Multiple sequence alignment - TraesCS7D01G248700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G248700 chr7D 100.000 2327 0 0 878 3204 220284093 220281767 0.000000e+00 4298
1 TraesCS7D01G248700 chr7D 100.000 656 0 0 1 656 220284970 220284315 0.000000e+00 1212
2 TraesCS7D01G248700 chr7D 85.328 259 6 9 410 656 220280551 220280789 4.130000e-59 239
3 TraesCS7D01G248700 chr2D 97.578 1569 17 6 880 2428 544196241 544197808 0.000000e+00 2667
4 TraesCS7D01G248700 chr1D 96.881 1571 21 10 881 2431 262704782 262703220 0.000000e+00 2604
5 TraesCS7D01G248700 chr1D 84.270 267 8 4 402 656 262697634 262697878 2.490000e-56 230
6 TraesCS7D01G248700 chr3A 96.488 1566 32 8 880 2425 552543883 552545445 0.000000e+00 2566
7 TraesCS7D01G248700 chr3A 95.214 1567 30 8 881 2425 716653612 716655155 0.000000e+00 2436
8 TraesCS7D01G248700 chr7B 96.303 1569 38 5 880 2428 670245684 670247252 0.000000e+00 2558
9 TraesCS7D01G248700 chr7B 91.325 415 25 6 1 412 179252001 179252407 1.000000e-154 556
10 TraesCS7D01G248700 chr7B 85.156 256 6 5 413 656 670245406 670245641 1.920000e-57 233
11 TraesCS7D01G248700 chr3D 95.489 1574 50 4 878 2431 454990875 454989303 0.000000e+00 2494
12 TraesCS7D01G248700 chr3D 97.459 787 11 2 2418 3204 39877096 39876319 0.000000e+00 1334
13 TraesCS7D01G248700 chr3D 98.217 673 12 0 2532 3204 454986119 454985447 0.000000e+00 1177
14 TraesCS7D01G248700 chr3D 86.047 258 4 6 411 656 316827369 316827606 6.860000e-62 248
15 TraesCS7D01G248700 chr3D 83.268 257 9 5 412 656 454991149 454990915 4.190000e-49 206
16 TraesCS7D01G248700 chr7A 95.338 1566 32 7 880 2425 638853398 638854942 0.000000e+00 2449
17 TraesCS7D01G248700 chr7A 93.964 1574 63 8 878 2431 501145808 501144247 0.000000e+00 2351
18 TraesCS7D01G248700 chr7A 96.320 788 25 2 2418 3204 466705141 466704357 0.000000e+00 1291
19 TraesCS7D01G248700 chr7A 94.790 787 38 2 2418 3204 322558379 322559162 0.000000e+00 1223
20 TraesCS7D01G248700 chr7A 91.063 414 22 6 1 412 232592429 232592029 2.170000e-151 545
21 TraesCS7D01G248700 chr7A 85.603 257 4 7 413 656 638861482 638861246 4.130000e-59 239
22 TraesCS7D01G248700 chr7A 86.429 140 15 4 413 550 626414454 626414317 1.990000e-32 150
23 TraesCS7D01G248700 chr5A 94.723 1573 38 11 881 2431 555244736 555243187 0.000000e+00 2403
24 TraesCS7D01G248700 chr5A 85.547 256 5 2 413 656 555230865 555230630 4.130000e-59 239
25 TraesCS7D01G248700 chr6D 94.370 1563 57 8 880 2413 79106666 79105106 0.000000e+00 2370
26 TraesCS7D01G248700 chr6D 83.265 245 31 8 413 656 79100722 79100957 1.940000e-52 217
27 TraesCS7D01G248700 chr5D 93.994 1565 63 8 878 2413 42030136 42028574 0.000000e+00 2340
28 TraesCS7D01G248700 chr5D 97.967 787 12 2 2418 3204 385972247 385971465 0.000000e+00 1362
29 TraesCS7D01G248700 chr5D 96.696 787 23 2 2418 3204 42025027 42024244 0.000000e+00 1306
30 TraesCS7D01G248700 chr5D 86.275 255 4 6 413 656 385970171 385970405 6.860000e-62 248
31 TraesCS7D01G248700 chr5D 85.490 255 5 6 414 656 385976507 385976273 1.490000e-58 237
32 TraesCS7D01G248700 chr5D 83.673 245 34 5 413 656 42030415 42030176 3.220000e-55 226
33 TraesCS7D01G248700 chr5D 98.969 97 1 0 560 656 42023108 42023204 1.180000e-39 174
34 TraesCS7D01G248700 chr5D 87.143 140 14 4 413 550 118833034 118833171 4.280000e-34 156
35 TraesCS7D01G248700 chr1A 93.355 1505 71 6 938 2413 290557247 290558751 0.000000e+00 2198
36 TraesCS7D01G248700 chr2A 96.066 788 27 2 2418 3204 751034439 751033655 0.000000e+00 1280
37 TraesCS7D01G248700 chr2A 85.547 256 4 2 413 656 203318045 203317811 1.490000e-58 237
38 TraesCS7D01G248700 chr3B 95.426 787 18 4 2418 3204 794291548 794292316 0.000000e+00 1238
39 TraesCS7D01G248700 chr3B 94.821 753 18 5 880 1612 129255281 129256032 0.000000e+00 1155
40 TraesCS7D01G248700 chr3B 85.214 257 6 6 412 656 129255002 129255238 5.340000e-58 235
41 TraesCS7D01G248700 chr3B 85.156 256 7 3 413 656 794286579 794286815 1.920000e-57 233
42 TraesCS7D01G248700 chr1B 94.790 787 37 2 2418 3204 407897524 407896742 0.000000e+00 1223
43 TraesCS7D01G248700 chr5B 94.032 754 42 1 2418 3171 696696290 696697040 0.000000e+00 1140
44 TraesCS7D01G248700 chrUn 84.375 256 8 2 413 656 63501607 63501842 4.160000e-54 222
45 TraesCS7D01G248700 chrUn 84.375 256 8 2 413 656 377381861 377382096 4.160000e-54 222
46 TraesCS7D01G248700 chr4B 92.667 150 11 0 413 562 606850592 606850443 1.940000e-52 217


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G248700 chr7D 220281767 220284970 3203 True 2755.000000 4298 100.000000 1 3204 2 chr7D.!!$R1 3203
1 TraesCS7D01G248700 chr2D 544196241 544197808 1567 False 2667.000000 2667 97.578000 880 2428 1 chr2D.!!$F1 1548
2 TraesCS7D01G248700 chr1D 262703220 262704782 1562 True 2604.000000 2604 96.881000 881 2431 1 chr1D.!!$R1 1550
3 TraesCS7D01G248700 chr3A 552543883 552545445 1562 False 2566.000000 2566 96.488000 880 2425 1 chr3A.!!$F1 1545
4 TraesCS7D01G248700 chr3A 716653612 716655155 1543 False 2436.000000 2436 95.214000 881 2425 1 chr3A.!!$F2 1544
5 TraesCS7D01G248700 chr7B 670245406 670247252 1846 False 1395.500000 2558 90.729500 413 2428 2 chr7B.!!$F2 2015
6 TraesCS7D01G248700 chr3D 39876319 39877096 777 True 1334.000000 1334 97.459000 2418 3204 1 chr3D.!!$R1 786
7 TraesCS7D01G248700 chr3D 454985447 454991149 5702 True 1292.333333 2494 92.324667 412 3204 3 chr3D.!!$R2 2792
8 TraesCS7D01G248700 chr7A 638853398 638854942 1544 False 2449.000000 2449 95.338000 880 2425 1 chr7A.!!$F2 1545
9 TraesCS7D01G248700 chr7A 501144247 501145808 1561 True 2351.000000 2351 93.964000 878 2431 1 chr7A.!!$R3 1553
10 TraesCS7D01G248700 chr7A 466704357 466705141 784 True 1291.000000 1291 96.320000 2418 3204 1 chr7A.!!$R2 786
11 TraesCS7D01G248700 chr7A 322558379 322559162 783 False 1223.000000 1223 94.790000 2418 3204 1 chr7A.!!$F1 786
12 TraesCS7D01G248700 chr5A 555243187 555244736 1549 True 2403.000000 2403 94.723000 881 2431 1 chr5A.!!$R2 1550
13 TraesCS7D01G248700 chr6D 79105106 79106666 1560 True 2370.000000 2370 94.370000 880 2413 1 chr6D.!!$R1 1533
14 TraesCS7D01G248700 chr5D 385971465 385972247 782 True 1362.000000 1362 97.967000 2418 3204 1 chr5D.!!$R1 786
15 TraesCS7D01G248700 chr5D 42024244 42030415 6171 True 1290.666667 2340 91.454333 413 3204 3 chr5D.!!$R3 2791
16 TraesCS7D01G248700 chr1A 290557247 290558751 1504 False 2198.000000 2198 93.355000 938 2413 1 chr1A.!!$F1 1475
17 TraesCS7D01G248700 chr2A 751033655 751034439 784 True 1280.000000 1280 96.066000 2418 3204 1 chr2A.!!$R2 786
18 TraesCS7D01G248700 chr3B 794291548 794292316 768 False 1238.000000 1238 95.426000 2418 3204 1 chr3B.!!$F2 786
19 TraesCS7D01G248700 chr3B 129255002 129256032 1030 False 695.000000 1155 90.017500 412 1612 2 chr3B.!!$F3 1200
20 TraesCS7D01G248700 chr1B 407896742 407897524 782 True 1223.000000 1223 94.790000 2418 3204 1 chr1B.!!$R1 786
21 TraesCS7D01G248700 chr5B 696696290 696697040 750 False 1140.000000 1140 94.032000 2418 3171 1 chr5B.!!$F1 753

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
131 132 0.032267 GGGAGCAGACGTATGGCTAC 59.968 60.0 12.8 10.55 38.15 3.58 F
304 305 0.036010 AAGAAGATGAGGCCGTGGTG 60.036 55.0 0.0 0.00 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2122 2200 1.005097 TCAAGCTCATCAATGTGGGCT 59.995 47.619 4.73 4.73 33.58 5.19 R
2526 6604 3.335356 AAGATGGGCAGGTGGAGCG 62.335 63.158 0.00 0.00 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.980698 CCGGAAGCATATACATCATCATC 57.019 43.478 0.00 0.00 0.00 2.92
23 24 4.505556 CCGGAAGCATATACATCATCATCG 59.494 45.833 0.00 0.00 0.00 3.84
24 25 4.026228 CGGAAGCATATACATCATCATCGC 60.026 45.833 0.00 0.00 0.00 4.58
25 26 5.114780 GGAAGCATATACATCATCATCGCT 58.885 41.667 0.00 0.00 0.00 4.93
26 27 5.006455 GGAAGCATATACATCATCATCGCTG 59.994 44.000 0.00 0.00 0.00 5.18
27 28 5.082251 AGCATATACATCATCATCGCTGT 57.918 39.130 0.00 0.00 0.00 4.40
28 29 5.485620 AGCATATACATCATCATCGCTGTT 58.514 37.500 0.00 0.00 0.00 3.16
29 30 5.350640 AGCATATACATCATCATCGCTGTTG 59.649 40.000 0.00 0.00 0.00 3.33
30 31 5.349543 GCATATACATCATCATCGCTGTTGA 59.650 40.000 2.76 2.76 35.97 3.18
31 32 6.036844 GCATATACATCATCATCGCTGTTGAT 59.963 38.462 6.93 6.93 40.73 2.57
32 33 7.619328 CATATACATCATCATCGCTGTTGATC 58.381 38.462 9.31 0.00 38.96 2.92
33 34 3.800531 ACATCATCATCGCTGTTGATCA 58.199 40.909 9.31 0.00 38.96 2.92
34 35 4.386711 ACATCATCATCGCTGTTGATCAT 58.613 39.130 9.31 0.44 38.96 2.45
35 36 4.451435 ACATCATCATCGCTGTTGATCATC 59.549 41.667 9.31 0.00 38.96 2.92
36 37 4.332428 TCATCATCGCTGTTGATCATCT 57.668 40.909 0.00 0.00 31.50 2.90
37 38 4.056050 TCATCATCGCTGTTGATCATCTG 58.944 43.478 0.00 0.91 31.50 2.90
38 39 3.806625 TCATCGCTGTTGATCATCTGA 57.193 42.857 13.19 5.86 0.00 3.27
39 40 4.127566 TCATCGCTGTTGATCATCTGAA 57.872 40.909 13.19 2.88 0.00 3.02
40 41 3.867493 TCATCGCTGTTGATCATCTGAAC 59.133 43.478 13.19 1.68 0.00 3.18
41 42 3.317603 TCGCTGTTGATCATCTGAACA 57.682 42.857 13.19 6.02 0.00 3.18
42 43 3.663025 TCGCTGTTGATCATCTGAACAA 58.337 40.909 13.19 0.00 35.01 2.83
43 44 4.256110 TCGCTGTTGATCATCTGAACAAT 58.744 39.130 13.19 0.00 38.70 2.71
44 45 4.093850 TCGCTGTTGATCATCTGAACAATG 59.906 41.667 13.19 4.69 38.70 2.82
45 46 4.142752 CGCTGTTGATCATCTGAACAATGT 60.143 41.667 13.19 0.00 38.70 2.71
46 47 5.330295 GCTGTTGATCATCTGAACAATGTC 58.670 41.667 13.19 0.00 38.70 3.06
47 48 5.106436 GCTGTTGATCATCTGAACAATGTCA 60.106 40.000 13.19 0.71 38.70 3.58
48 49 6.490566 TGTTGATCATCTGAACAATGTCAG 57.509 37.500 0.00 6.53 45.44 3.51
49 50 5.106436 TGTTGATCATCTGAACAATGTCAGC 60.106 40.000 0.00 0.00 44.01 4.26
50 51 3.943381 TGATCATCTGAACAATGTCAGCC 59.057 43.478 0.00 0.00 44.01 4.85
51 52 3.708403 TCATCTGAACAATGTCAGCCT 57.292 42.857 7.60 0.00 44.01 4.58
52 53 4.025040 TCATCTGAACAATGTCAGCCTT 57.975 40.909 7.60 0.00 44.01 4.35
53 54 5.164620 TCATCTGAACAATGTCAGCCTTA 57.835 39.130 7.60 0.00 44.01 2.69
54 55 5.181009 TCATCTGAACAATGTCAGCCTTAG 58.819 41.667 7.60 0.00 44.01 2.18
55 56 4.623932 TCTGAACAATGTCAGCCTTAGT 57.376 40.909 7.60 0.00 44.01 2.24
56 57 4.973168 TCTGAACAATGTCAGCCTTAGTT 58.027 39.130 7.60 0.00 44.01 2.24
57 58 5.376625 TCTGAACAATGTCAGCCTTAGTTT 58.623 37.500 7.60 0.00 44.01 2.66
58 59 5.239306 TCTGAACAATGTCAGCCTTAGTTTG 59.761 40.000 7.60 0.00 44.01 2.93
59 60 4.887071 TGAACAATGTCAGCCTTAGTTTGT 59.113 37.500 0.00 0.00 0.00 2.83
60 61 5.359576 TGAACAATGTCAGCCTTAGTTTGTT 59.640 36.000 0.00 0.00 38.21 2.83
61 62 6.544197 TGAACAATGTCAGCCTTAGTTTGTTA 59.456 34.615 0.00 0.00 36.33 2.41
62 63 6.560253 ACAATGTCAGCCTTAGTTTGTTAG 57.440 37.500 0.00 0.00 0.00 2.34
63 64 5.048713 ACAATGTCAGCCTTAGTTTGTTAGC 60.049 40.000 0.00 0.00 0.00 3.09
64 65 4.079980 TGTCAGCCTTAGTTTGTTAGCA 57.920 40.909 0.00 0.00 0.00 3.49
65 66 3.813166 TGTCAGCCTTAGTTTGTTAGCAC 59.187 43.478 0.00 0.00 0.00 4.40
66 67 3.813166 GTCAGCCTTAGTTTGTTAGCACA 59.187 43.478 0.00 0.00 0.00 4.57
67 68 4.455877 GTCAGCCTTAGTTTGTTAGCACAT 59.544 41.667 0.00 0.00 31.06 3.21
68 69 5.642063 GTCAGCCTTAGTTTGTTAGCACATA 59.358 40.000 0.00 0.00 31.06 2.29
69 70 6.316390 GTCAGCCTTAGTTTGTTAGCACATAT 59.684 38.462 0.00 0.00 31.06 1.78
70 71 6.538742 TCAGCCTTAGTTTGTTAGCACATATC 59.461 38.462 0.00 0.00 31.06 1.63
71 72 6.316140 CAGCCTTAGTTTGTTAGCACATATCA 59.684 38.462 0.00 0.00 31.06 2.15
72 73 7.012704 CAGCCTTAGTTTGTTAGCACATATCAT 59.987 37.037 0.00 0.00 31.06 2.45
73 74 7.227512 AGCCTTAGTTTGTTAGCACATATCATC 59.772 37.037 0.00 0.00 31.06 2.92
74 75 7.012327 GCCTTAGTTTGTTAGCACATATCATCA 59.988 37.037 0.00 0.00 31.06 3.07
75 76 9.060347 CCTTAGTTTGTTAGCACATATCATCAT 57.940 33.333 0.00 0.00 31.06 2.45
78 79 8.743085 AGTTTGTTAGCACATATCATCATTCT 57.257 30.769 0.00 0.00 31.06 2.40
79 80 8.618677 AGTTTGTTAGCACATATCATCATTCTG 58.381 33.333 0.00 0.00 31.06 3.02
80 81 8.615211 GTTTGTTAGCACATATCATCATTCTGA 58.385 33.333 0.00 0.00 31.06 3.27
81 82 8.735692 TTGTTAGCACATATCATCATTCTGAA 57.264 30.769 0.00 0.00 31.06 3.02
82 83 8.735692 TGTTAGCACATATCATCATTCTGAAA 57.264 30.769 0.00 0.00 0.00 2.69
83 84 8.615211 TGTTAGCACATATCATCATTCTGAAAC 58.385 33.333 0.00 0.00 0.00 2.78
84 85 8.834465 GTTAGCACATATCATCATTCTGAAACT 58.166 33.333 0.00 0.00 0.00 2.66
85 86 7.493743 AGCACATATCATCATTCTGAAACTC 57.506 36.000 0.00 0.00 0.00 3.01
86 87 7.281098 AGCACATATCATCATTCTGAAACTCT 58.719 34.615 0.00 0.00 0.00 3.24
87 88 7.226918 AGCACATATCATCATTCTGAAACTCTG 59.773 37.037 0.00 0.00 0.00 3.35
88 89 7.012138 GCACATATCATCATTCTGAAACTCTGT 59.988 37.037 0.00 0.00 0.00 3.41
89 90 8.336080 CACATATCATCATTCTGAAACTCTGTG 58.664 37.037 0.00 0.00 0.00 3.66
90 91 8.045507 ACATATCATCATTCTGAAACTCTGTGT 58.954 33.333 0.00 0.00 0.00 3.72
91 92 6.738832 ATCATCATTCTGAAACTCTGTGTG 57.261 37.500 0.00 0.00 0.00 3.82
92 93 4.453478 TCATCATTCTGAAACTCTGTGTGC 59.547 41.667 0.00 0.00 0.00 4.57
93 94 3.807553 TCATTCTGAAACTCTGTGTGCA 58.192 40.909 0.00 0.00 0.00 4.57
94 95 3.811497 TCATTCTGAAACTCTGTGTGCAG 59.189 43.478 0.00 6.64 43.87 4.41
95 96 2.988010 TCTGAAACTCTGTGTGCAGT 57.012 45.000 0.00 0.00 43.05 4.40
96 97 3.266510 TCTGAAACTCTGTGTGCAGTT 57.733 42.857 0.00 0.00 43.05 3.16
97 98 3.609853 TCTGAAACTCTGTGTGCAGTTT 58.390 40.909 0.00 0.00 43.94 2.66
98 99 4.765273 TCTGAAACTCTGTGTGCAGTTTA 58.235 39.130 0.06 0.00 41.83 2.01
99 100 4.570772 TCTGAAACTCTGTGTGCAGTTTAC 59.429 41.667 0.06 0.00 41.83 2.01
100 101 3.625764 TGAAACTCTGTGTGCAGTTTACC 59.374 43.478 0.06 0.00 41.83 2.85
101 102 2.256117 ACTCTGTGTGCAGTTTACCC 57.744 50.000 0.00 0.00 43.05 3.69
102 103 1.488812 ACTCTGTGTGCAGTTTACCCA 59.511 47.619 0.00 0.00 43.05 4.51
103 104 2.092646 ACTCTGTGTGCAGTTTACCCAA 60.093 45.455 0.00 0.00 43.05 4.12
104 105 2.290641 CTCTGTGTGCAGTTTACCCAAC 59.709 50.000 0.00 0.00 43.05 3.77
105 106 2.020720 CTGTGTGCAGTTTACCCAACA 58.979 47.619 0.00 0.00 37.93 3.33
106 107 2.622942 CTGTGTGCAGTTTACCCAACAT 59.377 45.455 0.00 0.00 37.93 2.71
107 108 3.027412 TGTGTGCAGTTTACCCAACATT 58.973 40.909 0.00 0.00 37.93 2.71
108 109 3.449018 TGTGTGCAGTTTACCCAACATTT 59.551 39.130 0.00 0.00 37.93 2.32
109 110 4.645136 TGTGTGCAGTTTACCCAACATTTA 59.355 37.500 0.00 0.00 37.93 1.40
110 111 4.979815 GTGTGCAGTTTACCCAACATTTAC 59.020 41.667 0.00 0.00 37.93 2.01
111 112 4.223659 GTGCAGTTTACCCAACATTTACG 58.776 43.478 0.00 0.00 37.93 3.18
112 113 3.253677 TGCAGTTTACCCAACATTTACGG 59.746 43.478 0.00 0.00 37.93 4.02
113 114 3.366577 GCAGTTTACCCAACATTTACGGG 60.367 47.826 0.00 0.00 46.22 5.28
114 115 3.191791 CAGTTTACCCAACATTTACGGGG 59.808 47.826 0.00 0.00 44.96 5.73
115 116 3.074242 AGTTTACCCAACATTTACGGGGA 59.926 43.478 1.96 0.00 44.96 4.81
116 117 3.353370 TTACCCAACATTTACGGGGAG 57.647 47.619 1.96 0.00 44.96 4.30
117 118 0.323087 ACCCAACATTTACGGGGAGC 60.323 55.000 1.96 0.00 44.96 4.70
118 119 0.322997 CCCAACATTTACGGGGAGCA 60.323 55.000 0.00 0.00 43.57 4.26
119 120 1.094785 CCAACATTTACGGGGAGCAG 58.905 55.000 0.00 0.00 0.00 4.24
120 121 1.339631 CCAACATTTACGGGGAGCAGA 60.340 52.381 0.00 0.00 0.00 4.26
121 122 1.737793 CAACATTTACGGGGAGCAGAC 59.262 52.381 0.00 0.00 0.00 3.51
122 123 0.108329 ACATTTACGGGGAGCAGACG 60.108 55.000 0.00 0.00 0.00 4.18
123 124 0.108329 CATTTACGGGGAGCAGACGT 60.108 55.000 0.00 0.00 43.88 4.34
124 125 1.135527 CATTTACGGGGAGCAGACGTA 59.864 52.381 0.00 0.00 41.53 3.57
125 126 1.477553 TTTACGGGGAGCAGACGTAT 58.522 50.000 0.00 0.00 41.90 3.06
126 127 0.742505 TTACGGGGAGCAGACGTATG 59.257 55.000 5.65 5.65 41.90 2.39
127 128 1.105167 TACGGGGAGCAGACGTATGG 61.105 60.000 12.80 0.00 41.53 2.74
128 129 2.109181 GGGGAGCAGACGTATGGC 59.891 66.667 12.80 4.85 0.00 4.40
129 130 2.435693 GGGGAGCAGACGTATGGCT 61.436 63.158 12.80 10.04 41.35 4.75
130 131 1.113517 GGGGAGCAGACGTATGGCTA 61.114 60.000 12.80 0.00 38.15 3.93
131 132 0.032267 GGGAGCAGACGTATGGCTAC 59.968 60.000 12.80 10.55 38.15 3.58
132 133 0.744874 GGAGCAGACGTATGGCTACA 59.255 55.000 12.80 0.00 38.40 2.74
133 134 1.136305 GGAGCAGACGTATGGCTACAA 59.864 52.381 12.80 0.00 38.40 2.41
134 135 2.194271 GAGCAGACGTATGGCTACAAC 58.806 52.381 12.80 0.00 38.15 3.32
135 136 1.548719 AGCAGACGTATGGCTACAACA 59.451 47.619 12.80 0.00 35.82 3.33
136 137 1.659098 GCAGACGTATGGCTACAACAC 59.341 52.381 12.80 0.00 0.00 3.32
137 138 1.917955 CAGACGTATGGCTACAACACG 59.082 52.381 1.22 0.00 38.52 4.49
139 140 1.986698 ACGTATGGCTACAACACGTC 58.013 50.000 0.00 0.00 41.62 4.34
140 141 1.542915 ACGTATGGCTACAACACGTCT 59.457 47.619 0.00 0.00 41.62 4.18
141 142 2.749076 ACGTATGGCTACAACACGTCTA 59.251 45.455 0.00 0.00 41.62 2.59
142 143 3.191162 ACGTATGGCTACAACACGTCTAA 59.809 43.478 0.00 0.00 41.62 2.10
143 144 3.789756 CGTATGGCTACAACACGTCTAAG 59.210 47.826 0.00 0.00 0.00 2.18
144 145 4.437794 CGTATGGCTACAACACGTCTAAGA 60.438 45.833 0.00 0.00 0.00 2.10
145 146 4.737855 ATGGCTACAACACGTCTAAGAT 57.262 40.909 0.00 0.00 0.00 2.40
146 147 4.106029 TGGCTACAACACGTCTAAGATC 57.894 45.455 0.00 0.00 0.00 2.75
147 148 3.119245 TGGCTACAACACGTCTAAGATCC 60.119 47.826 0.00 0.00 0.00 3.36
148 149 3.106672 GCTACAACACGTCTAAGATCCG 58.893 50.000 0.00 0.00 0.00 4.18
149 150 2.649331 ACAACACGTCTAAGATCCGG 57.351 50.000 0.00 0.00 0.00 5.14
150 151 2.165167 ACAACACGTCTAAGATCCGGA 58.835 47.619 6.61 6.61 0.00 5.14
151 152 2.559668 ACAACACGTCTAAGATCCGGAA 59.440 45.455 9.01 0.00 0.00 4.30
152 153 3.179830 CAACACGTCTAAGATCCGGAAG 58.820 50.000 9.01 0.06 0.00 3.46
153 154 1.134560 ACACGTCTAAGATCCGGAAGC 59.865 52.381 9.01 3.41 0.00 3.86
154 155 1.405821 CACGTCTAAGATCCGGAAGCT 59.594 52.381 9.01 6.26 0.00 3.74
155 156 1.405821 ACGTCTAAGATCCGGAAGCTG 59.594 52.381 9.01 0.00 0.00 4.24
156 157 1.269309 CGTCTAAGATCCGGAAGCTGG 60.269 57.143 9.01 6.43 0.00 4.85
157 158 1.069358 GTCTAAGATCCGGAAGCTGGG 59.931 57.143 9.01 6.08 0.00 4.45
158 159 0.394565 CTAAGATCCGGAAGCTGGGG 59.605 60.000 9.01 0.00 0.00 4.96
159 160 1.696097 TAAGATCCGGAAGCTGGGGC 61.696 60.000 9.01 0.00 39.06 5.80
169 170 2.125350 GCTGGGGCTCGAGTTCAG 60.125 66.667 15.13 18.16 35.22 3.02
170 171 2.650116 GCTGGGGCTCGAGTTCAGA 61.650 63.158 24.97 5.05 35.22 3.27
171 172 1.515020 CTGGGGCTCGAGTTCAGAG 59.485 63.158 15.13 0.46 38.68 3.35
172 173 1.954362 CTGGGGCTCGAGTTCAGAGG 61.954 65.000 15.13 0.00 36.31 3.69
175 176 2.569134 GCTCGAGTTCAGAGGCGT 59.431 61.111 15.13 0.00 36.31 5.68
176 177 1.803519 GCTCGAGTTCAGAGGCGTG 60.804 63.158 15.13 0.00 36.31 5.34
177 178 1.153939 CTCGAGTTCAGAGGCGTGG 60.154 63.158 3.62 0.00 32.38 4.94
178 179 1.587043 CTCGAGTTCAGAGGCGTGGA 61.587 60.000 3.62 0.00 32.38 4.02
179 180 1.153939 CGAGTTCAGAGGCGTGGAG 60.154 63.158 0.00 0.00 0.00 3.86
180 181 1.216710 GAGTTCAGAGGCGTGGAGG 59.783 63.158 0.00 0.00 0.00 4.30
181 182 1.228894 AGTTCAGAGGCGTGGAGGA 60.229 57.895 0.00 0.00 0.00 3.71
182 183 1.216710 GTTCAGAGGCGTGGAGGAG 59.783 63.158 0.00 0.00 0.00 3.69
183 184 1.076727 TTCAGAGGCGTGGAGGAGA 59.923 57.895 0.00 0.00 0.00 3.71
184 185 0.324738 TTCAGAGGCGTGGAGGAGAT 60.325 55.000 0.00 0.00 0.00 2.75
185 186 1.039785 TCAGAGGCGTGGAGGAGATG 61.040 60.000 0.00 0.00 0.00 2.90
186 187 1.000993 AGAGGCGTGGAGGAGATGT 59.999 57.895 0.00 0.00 0.00 3.06
187 188 0.616111 AGAGGCGTGGAGGAGATGTT 60.616 55.000 0.00 0.00 0.00 2.71
188 189 0.179097 GAGGCGTGGAGGAGATGTTC 60.179 60.000 0.00 0.00 0.00 3.18
189 190 1.519455 GGCGTGGAGGAGATGTTCG 60.519 63.158 0.00 0.00 0.00 3.95
190 191 1.511305 GCGTGGAGGAGATGTTCGA 59.489 57.895 0.00 0.00 0.00 3.71
191 192 0.802607 GCGTGGAGGAGATGTTCGAC 60.803 60.000 0.00 0.00 0.00 4.20
192 193 0.523546 CGTGGAGGAGATGTTCGACG 60.524 60.000 0.00 0.00 38.72 5.12
193 194 0.809385 GTGGAGGAGATGTTCGACGA 59.191 55.000 0.00 0.00 0.00 4.20
194 195 0.809385 TGGAGGAGATGTTCGACGAC 59.191 55.000 0.00 0.00 0.00 4.34
195 196 1.096416 GGAGGAGATGTTCGACGACT 58.904 55.000 0.00 0.00 0.00 4.18
196 197 1.064357 GGAGGAGATGTTCGACGACTC 59.936 57.143 0.00 0.37 0.00 3.36
197 198 0.727970 AGGAGATGTTCGACGACTCG 59.272 55.000 0.00 0.00 41.65 4.18
198 199 0.248134 GGAGATGTTCGACGACTCGG 60.248 60.000 0.00 0.00 40.58 4.63
199 200 0.447011 GAGATGTTCGACGACTCGGT 59.553 55.000 0.00 0.00 40.58 4.69
200 201 0.168348 AGATGTTCGACGACTCGGTG 59.832 55.000 0.00 0.00 40.58 4.94
201 202 0.797249 GATGTTCGACGACTCGGTGG 60.797 60.000 0.00 0.00 40.58 4.61
202 203 1.239296 ATGTTCGACGACTCGGTGGA 61.239 55.000 0.00 0.00 40.58 4.02
203 204 1.154263 GTTCGACGACTCGGTGGAG 60.154 63.158 0.00 0.00 46.13 3.86
211 212 2.962569 CTCGGTGGAGTCGCTCAA 59.037 61.111 8.71 0.00 35.48 3.02
212 213 1.289066 CTCGGTGGAGTCGCTCAAA 59.711 57.895 8.71 0.00 35.48 2.69
213 214 0.734253 CTCGGTGGAGTCGCTCAAAG 60.734 60.000 8.71 0.00 35.48 2.77
214 215 2.383527 CGGTGGAGTCGCTCAAAGC 61.384 63.158 8.71 5.48 38.02 3.51
233 234 3.026879 CACGGCTATCTGCGCGAG 61.027 66.667 12.10 4.52 44.05 5.03
234 235 4.271816 ACGGCTATCTGCGCGAGG 62.272 66.667 12.10 0.20 44.05 4.63
257 258 3.993234 GCGTGATGCGGATGAGCG 61.993 66.667 0.00 0.00 41.69 5.03
258 259 3.333189 CGTGATGCGGATGAGCGG 61.333 66.667 0.00 0.00 40.67 5.52
259 260 2.106938 GTGATGCGGATGAGCGGA 59.893 61.111 0.00 0.00 40.67 5.54
260 261 2.106938 TGATGCGGATGAGCGGAC 59.893 61.111 0.00 0.00 40.67 4.79
261 262 2.106938 GATGCGGATGAGCGGACA 59.893 61.111 0.00 0.00 40.67 4.02
262 263 1.953138 GATGCGGATGAGCGGACAG 60.953 63.158 0.00 0.00 40.67 3.51
263 264 3.451556 ATGCGGATGAGCGGACAGG 62.452 63.158 0.00 0.00 40.67 4.00
264 265 3.838271 GCGGATGAGCGGACAGGA 61.838 66.667 0.00 0.00 0.00 3.86
265 266 3.133014 CGGATGAGCGGACAGGAT 58.867 61.111 0.00 0.00 0.00 3.24
266 267 1.006805 CGGATGAGCGGACAGGATC 60.007 63.158 0.00 0.00 0.00 3.36
267 268 1.006805 GGATGAGCGGACAGGATCG 60.007 63.158 0.00 0.00 0.00 3.69
268 269 1.456196 GGATGAGCGGACAGGATCGA 61.456 60.000 0.00 0.00 0.00 3.59
269 270 0.600557 GATGAGCGGACAGGATCGAT 59.399 55.000 0.00 0.00 0.00 3.59
270 271 0.600557 ATGAGCGGACAGGATCGATC 59.399 55.000 17.36 17.36 41.43 3.69
279 280 2.338984 GGATCGATCCCGTTCCCG 59.661 66.667 30.80 0.00 44.70 5.14
297 298 0.105778 CGGAGGGAAGAAGATGAGGC 59.894 60.000 0.00 0.00 0.00 4.70
298 299 0.472044 GGAGGGAAGAAGATGAGGCC 59.528 60.000 0.00 0.00 0.00 5.19
299 300 0.105778 GAGGGAAGAAGATGAGGCCG 59.894 60.000 0.00 0.00 0.00 6.13
300 301 0.618968 AGGGAAGAAGATGAGGCCGT 60.619 55.000 0.00 0.00 0.00 5.68
301 302 0.462759 GGGAAGAAGATGAGGCCGTG 60.463 60.000 0.00 0.00 0.00 4.94
302 303 0.462759 GGAAGAAGATGAGGCCGTGG 60.463 60.000 0.00 0.00 0.00 4.94
303 304 0.250513 GAAGAAGATGAGGCCGTGGT 59.749 55.000 0.00 0.00 0.00 4.16
304 305 0.036010 AAGAAGATGAGGCCGTGGTG 60.036 55.000 0.00 0.00 0.00 4.17
305 306 1.450312 GAAGATGAGGCCGTGGTGG 60.450 63.158 0.00 0.00 42.50 4.61
306 307 2.185310 GAAGATGAGGCCGTGGTGGT 62.185 60.000 0.00 0.00 41.21 4.16
307 308 2.436646 GATGAGGCCGTGGTGGTG 60.437 66.667 0.00 0.00 41.21 4.17
308 309 4.722700 ATGAGGCCGTGGTGGTGC 62.723 66.667 0.00 0.00 41.21 5.01
315 316 4.320456 CGTGGTGGTGCCTGCTCT 62.320 66.667 0.00 0.00 38.35 4.09
316 317 2.942796 CGTGGTGGTGCCTGCTCTA 61.943 63.158 0.00 0.00 38.35 2.43
317 318 1.078848 GTGGTGGTGCCTGCTCTAG 60.079 63.158 0.00 0.00 38.35 2.43
318 319 1.229177 TGGTGGTGCCTGCTCTAGA 60.229 57.895 0.00 0.00 38.35 2.43
319 320 0.835971 TGGTGGTGCCTGCTCTAGAA 60.836 55.000 0.00 0.00 38.35 2.10
320 321 0.107945 GGTGGTGCCTGCTCTAGAAG 60.108 60.000 0.00 0.00 0.00 2.85
338 339 9.624697 CTCTAGAAGCATTTCAGCTATTACTAG 57.375 37.037 0.00 0.00 45.89 2.57
339 340 9.137459 TCTAGAAGCATTTCAGCTATTACTAGT 57.863 33.333 0.00 0.00 45.89 2.57
342 343 8.919145 AGAAGCATTTCAGCTATTACTAGTACT 58.081 33.333 0.91 0.00 45.89 2.73
345 346 9.357161 AGCATTTCAGCTATTACTAGTACTAGT 57.643 33.333 32.39 32.39 44.50 2.57
360 361 8.842280 ACTAGTACTAGTACATGAGAAGAATGC 58.158 37.037 29.96 2.99 43.98 3.56
361 362 6.730175 AGTACTAGTACATGAGAAGAATGCG 58.270 40.000 29.87 0.00 38.48 4.73
362 363 5.584253 ACTAGTACATGAGAAGAATGCGT 57.416 39.130 0.00 0.00 0.00 5.24
363 364 5.967088 ACTAGTACATGAGAAGAATGCGTT 58.033 37.500 0.00 0.00 0.00 4.84
364 365 6.037098 ACTAGTACATGAGAAGAATGCGTTC 58.963 40.000 10.85 10.85 34.46 3.95
365 366 4.184629 AGTACATGAGAAGAATGCGTTCC 58.815 43.478 15.10 0.95 34.81 3.62
366 367 2.359900 ACATGAGAAGAATGCGTTCCC 58.640 47.619 15.10 7.69 34.81 3.97
367 368 2.026822 ACATGAGAAGAATGCGTTCCCT 60.027 45.455 15.10 12.26 34.81 4.20
368 369 2.859165 TGAGAAGAATGCGTTCCCTT 57.141 45.000 15.10 3.97 34.81 3.95
369 370 3.140325 TGAGAAGAATGCGTTCCCTTT 57.860 42.857 15.10 3.23 34.81 3.11
370 371 2.813754 TGAGAAGAATGCGTTCCCTTTG 59.186 45.455 15.10 0.00 34.81 2.77
371 372 2.814336 GAGAAGAATGCGTTCCCTTTGT 59.186 45.455 15.10 1.94 34.81 2.83
372 373 3.222603 AGAAGAATGCGTTCCCTTTGTT 58.777 40.909 15.10 1.74 34.81 2.83
373 374 3.004734 AGAAGAATGCGTTCCCTTTGTTG 59.995 43.478 15.10 0.00 34.81 3.33
374 375 2.306847 AGAATGCGTTCCCTTTGTTGT 58.693 42.857 15.10 0.00 34.81 3.32
375 376 2.293399 AGAATGCGTTCCCTTTGTTGTC 59.707 45.455 15.10 0.00 34.81 3.18
376 377 1.981256 ATGCGTTCCCTTTGTTGTCT 58.019 45.000 0.00 0.00 0.00 3.41
377 378 1.757682 TGCGTTCCCTTTGTTGTCTT 58.242 45.000 0.00 0.00 0.00 3.01
378 379 2.920524 TGCGTTCCCTTTGTTGTCTTA 58.079 42.857 0.00 0.00 0.00 2.10
379 380 3.280295 TGCGTTCCCTTTGTTGTCTTAA 58.720 40.909 0.00 0.00 0.00 1.85
380 381 3.314080 TGCGTTCCCTTTGTTGTCTTAAG 59.686 43.478 0.00 0.00 0.00 1.85
381 382 3.314357 GCGTTCCCTTTGTTGTCTTAAGT 59.686 43.478 1.63 0.00 0.00 2.24
382 383 4.201980 GCGTTCCCTTTGTTGTCTTAAGTT 60.202 41.667 1.63 0.00 0.00 2.66
383 384 5.507974 CGTTCCCTTTGTTGTCTTAAGTTC 58.492 41.667 1.63 0.00 0.00 3.01
384 385 5.296035 CGTTCCCTTTGTTGTCTTAAGTTCT 59.704 40.000 1.63 0.00 0.00 3.01
385 386 6.495706 GTTCCCTTTGTTGTCTTAAGTTCTG 58.504 40.000 1.63 0.00 0.00 3.02
386 387 4.578928 TCCCTTTGTTGTCTTAAGTTCTGC 59.421 41.667 1.63 0.00 0.00 4.26
387 388 4.580580 CCCTTTGTTGTCTTAAGTTCTGCT 59.419 41.667 1.63 0.00 0.00 4.24
388 389 5.067805 CCCTTTGTTGTCTTAAGTTCTGCTT 59.932 40.000 1.63 0.00 41.05 3.91
389 390 6.405842 CCCTTTGTTGTCTTAAGTTCTGCTTT 60.406 38.462 1.63 0.00 38.57 3.51
390 391 6.473455 CCTTTGTTGTCTTAAGTTCTGCTTTG 59.527 38.462 1.63 0.00 38.57 2.77
391 392 5.499139 TGTTGTCTTAAGTTCTGCTTTGG 57.501 39.130 1.63 0.00 38.57 3.28
392 393 4.338118 TGTTGTCTTAAGTTCTGCTTTGGG 59.662 41.667 1.63 0.00 38.57 4.12
393 394 2.884639 TGTCTTAAGTTCTGCTTTGGGC 59.115 45.455 1.63 0.00 38.57 5.36
528 545 3.886123 ACACTAGTTGCTTGTTTGGACT 58.114 40.909 0.00 0.00 0.00 3.85
550 569 6.787225 ACTGTTTTAAGTGCGTTTATGACAA 58.213 32.000 0.00 0.00 0.00 3.18
553 572 5.365403 TTTAAGTGCGTTTATGACAAGGG 57.635 39.130 0.00 0.00 0.00 3.95
554 573 1.821216 AGTGCGTTTATGACAAGGGG 58.179 50.000 0.00 0.00 0.00 4.79
555 574 0.808755 GTGCGTTTATGACAAGGGGG 59.191 55.000 0.00 0.00 0.00 5.40
569 588 2.678470 GGGGGCCCGTTTATGACA 59.322 61.111 17.79 0.00 0.00 3.58
570 589 1.000646 GGGGGCCCGTTTATGACAA 60.001 57.895 17.79 0.00 0.00 3.18
571 590 1.035385 GGGGGCCCGTTTATGACAAG 61.035 60.000 17.79 0.00 0.00 3.16
572 591 1.035385 GGGGCCCGTTTATGACAAGG 61.035 60.000 17.79 0.00 0.00 3.61
573 592 1.035385 GGGCCCGTTTATGACAAGGG 61.035 60.000 5.69 0.00 44.72 3.95
595 614 4.771356 CCGCATCCGTCGACGTGT 62.771 66.667 33.49 20.16 37.74 4.49
1201 1237 0.105039 GACTCCGATTTCGAGGGCAT 59.895 55.000 0.67 0.00 43.02 4.40
1497 1537 4.015918 TGATAGTAGTGGGTTAGGGAGGTT 60.016 45.833 0.00 0.00 0.00 3.50
1529 1569 2.222027 GCCAGTATGTGCATAGGGTTC 58.778 52.381 0.00 0.00 33.37 3.62
1757 1835 2.039879 GAGGGAAGAAACTGTGGGCTAA 59.960 50.000 0.00 0.00 0.00 3.09
2122 2200 5.764686 TGCTGAAGAGAAGATTAAGTTGCAA 59.235 36.000 0.00 0.00 0.00 4.08
2506 6584 5.475220 GCCCTTTTCTAGCTTTCTTCTTCTT 59.525 40.000 0.00 0.00 0.00 2.52
2507 6585 6.348950 GCCCTTTTCTAGCTTTCTTCTTCTTC 60.349 42.308 0.00 0.00 0.00 2.87
2508 6586 6.939730 CCCTTTTCTAGCTTTCTTCTTCTTCT 59.060 38.462 0.00 0.00 0.00 2.85
3184 7300 7.118060 TCATCCACCTTATCATCATCACAAAA 58.882 34.615 0.00 0.00 0.00 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.006455 CAGCGATGATGATGTATATGCTTCC 59.994 44.000 0.00 0.00 0.00 3.46
3 4 5.579904 ACAGCGATGATGATGTATATGCTTC 59.420 40.000 8.12 0.46 36.58 3.86
5 6 5.082251 ACAGCGATGATGATGTATATGCT 57.918 39.130 8.12 0.00 36.58 3.79
6 7 5.349543 TCAACAGCGATGATGATGTATATGC 59.650 40.000 9.73 0.00 37.53 3.14
7 8 6.956299 TCAACAGCGATGATGATGTATATG 57.044 37.500 9.73 0.00 37.53 1.78
8 9 7.325694 TGATCAACAGCGATGATGATGTATAT 58.674 34.615 27.82 6.66 37.53 0.86
9 10 6.690530 TGATCAACAGCGATGATGATGTATA 58.309 36.000 27.82 10.81 37.53 1.47
10 11 5.544650 TGATCAACAGCGATGATGATGTAT 58.455 37.500 27.82 7.77 37.53 2.29
11 12 4.947645 TGATCAACAGCGATGATGATGTA 58.052 39.130 27.82 15.19 37.53 2.29
12 13 3.800531 TGATCAACAGCGATGATGATGT 58.199 40.909 27.82 8.87 40.85 3.06
13 14 4.691216 AGATGATCAACAGCGATGATGATG 59.309 41.667 27.82 11.72 40.13 3.07
14 15 4.691216 CAGATGATCAACAGCGATGATGAT 59.309 41.667 23.94 23.94 40.13 2.45
15 16 4.056050 CAGATGATCAACAGCGATGATGA 58.944 43.478 16.10 16.10 40.13 2.92
16 17 4.056050 TCAGATGATCAACAGCGATGATG 58.944 43.478 8.12 6.01 40.13 3.07
17 18 4.332428 TCAGATGATCAACAGCGATGAT 57.668 40.909 8.12 0.00 40.13 2.45
18 19 3.806625 TCAGATGATCAACAGCGATGA 57.193 42.857 8.12 0.00 40.13 2.92
19 20 3.619929 TGTTCAGATGATCAACAGCGATG 59.380 43.478 0.00 0.00 40.13 3.84
20 21 3.865446 TGTTCAGATGATCAACAGCGAT 58.135 40.909 0.00 0.00 40.13 4.58
21 22 3.317603 TGTTCAGATGATCAACAGCGA 57.682 42.857 0.00 0.00 40.13 4.93
22 23 4.142752 ACATTGTTCAGATGATCAACAGCG 60.143 41.667 0.00 0.00 40.13 5.18
23 24 5.106436 TGACATTGTTCAGATGATCAACAGC 60.106 40.000 0.00 2.96 36.80 4.40
24 25 6.490566 TGACATTGTTCAGATGATCAACAG 57.509 37.500 0.00 0.00 36.80 3.16
25 26 5.106436 GCTGACATTGTTCAGATGATCAACA 60.106 40.000 15.82 0.00 45.19 3.33
26 27 5.330295 GCTGACATTGTTCAGATGATCAAC 58.670 41.667 15.82 0.00 45.19 3.18
27 28 4.397103 GGCTGACATTGTTCAGATGATCAA 59.603 41.667 15.82 8.37 45.19 2.57
28 29 3.943381 GGCTGACATTGTTCAGATGATCA 59.057 43.478 15.82 0.00 45.19 2.92
29 30 4.197750 AGGCTGACATTGTTCAGATGATC 58.802 43.478 15.82 0.00 45.19 2.92
30 31 4.232188 AGGCTGACATTGTTCAGATGAT 57.768 40.909 15.82 1.52 45.19 2.45
31 32 3.708403 AGGCTGACATTGTTCAGATGA 57.292 42.857 15.82 0.00 45.19 2.92
32 33 4.940046 ACTAAGGCTGACATTGTTCAGATG 59.060 41.667 15.82 0.00 45.19 2.90
33 34 5.171339 ACTAAGGCTGACATTGTTCAGAT 57.829 39.130 15.82 7.25 45.19 2.90
34 35 4.623932 ACTAAGGCTGACATTGTTCAGA 57.376 40.909 15.82 0.62 45.19 3.27
35 36 5.009010 ACAAACTAAGGCTGACATTGTTCAG 59.991 40.000 10.20 10.20 45.15 3.02
36 37 4.887071 ACAAACTAAGGCTGACATTGTTCA 59.113 37.500 0.00 0.00 0.00 3.18
37 38 5.438761 ACAAACTAAGGCTGACATTGTTC 57.561 39.130 0.00 0.00 0.00 3.18
38 39 5.852282 AACAAACTAAGGCTGACATTGTT 57.148 34.783 12.93 12.93 35.40 2.83
39 40 5.048713 GCTAACAAACTAAGGCTGACATTGT 60.049 40.000 0.00 0.00 0.00 2.71
40 41 5.048782 TGCTAACAAACTAAGGCTGACATTG 60.049 40.000 0.00 0.00 0.00 2.82
41 42 5.048713 GTGCTAACAAACTAAGGCTGACATT 60.049 40.000 0.00 0.00 0.00 2.71
42 43 4.455877 GTGCTAACAAACTAAGGCTGACAT 59.544 41.667 0.00 0.00 0.00 3.06
43 44 3.813166 GTGCTAACAAACTAAGGCTGACA 59.187 43.478 0.00 0.00 0.00 3.58
44 45 3.813166 TGTGCTAACAAACTAAGGCTGAC 59.187 43.478 0.00 0.00 31.82 3.51
45 46 4.079980 TGTGCTAACAAACTAAGGCTGA 57.920 40.909 0.00 0.00 31.82 4.26
46 47 6.316140 TGATATGTGCTAACAAACTAAGGCTG 59.684 38.462 0.00 0.00 40.46 4.85
47 48 6.414732 TGATATGTGCTAACAAACTAAGGCT 58.585 36.000 0.00 0.00 40.46 4.58
48 49 6.677781 TGATATGTGCTAACAAACTAAGGC 57.322 37.500 0.00 0.00 40.46 4.35
49 50 8.437360 TGATGATATGTGCTAACAAACTAAGG 57.563 34.615 0.00 0.00 40.46 2.69
52 53 9.836864 AGAATGATGATATGTGCTAACAAACTA 57.163 29.630 0.00 0.00 40.46 2.24
53 54 8.618677 CAGAATGATGATATGTGCTAACAAACT 58.381 33.333 0.00 0.00 38.05 2.66
54 55 8.615211 TCAGAATGATGATATGTGCTAACAAAC 58.385 33.333 0.00 0.00 42.56 2.93
55 56 8.735692 TCAGAATGATGATATGTGCTAACAAA 57.264 30.769 0.00 0.00 42.56 2.83
68 69 8.960351 CTGCACACAGAGTTTCAGAATGATGAT 61.960 40.741 0.00 0.00 46.68 2.45
69 70 7.727591 CTGCACACAGAGTTTCAGAATGATGA 61.728 42.308 0.00 0.00 46.68 2.92
70 71 5.617087 CTGCACACAGAGTTTCAGAATGATG 60.617 44.000 0.00 0.00 46.68 3.07
71 72 4.454847 CTGCACACAGAGTTTCAGAATGAT 59.545 41.667 0.00 0.00 46.68 2.45
86 87 2.130272 TGTTGGGTAAACTGCACACA 57.870 45.000 0.00 0.00 39.70 3.72
87 88 3.726291 AATGTTGGGTAAACTGCACAC 57.274 42.857 0.00 0.00 39.70 3.82
88 89 4.261238 CGTAAATGTTGGGTAAACTGCACA 60.261 41.667 0.00 0.00 39.70 4.57
89 90 4.223659 CGTAAATGTTGGGTAAACTGCAC 58.776 43.478 0.00 0.00 39.70 4.57
90 91 3.253677 CCGTAAATGTTGGGTAAACTGCA 59.746 43.478 0.00 0.00 39.70 4.41
91 92 3.366577 CCCGTAAATGTTGGGTAAACTGC 60.367 47.826 0.00 0.00 39.70 4.40
92 93 3.191791 CCCCGTAAATGTTGGGTAAACTG 59.808 47.826 0.00 0.00 41.63 3.16
93 94 3.074242 TCCCCGTAAATGTTGGGTAAACT 59.926 43.478 0.00 0.00 41.63 2.66
94 95 3.419943 TCCCCGTAAATGTTGGGTAAAC 58.580 45.455 0.00 0.00 41.63 2.01
95 96 3.688235 CTCCCCGTAAATGTTGGGTAAA 58.312 45.455 0.00 0.00 41.63 2.01
96 97 2.618559 GCTCCCCGTAAATGTTGGGTAA 60.619 50.000 0.00 0.00 41.63 2.85
97 98 1.065272 GCTCCCCGTAAATGTTGGGTA 60.065 52.381 0.00 0.00 41.63 3.69
98 99 0.323087 GCTCCCCGTAAATGTTGGGT 60.323 55.000 0.00 0.00 41.63 4.51
99 100 0.322997 TGCTCCCCGTAAATGTTGGG 60.323 55.000 0.00 0.00 42.92 4.12
100 101 1.094785 CTGCTCCCCGTAAATGTTGG 58.905 55.000 0.00 0.00 0.00 3.77
101 102 1.737793 GTCTGCTCCCCGTAAATGTTG 59.262 52.381 0.00 0.00 0.00 3.33
102 103 1.674817 CGTCTGCTCCCCGTAAATGTT 60.675 52.381 0.00 0.00 0.00 2.71
103 104 0.108329 CGTCTGCTCCCCGTAAATGT 60.108 55.000 0.00 0.00 0.00 2.71
104 105 0.108329 ACGTCTGCTCCCCGTAAATG 60.108 55.000 0.00 0.00 32.22 2.32
105 106 1.477553 TACGTCTGCTCCCCGTAAAT 58.522 50.000 0.00 0.00 34.47 1.40
106 107 1.135527 CATACGTCTGCTCCCCGTAAA 59.864 52.381 0.00 0.00 40.08 2.01
107 108 0.742505 CATACGTCTGCTCCCCGTAA 59.257 55.000 0.00 0.00 40.08 3.18
108 109 1.105167 CCATACGTCTGCTCCCCGTA 61.105 60.000 0.00 0.00 40.82 4.02
109 110 2.423898 CCATACGTCTGCTCCCCGT 61.424 63.158 0.00 0.00 38.53 5.28
110 111 2.417516 CCATACGTCTGCTCCCCG 59.582 66.667 0.00 0.00 0.00 5.73
111 112 1.113517 TAGCCATACGTCTGCTCCCC 61.114 60.000 9.34 0.00 36.57 4.81
112 113 0.032267 GTAGCCATACGTCTGCTCCC 59.968 60.000 9.34 0.19 36.57 4.30
113 114 0.744874 TGTAGCCATACGTCTGCTCC 59.255 55.000 9.34 0.37 36.57 4.70
114 115 2.194271 GTTGTAGCCATACGTCTGCTC 58.806 52.381 9.34 3.92 36.57 4.26
115 116 1.548719 TGTTGTAGCCATACGTCTGCT 59.451 47.619 10.65 10.65 39.10 4.24
116 117 1.659098 GTGTTGTAGCCATACGTCTGC 59.341 52.381 0.00 0.00 34.39 4.26
117 118 1.917955 CGTGTTGTAGCCATACGTCTG 59.082 52.381 0.00 0.00 34.39 3.51
118 119 1.542915 ACGTGTTGTAGCCATACGTCT 59.457 47.619 0.00 0.00 39.18 4.18
119 120 1.916000 GACGTGTTGTAGCCATACGTC 59.084 52.381 11.60 11.60 45.49 4.34
120 121 1.542915 AGACGTGTTGTAGCCATACGT 59.457 47.619 0.00 0.00 43.16 3.57
121 122 2.273370 AGACGTGTTGTAGCCATACG 57.727 50.000 0.00 0.00 37.47 3.06
122 123 4.990257 TCTTAGACGTGTTGTAGCCATAC 58.010 43.478 0.00 0.00 0.00 2.39
123 124 5.221185 GGATCTTAGACGTGTTGTAGCCATA 60.221 44.000 0.00 0.00 0.00 2.74
124 125 4.441634 GGATCTTAGACGTGTTGTAGCCAT 60.442 45.833 0.00 0.00 0.00 4.40
125 126 3.119245 GGATCTTAGACGTGTTGTAGCCA 60.119 47.826 0.00 0.00 0.00 4.75
126 127 3.445857 GGATCTTAGACGTGTTGTAGCC 58.554 50.000 0.00 0.00 0.00 3.93
127 128 3.106672 CGGATCTTAGACGTGTTGTAGC 58.893 50.000 0.00 0.00 0.00 3.58
128 129 3.376234 TCCGGATCTTAGACGTGTTGTAG 59.624 47.826 0.00 0.00 0.00 2.74
129 130 3.346315 TCCGGATCTTAGACGTGTTGTA 58.654 45.455 0.00 0.00 0.00 2.41
130 131 2.165167 TCCGGATCTTAGACGTGTTGT 58.835 47.619 0.00 0.00 0.00 3.32
131 132 2.933495 TCCGGATCTTAGACGTGTTG 57.067 50.000 0.00 0.00 0.00 3.33
132 133 2.416972 GCTTCCGGATCTTAGACGTGTT 60.417 50.000 4.15 0.00 0.00 3.32
133 134 1.134560 GCTTCCGGATCTTAGACGTGT 59.865 52.381 4.15 0.00 0.00 4.49
134 135 1.405821 AGCTTCCGGATCTTAGACGTG 59.594 52.381 4.15 0.00 0.00 4.49
135 136 1.405821 CAGCTTCCGGATCTTAGACGT 59.594 52.381 4.15 0.00 0.00 4.34
136 137 1.269309 CCAGCTTCCGGATCTTAGACG 60.269 57.143 4.15 0.00 0.00 4.18
137 138 1.069358 CCCAGCTTCCGGATCTTAGAC 59.931 57.143 4.15 0.00 0.00 2.59
138 139 1.414158 CCCAGCTTCCGGATCTTAGA 58.586 55.000 4.15 0.00 0.00 2.10
139 140 0.394565 CCCCAGCTTCCGGATCTTAG 59.605 60.000 4.15 0.00 0.00 2.18
140 141 1.696097 GCCCCAGCTTCCGGATCTTA 61.696 60.000 4.15 0.00 35.50 2.10
141 142 3.049080 GCCCCAGCTTCCGGATCTT 62.049 63.158 4.15 0.00 35.50 2.40
142 143 3.483869 GCCCCAGCTTCCGGATCT 61.484 66.667 4.15 2.36 35.50 2.75
152 153 2.125350 CTGAACTCGAGCCCCAGC 60.125 66.667 13.61 0.00 40.32 4.85
153 154 1.515020 CTCTGAACTCGAGCCCCAG 59.485 63.158 13.61 16.36 0.00 4.45
154 155 1.984570 CCTCTGAACTCGAGCCCCA 60.985 63.158 13.61 7.07 0.00 4.96
155 156 2.896443 CCTCTGAACTCGAGCCCC 59.104 66.667 13.61 2.14 0.00 5.80
156 157 2.185608 GCCTCTGAACTCGAGCCC 59.814 66.667 13.61 4.93 0.00 5.19
157 158 2.202676 CGCCTCTGAACTCGAGCC 60.203 66.667 13.61 5.33 0.00 4.70
158 159 1.803519 CACGCCTCTGAACTCGAGC 60.804 63.158 13.61 0.00 0.00 5.03
159 160 1.153939 CCACGCCTCTGAACTCGAG 60.154 63.158 11.84 11.84 0.00 4.04
160 161 1.587043 CTCCACGCCTCTGAACTCGA 61.587 60.000 0.00 0.00 0.00 4.04
161 162 1.153939 CTCCACGCCTCTGAACTCG 60.154 63.158 0.00 0.00 0.00 4.18
162 163 1.216710 CCTCCACGCCTCTGAACTC 59.783 63.158 0.00 0.00 0.00 3.01
163 164 1.228894 TCCTCCACGCCTCTGAACT 60.229 57.895 0.00 0.00 0.00 3.01
164 165 1.216710 CTCCTCCACGCCTCTGAAC 59.783 63.158 0.00 0.00 0.00 3.18
165 166 0.324738 ATCTCCTCCACGCCTCTGAA 60.325 55.000 0.00 0.00 0.00 3.02
166 167 1.039785 CATCTCCTCCACGCCTCTGA 61.040 60.000 0.00 0.00 0.00 3.27
167 168 1.326213 ACATCTCCTCCACGCCTCTG 61.326 60.000 0.00 0.00 0.00 3.35
168 169 0.616111 AACATCTCCTCCACGCCTCT 60.616 55.000 0.00 0.00 0.00 3.69
169 170 0.179097 GAACATCTCCTCCACGCCTC 60.179 60.000 0.00 0.00 0.00 4.70
170 171 1.901085 GAACATCTCCTCCACGCCT 59.099 57.895 0.00 0.00 0.00 5.52
171 172 1.519455 CGAACATCTCCTCCACGCC 60.519 63.158 0.00 0.00 0.00 5.68
172 173 0.802607 GTCGAACATCTCCTCCACGC 60.803 60.000 0.00 0.00 0.00 5.34
173 174 0.523546 CGTCGAACATCTCCTCCACG 60.524 60.000 0.00 0.00 0.00 4.94
174 175 0.809385 TCGTCGAACATCTCCTCCAC 59.191 55.000 0.00 0.00 0.00 4.02
175 176 0.809385 GTCGTCGAACATCTCCTCCA 59.191 55.000 0.00 0.00 0.00 3.86
176 177 1.064357 GAGTCGTCGAACATCTCCTCC 59.936 57.143 0.00 0.00 0.00 4.30
177 178 2.461897 GAGTCGTCGAACATCTCCTC 57.538 55.000 0.00 0.00 0.00 3.71
185 186 1.849976 ACTCCACCGAGTCGTCGAAC 61.850 60.000 12.31 0.00 46.90 3.95
186 187 1.598962 ACTCCACCGAGTCGTCGAA 60.599 57.895 12.31 0.00 46.90 3.71
187 188 2.031616 ACTCCACCGAGTCGTCGA 59.968 61.111 12.31 2.68 46.90 4.20
194 195 0.734253 CTTTGAGCGACTCCACCGAG 60.734 60.000 4.73 0.00 42.32 4.63
195 196 1.289066 CTTTGAGCGACTCCACCGA 59.711 57.895 4.73 0.00 0.00 4.69
196 197 2.383527 GCTTTGAGCGACTCCACCG 61.384 63.158 4.73 0.00 0.00 4.94
197 198 3.567473 GCTTTGAGCGACTCCACC 58.433 61.111 4.73 0.00 0.00 4.61
216 217 3.026879 CTCGCGCAGATAGCCGTG 61.027 66.667 8.75 0.00 41.38 4.94
217 218 4.271816 CCTCGCGCAGATAGCCGT 62.272 66.667 8.75 0.00 41.38 5.68
240 241 3.993234 CGCTCATCCGCATCACGC 61.993 66.667 0.00 0.00 41.76 5.34
241 242 3.333189 CCGCTCATCCGCATCACG 61.333 66.667 0.00 0.00 43.15 4.35
242 243 2.106938 TCCGCTCATCCGCATCAC 59.893 61.111 0.00 0.00 0.00 3.06
243 244 2.106938 GTCCGCTCATCCGCATCA 59.893 61.111 0.00 0.00 0.00 3.07
244 245 1.953138 CTGTCCGCTCATCCGCATC 60.953 63.158 0.00 0.00 0.00 3.91
245 246 2.107750 CTGTCCGCTCATCCGCAT 59.892 61.111 0.00 0.00 0.00 4.73
246 247 4.147449 CCTGTCCGCTCATCCGCA 62.147 66.667 0.00 0.00 0.00 5.69
247 248 3.157217 ATCCTGTCCGCTCATCCGC 62.157 63.158 0.00 0.00 0.00 5.54
248 249 1.006805 GATCCTGTCCGCTCATCCG 60.007 63.158 0.00 0.00 0.00 4.18
249 250 1.006805 CGATCCTGTCCGCTCATCC 60.007 63.158 0.00 0.00 0.00 3.51
250 251 0.600557 ATCGATCCTGTCCGCTCATC 59.399 55.000 0.00 0.00 0.00 2.92
251 252 0.600557 GATCGATCCTGTCCGCTCAT 59.399 55.000 14.76 0.00 0.00 2.90
252 253 1.456196 GGATCGATCCTGTCCGCTCA 61.456 60.000 32.91 0.00 43.73 4.26
253 254 1.287503 GGATCGATCCTGTCCGCTC 59.712 63.158 32.91 6.95 43.73 5.03
254 255 2.203771 GGGATCGATCCTGTCCGCT 61.204 63.158 36.72 0.00 46.35 5.52
255 256 2.340443 GGGATCGATCCTGTCCGC 59.660 66.667 36.72 19.80 46.35 5.54
256 257 2.645567 CGGGATCGATCCTGTCCG 59.354 66.667 35.79 28.34 46.18 4.79
276 277 0.755686 CTCATCTTCTTCCCTCCGGG 59.244 60.000 0.00 0.00 46.11 5.73
277 278 0.755686 CCTCATCTTCTTCCCTCCGG 59.244 60.000 0.00 0.00 0.00 5.14
278 279 0.105778 GCCTCATCTTCTTCCCTCCG 59.894 60.000 0.00 0.00 0.00 4.63
279 280 0.472044 GGCCTCATCTTCTTCCCTCC 59.528 60.000 0.00 0.00 0.00 4.30
280 281 0.105778 CGGCCTCATCTTCTTCCCTC 59.894 60.000 0.00 0.00 0.00 4.30
281 282 0.618968 ACGGCCTCATCTTCTTCCCT 60.619 55.000 0.00 0.00 0.00 4.20
282 283 0.462759 CACGGCCTCATCTTCTTCCC 60.463 60.000 0.00 0.00 0.00 3.97
283 284 0.462759 CCACGGCCTCATCTTCTTCC 60.463 60.000 0.00 0.00 0.00 3.46
284 285 0.250513 ACCACGGCCTCATCTTCTTC 59.749 55.000 0.00 0.00 0.00 2.87
285 286 0.036010 CACCACGGCCTCATCTTCTT 60.036 55.000 0.00 0.00 0.00 2.52
286 287 1.599047 CACCACGGCCTCATCTTCT 59.401 57.895 0.00 0.00 0.00 2.85
287 288 1.450312 CCACCACGGCCTCATCTTC 60.450 63.158 0.00 0.00 0.00 2.87
288 289 2.224159 ACCACCACGGCCTCATCTT 61.224 57.895 0.00 0.00 39.03 2.40
289 290 2.607750 ACCACCACGGCCTCATCT 60.608 61.111 0.00 0.00 39.03 2.90
290 291 2.436646 CACCACCACGGCCTCATC 60.437 66.667 0.00 0.00 39.03 2.92
291 292 4.722700 GCACCACCACGGCCTCAT 62.723 66.667 0.00 0.00 39.03 2.90
298 299 2.842394 CTAGAGCAGGCACCACCACG 62.842 65.000 0.00 0.00 43.14 4.94
299 300 1.078848 CTAGAGCAGGCACCACCAC 60.079 63.158 0.00 0.00 43.14 4.16
300 301 0.835971 TTCTAGAGCAGGCACCACCA 60.836 55.000 0.00 0.00 43.14 4.17
301 302 0.107945 CTTCTAGAGCAGGCACCACC 60.108 60.000 0.00 0.00 39.61 4.61
302 303 3.450028 CTTCTAGAGCAGGCACCAC 57.550 57.895 0.00 0.00 0.00 4.16
312 313 9.624697 CTAGTAATAGCTGAAATGCTTCTAGAG 57.375 37.037 0.00 0.00 43.74 2.43
313 314 9.137459 ACTAGTAATAGCTGAAATGCTTCTAGA 57.863 33.333 0.00 0.00 43.74 2.43
316 317 8.919145 AGTACTAGTAATAGCTGAAATGCTTCT 58.081 33.333 3.61 0.00 43.74 2.85
319 320 9.357161 ACTAGTACTAGTAATAGCTGAAATGCT 57.643 33.333 29.96 10.24 43.98 3.79
335 336 8.012809 CGCATTCTTCTCATGTACTAGTACTAG 58.987 40.741 28.56 25.30 37.00 2.57
336 337 7.498239 ACGCATTCTTCTCATGTACTAGTACTA 59.502 37.037 28.56 17.69 37.00 1.82
337 338 6.319152 ACGCATTCTTCTCATGTACTAGTACT 59.681 38.462 28.56 14.70 37.00 2.73
338 339 6.496571 ACGCATTCTTCTCATGTACTAGTAC 58.503 40.000 23.58 23.58 36.63 2.73
339 340 6.694877 ACGCATTCTTCTCATGTACTAGTA 57.305 37.500 0.00 0.00 0.00 1.82
340 341 5.584253 ACGCATTCTTCTCATGTACTAGT 57.416 39.130 0.00 0.00 0.00 2.57
341 342 5.460419 GGAACGCATTCTTCTCATGTACTAG 59.540 44.000 0.00 0.00 34.98 2.57
342 343 5.348986 GGAACGCATTCTTCTCATGTACTA 58.651 41.667 0.00 0.00 34.98 1.82
343 344 4.184629 GGAACGCATTCTTCTCATGTACT 58.815 43.478 0.00 0.00 34.98 2.73
344 345 3.309954 GGGAACGCATTCTTCTCATGTAC 59.690 47.826 0.00 0.00 34.98 2.90
345 346 3.197766 AGGGAACGCATTCTTCTCATGTA 59.802 43.478 0.00 0.00 34.98 2.29
346 347 2.026822 AGGGAACGCATTCTTCTCATGT 60.027 45.455 0.00 0.00 34.98 3.21
347 348 2.636830 AGGGAACGCATTCTTCTCATG 58.363 47.619 0.00 0.00 34.98 3.07
348 349 3.356529 AAGGGAACGCATTCTTCTCAT 57.643 42.857 0.00 0.00 34.98 2.90
349 350 2.813754 CAAAGGGAACGCATTCTTCTCA 59.186 45.455 0.00 0.00 34.98 3.27
350 351 2.814336 ACAAAGGGAACGCATTCTTCTC 59.186 45.455 0.00 0.00 34.98 2.87
351 352 2.863809 ACAAAGGGAACGCATTCTTCT 58.136 42.857 0.00 0.00 34.98 2.85
352 353 3.243401 ACAACAAAGGGAACGCATTCTTC 60.243 43.478 0.00 0.00 34.98 2.87
353 354 2.693074 ACAACAAAGGGAACGCATTCTT 59.307 40.909 0.00 0.00 34.98 2.52
354 355 2.293399 GACAACAAAGGGAACGCATTCT 59.707 45.455 0.00 0.00 34.98 2.40
355 356 2.293399 AGACAACAAAGGGAACGCATTC 59.707 45.455 0.00 0.00 0.00 2.67
356 357 2.306847 AGACAACAAAGGGAACGCATT 58.693 42.857 0.00 0.00 0.00 3.56
357 358 1.981256 AGACAACAAAGGGAACGCAT 58.019 45.000 0.00 0.00 0.00 4.73
358 359 1.757682 AAGACAACAAAGGGAACGCA 58.242 45.000 0.00 0.00 0.00 5.24
359 360 3.314357 ACTTAAGACAACAAAGGGAACGC 59.686 43.478 10.09 0.00 0.00 4.84
360 361 5.296035 AGAACTTAAGACAACAAAGGGAACG 59.704 40.000 10.09 0.00 0.00 3.95
361 362 6.495706 CAGAACTTAAGACAACAAAGGGAAC 58.504 40.000 10.09 0.00 0.00 3.62
362 363 5.067283 GCAGAACTTAAGACAACAAAGGGAA 59.933 40.000 10.09 0.00 0.00 3.97
363 364 4.578928 GCAGAACTTAAGACAACAAAGGGA 59.421 41.667 10.09 0.00 0.00 4.20
364 365 4.580580 AGCAGAACTTAAGACAACAAAGGG 59.419 41.667 10.09 0.00 0.00 3.95
365 366 5.757850 AGCAGAACTTAAGACAACAAAGG 57.242 39.130 10.09 0.00 0.00 3.11
366 367 6.473455 CCAAAGCAGAACTTAAGACAACAAAG 59.527 38.462 10.09 0.00 37.75 2.77
367 368 6.329496 CCAAAGCAGAACTTAAGACAACAAA 58.671 36.000 10.09 0.00 37.75 2.83
368 369 5.163561 CCCAAAGCAGAACTTAAGACAACAA 60.164 40.000 10.09 0.00 37.75 2.83
369 370 4.338118 CCCAAAGCAGAACTTAAGACAACA 59.662 41.667 10.09 0.00 37.75 3.33
370 371 4.793028 GCCCAAAGCAGAACTTAAGACAAC 60.793 45.833 10.09 0.00 42.97 3.32
371 372 3.317993 GCCCAAAGCAGAACTTAAGACAA 59.682 43.478 10.09 0.00 42.97 3.18
372 373 2.884639 GCCCAAAGCAGAACTTAAGACA 59.115 45.455 10.09 0.00 42.97 3.41
373 374 3.560902 GCCCAAAGCAGAACTTAAGAC 57.439 47.619 10.09 2.97 42.97 3.01
392 393 1.003116 CGCAGAGTGGCAATAGAATGC 60.003 52.381 0.00 0.00 45.67 3.56
393 394 2.554142 TCGCAGAGTGGCAATAGAATG 58.446 47.619 0.00 0.00 0.00 2.67
394 395 2.988010 TCGCAGAGTGGCAATAGAAT 57.012 45.000 0.00 0.00 0.00 2.40
407 408 3.706802 TTTTTGCAATTCACTCGCAGA 57.293 38.095 0.00 0.00 36.91 4.26
528 545 6.202937 CCTTGTCATAAACGCACTTAAAACA 58.797 36.000 0.00 0.00 0.00 2.83
553 572 1.035385 CCTTGTCATAAACGGGCCCC 61.035 60.000 18.66 0.00 0.00 5.80
554 573 1.035385 CCCTTGTCATAAACGGGCCC 61.035 60.000 13.57 13.57 0.00 5.80
555 574 1.035385 CCCCTTGTCATAAACGGGCC 61.035 60.000 0.00 0.00 33.47 5.80
556 575 1.035385 CCCCCTTGTCATAAACGGGC 61.035 60.000 0.00 0.00 33.47 6.13
557 576 3.184736 CCCCCTTGTCATAAACGGG 57.815 57.895 0.00 0.00 34.62 5.28
595 614 1.887242 GCCGTGTGAACAGTGCTGA 60.887 57.895 6.17 0.00 0.00 4.26
1201 1237 4.462508 TTGCACAAAACATCAGGTTCAA 57.537 36.364 0.00 0.00 39.29 2.69
1529 1569 9.547753 ACTAATCCACATGCTATAAAGTAACAG 57.452 33.333 0.00 0.00 0.00 3.16
2122 2200 1.005097 TCAAGCTCATCAATGTGGGCT 59.995 47.619 4.73 4.73 33.58 5.19
2526 6604 3.335356 AAGATGGGCAGGTGGAGCG 62.335 63.158 0.00 0.00 0.00 5.03
2538 6616 0.747283 GAGCAGGTGGAGCAAGATGG 60.747 60.000 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.