.343 45.455 13.11 0.00 40.14 2.50
2662 2788 4.202020 CGAACTACAGCAGCTATGGAGTAA 60.202 45.833 14.69 0.00 41.09 2.24
2799 3053 6.705863 AGTTCCTGCAATCATAATTTCTCC 57.294 37.500 0.00 0.00 0.00 3.71
3156 3412 6.143438 CGAAAATTGCTGCTGGATCAATTATC 59.857 38.462 10.62 0.00 38.88 1.75
3183 3439 4.408182 AAGCTCACTACCGAATAGCATT 57.592 40.909 0.00 0.00 35.63 3.56
3754 4010 6.422776 TTTTCCAGACGATTCTAAGAATGC 57.577 37.500 0.00 0.00 0.00 3.56
3767 4023 3.560068 ACAGTAACTGCTTTTTCCAGACG 59.440 43.478 0.00 0.00 34.37 4.18
3798 4055 2.543797 CCCCTGCCAACTTACCCCA 61.544 63.158 0.00 0.00 0.00 4.96
3857 4119 8.862085 GTTAGCAGATAAGAGGGACTATAAAGT 58.138 37.037 0.00 0.00 41.55 2.66
3944 4283 3.445008 ACAGACCAGCTTAGATCTTCCA 58.555 45.455 0.00 0.00 0.00 3.53
4001 4340 7.147655 ACCTATAGCATTGTCATGTACTTCAGT 60.148 37.037 0.00 0.00 32.28 3.41
4044 4383 7.562454 TTAGACAGTTACAAAAAGGTTCAGG 57.438 36.000 0.00 0.00 0.00 3.86
4157 4497 4.142687 ACAACGACAACAGGACAAAAAGAG 60.143 41.667 0.00 0.00 0.00 2.85
4391 4731 2.724174 TCACGTATGCAATCGCGATAAG 59.276 45.455 24.00 18.71 42.97 1.73
4397 4737 2.794910 ACTGTATCACGTATGCAATCGC 59.205 45.455 12.54 0.00 39.24 4.58
4408 4748 2.416547 CCCAAAGAAGCACTGTATCACG 59.583 50.000 0.00 0.00 0.00 4.35
4431 4771 1.391485 GTGCTAGCATGAACACTCACG 59.609 52.381 22.51 0.00 33.30 4.35
4452 4792 6.594744 TCACCAACATGATACTAGCATTCAT 58.405 36.000 0.00 0.00 0.00 2.57
4453 4793 5.988287 TCACCAACATGATACTAGCATTCA 58.012 37.500 0.00 0.00 0.00 2.57
4454 4794 8.607441 TTATCACCAACATGATACTAGCATTC 57.393 34.615 0.00 0.00 39.97 2.67
4455 4795 8.978874 TTTATCACCAACATGATACTAGCATT 57.021 30.769 0.00 0.00 39.97 3.56
4456 4796 8.840321 GTTTTATCACCAACATGATACTAGCAT 58.160 33.333 0.00 0.00 39.97 3.79
4457 4797 8.046708 AGTTTTATCACCAACATGATACTAGCA 58.953 33.333 0.00 0.00 39.97 3.49
4458 4798 8.438676 AGTTTTATCACCAACATGATACTAGC 57.561 34.615 0.00 0.00 39.97 3.42
4459 4799 8.755941 CGAGTTTTATCACCAACATGATACTAG 58.244 37.037 0.00 0.00 39.97 2.57
4460 4800 7.709182 CCGAGTTTTATCACCAACATGATACTA 59.291 37.037 0.00 0.00 39.97 1.82
4461 4801 6.538742 CCGAGTTTTATCACCAACATGATACT 59.461 38.462 0.00 0.00 39.97 2.12
4462 4802 6.315393 ACCGAGTTTTATCACCAACATGATAC 59.685 38.462 0.00 0.00 39.97 2.24
4489 4829 2.942376 CACCTGCAATATACCGCAAGAA 59.058 45.455 1.78 0.00 37.76 2.52
4548 4888 2.976490 GCCCTCAGCACCCATCTGT 61.976 63.158 0.00 0.00 42.97 3.41
4784 5128 1.555075 GTCCTGAAGCACCTGGTATCA 59.445 52.381 0.00 4.05 0.00 2.15
4893 5237 6.944557 TGACATTACTGACACGTGAATTAG 57.055 37.500 25.01 15.68 0.00 1.73
4906 5250 8.671921 AGCTCATTAACTGAAATGACATTACTG 58.328 33.333 0.00 0.00 40.17 2.74
4907 5251 8.798859 AGCTCATTAACTGAAATGACATTACT 57.201 30.769 0.00 0.00 40.17 2.24
4985 5334 9.710900 ATGTTATCTATATTCTTCATGTGCGAA 57.289 29.630 0.00 0.00 0.00 4.70
5139 5488 1.494721 TGGGAGAAAGGAACAGCTGTT 59.505 47.619 31.57 31.57 41.64 3.16
5192 5541 2.311542 TCTGGCCCAAGTCCAATACAAT 59.688 45.455 0.00 0.00 32.41 2.71
5247 5596 6.013206 TCAGGTAAGAGTTTTAACTATGGCCA 60.013 38.462 8.56 8.56 39.88 5.36
5276 5625 1.786441 TGTGTGGGAGGAGGGAAAAAT 59.214 47.619 0.00 0.00 0.00 1.82
5284 5633 1.051812 AGTGTCTTGTGTGGGAGGAG 58.948 55.000 0.00 0.00 0.00 3.69
5289 5638 2.158900 AGTTCTCAGTGTCTTGTGTGGG 60.159 50.000 0.00 0.00 0.00 4.61
5317 5666 3.552132 TGGACTCTAGCACAACAACAA 57.448 42.857 0.00 0.00 0.00 2.83
5319 5668 5.063944 CACATATGGACTCTAGCACAACAAC 59.936 44.000 7.80 0.00 0.00 3.32
5415 5764 1.281925 ATCAAGGCACCGGATCCCTT 61.282 55.000 9.46 13.79 39.46 3.95
5478 5827 2.879907 GCACCATGCACAAGCGAT 59.120 55.556 0.00 0.00 44.26 4.58
5749 6102 0.095245 CGACTGTTCATCGCGCAATT 59.905 50.000 8.75 0.00 31.96 2.32
5770 6132 3.565482 GGACATCAACTTCTTTGCACAGA 59.435 43.478 0.00 0.00 34.88 3.41
5806 6168 5.475719 GGGCCCTAAAAATGTACAGTTTTC 58.524 41.667 30.69 19.05 39.07 2.29
5810 6172 2.652857 AGGGGCCCTAAAAATGTACAGT 59.347 45.455 27.62 0.00 28.47 3.55
5811 6173 3.023832 CAGGGGCCCTAAAAATGTACAG 58.976 50.000 28.28 3.92 29.64 2.74
5812 6174 2.380590 ACAGGGGCCCTAAAAATGTACA 59.619 45.455 28.28 0.00 29.64 2.90
5813 6175 3.095912 ACAGGGGCCCTAAAAATGTAC 57.904 47.619 28.28 0.00 29.64 2.90
5814 6176 3.835395 CAAACAGGGGCCCTAAAAATGTA 59.165 43.478 28.28 0.00 29.64 2.29
5815 6177 2.637382 CAAACAGGGGCCCTAAAAATGT 59.363 45.455 28.28 16.52 29.64 2.71
5816 6178 2.903135 TCAAACAGGGGCCCTAAAAATG 59.097 45.455 28.28 19.19 29.64 2.32
5817 6179 3.268034 TCAAACAGGGGCCCTAAAAAT 57.732 42.857 28.28 7.27 29.64 1.82
5887 6249 1.518302 GCACATTGCATGCCCATCA 59.482 52.632 16.68 0.00 44.26 3.07
5888 6250 4.431035 GCACATTGCATGCCCATC 57.569 55.556 16.68 0.00 44.26 3.51
5945 6307 2.879026 TGTTGCTTTATGCCACACGTAA 59.121 40.909 0.00 0.00 41.54 3.18
5946 6308 2.495084 TGTTGCTTTATGCCACACGTA 58.505 42.857 0.00 0.00 41.54 3.57
5957 6319 1.000283 CGTTTGGCCCATGTTGCTTTA 60.000 47.619 0.00 0.00 0.00 1.85
5970 6332 3.550842 GGATGATAATGAAGGCGTTTGGC 60.551 47.826 0.00 0.00 42.51 4.52
5971 6333 3.631686 TGGATGATAATGAAGGCGTTTGG 59.368 43.478 0.00 0.00 0.00 3.28
5981 6343 6.765512 TGACGTAGCAAAATGGATGATAATGA 59.234 34.615 0.00 0.00 0.00 2.57
5986 6348 5.589855 TGATTGACGTAGCAAAATGGATGAT 59.410 36.000 0.00 0.00 0.00 2.45
6008 6370 4.879197 AGATTCCGCTGATGTCATATGA 57.121 40.909 0.00 0.00 0.00 2.15
6009 6371 5.936686 AAAGATTCCGCTGATGTCATATG 57.063 39.130 0.00 0.00 0.00 1.78
6011 6373 5.066375 CCAAAAAGATTCCGCTGATGTCATA 59.934 40.000 0.00 0.00 0.00 2.15
6087 6451 7.062488 TCGAGACGAATTTAATGATGAAAACGA 59.938 33.333 10.55 0.00 31.06 3.85
6107 6471 6.967767 TCTAATTTTGAAGATCTCGTCGAGAC 59.032 38.462 26.46 18.95 41.76 3.36
6109 6473 7.114247 GGATCTAATTTTGAAGATCTCGTCGAG 59.886 40.741 16.33 16.33 44.94 4.04
6162 6527 3.235369 GCAACTTTTGGCCCCCAA 58.765 55.556 0.00 0.00 42.29 4.12
6197 6562 9.967346 GGTTGCTTTAACTAGAAGAAAAAGAAT 57.033 29.630 0.00 0.00 39.31 2.40
6198 6563 8.962679 TGGTTGCTTTAACTAGAAGAAAAAGAA 58.037 29.630 0.00 0.00 39.31 2.52
6199 6564 8.514330 TGGTTGCTTTAACTAGAAGAAAAAGA 57.486 30.769 0.00 0.00 39.31 2.52
6200 6565 9.750125 AATGGTTGCTTTAACTAGAAGAAAAAG 57.250 29.630 0.00 0.26 39.31 2.27
6201 6566 9.528018 CAATGGTTGCTTTAACTAGAAGAAAAA 57.472 29.630 0.00 0.00 39.31 1.94
6222 6587 7.148540 CCATGAAAAGTAGTTGAAATGCAATGG 60.149 37.037 0.00 0.00 39.03 3.16
6282 6647 9.405587 CATGAAGTAAATTTGTCGTGGTTAATT 57.594 29.630 0.00 0.00 0.00 1.40
6284 6649 7.228906 TCCATGAAGTAAATTTGTCGTGGTTAA 59.771 33.333 24.43 12.86 44.30 2.01
6286 6651 5.533154 TCCATGAAGTAAATTTGTCGTGGTT 59.467 36.000 24.43 4.44 44.30 3.67
6292 6657 6.698766 GCCATGATCCATGAAGTAAATTTGTC 59.301 38.462 8.38 0.00 43.81 3.18
6369 6734 6.909550 AACCTGCCATAGTTCATACAAAAA 57.090 33.333 0.00 0.00 0.00 1.94
6370 6735 6.909550 AAACCTGCCATAGTTCATACAAAA 57.090 33.333 0.00 0.00 0.00 2.44
6371 6736 6.266558 ACAAAACCTGCCATAGTTCATACAAA 59.733 34.615 0.00 0.00 0.00 2.83
6372 6737 5.772672 ACAAAACCTGCCATAGTTCATACAA 59.227 36.000 0.00 0.00 0.00 2.41
6373 6738 5.182950 CACAAAACCTGCCATAGTTCATACA 59.817 40.000 0.00 0.00 0.00 2.29
6374 6739 5.640732 CACAAAACCTGCCATAGTTCATAC 58.359 41.667 0.00 0.00 0.00 2.39
6375 6740 4.157656 GCACAAAACCTGCCATAGTTCATA 59.842 41.667 0.00 0.00 0.00 2.15
6376 6741 3.056607 GCACAAAACCTGCCATAGTTCAT 60.057 43.478 0.00 0.00 0.00 2.57
6377 6742 2.295909 GCACAAAACCTGCCATAGTTCA 59.704 45.455 0.00 0.00 0.00 3.18
6378 6743 2.295909 TGCACAAAACCTGCCATAGTTC 59.704 45.455 0.00 0.00 33.36 3.01
6379 6744 2.315176 TGCACAAAACCTGCCATAGTT 58.685 42.857 0.00 0.00 33.36 2.24
6380 6745 1.993956 TGCACAAAACCTGCCATAGT 58.006 45.000 0.00 0.00 33.36 2.12
6381 6746 2.231964 ACATGCACAAAACCTGCCATAG 59.768 45.455 0.00 0.00 33.36 2.23
6382 6747 2.246469 ACATGCACAAAACCTGCCATA 58.754 42.857 0.00 0.00 33.36 2.74
6383 6748 1.050204 ACATGCACAAAACCTGCCAT 58.950 45.000 0.00 0.00 33.36 4.40
6384 6749 1.697284 TACATGCACAAAACCTGCCA 58.303 45.000 0.00 0.00 33.36 4.92
6385 6750 2.230992 TGATACATGCACAAAACCTGCC 59.769 45.455 0.00 0.00 33.36 4.85
6386 6751 3.574284 TGATACATGCACAAAACCTGC 57.426 42.857 0.00 0.00 35.03 4.85
6387 6752 4.426416 CCATGATACATGCACAAAACCTG 58.574 43.478 0.00 0.00 0.00 4.00
6388 6753 3.119029 GCCATGATACATGCACAAAACCT 60.119 43.478 0.00 0.00 0.00 3.50
6389 6754 3.189285 GCCATGATACATGCACAAAACC 58.811 45.455 0.00 0.00 0.00 3.27
6390 6755 3.847542 TGCCATGATACATGCACAAAAC 58.152 40.909 0.00 0.00 0.00 2.43
6391 6756 4.532314 TTGCCATGATACATGCACAAAA 57.468 36.364 12.45 0.49 32.63 2.44
6392 6757 4.532314 TTTGCCATGATACATGCACAAA 57.468 36.364 18.07 18.07 32.63 2.83
6393 6758 4.739587 ATTTGCCATGATACATGCACAA 57.260 36.364 0.00 9.32 32.63 3.33
6394 6759 4.739587 AATTTGCCATGATACATGCACA 57.260 36.364 0.00 4.45 32.63 4.57
6395 6760 7.536895 TTTAAATTTGCCATGATACATGCAC 57.463 32.000 0.00 2.20 32.63 4.57
6396 6761 9.828039 TTATTTAAATTTGCCATGATACATGCA 57.172 25.926 5.91 0.00 0.00 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.