AutoCloner

Multiple sequence alignment - TraesCS7D01G248800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G248800	chr7D	100.000	3003	0	0	1	3003	220287317	220284315	0.000000e+00	5546
1	TraesCS7D01G248800	chr7D	100.000	369	0	0	3225	3593	220284093	220283725	0.000000e+00	682
2	TraesCS7D01G248800	chr7D	85.328	259	6	9	2757	3003	220280551	220280789	4.640000e-59	239
3	TraesCS7D01G248800	chr7A	94.995	2777	101	19	1	2759	232594785	232592029	0.000000e+00	4324
4	TraesCS7D01G248800	chr7A	96.730	367	12	0	3227	3593	638853398	638853764	2.370000e-171	612
5	TraesCS7D01G248800	chr7A	85.603	257	4	7	2760	3003	638861482	638861246	4.640000e-59	239
6	TraesCS7D01G248800	chr7A	86.429	140	15	4	2760	2897	626414454	626414317	2.230000e-32	150
7	TraesCS7D01G248800	chr7B	94.385	2048	89	16	726	2759	179250372	179252407	0.000000e+00	3121
8	TraesCS7D01G248800	chr7B	96.589	645	18	2	1	644	179249720	179250361	0.000000e+00	1066
9	TraesCS7D01G248800	chr7B	97.275	367	10	0	3227	3593	670245684	670246050	1.100000e-174	623
10	TraesCS7D01G248800	chr7B	85.156	256	6	5	2760	3003	670245406	670245641	2.160000e-57	233
11	TraesCS7D01G248800	chr7B	96.040	101	4	0	2	102	443646423	443646323	7.980000e-37	165
12	TraesCS7D01G248800	chr2D	98.638	367	5	0	3227	3593	544196241	544196607	0.000000e+00	651
13	TraesCS7D01G248800	chr5D	98.103	369	7	0	3225	3593	385976233	385975865	0.000000e+00	643
14	TraesCS7D01G248800	chr5D	86.275	255	4	6	2760	3003	385970171	385970405	7.700000e-62	248
15	TraesCS7D01G248800	chr5D	85.490	255	5	6	2761	3003	385976507	385976273	1.670000e-58	237
16	TraesCS7D01G248800	chr5D	83.673	245	34	5	2760	3003	42030415	42030176	3.610000e-55	226
17	TraesCS7D01G248800	chr5D	98.969	97	1	0	2907	3003	42023108	42023204	1.330000e-39	174
18	TraesCS7D01G248800	chr5D	87.143	140	14	4	2760	2897	118833034	118833171	4.800000e-34	156
19	TraesCS7D01G248800	chr3D	97.826	368	4	2	3227	3593	316827649	316828013	1.820000e-177	632
20	TraesCS7D01G248800	chr3D	86.047	258	4	6	2758	3003	316827369	316827606	7.700000e-62	248
21	TraesCS7D01G248800	chr3D	83.268	257	9	5	2759	3003	454991149	454990915	4.700000e-49	206
22	TraesCS7D01G248800	chr1D	97.814	366	7	1	3228	3593	262704782	262704418	6.550000e-177	630
23	TraesCS7D01G248800	chr1D	84.270	267	8	4	2749	3003	262697634	262697878	2.790000e-56	230
24	TraesCS7D01G248800	chr3A	97.275	367	10	0	3227	3593	552543883	552544249	1.100000e-174	623
25	TraesCS7D01G248800	chr3A	97.011	368	9	2	3228	3593	716653612	716653979	5.100000e-173	617
26	TraesCS7D01G248800	chr5A	96.739	368	10	2	3228	3593	555244736	555244369	2.370000e-171	612
27	TraesCS7D01G248800	chr5A	85.547	256	5	2	2760	3003	555230865	555230630	4.640000e-59	239
28	TraesCS7D01G248800	chr4B	92.093	215	17	0	2	216	605162783	605162997	1.620000e-78	303
29	TraesCS7D01G248800	chr4B	92.667	150	11	0	2760	2909	606850592	606850443	2.170000e-52	217
30	TraesCS7D01G248800	chr2B	88.991	218	24	0	2	219	447815380	447815163	1.640000e-68	270
31	TraesCS7D01G248800	chr2A	85.547	256	4	2	2760	3003	203318045	203317811	1.670000e-58	237
32	TraesCS7D01G248800	chr3B	85.214	257	6	6	2759	3003	129255002	129255238	6.000000e-58	235
33	TraesCS7D01G248800	chr3B	85.156	256	7	3	2760	3003	794286579	794286815	2.160000e-57	233
34	TraesCS7D01G248800	chrUn	84.375	256	8	2	2760	3003	63501607	63501842	4.670000e-54	222
35	TraesCS7D01G248800	chrUn	84.375	256	8	2	2760	3003	377381861	377382096	4.670000e-54	222
36	TraesCS7D01G248800	chr6D	83.265	245	31	8	2760	3003	79100722	79100957	2.170000e-52	217
37	TraesCS7D01G248800	chr4A	91.339	127	10	1	3	129	564740449	564740574	4.770000e-39	172

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G248800	chr7D	220283725	220287317	3592	True	3114.0	5546	100.0000	1	3593	2	chr7D.!!$R1	3592
1	TraesCS7D01G248800	chr7A	232592029	232594785	2756	True	4324.0	4324	94.9950	1	2759	1	chr7A.!!$R1	2758
2	TraesCS7D01G248800	chr7B	179249720	179252407	2687	False	2093.5	3121	95.4870	1	2759	2	chr7B.!!$F1	2758
3	TraesCS7D01G248800	chr7B	670245406	670246050	644	False	428.0	623	91.2155	2760	3593	2	chr7B.!!$F2	833
4	TraesCS7D01G248800	chr5D	385975865	385976507	642	True	440.0	643	91.7965	2761	3593	2	chr5D.!!$R2	832
5	TraesCS7D01G248800	chr3D	316827369	316828013	644	False	440.0	632	91.9365	2758	3593	2	chr3D.!!$F1	835

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
332	333	1.825090	TAGACATGGCTGTGCTTTGG	58.175	50.0	12.69	0.0	35.14	3.28	F
1845	1866	0.511653	GGTTTTCTTCTCGACGTGCC	59.488	55.0	0.00	0.0	0.00	5.01	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2079	2102	0.103208	GTGTCATGGAGAGGGTAGCG	59.897	60.000	0.00	0.0	0.0	4.26	R
2942	2982	1.887242	GCCGTGTGAACAGTGCTGA	60.887	57.895	6.17	0.0	0.0	4.26	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
332	333	1.825090	TAGACATGGCTGTGCTTTGG	58.175	50.000	12.69	0.00	35.14	3.28
690	700	9.733556	ACTGTTACAAATAAATCAGTGGATGTA	57.266	29.630	0.00	0.00	35.32	2.29
749	759	3.709653	TCAGTAGACTGGTTTCTGGTGTT	59.290	43.478	9.73	0.00	43.91	3.32
750	760	4.058817	CAGTAGACTGGTTTCTGGTGTTC	58.941	47.826	1.47	0.00	40.20	3.18
1185	1200	2.679837	CGTTGCTGCTAATGATGGAACT	59.320	45.455	0.00	0.00	0.00	3.01
1187	1202	3.632643	TGCTGCTAATGATGGAACTCA	57.367	42.857	0.00	0.00	0.00	3.41
1243	1258	3.827008	AGTGATAGCAATGTGACGGAT	57.173	42.857	0.00	0.00	0.00	4.18
1477	1494	2.746362	CACTTCACTGCCCATCTTCTTC	59.254	50.000	0.00	0.00	0.00	2.87
1483	1502	2.291217	ACTGCCCATCTTCTTCTTTCCC	60.291	50.000	0.00	0.00	0.00	3.97
1484	1503	1.340017	TGCCCATCTTCTTCTTTCCCG	60.340	52.381	0.00	0.00	0.00	5.14
1489	1508	4.564821	CCCATCTTCTTCTTTCCCGTGTTA	60.565	45.833	0.00	0.00	0.00	2.41
1522	1541	1.841556	TCCTGTGGTGGTGGGTCTC	60.842	63.158	0.00	0.00	0.00	3.36
1591	1611	0.647410	CAGCGATAAACGGCACTCTG	59.353	55.000	0.00	0.00	42.83	3.35
1684	1704	1.758280	AGGCTGAGAGATGAAGCTGAG	59.242	52.381	0.00	0.00	37.12	3.35
1845	1866	0.511653	GGTTTTCTTCTCGACGTGCC	59.488	55.000	0.00	0.00	0.00	5.01
1902	1923	2.376518	TGAGAAATCAGCCTGGGAGTTT	59.623	45.455	0.00	0.00	0.00	2.66
1923	1944	2.290260	TGCCAAGGAGAACAACATCGAT	60.290	45.455	0.00	0.00	0.00	3.59
1929	1950	3.109619	GGAGAACAACATCGATCTCGTC	58.890	50.000	0.00	0.00	39.33	4.20
1986	2007	2.231380	CCCTGTGTTAGGCCCCACT	61.231	63.158	16.18	0.00	45.89	4.00
1989	2010	2.129555	CTGTGTTAGGCCCCACTGCT	62.130	60.000	16.18	0.00	32.76	4.24
2054	2077	4.937620	GCTGGTCTGATTTGTTCATGTCTA	59.062	41.667	0.00	0.00	32.72	2.59
2057	2080	5.248248	TGGTCTGATTTGTTCATGTCTAGGA	59.752	40.000	0.00	0.00	32.72	2.94
2059	2082	6.351371	GGTCTGATTTGTTCATGTCTAGGAGA	60.351	42.308	0.00	0.00	32.72	3.71
2079	2102	0.680921	TGCCAGCCTGAAGTTATGCC	60.681	55.000	0.00	0.00	0.00	4.40
2088	2111	1.138266	TGAAGTTATGCCGCTACCCTC	59.862	52.381	0.00	0.00	0.00	4.30
2090	2113	1.041437	AGTTATGCCGCTACCCTCTC	58.959	55.000	0.00	0.00	0.00	3.20
2094	2117	1.762522	ATGCCGCTACCCTCTCCATG	61.763	60.000	0.00	0.00	0.00	3.66
2102	2125	1.734655	ACCCTCTCCATGACACACTT	58.265	50.000	0.00	0.00	0.00	3.16
2105	2128	3.846588	ACCCTCTCCATGACACACTTAAT	59.153	43.478	0.00	0.00	0.00	1.40
2106	2129	5.030147	ACCCTCTCCATGACACACTTAATA	58.970	41.667	0.00	0.00	0.00	0.98
2107	2130	5.487488	ACCCTCTCCATGACACACTTAATAA	59.513	40.000	0.00	0.00	0.00	1.40
2108	2131	6.051717	CCCTCTCCATGACACACTTAATAAG	58.948	44.000	0.00	0.00	0.00	1.73
2109	2132	6.051717	CCTCTCCATGACACACTTAATAAGG	58.948	44.000	4.92	0.00	0.00	2.69
2111	2134	6.640518	TCTCCATGACACACTTAATAAGGTC	58.359	40.000	4.92	3.43	0.00	3.85
2112	2135	5.741011	TCCATGACACACTTAATAAGGTCC	58.259	41.667	4.92	0.00	0.00	4.46
2113	2136	5.487488	TCCATGACACACTTAATAAGGTCCT	59.513	40.000	4.92	0.00	0.00	3.85
2114	2137	5.586243	CCATGACACACTTAATAAGGTCCTG	59.414	44.000	4.92	5.81	0.00	3.86
2117	2140	7.016153	TGACACACTTAATAAGGTCCTGAAT	57.984	36.000	4.92	0.00	0.00	2.57
2127	2150	6.780457	ATAAGGTCCTGAATTTGAACCATG	57.220	37.500	0.00	0.00	0.00	3.66
2128	2151	2.827921	AGGTCCTGAATTTGAACCATGC	59.172	45.455	0.00	0.00	0.00	4.06
2147	2170	2.646175	CGCAGGGGAGACGGAGAAA	61.646	63.158	0.00	0.00	0.00	2.52
2227	2250	2.507769	GGTCTACGAAACCGCCGG	60.508	66.667	0.00	0.00	0.00	6.13
2228	2251	2.259511	GTCTACGAAACCGCCGGT	59.740	61.111	1.02	1.02	37.65	5.28
2389	2414	3.663025	TCGCTGTTGATCATCTGAACAA	58.337	40.909	13.19	0.00	35.01	2.83
2392	2417	4.142752	CGCTGTTGATCATCTGAACAATGT	60.143	41.667	13.19	0.00	38.70	2.71
2412	2437	3.813166	TGTCAGCCTTAGTTTGTTAGCAC	59.187	43.478	0.00	0.00	0.00	4.40
2419	2444	7.012704	CAGCCTTAGTTTGTTAGCACATATCAT	59.987	37.037	0.00	0.00	31.06	2.45
2430	2455	8.615211	TGTTAGCACATATCATCATTCTGAAAC	58.385	33.333	0.00	0.00	0.00	2.78
2432	2457	7.493743	AGCACATATCATCATTCTGAAACTC	57.506	36.000	0.00	0.00	0.00	3.01
2559	2584	1.289066	CTCGGTGGAGTCGCTCAAA	59.711	57.895	8.71	0.00	35.48	2.69
2685	2713	9.624697	CTCTAGAAGCATTTCAGCTATTACTAG	57.375	37.037	0.00	0.00	45.89	2.57
2686	2714	9.137459	TCTAGAAGCATTTCAGCTATTACTAGT	57.863	33.333	0.00	0.00	45.89	2.57
2689	2717	8.919145	AGAAGCATTTCAGCTATTACTAGTACT	58.081	33.333	0.91	0.00	45.89	2.73
2692	2720	9.357161	AGCATTTCAGCTATTACTAGTACTAGT	57.643	33.333	32.39	32.39	44.50	2.57
2717	2745	2.813754	TGAGAAGAATGCGTTCCCTTTG	59.186	45.455	15.10	0.00	34.81	2.77
2725	2753	2.920524	TGCGTTCCCTTTGTTGTCTTA	58.079	42.857	0.00	0.00	0.00	2.10
2727	2755	3.314080	TGCGTTCCCTTTGTTGTCTTAAG	59.686	43.478	0.00	0.00	0.00	1.85
2740	2768	2.884639	TGTCTTAAGTTCTGCTTTGGGC	59.115	45.455	1.63	0.00	38.57	5.36
2875	2915	3.886123	ACACTAGTTGCTTGTTTGGACT	58.114	40.909	0.00	0.00	0.00	3.85
2916	2956	2.678470	GGGGGCCCGTTTATGACA	59.322	61.111	17.79	0.00	0.00	3.58
2917	2957	1.000646	GGGGGCCCGTTTATGACAA	60.001	57.895	17.79	0.00	0.00	3.18
2918	2958	1.035385	GGGGGCCCGTTTATGACAAG	61.035	60.000	17.79	0.00	0.00	3.16
2919	2959	1.035385	GGGGCCCGTTTATGACAAGG	61.035	60.000	17.79	0.00	0.00	3.61
2920	2960	1.035385	GGGCCCGTTTATGACAAGGG	61.035	60.000	5.69	0.00	44.72	3.95
2922	2962	3.184736	CCCGTTTATGACAAGGGGG	57.815	57.895	3.64	0.00	44.93	5.40
2942	2982	4.771356	CCGCATCCGTCGACGTGT	62.771	66.667	33.49	20.16	37.74	4.49
3548	3592	0.105039	GACTCCGATTTCGAGGGCAT	59.895	55.000	0.67	0.00	43.02	4.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
332	333	4.500205	GGGGCAAAACTTTACCAAGTGTAC	60.500	45.833	0.00	0.00	42.89	2.90
690	700	7.508687	ACCAAAAGTCTTGCCAAAAAGAATAT	58.491	30.769	0.00	0.00	37.90	1.28
1185	1200	7.964559	CGCATTATCAAGAAGAAACAAGAATGA	59.035	33.333	0.00	0.00	0.00	2.57
1187	1202	6.749118	GCGCATTATCAAGAAGAAACAAGAAT	59.251	34.615	0.30	0.00	0.00	2.40
1390	1407	0.745845	GGCGATGCAGTGTGGAAGAT	60.746	55.000	0.00	0.00	0.00	2.40
1477	1494	5.993441	TCTTTTACCTTCTAACACGGGAAAG	59.007	40.000	0.00	0.00	32.53	2.62
1483	1502	6.090898	CAGGACATCTTTTACCTTCTAACACG	59.909	42.308	0.00	0.00	0.00	4.49
1484	1503	6.935208	ACAGGACATCTTTTACCTTCTAACAC	59.065	38.462	0.00	0.00	0.00	3.32
1489	1508	4.351111	ACCACAGGACATCTTTTACCTTCT	59.649	41.667	0.00	0.00	0.00	2.85
1548	1568	4.182693	TCAAGCATTTCTTCCTGCAATG	57.817	40.909	0.00	0.00	40.88	2.82
1591	1611	0.390340	TGCAGGATCTCAGCACGTTC	60.390	55.000	3.71	0.00	32.55	3.95
1753	1773	9.729023	CATAAAAACGAAGCATGGTATTCATTA	57.271	29.630	0.00	0.00	32.92	1.90
1845	1866	1.069204	ACAGCGTACCATATCTGCCAG	59.931	52.381	0.00	0.00	0.00	4.85
1902	1923	1.071542	TCGATGTTGTTCTCCTTGGCA	59.928	47.619	0.00	0.00	0.00	4.92
1947	1968	0.325296	AGAGGTTAGGGCCGATGACA	60.325	55.000	0.00	0.00	0.00	3.58
1986	2007	0.694771	AGCCAAGGACATCTGAAGCA	59.305	50.000	0.00	0.00	0.00	3.91
1989	2010	2.957402	ACAAGCCAAGGACATCTGAA	57.043	45.000	0.00	0.00	0.00	3.02
2054	2077	0.913451	ACTTCAGGCTGGCATCTCCT	60.913	55.000	15.73	0.00	35.26	3.69
2057	2080	2.928334	CATAACTTCAGGCTGGCATCT	58.072	47.619	15.73	0.00	0.00	2.90
2059	2082	1.396653	GCATAACTTCAGGCTGGCAT	58.603	50.000	15.73	1.53	0.00	4.40
2079	2102	0.103208	GTGTCATGGAGAGGGTAGCG	59.897	60.000	0.00	0.00	0.00	4.26
2088	2111	5.817816	GGACCTTATTAAGTGTGTCATGGAG	59.182	44.000	11.16	0.00	0.00	3.86
2090	2113	5.586243	CAGGACCTTATTAAGTGTGTCATGG	59.414	44.000	13.55	0.00	32.63	3.66
2094	2117	7.923414	AATTCAGGACCTTATTAAGTGTGTC	57.077	36.000	0.00	3.45	0.00	3.67
2102	2125	7.147915	GCATGGTTCAAATTCAGGACCTTATTA	60.148	37.037	9.14	0.00	0.00	0.98
2105	2128	4.462483	GCATGGTTCAAATTCAGGACCTTA	59.538	41.667	9.14	0.00	0.00	2.69
2106	2129	3.259123	GCATGGTTCAAATTCAGGACCTT	59.741	43.478	9.14	1.63	0.00	3.50
2107	2130	2.827921	GCATGGTTCAAATTCAGGACCT	59.172	45.455	9.14	0.00	0.00	3.85
2108	2131	2.094026	GGCATGGTTCAAATTCAGGACC	60.094	50.000	0.00	2.09	0.00	4.46
2109	2132	2.415893	CGGCATGGTTCAAATTCAGGAC	60.416	50.000	0.00	0.00	0.00	3.85
2111	2134	1.736696	GCGGCATGGTTCAAATTCAGG	60.737	52.381	0.00	0.00	0.00	3.86
2112	2135	1.067706	TGCGGCATGGTTCAAATTCAG	60.068	47.619	0.00	0.00	0.00	3.02
2113	2136	0.964700	TGCGGCATGGTTCAAATTCA	59.035	45.000	0.00	0.00	0.00	2.57
2114	2137	1.632422	CTGCGGCATGGTTCAAATTC	58.368	50.000	1.75	0.00	0.00	2.17
2117	2140	2.274645	CCCTGCGGCATGGTTCAAA	61.275	57.895	15.25	0.00	0.00	2.69
2147	2170	1.879575	TCCTCCCGAAGATGGTGAAT	58.120	50.000	0.00	0.00	0.00	2.57
2227	2250	0.107165	GATGTACCTCCCCTTGGCAC	60.107	60.000	0.00	0.00	0.00	5.01
2228	2251	0.253160	AGATGTACCTCCCCTTGGCA	60.253	55.000	0.00	0.00	0.00	4.92
2285	2308	1.438222	GAACCGTTTCGCGAGCAAC	60.438	57.895	9.59	11.40	44.77	4.17
2389	2414	4.455877	GTGCTAACAAACTAAGGCTGACAT	59.544	41.667	0.00	0.00	0.00	3.06
2392	2417	4.079980	TGTGCTAACAAACTAAGGCTGA	57.920	40.909	0.00	0.00	31.82	4.26
2685	2713	6.496571	ACGCATTCTTCTCATGTACTAGTAC	58.503	40.000	23.58	23.58	36.63	2.73
2686	2714	6.694877	ACGCATTCTTCTCATGTACTAGTA	57.305	37.500	0.00	0.00	0.00	1.82
2687	2715	5.584253	ACGCATTCTTCTCATGTACTAGT	57.416	39.130	0.00	0.00	0.00	2.57
2688	2716	5.460419	GGAACGCATTCTTCTCATGTACTAG	59.540	44.000	0.00	0.00	34.98	2.57
2689	2717	5.348986	GGAACGCATTCTTCTCATGTACTA	58.651	41.667	0.00	0.00	34.98	1.82
2690	2718	4.184629	GGAACGCATTCTTCTCATGTACT	58.815	43.478	0.00	0.00	34.98	2.73
2691	2719	3.309954	GGGAACGCATTCTTCTCATGTAC	59.690	47.826	0.00	0.00	34.98	2.90
2692	2720	3.197766	AGGGAACGCATTCTTCTCATGTA	59.802	43.478	0.00	0.00	34.98	2.29
2717	2745	4.793028	GCCCAAAGCAGAACTTAAGACAAC	60.793	45.833	10.09	0.00	42.97	3.32
2740	2768	2.554142	TCGCAGAGTGGCAATAGAATG	58.446	47.619	0.00	0.00	0.00	2.67
2875	2915	6.202937	CCTTGTCATAAACGCACTTAAAACA	58.797	36.000	0.00	0.00	0.00	2.83
2925	2965	4.771356	ACACGTCGACGGATGCGG	62.771	66.667	37.89	22.19	44.95	5.69
2926	2966	3.238241	GACACGTCGACGGATGCG	61.238	66.667	37.89	23.10	44.95	4.73
2927	2967	2.126618	TGACACGTCGACGGATGC	60.127	61.111	37.89	24.45	44.95	3.91
2942	2982	1.887242	GCCGTGTGAACAGTGCTGA	60.887	57.895	6.17	0.00	0.00	4.26
3224	3264	3.721706	GAGTGAGGGCTGGGGGTG	61.722	72.222	0.00	0.00	0.00	4.61
3225	3265	3.933542	GAGAGTGAGGGCTGGGGGT	62.934	68.421	0.00	0.00	0.00	4.95
3288	3332	3.866582	GAGATGTGGGAGGGGGCG	61.867	72.222	0.00	0.00	0.00	6.13
3289	3333	3.493303	GGAGATGTGGGAGGGGGC	61.493	72.222	0.00	0.00	0.00	5.80
3290	3334	3.164269	CGGAGATGTGGGAGGGGG	61.164	72.222	0.00	0.00	0.00	5.40
3548	3592	4.462508	TTGCACAAAACATCAGGTTCAA	57.537	36.364	0.00	0.00	39.29	2.69

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.