Multiple sequence alignment - TraesCS7D01G248900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G248900 chr7D 100.000 5182 0 0 1 5182 220291203 220286022 0.000000e+00 9570
1 TraesCS7D01G248900 chr7A 94.189 4629 167 52 606 5182 232598058 232593480 0.000000e+00 6964
2 TraesCS7D01G248900 chr7B 97.526 1859 42 2 2673 4530 179248506 179250361 0.000000e+00 3175
3 TraesCS7D01G248900 chr7B 92.269 1966 77 28 706 2639 179246588 179248510 0.000000e+00 2719
4 TraesCS7D01G248900 chr7B 94.711 605 29 3 4 607 729258363 729257761 0.000000e+00 937
5 TraesCS7D01G248900 chr7B 95.826 575 17 4 4612 5179 179250372 179250946 0.000000e+00 922
6 TraesCS7D01G248900 chr7B 93.793 580 30 4 29 607 221316672 221316098 0.000000e+00 867
7 TraesCS7D01G248900 chr7B 90.718 571 49 3 1 568 4401168 4401737 0.000000e+00 758
8 TraesCS7D01G248900 chr7B 94.211 190 11 0 3799 3988 443646512 443646323 1.830000e-74 291
9 TraesCS7D01G248900 chr2B 95.868 605 21 4 1 604 75698211 75698812 0.000000e+00 976
10 TraesCS7D01G248900 chr2B 96.354 576 17 4 32 606 52529564 52528992 0.000000e+00 944
11 TraesCS7D01G248900 chr2B 94.408 608 24 5 9 607 568823166 568822560 0.000000e+00 926
12 TraesCS7D01G248900 chr2B 90.365 602 52 4 7 604 92546864 92546265 0.000000e+00 785
13 TraesCS7D01G248900 chr2B 83.067 626 75 20 1 604 62761958 62761342 1.640000e-149 540
14 TraesCS7D01G248900 chr2B 90.096 313 31 0 3793 4105 447815475 447815163 1.740000e-109 407
15 TraesCS7D01G248900 chr2B 92.949 156 11 0 449 604 463356401 463356556 1.450000e-55 228
16 TraesCS7D01G248900 chr2B 91.824 159 13 0 449 607 799259597 799259755 6.750000e-54 222
17 TraesCS7D01G248900 chr3B 95.303 511 14 1 96 606 239250939 239251439 0.000000e+00 802
18 TraesCS7D01G248900 chr3B 85.678 391 24 17 2121 2480 12027103 12027492 2.930000e-102 383
19 TraesCS7D01G248900 chr3B 96.250 80 3 0 2047 2126 12026997 12027076 1.170000e-26 132
20 TraesCS7D01G248900 chr5B 94.851 505 26 0 100 604 371908574 371909078 0.000000e+00 789
21 TraesCS7D01G248900 chr5B 85.422 391 25 12 2121 2480 6849507 6849118 1.360000e-100 377
22 TraesCS7D01G248900 chr5B 95.000 80 4 0 2047 2126 6849613 6849534 5.450000e-25 126
23 TraesCS7D01G248900 chr6D 89.520 458 20 10 2050 2480 226683360 226682904 5.860000e-154 555
24 TraesCS7D01G248900 chr4B 91.935 310 25 0 3793 4102 605162688 605162997 7.970000e-118 435
25 TraesCS7D01G248900 chr6A 89.457 313 33 0 3793 4105 449815563 449815875 3.760000e-106 396
26 TraesCS7D01G248900 chr6A 86.118 389 24 17 2121 2480 61396393 61396006 4.860000e-105 392
27 TraesCS7D01G248900 chr6A 85.678 391 24 12 2121 2480 607431966 607432355 2.930000e-102 383
28 TraesCS7D01G248900 chr6A 87.220 313 33 5 3793 4105 22031165 22030860 2.970000e-92 350
29 TraesCS7D01G248900 chr6A 96.250 80 3 0 2047 2126 607431860 607431939 1.170000e-26 132
30 TraesCS7D01G248900 chr6A 96.053 76 3 0 2047 2122 61396499 61396424 1.960000e-24 124
31 TraesCS7D01G248900 chr5A 85.678 391 24 12 2121 2480 324949117 324949506 2.930000e-102 383
32 TraesCS7D01G248900 chr5A 96.250 80 3 0 2047 2126 324949011 324949090 1.170000e-26 132
33 TraesCS7D01G248900 chr1B 85.492 386 24 13 2121 2475 608360717 608361101 1.760000e-99 374
34 TraesCS7D01G248900 chr1B 96.250 80 3 0 2047 2126 608360611 608360690 1.170000e-26 132
35 TraesCS7D01G248900 chr4A 92.411 224 16 1 3792 4015 564740352 564740574 8.370000e-83 318
36 TraesCS7D01G248900 chrUn 95.238 84 4 0 2397 2480 434647764 434647681 3.260000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G248900 chr7D 220286022 220291203 5181 True 9570 9570 100.000 1 5182 1 chr7D.!!$R1 5181
1 TraesCS7D01G248900 chr7A 232593480 232598058 4578 True 6964 6964 94.189 606 5182 1 chr7A.!!$R1 4576
2 TraesCS7D01G248900 chr7B 179246588 179250946 4358 False 2272 3175 95.207 706 5179 3 chr7B.!!$F2 4473
3 TraesCS7D01G248900 chr7B 729257761 729258363 602 True 937 937 94.711 4 607 1 chr7B.!!$R3 603
4 TraesCS7D01G248900 chr7B 221316098 221316672 574 True 867 867 93.793 29 607 1 chr7B.!!$R1 578
5 TraesCS7D01G248900 chr7B 4401168 4401737 569 False 758 758 90.718 1 568 1 chr7B.!!$F1 567
6 TraesCS7D01G248900 chr2B 75698211 75698812 601 False 976 976 95.868 1 604 1 chr2B.!!$F1 603
7 TraesCS7D01G248900 chr2B 52528992 52529564 572 True 944 944 96.354 32 606 1 chr2B.!!$R1 574
8 TraesCS7D01G248900 chr2B 568822560 568823166 606 True 926 926 94.408 9 607 1 chr2B.!!$R5 598
9 TraesCS7D01G248900 chr2B 92546265 92546864 599 True 785 785 90.365 7 604 1 chr2B.!!$R3 597
10 TraesCS7D01G248900 chr2B 62761342 62761958 616 True 540 540 83.067 1 604 1 chr2B.!!$R2 603
11 TraesCS7D01G248900 chr3B 239250939 239251439 500 False 802 802 95.303 96 606 1 chr3B.!!$F1 510
12 TraesCS7D01G248900 chr5B 371908574 371909078 504 False 789 789 94.851 100 604 1 chr5B.!!$F1 504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
803 851 0.040336 GATCATGCAATCAGCTGGCG 60.040 55.000 15.13 3.64 45.94 5.69 F
1851 1926 0.324943 GTAGGCAGAGGAAGGTTGCA 59.675 55.000 0.00 0.00 39.54 4.08 F
1866 1941 0.389817 TTGCAGAGGATGTCGGTTCG 60.390 55.000 0.00 0.00 0.00 3.95 F
2097 2172 1.303970 GGAAGCTGCTGCCCTTCTT 60.304 57.895 16.40 10.01 40.80 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1917 1992 0.543749 CCCTCTCAAAATCCTCGGCT 59.456 55.000 0.0 0.0 0.00 5.52 R
3111 3225 2.185310 AATCTGGAGACCACCGCACC 62.185 60.000 0.0 0.0 0.00 5.01 R
3782 3896 2.749621 AGCTTTCTCCAATTTAGCACGG 59.250 45.455 0.0 0.0 34.37 4.94 R
4218 4332 4.500205 GGGGCAAAACTTTACCAAGTGTAC 60.500 45.833 0.0 0.0 42.89 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
235 245 1.477558 CCATTCCCCTCCCGAGATTTG 60.478 57.143 0.00 0.00 0.00 2.32
260 270 1.443407 CGGATGAGCCTTCGGATGT 59.557 57.895 0.00 0.00 0.00 3.06
587 629 4.856182 AGTCCCTAAACCAATAAGTCCCTT 59.144 41.667 0.00 0.00 0.00 3.95
607 649 5.128008 CCCTTGAAACAAACACCCTCTAAAA 59.872 40.000 0.00 0.00 0.00 1.52
608 650 6.351456 CCCTTGAAACAAACACCCTCTAAAAA 60.351 38.462 0.00 0.00 0.00 1.94
609 651 6.533723 CCTTGAAACAAACACCCTCTAAAAAC 59.466 38.462 0.00 0.00 0.00 2.43
610 652 5.968254 TGAAACAAACACCCTCTAAAAACC 58.032 37.500 0.00 0.00 0.00 3.27
611 653 5.717654 TGAAACAAACACCCTCTAAAAACCT 59.282 36.000 0.00 0.00 0.00 3.50
612 654 5.592104 AACAAACACCCTCTAAAAACCTG 57.408 39.130 0.00 0.00 0.00 4.00
613 655 4.606210 ACAAACACCCTCTAAAAACCTGT 58.394 39.130 0.00 0.00 0.00 4.00
614 656 4.401202 ACAAACACCCTCTAAAAACCTGTG 59.599 41.667 0.00 0.00 0.00 3.66
615 657 3.945640 ACACCCTCTAAAAACCTGTGT 57.054 42.857 0.00 0.00 0.00 3.72
616 658 3.551846 ACACCCTCTAAAAACCTGTGTG 58.448 45.455 0.00 0.00 34.47 3.82
617 659 3.053917 ACACCCTCTAAAAACCTGTGTGT 60.054 43.478 0.00 0.00 34.47 3.72
618 660 3.315191 CACCCTCTAAAAACCTGTGTGTG 59.685 47.826 0.00 0.00 0.00 3.82
662 705 6.007076 TCAAGTTTGGATTGCTTACCACATA 58.993 36.000 0.00 0.00 35.81 2.29
663 706 6.150976 TCAAGTTTGGATTGCTTACCACATAG 59.849 38.462 0.00 0.00 35.81 2.23
664 707 5.570320 AGTTTGGATTGCTTACCACATAGT 58.430 37.500 0.00 0.00 35.81 2.12
665 708 6.717289 AGTTTGGATTGCTTACCACATAGTA 58.283 36.000 0.00 0.00 35.81 1.82
668 711 6.247229 TGGATTGCTTACCACATAGTATGT 57.753 37.500 10.10 10.10 46.22 2.29
671 714 6.202954 GGATTGCTTACCACATAGTATGTCAC 59.797 42.308 13.00 0.80 42.70 3.67
672 715 5.669164 TGCTTACCACATAGTATGTCACA 57.331 39.130 13.00 3.19 42.70 3.58
675 718 5.466728 GCTTACCACATAGTATGTCACATGG 59.533 44.000 13.00 12.90 42.70 3.66
686 729 7.615582 AGTATGTCACATGGTTGTTTATGAG 57.384 36.000 0.00 0.00 32.34 2.90
688 731 6.899393 ATGTCACATGGTTGTTTATGAGTT 57.101 33.333 0.00 0.00 32.34 3.01
689 732 6.312399 TGTCACATGGTTGTTTATGAGTTC 57.688 37.500 0.00 0.00 32.34 3.01
693 736 7.920682 GTCACATGGTTGTTTATGAGTTCTTTT 59.079 33.333 0.00 0.00 32.34 2.27
695 738 8.542132 CACATGGTTGTTTATGAGTTCTTTTTG 58.458 33.333 0.00 0.00 32.34 2.44
712 757 6.991938 TCTTTTTGGGGATGTTGTTTATGAG 58.008 36.000 0.00 0.00 0.00 2.90
803 851 0.040336 GATCATGCAATCAGCTGGCG 60.040 55.000 15.13 3.64 45.94 5.69
817 865 1.841450 CTGGCGTCTTCGTCTAATCC 58.159 55.000 0.00 0.00 42.59 3.01
840 888 0.986874 CGCACGCGACAAAAGTTCAG 60.987 55.000 15.93 0.00 42.83 3.02
854 902 1.846124 TTCAGCCCGAGTTTCCCCT 60.846 57.895 0.00 0.00 0.00 4.79
897 945 4.955925 ATTATGATCCGCTAGAGTCGAG 57.044 45.455 0.00 0.00 0.00 4.04
898 946 2.552599 ATGATCCGCTAGAGTCGAGA 57.447 50.000 4.21 0.00 0.00 4.04
979 1027 4.496336 AGCCGCAGCAGATTCCCC 62.496 66.667 0.00 0.00 43.56 4.81
1543 1618 4.379499 CCGATGCTTCTACATATGACGCTA 60.379 45.833 10.38 0.00 31.26 4.26
1639 1714 2.219080 TGCCAATTCTCTGGATGCAA 57.781 45.000 0.00 0.00 38.96 4.08
1691 1766 1.740025 GGCGAAAGAAGAAGATGGTGG 59.260 52.381 0.00 0.00 0.00 4.61
1794 1869 2.223525 GCTTGATTCAATCCAGCAGAGC 60.224 50.000 16.75 3.65 44.79 4.09
1851 1926 0.324943 GTAGGCAGAGGAAGGTTGCA 59.675 55.000 0.00 0.00 39.54 4.08
1857 1932 1.558756 CAGAGGAAGGTTGCAGAGGAT 59.441 52.381 0.00 0.00 0.00 3.24
1866 1941 0.389817 TTGCAGAGGATGTCGGTTCG 60.390 55.000 0.00 0.00 0.00 3.95
1911 1986 3.991924 GAGGGAGCTGGAGGAGGCA 62.992 68.421 0.00 0.00 0.00 4.75
1917 1992 2.586245 CTGGAGGAGGCATGCGAA 59.414 61.111 12.44 0.00 0.00 4.70
2097 2172 1.303970 GGAAGCTGCTGCCCTTCTT 60.304 57.895 16.40 10.01 40.80 2.52
2141 2216 2.802816 AGCTGTGCGTTCTTTTACTCAG 59.197 45.455 0.00 0.00 0.00 3.35
2177 2252 9.944376 AACTGTAATGTCAATGTTAGATGTACT 57.056 29.630 0.00 0.00 0.00 2.73
2215 2295 8.088365 AGGCATCCTTTTAAATAACACTTTGAC 58.912 33.333 0.00 0.00 0.00 3.18
2247 2327 4.439289 GCTTTCATTGCATCAACCCTAGTC 60.439 45.833 0.00 0.00 0.00 2.59
2394 2487 6.881602 TGTATTGTGTTGATGGCACTATTACA 59.118 34.615 0.00 0.00 37.70 2.41
2464 2577 4.275689 ACTGAAATGTTCGAACAGCATGAA 59.724 37.500 32.19 16.28 43.04 2.57
2570 2684 3.137544 ACCAGTGTCCATGTTTACCTGAA 59.862 43.478 0.00 0.00 0.00 3.02
2597 2711 6.708054 CAGAGAATGGTTTGTCTGTTAAGAGT 59.292 38.462 0.00 0.00 44.30 3.24
2807 2921 2.017623 GCCACTGAGCATGCTGATTCT 61.018 52.381 28.27 0.00 0.00 2.40
2960 3074 6.407074 GGCTAGAAGGTTCAGTAGAGCATTTA 60.407 42.308 0.00 0.00 29.07 1.40
3089 3203 4.436242 AGCTGAAAACAATGCTCAGATG 57.564 40.909 10.57 0.00 39.15 2.90
3111 3225 3.265791 CAGGAGGTTCAAGAAAGGATCG 58.734 50.000 0.00 0.00 0.00 3.69
3303 3417 5.107133 GGGAAATCATCAATGCTTGTTCTG 58.893 41.667 0.00 0.00 0.00 3.02
3615 3729 6.742082 GCAGGAGATATCTTCAAAGAGAGCAT 60.742 42.308 13.70 0.00 35.28 3.79
3782 3896 6.368516 CACTGAATTCTGAGAAGGAAGAACTC 59.631 42.308 18.13 0.00 35.34 3.01
4218 4332 1.825090 TAGACATGGCTGTGCTTTGG 58.175 50.000 12.69 0.00 35.14 3.28
4576 4699 9.733556 ACTGTTACAAATAAATCAGTGGATGTA 57.266 29.630 0.00 0.00 35.32 2.29
4635 4758 3.709653 TCAGTAGACTGGTTTCTGGTGTT 59.290 43.478 9.73 0.00 43.91 3.32
4636 4759 4.058817 CAGTAGACTGGTTTCTGGTGTTC 58.941 47.826 1.47 0.00 40.20 3.18
5071 5199 2.679837 CGTTGCTGCTAATGATGGAACT 59.320 45.455 0.00 0.00 0.00 3.01
5073 5201 3.632643 TGCTGCTAATGATGGAACTCA 57.367 42.857 0.00 0.00 0.00 3.41
5129 5257 3.827008 AGTGATAGCAATGTGACGGAT 57.173 42.857 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 0.805322 GAGCACGGTCTCTGAGCATG 60.805 60.000 0.00 0.00 0.00 4.06
184 194 0.042188 CTCAACAGCAACGTCAACGG 60.042 55.000 7.53 0.00 44.95 4.44
260 270 3.394274 TCAATTCCCCTTGTCTCAACAGA 59.606 43.478 0.00 0.00 36.57 3.41
587 629 5.717654 AGGTTTTTAGAGGGTGTTTGTTTCA 59.282 36.000 0.00 0.00 0.00 2.69
607 649 3.440173 CAGAGACAAAACACACACAGGTT 59.560 43.478 0.00 0.00 0.00 3.50
608 650 3.009723 CAGAGACAAAACACACACAGGT 58.990 45.455 0.00 0.00 0.00 4.00
609 651 3.009723 ACAGAGACAAAACACACACAGG 58.990 45.455 0.00 0.00 0.00 4.00
610 652 4.685169 AACAGAGACAAAACACACACAG 57.315 40.909 0.00 0.00 0.00 3.66
611 653 5.446143 AAAACAGAGACAAAACACACACA 57.554 34.783 0.00 0.00 0.00 3.72
636 679 6.007076 TGTGGTAAGCAATCCAAACTTGATA 58.993 36.000 0.00 0.00 35.38 2.15
656 699 5.185454 ACAACCATGTGACATACTATGTGG 58.815 41.667 6.41 0.00 39.33 4.17
662 705 7.168219 ACTCATAAACAACCATGTGACATACT 58.832 34.615 0.00 0.00 40.46 2.12
663 706 7.377766 ACTCATAAACAACCATGTGACATAC 57.622 36.000 0.00 0.00 40.46 2.39
664 707 7.882791 AGAACTCATAAACAACCATGTGACATA 59.117 33.333 0.00 0.00 40.46 2.29
665 708 6.716628 AGAACTCATAAACAACCATGTGACAT 59.283 34.615 0.00 0.00 40.46 3.06
668 711 7.581213 AAAGAACTCATAAACAACCATGTGA 57.419 32.000 0.00 0.00 40.46 3.58
671 714 7.171337 CCCAAAAAGAACTCATAAACAACCATG 59.829 37.037 0.00 0.00 0.00 3.66
672 715 7.216494 CCCAAAAAGAACTCATAAACAACCAT 58.784 34.615 0.00 0.00 0.00 3.55
675 718 6.811954 TCCCCAAAAAGAACTCATAAACAAC 58.188 36.000 0.00 0.00 0.00 3.32
686 729 7.213678 TCATAAACAACATCCCCAAAAAGAAC 58.786 34.615 0.00 0.00 0.00 3.01
688 731 6.553100 ACTCATAAACAACATCCCCAAAAAGA 59.447 34.615 0.00 0.00 0.00 2.52
689 732 6.758254 ACTCATAAACAACATCCCCAAAAAG 58.242 36.000 0.00 0.00 0.00 2.27
693 736 5.640147 AGAACTCATAAACAACATCCCCAA 58.360 37.500 0.00 0.00 0.00 4.12
695 738 5.710099 TCAAGAACTCATAAACAACATCCCC 59.290 40.000 0.00 0.00 0.00 4.81
712 757 6.311445 AGTGTGTCATCATCGTTATCAAGAAC 59.689 38.462 0.00 0.00 0.00 3.01
803 851 2.355132 TGCGAGAGGATTAGACGAAGAC 59.645 50.000 0.00 0.00 0.00 3.01
840 888 3.645268 ATGCAGGGGAAACTCGGGC 62.645 63.158 0.00 0.00 36.66 6.13
854 902 2.033911 TGCTTTGGCTCCGATGCA 59.966 55.556 11.42 11.42 37.91 3.96
897 945 1.316706 ACGGGTGCTGCTCTAGACTC 61.317 60.000 0.00 0.00 0.00 3.36
898 946 0.900647 AACGGGTGCTGCTCTAGACT 60.901 55.000 0.00 0.00 0.00 3.24
1470 1545 0.591741 GTACAGTAGCCGTAGCAGCG 60.592 60.000 0.00 0.00 43.56 5.18
1543 1618 0.583136 TGGATGGGGATAGGGGGAAT 59.417 55.000 0.00 0.00 0.00 3.01
1639 1714 3.181493 GCATCCAAAGAATTGACGCTGAT 60.181 43.478 0.00 0.00 38.94 2.90
1851 1926 2.893398 GCCGAACCGACATCCTCT 59.107 61.111 0.00 0.00 0.00 3.69
1877 1952 1.467920 CCTCTCCAAATCCTTGTGCC 58.532 55.000 0.00 0.00 0.00 5.01
1911 1986 0.734889 CAAAATCCTCGGCTTCGCAT 59.265 50.000 0.00 0.00 0.00 4.73
1917 1992 0.543749 CCCTCTCAAAATCCTCGGCT 59.456 55.000 0.00 0.00 0.00 5.52
1926 2001 0.544357 TCCTCTCGGCCCTCTCAAAA 60.544 55.000 0.00 0.00 0.00 2.44
2097 2172 4.340666 TGATTTACCTTTGCAAACTGCTCA 59.659 37.500 8.05 4.31 45.31 4.26
2141 2216 7.329226 ACATTGACATTACAGTTTTATGCAAGC 59.671 33.333 0.00 0.00 0.00 4.01
2177 2252 3.744940 AGGATGCCTGAATTCAAGGAA 57.255 42.857 21.24 14.61 29.57 3.36
2215 2295 7.170320 GGTTGATGCAATGAAAGCCTATTTATG 59.830 37.037 0.00 0.00 0.00 1.90
2247 2327 7.319646 ACATGTTTGAGTAGCTCTCTAGAAAG 58.680 38.462 12.45 0.00 43.13 2.62
2371 2459 7.109501 ACTGTAATAGTGCCATCAACACAATA 58.890 34.615 0.00 0.00 40.59 1.90
2394 2487 5.387113 TTGGAGTATTATGCCAATGGACT 57.613 39.130 2.05 0.00 36.80 3.85
2464 2577 7.503566 TCAAATCATCCTTCTCTTTCACAACTT 59.496 33.333 0.00 0.00 0.00 2.66
2521 2634 8.512956 GTCCTTCGTAATCATATAGAACTGCTA 58.487 37.037 0.00 0.00 0.00 3.49
2597 2711 7.841729 TGCCAGTAAATTTCATAAGGGGAATAA 59.158 33.333 0.00 0.00 0.00 1.40
2666 2780 9.769093 AAAAATTGTCGCAACATAGATTACTAC 57.231 29.630 0.00 0.00 34.73 2.73
2807 2921 5.574891 TTTCTTCTGCTTGTTTGCTTACA 57.425 34.783 0.00 0.00 0.00 2.41
2960 3074 8.314751 TCCTTTTCTCTCTTATCGTCTTCAATT 58.685 33.333 0.00 0.00 0.00 2.32
3089 3203 2.568623 TCCTTTCTTGAACCTCCTGC 57.431 50.000 0.00 0.00 0.00 4.85
3111 3225 2.185310 AATCTGGAGACCACCGCACC 62.185 60.000 0.00 0.00 0.00 5.01
3416 3530 3.087031 CCTGAGCATTTGGATGTCTTGT 58.913 45.455 0.00 0.00 35.63 3.16
3756 3870 5.815233 TCTTCCTTCTCAGAATTCAGTGT 57.185 39.130 8.44 0.00 0.00 3.55
3782 3896 2.749621 AGCTTTCTCCAATTTAGCACGG 59.250 45.455 0.00 0.00 34.37 4.94
4218 4332 4.500205 GGGGCAAAACTTTACCAAGTGTAC 60.500 45.833 0.00 0.00 42.89 2.90
4576 4699 7.508687 ACCAAAAGTCTTGCCAAAAAGAATAT 58.491 30.769 0.00 0.00 37.90 1.28
5071 5199 7.964559 CGCATTATCAAGAAGAAACAAGAATGA 59.035 33.333 0.00 0.00 0.00 2.57
5073 5201 6.749118 GCGCATTATCAAGAAGAAACAAGAAT 59.251 34.615 0.30 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.