Multiple sequence alignment - TraesCS7D01G248200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G248200 chr7D 100.000 5569 0 0 1 5569 219710838 219716406 0.000000e+00 10285.0
1 TraesCS7D01G248200 chr7D 93.141 729 21 7 3167 3882 234345536 234346248 0.000000e+00 1042.0
2 TraesCS7D01G248200 chr7D 84.524 84 9 4 3571 3652 176160835 176160916 4.620000e-11 80.5
3 TraesCS7D01G248200 chr7B 93.320 2440 96 25 542 2947 180032732 180030326 0.000000e+00 3541.0
4 TraesCS7D01G248200 chr7B 93.346 1082 44 11 2945 4009 180030244 180029174 0.000000e+00 1574.0
5 TraesCS7D01G248200 chr7B 87.633 752 85 4 4824 5568 180009800 180009050 0.000000e+00 867.0
6 TraesCS7D01G248200 chr7B 79.692 325 37 8 4399 4722 180010123 180009827 2.030000e-49 207.0
7 TraesCS7D01G248200 chr7B 81.102 254 18 6 145 394 180033382 180033155 5.730000e-40 176.0
8 TraesCS7D01G248200 chr7B 82.249 169 10 9 4052 4203 180014931 180014766 1.630000e-25 128.0
9 TraesCS7D01G248200 chr7B 98.507 67 0 1 4000 4066 180015014 180014949 3.520000e-22 117.0
10 TraesCS7D01G248200 chr7A 93.054 2246 84 28 467 2689 232280031 232282227 0.000000e+00 3217.0
11 TraesCS7D01G248200 chr7A 92.228 1248 48 10 3086 4295 232282854 232284090 0.000000e+00 1722.0
12 TraesCS7D01G248200 chr7A 85.525 829 118 2 4740 5567 232338808 232339635 0.000000e+00 865.0
13 TraesCS7D01G248200 chr7A 87.151 537 41 8 4040 4554 232338015 232338545 8.040000e-163 584.0
14 TraesCS7D01G248200 chr7A 87.778 270 22 5 162 425 232279647 232279911 7.010000e-79 305.0
15 TraesCS7D01G248200 chr7A 89.524 105 8 1 2746 2847 232282640 232282744 4.530000e-26 130.0
16 TraesCS7D01G248200 chr3D 93.141 729 21 7 3167 3882 456654910 456655622 0.000000e+00 1042.0
17 TraesCS7D01G248200 chr3D 81.513 119 16 4 10 122 418372241 418372123 5.940000e-15 93.5
18 TraesCS7D01G248200 chrUn 94.406 286 3 1 3167 3439 478826410 478826695 1.430000e-115 427.0
19 TraesCS7D01G248200 chr6B 76.997 726 120 27 3110 3808 548627966 548627261 6.810000e-99 372.0
20 TraesCS7D01G248200 chr6B 78.077 260 37 12 2095 2353 548628978 548628738 4.500000e-31 147.0
21 TraesCS7D01G248200 chr6A 76.902 723 125 23 3112 3808 504891978 504891272 6.810000e-99 372.0
22 TraesCS7D01G248200 chr6A 78.462 260 36 12 2095 2353 504892998 504892758 9.660000e-33 152.0
23 TraesCS7D01G248200 chr6D 76.657 724 125 24 3112 3808 363870332 363869626 1.470000e-95 361.0
24 TraesCS7D01G248200 chr6D 78.462 260 36 12 2095 2353 363872994 363872754 9.660000e-33 152.0
25 TraesCS7D01G248200 chr5D 76.151 717 140 16 3110 3807 370120153 370120857 1.150000e-91 348.0
26 TraesCS7D01G248200 chr5D 76.559 465 73 26 1466 1906 370118461 370118913 7.260000e-54 222.0
27 TraesCS7D01G248200 chr1B 83.065 124 15 4 10 127 505049577 505049700 2.120000e-19 108.0
28 TraesCS7D01G248200 chr1B 78.151 119 20 5 10 122 185245593 185245711 2.780000e-08 71.3
29 TraesCS7D01G248200 chr2B 85.057 87 13 0 56 142 656509530 656509444 7.680000e-14 89.8
30 TraesCS7D01G248200 chr5B 80.672 119 17 3 10 122 415803550 415803668 2.760000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G248200 chr7D 219710838 219716406 5568 False 10285.000000 10285 100.0000 1 5569 1 chr7D.!!$F2 5568
1 TraesCS7D01G248200 chr7D 234345536 234346248 712 False 1042.000000 1042 93.1410 3167 3882 1 chr7D.!!$F3 715
2 TraesCS7D01G248200 chr7B 180029174 180033382 4208 True 1763.666667 3541 89.2560 145 4009 3 chr7B.!!$R3 3864
3 TraesCS7D01G248200 chr7B 180009050 180010123 1073 True 537.000000 867 83.6625 4399 5568 2 chr7B.!!$R1 1169
4 TraesCS7D01G248200 chr7A 232279647 232284090 4443 False 1343.500000 3217 90.6460 162 4295 4 chr7A.!!$F1 4133
5 TraesCS7D01G248200 chr7A 232338015 232339635 1620 False 724.500000 865 86.3380 4040 5567 2 chr7A.!!$F2 1527
6 TraesCS7D01G248200 chr3D 456654910 456655622 712 False 1042.000000 1042 93.1410 3167 3882 1 chr3D.!!$F1 715
7 TraesCS7D01G248200 chr6B 548627261 548628978 1717 True 259.500000 372 77.5370 2095 3808 2 chr6B.!!$R1 1713
8 TraesCS7D01G248200 chr6A 504891272 504892998 1726 True 262.000000 372 77.6820 2095 3808 2 chr6A.!!$R1 1713
9 TraesCS7D01G248200 chr6D 363869626 363872994 3368 True 256.500000 361 77.5595 2095 3808 2 chr6D.!!$R1 1713
10 TraesCS7D01G248200 chr5D 370118461 370120857 2396 False 285.000000 348 76.3550 1466 3807 2 chr5D.!!$F1 2341

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
589 1116 0.039256 CCACATCACCGGCAAACTTG 60.039 55.0 0.0 0.0 0.00 3.16 F
1151 1710 0.318762 ACCGAGTTCAGCTTCTCCAC 59.681 55.0 0.0 0.0 0.00 4.02 F
1753 2327 0.743345 GGTGTACATGGCCGACTTCC 60.743 60.0 0.0 0.0 0.00 3.46 F
2658 5804 0.730265 GCGTCAAACACAGACCAACA 59.270 50.0 0.0 0.0 32.41 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2455 5599 0.163788 GTGCAAGAATCACGTGTCGG 59.836 55.0 16.51 6.05 0.00 4.79 R
2456 5600 0.858583 TGTGCAAGAATCACGTGTCG 59.141 50.0 16.51 0.17 37.26 4.35 R
3062 6652 2.680339 CACTCTGTATCTCTCACTCGCA 59.320 50.0 0.00 0.00 0.00 5.10 R
4582 8301 0.029834 GTCAATGATGTGATGGCGGC 59.970 55.0 0.00 0.00 0.00 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.803329 AGCATCTTGGAGATTACCCAAT 57.197 40.909 0.00 0.00 42.23 3.16
22 23 4.723309 AGCATCTTGGAGATTACCCAATC 58.277 43.478 0.00 0.00 42.23 2.67
32 33 5.301835 AGATTACCCAATCTCATGGACTG 57.698 43.478 0.00 0.00 46.50 3.51
33 34 4.723789 AGATTACCCAATCTCATGGACTGT 59.276 41.667 0.00 0.00 46.50 3.55
34 35 5.905331 AGATTACCCAATCTCATGGACTGTA 59.095 40.000 0.00 0.00 46.50 2.74
35 36 6.386927 AGATTACCCAATCTCATGGACTGTAA 59.613 38.462 0.00 0.00 46.50 2.41
36 37 6.575244 TTACCCAATCTCATGGACTGTAAT 57.425 37.500 0.00 0.00 43.54 1.89
37 38 5.041191 ACCCAATCTCATGGACTGTAATC 57.959 43.478 0.00 0.00 43.54 1.75
38 39 4.474651 ACCCAATCTCATGGACTGTAATCA 59.525 41.667 0.00 0.00 43.54 2.57
39 40 5.061853 CCCAATCTCATGGACTGTAATCAG 58.938 45.833 0.00 0.00 43.54 2.90
40 41 4.514441 CCAATCTCATGGACTGTAATCAGC 59.486 45.833 0.00 0.00 44.77 4.26
41 42 5.121105 CAATCTCATGGACTGTAATCAGCA 58.879 41.667 0.00 0.00 44.77 4.41
42 43 4.824479 TCTCATGGACTGTAATCAGCAA 57.176 40.909 0.00 0.00 44.77 3.91
43 44 5.363562 TCTCATGGACTGTAATCAGCAAT 57.636 39.130 0.00 0.00 44.77 3.56
44 45 6.484364 TCTCATGGACTGTAATCAGCAATA 57.516 37.500 0.00 0.00 44.77 1.90
45 46 6.519382 TCTCATGGACTGTAATCAGCAATAG 58.481 40.000 0.00 0.00 44.77 1.73
46 47 5.614308 TCATGGACTGTAATCAGCAATAGG 58.386 41.667 0.00 0.00 44.77 2.57
47 48 4.422073 TGGACTGTAATCAGCAATAGGG 57.578 45.455 0.00 0.00 44.77 3.53
48 49 3.780294 TGGACTGTAATCAGCAATAGGGT 59.220 43.478 0.00 0.00 44.77 4.34
49 50 4.227300 TGGACTGTAATCAGCAATAGGGTT 59.773 41.667 0.00 0.00 44.77 4.11
50 51 5.427157 TGGACTGTAATCAGCAATAGGGTTA 59.573 40.000 0.00 0.00 44.77 2.85
51 52 6.101150 TGGACTGTAATCAGCAATAGGGTTAT 59.899 38.462 0.00 0.00 44.77 1.89
52 53 6.428159 GGACTGTAATCAGCAATAGGGTTATG 59.572 42.308 0.00 0.00 44.77 1.90
53 54 6.900194 ACTGTAATCAGCAATAGGGTTATGT 58.100 36.000 0.00 0.00 44.77 2.29
54 55 8.029782 ACTGTAATCAGCAATAGGGTTATGTA 57.970 34.615 0.00 0.00 44.77 2.29
55 56 8.660435 ACTGTAATCAGCAATAGGGTTATGTAT 58.340 33.333 0.00 0.00 44.77 2.29
56 57 8.846943 TGTAATCAGCAATAGGGTTATGTATG 57.153 34.615 0.00 0.00 0.00 2.39
57 58 8.436778 TGTAATCAGCAATAGGGTTATGTATGT 58.563 33.333 0.00 0.00 0.00 2.29
58 59 9.284968 GTAATCAGCAATAGGGTTATGTATGTT 57.715 33.333 0.00 0.00 0.00 2.71
59 60 7.986085 ATCAGCAATAGGGTTATGTATGTTC 57.014 36.000 0.00 0.00 0.00 3.18
60 61 6.296026 TCAGCAATAGGGTTATGTATGTTCC 58.704 40.000 0.00 0.00 0.00 3.62
61 62 6.101150 TCAGCAATAGGGTTATGTATGTTCCT 59.899 38.462 0.00 0.00 0.00 3.36
62 63 6.772716 CAGCAATAGGGTTATGTATGTTCCTT 59.227 38.462 0.00 0.00 0.00 3.36
63 64 6.998673 AGCAATAGGGTTATGTATGTTCCTTC 59.001 38.462 0.00 0.00 0.00 3.46
64 65 6.770785 GCAATAGGGTTATGTATGTTCCTTCA 59.229 38.462 0.00 0.00 0.00 3.02
65 66 7.284489 GCAATAGGGTTATGTATGTTCCTTCAA 59.716 37.037 0.00 0.00 0.00 2.69
66 67 9.184523 CAATAGGGTTATGTATGTTCCTTCAAA 57.815 33.333 0.00 0.00 0.00 2.69
67 68 8.980481 ATAGGGTTATGTATGTTCCTTCAAAG 57.020 34.615 0.00 0.00 0.00 2.77
68 69 7.027874 AGGGTTATGTATGTTCCTTCAAAGA 57.972 36.000 0.00 0.00 0.00 2.52
69 70 7.466804 AGGGTTATGTATGTTCCTTCAAAGAA 58.533 34.615 0.00 0.00 0.00 2.52
70 71 8.116026 AGGGTTATGTATGTTCCTTCAAAGAAT 58.884 33.333 0.00 0.00 0.00 2.40
71 72 9.403583 GGGTTATGTATGTTCCTTCAAAGAATA 57.596 33.333 0.00 0.00 0.00 1.75
77 78 9.295825 TGTATGTTCCTTCAAAGAATAATGTGT 57.704 29.630 0.00 0.00 0.00 3.72
80 81 8.335532 TGTTCCTTCAAAGAATAATGTGTAGG 57.664 34.615 0.00 0.00 0.00 3.18
81 82 8.160765 TGTTCCTTCAAAGAATAATGTGTAGGA 58.839 33.333 0.00 0.00 0.00 2.94
82 83 9.178758 GTTCCTTCAAAGAATAATGTGTAGGAT 57.821 33.333 0.00 0.00 0.00 3.24
85 86 8.778358 CCTTCAAAGAATAATGTGTAGGATAGC 58.222 37.037 0.00 0.00 0.00 2.97
86 87 9.330063 CTTCAAAGAATAATGTGTAGGATAGCA 57.670 33.333 0.00 0.00 0.00 3.49
87 88 9.851686 TTCAAAGAATAATGTGTAGGATAGCAT 57.148 29.630 0.00 0.00 0.00 3.79
88 89 9.494271 TCAAAGAATAATGTGTAGGATAGCATC 57.506 33.333 0.00 0.00 0.00 3.91
89 90 9.499479 CAAAGAATAATGTGTAGGATAGCATCT 57.501 33.333 0.00 0.00 0.00 2.90
97 98 7.891498 TGTGTAGGATAGCATCTTACTTACA 57.109 36.000 14.69 10.77 41.06 2.41
98 99 8.478775 TGTGTAGGATAGCATCTTACTTACAT 57.521 34.615 14.69 0.00 41.06 2.29
99 100 9.582648 TGTGTAGGATAGCATCTTACTTACATA 57.417 33.333 14.69 0.00 41.06 2.29
102 103 9.575783 GTAGGATAGCATCTTACTTACATAAGC 57.424 37.037 9.58 0.00 38.42 3.09
103 104 8.429237 AGGATAGCATCTTACTTACATAAGCT 57.571 34.615 0.00 0.00 36.79 3.74
104 105 8.875168 AGGATAGCATCTTACTTACATAAGCTT 58.125 33.333 3.48 3.48 36.79 3.74
105 106 9.495572 GGATAGCATCTTACTTACATAAGCTTT 57.504 33.333 3.20 0.00 36.79 3.51
108 109 8.792830 AGCATCTTACTTACATAAGCTTTGAA 57.207 30.769 3.20 0.00 36.79 2.69
109 110 9.231297 AGCATCTTACTTACATAAGCTTTGAAA 57.769 29.630 3.20 0.00 36.79 2.69
110 111 9.278734 GCATCTTACTTACATAAGCTTTGAAAC 57.721 33.333 3.20 0.00 36.79 2.78
113 114 9.332502 TCTTACTTACATAAGCTTTGAAACACA 57.667 29.630 3.20 0.00 36.79 3.72
121 122 9.593134 ACATAAGCTTTGAAACACATTAAAACA 57.407 25.926 3.20 0.00 0.00 2.83
125 126 9.824534 AAGCTTTGAAACACATTAAAACAAAAG 57.175 25.926 0.00 0.00 0.00 2.27
126 127 8.998377 AGCTTTGAAACACATTAAAACAAAAGT 58.002 25.926 0.00 0.00 0.00 2.66
127 128 9.605955 GCTTTGAAACACATTAAAACAAAAGTT 57.394 25.926 0.00 0.00 0.00 2.66
134 135 8.628882 ACACATTAAAACAAAAGTTAGTCTGC 57.371 30.769 0.00 0.00 0.00 4.26
135 136 7.704899 ACACATTAAAACAAAAGTTAGTCTGCC 59.295 33.333 0.00 0.00 0.00 4.85
136 137 6.915843 ACATTAAAACAAAAGTTAGTCTGCCG 59.084 34.615 0.00 0.00 0.00 5.69
137 138 4.976224 AAAACAAAAGTTAGTCTGCCGT 57.024 36.364 0.00 0.00 0.00 5.68
138 139 7.551035 TTAAAACAAAAGTTAGTCTGCCGTA 57.449 32.000 0.00 0.00 0.00 4.02
139 140 5.413969 AAACAAAAGTTAGTCTGCCGTAC 57.586 39.130 0.00 0.00 0.00 3.67
140 141 4.062677 ACAAAAGTTAGTCTGCCGTACA 57.937 40.909 0.00 0.00 0.00 2.90
157 158 8.768957 TGCCGTACAGATTATACTACTACTAG 57.231 38.462 0.00 0.00 0.00 2.57
185 186 2.563179 AGTACAACGAGCATCACCTTCT 59.437 45.455 0.00 0.00 33.17 2.85
194 195 2.832129 AGCATCACCTTCTTTCCTCGTA 59.168 45.455 0.00 0.00 0.00 3.43
205 206 3.509967 TCTTTCCTCGTATGAGAGCACAA 59.490 43.478 13.79 0.00 45.57 3.33
209 213 3.316588 TCCTCGTATGAGAGCACAATCTC 59.683 47.826 13.79 0.00 45.57 2.75
213 217 4.047822 CGTATGAGAGCACAATCTCCTTC 58.952 47.826 1.54 0.00 44.30 3.46
233 237 4.053009 TCAGAACCAATGAGAGAGAGGA 57.947 45.455 0.00 0.00 0.00 3.71
254 280 4.321230 GGATTTGATGCCGAAGAGTTTGTT 60.321 41.667 0.00 0.00 0.00 2.83
255 281 3.896648 TTGATGCCGAAGAGTTTGTTC 57.103 42.857 0.00 0.00 0.00 3.18
256 282 2.151202 TGATGCCGAAGAGTTTGTTCC 58.849 47.619 0.00 0.00 0.00 3.62
257 283 1.128692 GATGCCGAAGAGTTTGTTCCG 59.871 52.381 0.00 0.00 0.00 4.30
258 284 0.882927 TGCCGAAGAGTTTGTTCCGG 60.883 55.000 0.00 0.00 0.00 5.14
259 285 0.883370 GCCGAAGAGTTTGTTCCGGT 60.883 55.000 0.00 0.00 0.00 5.28
260 286 1.589803 CCGAAGAGTTTGTTCCGGTT 58.410 50.000 0.00 0.00 0.00 4.44
261 287 2.758009 CCGAAGAGTTTGTTCCGGTTA 58.242 47.619 0.00 0.00 0.00 2.85
262 288 3.132925 CCGAAGAGTTTGTTCCGGTTAA 58.867 45.455 0.00 0.00 0.00 2.01
263 289 3.185797 CCGAAGAGTTTGTTCCGGTTAAG 59.814 47.826 0.00 0.00 0.00 1.85
264 290 3.363673 CGAAGAGTTTGTTCCGGTTAAGC 60.364 47.826 0.00 0.00 0.00 3.09
265 291 3.202829 AGAGTTTGTTCCGGTTAAGCA 57.797 42.857 0.00 0.00 0.00 3.91
266 292 3.751518 AGAGTTTGTTCCGGTTAAGCAT 58.248 40.909 0.00 0.00 0.00 3.79
267 293 4.142038 AGAGTTTGTTCCGGTTAAGCATT 58.858 39.130 0.00 0.00 0.00 3.56
268 294 5.310451 AGAGTTTGTTCCGGTTAAGCATTA 58.690 37.500 0.00 0.00 0.00 1.90
269 295 5.944007 AGAGTTTGTTCCGGTTAAGCATTAT 59.056 36.000 0.00 0.00 0.00 1.28
270 296 7.107542 AGAGTTTGTTCCGGTTAAGCATTATA 58.892 34.615 0.00 0.00 0.00 0.98
271 297 7.065443 AGAGTTTGTTCCGGTTAAGCATTATAC 59.935 37.037 0.00 0.00 0.00 1.47
272 298 6.882678 AGTTTGTTCCGGTTAAGCATTATACT 59.117 34.615 0.00 0.00 0.00 2.12
282 308 8.139989 CGGTTAAGCATTATACTACCAGTAGTT 58.860 37.037 15.24 6.79 43.35 2.24
293 319 2.043992 ACCAGTAGTTGCACCACAGTA 58.956 47.619 0.00 0.00 0.00 2.74
303 331 2.942376 TGCACCACAGTACAAAGTTCAG 59.058 45.455 0.00 0.00 0.00 3.02
304 332 2.290641 GCACCACAGTACAAAGTTCAGG 59.709 50.000 0.00 0.00 0.00 3.86
308 336 4.881850 ACCACAGTACAAAGTTCAGGAAAG 59.118 41.667 0.00 0.00 0.00 2.62
311 339 6.094881 CCACAGTACAAAGTTCAGGAAAGAAA 59.905 38.462 0.00 0.00 0.00 2.52
312 340 7.189512 CACAGTACAAAGTTCAGGAAAGAAAG 58.810 38.462 0.00 0.00 0.00 2.62
313 341 7.065803 CACAGTACAAAGTTCAGGAAAGAAAGA 59.934 37.037 0.00 0.00 0.00 2.52
314 342 7.610305 ACAGTACAAAGTTCAGGAAAGAAAGAA 59.390 33.333 0.00 0.00 0.00 2.52
317 345 9.634163 GTACAAAGTTCAGGAAAGAAAGAAAAA 57.366 29.630 0.00 0.00 0.00 1.94
368 396 1.427819 GAACGCATGGCCCTAAACG 59.572 57.895 0.00 0.00 0.00 3.60
443 833 0.375106 GCTCCAGCGCAAACATAGTC 59.625 55.000 11.47 0.00 0.00 2.59
448 838 1.459209 CAGCGCAAACATAGTCGTCAA 59.541 47.619 11.47 0.00 0.00 3.18
481 1008 9.263446 TCAACTTACCAGTAGGAGTACATTTAT 57.737 33.333 0.00 0.00 38.69 1.40
529 1056 4.953940 ACCAGGCAAGAAATAGCAAAAA 57.046 36.364 0.00 0.00 0.00 1.94
530 1057 4.631131 ACCAGGCAAGAAATAGCAAAAAC 58.369 39.130 0.00 0.00 0.00 2.43
531 1058 3.674753 CCAGGCAAGAAATAGCAAAAACG 59.325 43.478 0.00 0.00 0.00 3.60
532 1059 4.298332 CAGGCAAGAAATAGCAAAAACGT 58.702 39.130 0.00 0.00 0.00 3.99
533 1060 4.382754 CAGGCAAGAAATAGCAAAAACGTC 59.617 41.667 0.00 0.00 0.00 4.34
534 1061 4.037446 AGGCAAGAAATAGCAAAAACGTCA 59.963 37.500 0.00 0.00 0.00 4.35
535 1062 4.923281 GGCAAGAAATAGCAAAAACGTCAT 59.077 37.500 0.00 0.00 0.00 3.06
536 1063 5.405269 GGCAAGAAATAGCAAAAACGTCATT 59.595 36.000 0.00 0.00 0.00 2.57
537 1064 6.291385 GCAAGAAATAGCAAAAACGTCATTG 58.709 36.000 8.48 8.48 0.00 2.82
545 1072 5.177374 GCAAAAACGTCATTGCTATCAAC 57.823 39.130 23.42 1.68 46.42 3.18
546 1073 4.917415 GCAAAAACGTCATTGCTATCAACT 59.083 37.500 23.42 0.00 46.42 3.16
547 1074 5.402270 GCAAAAACGTCATTGCTATCAACTT 59.598 36.000 23.42 0.00 46.42 2.66
548 1075 6.614162 GCAAAAACGTCATTGCTATCAACTTG 60.614 38.462 23.42 2.28 46.42 3.16
549 1076 3.747099 ACGTCATTGCTATCAACTTGC 57.253 42.857 0.00 0.00 34.60 4.01
550 1077 2.420022 ACGTCATTGCTATCAACTTGCC 59.580 45.455 0.00 0.00 34.60 4.52
551 1078 2.419673 CGTCATTGCTATCAACTTGCCA 59.580 45.455 0.00 0.00 34.60 4.92
552 1079 3.486375 CGTCATTGCTATCAACTTGCCAG 60.486 47.826 0.00 0.00 34.60 4.85
553 1080 3.441572 GTCATTGCTATCAACTTGCCAGT 59.558 43.478 0.00 0.00 34.60 4.00
554 1081 4.635765 GTCATTGCTATCAACTTGCCAGTA 59.364 41.667 0.00 0.00 34.60 2.74
555 1082 4.877823 TCATTGCTATCAACTTGCCAGTAG 59.122 41.667 0.00 0.00 34.60 2.57
556 1083 3.266510 TGCTATCAACTTGCCAGTAGG 57.733 47.619 0.00 0.00 38.23 3.18
557 1084 2.837591 TGCTATCAACTTGCCAGTAGGA 59.162 45.455 0.00 0.00 36.89 2.94
558 1085 3.118629 TGCTATCAACTTGCCAGTAGGAG 60.119 47.826 0.00 0.00 36.89 3.69
559 1086 3.118592 GCTATCAACTTGCCAGTAGGAGT 60.119 47.826 0.00 0.00 36.89 3.85
560 1087 4.099573 GCTATCAACTTGCCAGTAGGAGTA 59.900 45.833 0.00 0.00 36.89 2.59
561 1088 3.955650 TCAACTTGCCAGTAGGAGTAC 57.044 47.619 0.00 0.00 36.89 2.73
562 1089 3.236047 TCAACTTGCCAGTAGGAGTACA 58.764 45.455 0.00 0.00 36.89 2.90
563 1090 3.838317 TCAACTTGCCAGTAGGAGTACAT 59.162 43.478 0.00 0.00 36.89 2.29
564 1091 4.286032 TCAACTTGCCAGTAGGAGTACATT 59.714 41.667 0.00 0.00 36.89 2.71
565 1092 4.910458 ACTTGCCAGTAGGAGTACATTT 57.090 40.909 0.00 0.00 36.89 2.32
566 1093 6.014070 TCAACTTGCCAGTAGGAGTACATTTA 60.014 38.462 0.00 0.00 36.89 1.40
567 1094 5.731591 ACTTGCCAGTAGGAGTACATTTAC 58.268 41.667 0.00 0.00 36.89 2.01
568 1095 5.484290 ACTTGCCAGTAGGAGTACATTTACT 59.516 40.000 0.00 0.00 41.59 2.24
569 1096 6.666546 ACTTGCCAGTAGGAGTACATTTACTA 59.333 38.462 0.00 0.00 38.77 1.82
570 1097 6.461110 TGCCAGTAGGAGTACATTTACTAC 57.539 41.667 0.00 0.00 38.77 2.73
571 1098 5.361857 TGCCAGTAGGAGTACATTTACTACC 59.638 44.000 0.00 0.00 39.79 3.18
572 1099 5.361857 GCCAGTAGGAGTACATTTACTACCA 59.638 44.000 0.00 0.00 39.79 3.25
573 1100 6.682362 GCCAGTAGGAGTACATTTACTACCAC 60.682 46.154 0.00 0.00 39.79 4.16
574 1101 6.379133 CCAGTAGGAGTACATTTACTACCACA 59.621 42.308 3.17 0.00 39.79 4.17
575 1102 7.069578 CCAGTAGGAGTACATTTACTACCACAT 59.930 40.741 3.17 0.00 39.79 3.21
576 1103 8.136165 CAGTAGGAGTACATTTACTACCACATC 58.864 40.741 3.17 0.00 39.79 3.06
577 1104 7.837689 AGTAGGAGTACATTTACTACCACATCA 59.162 37.037 3.17 0.00 39.79 3.07
578 1105 6.875076 AGGAGTACATTTACTACCACATCAC 58.125 40.000 0.00 0.00 39.79 3.06
579 1106 6.047231 GGAGTACATTTACTACCACATCACC 58.953 44.000 0.00 0.00 38.77 4.02
580 1107 5.657474 AGTACATTTACTACCACATCACCG 58.343 41.667 0.00 0.00 36.73 4.94
581 1108 3.869065 ACATTTACTACCACATCACCGG 58.131 45.455 0.00 0.00 0.00 5.28
582 1109 2.389962 TTTACTACCACATCACCGGC 57.610 50.000 0.00 0.00 0.00 6.13
583 1110 1.268066 TTACTACCACATCACCGGCA 58.732 50.000 0.00 0.00 0.00 5.69
584 1111 1.268066 TACTACCACATCACCGGCAA 58.732 50.000 0.00 0.00 0.00 4.52
585 1112 0.398696 ACTACCACATCACCGGCAAA 59.601 50.000 0.00 0.00 0.00 3.68
586 1113 0.802494 CTACCACATCACCGGCAAAC 59.198 55.000 0.00 0.00 0.00 2.93
587 1114 0.398696 TACCACATCACCGGCAAACT 59.601 50.000 0.00 0.00 0.00 2.66
588 1115 0.467290 ACCACATCACCGGCAAACTT 60.467 50.000 0.00 0.00 0.00 2.66
589 1116 0.039256 CCACATCACCGGCAAACTTG 60.039 55.000 0.00 0.00 0.00 3.16
600 1127 0.576798 GCAAACTTGCGAAAACAGGC 59.423 50.000 0.00 0.00 45.11 4.85
601 1128 1.919918 CAAACTTGCGAAAACAGGCA 58.080 45.000 0.00 0.00 37.39 4.75
602 1129 2.266554 CAAACTTGCGAAAACAGGCAA 58.733 42.857 0.00 0.00 46.06 4.52
606 1133 2.949451 TTGCGAAAACAGGCAAGAAA 57.051 40.000 0.00 0.00 43.63 2.52
607 1134 3.451141 TTGCGAAAACAGGCAAGAAAT 57.549 38.095 0.00 0.00 43.63 2.17
608 1135 4.576216 TTGCGAAAACAGGCAAGAAATA 57.424 36.364 0.00 0.00 43.63 1.40
609 1136 4.159377 TGCGAAAACAGGCAAGAAATAG 57.841 40.909 0.00 0.00 35.98 1.73
610 1137 2.917343 GCGAAAACAGGCAAGAAATAGC 59.083 45.455 0.00 0.00 0.00 2.97
611 1138 3.611530 GCGAAAACAGGCAAGAAATAGCA 60.612 43.478 0.00 0.00 0.00 3.49
612 1139 4.545610 CGAAAACAGGCAAGAAATAGCAA 58.454 39.130 0.00 0.00 0.00 3.91
613 1140 4.981674 CGAAAACAGGCAAGAAATAGCAAA 59.018 37.500 0.00 0.00 0.00 3.68
614 1141 5.461737 CGAAAACAGGCAAGAAATAGCAAAA 59.538 36.000 0.00 0.00 0.00 2.44
618 1145 5.049828 ACAGGCAAGAAATAGCAAAAACAC 58.950 37.500 0.00 0.00 0.00 3.32
635 1162 0.940126 CACCATTGCTATCACTCCGC 59.060 55.000 0.00 0.00 0.00 5.54
656 1183 0.595588 CGATGAGATCTCCACTCCGG 59.404 60.000 20.03 0.00 33.95 5.14
680 1213 8.436200 CGGTTACAAACTTCTCAGAAAGATTAG 58.564 37.037 0.00 0.00 32.82 1.73
724 1257 1.899142 GGGCAGGAGATAAGCTAGGAG 59.101 57.143 0.00 0.00 0.00 3.69
727 1260 1.899142 CAGGAGATAAGCTAGGAGGCC 59.101 57.143 0.00 0.00 0.00 5.19
728 1261 0.892063 GGAGATAAGCTAGGAGGCCG 59.108 60.000 0.00 0.00 0.00 6.13
729 1262 0.892063 GAGATAAGCTAGGAGGCCGG 59.108 60.000 0.00 0.00 0.00 6.13
870 1419 1.817941 GGCGGCGGCAGAATCTAAA 60.818 57.895 29.41 0.00 42.47 1.85
875 1424 1.641577 GCGGCAGAATCTAAACTCGT 58.358 50.000 0.00 0.00 0.00 4.18
973 1527 0.318784 AACGCTGTTGAGGTCGTCTC 60.319 55.000 0.00 2.44 42.74 3.36
974 1528 1.173444 ACGCTGTTGAGGTCGTCTCT 61.173 55.000 9.22 0.00 42.86 3.10
990 1549 0.610687 CTCTCGGCCTCTTTCTTGGT 59.389 55.000 0.00 0.00 0.00 3.67
1151 1710 0.318762 ACCGAGTTCAGCTTCTCCAC 59.681 55.000 0.00 0.00 0.00 4.02
1213 1772 1.713830 GACGCCGACATAACCAAGC 59.286 57.895 0.00 0.00 0.00 4.01
1452 2014 1.376812 GGGGTTCGCGTTCCTCATT 60.377 57.895 5.77 0.00 0.00 2.57
1753 2327 0.743345 GGTGTACATGGCCGACTTCC 60.743 60.000 0.00 0.00 0.00 3.46
1767 2341 4.697756 TTCCAGGACGCCAAGCCG 62.698 66.667 0.00 0.00 0.00 5.52
1881 2458 2.031012 CTCAACTGCGTCCTGGCA 59.969 61.111 0.00 0.00 41.45 4.92
2005 2624 1.525306 GCCGCATTGGGGTACTACC 60.525 63.158 19.74 0.00 37.97 3.18
2408 5445 5.338559 CGCGGTTTACAACTTGTTGATTTAG 59.661 40.000 18.82 7.56 0.00 1.85
2416 5453 9.767228 TTACAACTTGTTGATTTAGTAGTAGCA 57.233 29.630 18.82 0.00 0.00 3.49
2418 5455 7.387948 ACAACTTGTTGATTTAGTAGTAGCAGG 59.612 37.037 18.82 0.00 0.00 4.85
2456 5600 8.836959 AATTTCTTTATTCGCTTATCGTTTCC 57.163 30.769 0.00 0.00 39.67 3.13
2457 5601 5.630896 TCTTTATTCGCTTATCGTTTCCG 57.369 39.130 0.00 0.00 39.67 4.30
2658 5804 0.730265 GCGTCAAACACAGACCAACA 59.270 50.000 0.00 0.00 32.41 3.33
2659 5805 1.333619 GCGTCAAACACAGACCAACAT 59.666 47.619 0.00 0.00 32.41 2.71
2662 5808 4.772434 CGTCAAACACAGACCAACATAAG 58.228 43.478 0.00 0.00 32.41 1.73
2669 5815 3.820467 CACAGACCAACATAAGGCTTTCA 59.180 43.478 4.45 0.00 0.00 2.69
2748 6216 5.475273 ACATCTTGCTCAATTATCACACG 57.525 39.130 0.00 0.00 0.00 4.49
2763 6265 2.093181 TCACACGGGATAGTTTCATGGG 60.093 50.000 0.00 0.00 0.00 4.00
2830 6335 9.887406 TCGGTTCATAAAGAATACAAAGAAAAC 57.113 29.630 0.00 0.00 38.76 2.43
2871 6376 3.870723 TTCAGAACGCATTACACACAC 57.129 42.857 0.00 0.00 0.00 3.82
2900 6405 3.562609 GGGGTAAGGCCACATTTCTAACA 60.563 47.826 5.01 0.00 41.46 2.41
2904 6409 6.120220 GGTAAGGCCACATTTCTAACAGTAT 58.880 40.000 5.01 0.00 37.17 2.12
2933 6438 8.673711 TCATATGCTGTAATCCAAACTTTGTAC 58.326 33.333 0.00 0.00 0.00 2.90
2935 6440 6.892658 TGCTGTAATCCAAACTTTGTACAT 57.107 33.333 0.00 0.00 0.00 2.29
2975 6565 5.767816 TGTCAGATTAGACTATAAGCGCA 57.232 39.130 11.47 0.00 39.27 6.09
2978 6568 6.153067 GTCAGATTAGACTATAAGCGCACAT 58.847 40.000 11.47 4.32 35.65 3.21
2981 6571 7.169813 TCAGATTAGACTATAAGCGCACATTTG 59.830 37.037 11.47 1.60 0.00 2.32
2983 6573 6.583912 TTAGACTATAAGCGCACATTTGTC 57.416 37.500 11.47 13.09 0.00 3.18
2998 6588 7.533426 GCACATTTGTCTTACAAGAATCTGAT 58.467 34.615 0.00 0.00 39.53 2.90
3005 6595 8.939201 TGTCTTACAAGAATCTGATTGATCTC 57.061 34.615 7.78 0.00 36.68 2.75
3017 6607 8.981724 ATCTGATTGATCTCAAACATTTTGTG 57.018 30.769 3.73 0.00 37.86 3.33
3031 6621 9.372541 CAAACATTTTGTGCAAAATTATCACTC 57.627 29.630 17.23 0.00 43.38 3.51
3036 6626 5.119931 TGTGCAAAATTATCACTCCACAC 57.880 39.130 0.00 0.00 0.00 3.82
3047 6637 4.271696 TCACTCCACACCTGAATTACAG 57.728 45.455 0.00 0.00 45.36 2.74
3083 6673 2.680339 TGCGAGTGAGAGATACAGAGTG 59.320 50.000 0.00 0.00 0.00 3.51
3088 6691 5.503357 CGAGTGAGAGATACAGAGTGCTAAC 60.503 48.000 0.00 0.00 0.00 2.34
3098 6701 3.055094 ACAGAGTGCTAACTAACATGGGG 60.055 47.826 0.00 0.00 36.52 4.96
3999 7658 1.227438 ACCGTCACCGTGGTTTCTG 60.227 57.895 0.00 0.00 33.81 3.02
4018 7677 5.223449 TCTGATTGTTTAAACCGGAGTCT 57.777 39.130 9.46 0.00 0.00 3.24
4025 7684 1.098050 TAAACCGGAGTCTCCTACGC 58.902 55.000 17.00 0.00 44.05 4.42
4026 7685 0.611340 AAACCGGAGTCTCCTACGCT 60.611 55.000 17.00 0.00 44.05 5.07
4029 7688 0.531200 CCGGAGTCTCCTACGCTTTT 59.469 55.000 17.00 0.00 44.05 2.27
4191 7874 2.845752 ATAGCGGCGCGAACAGGAAA 62.846 55.000 27.59 4.89 0.00 3.13
4192 7875 4.020378 GCGGCGCGAACAGGAAAA 62.020 61.111 19.09 0.00 0.00 2.29
4193 7876 2.173382 CGGCGCGAACAGGAAAAG 59.827 61.111 12.10 0.00 0.00 2.27
4236 7922 2.496070 AGTCGCTGGCTTCATTGTACTA 59.504 45.455 0.00 0.00 0.00 1.82
4237 7923 3.133003 AGTCGCTGGCTTCATTGTACTAT 59.867 43.478 0.00 0.00 0.00 2.12
4242 7928 5.050091 CGCTGGCTTCATTGTACTATTAAGG 60.050 44.000 11.50 0.00 0.00 2.69
4250 7936 7.931015 TCATTGTACTATTAAGGAGGGACAT 57.069 36.000 0.00 0.00 0.00 3.06
4251 7937 7.735917 TCATTGTACTATTAAGGAGGGACATG 58.264 38.462 0.00 0.00 0.00 3.21
4252 7938 5.546621 TGTACTATTAAGGAGGGACATGC 57.453 43.478 0.00 0.00 0.00 4.06
4257 7943 4.591321 ATTAAGGAGGGACATGCTGAAA 57.409 40.909 0.00 0.00 0.00 2.69
4284 7970 1.967762 TTTCGCTACGAATCGAACGT 58.032 45.000 20.75 20.75 45.28 3.99
4290 7976 3.603173 CGCTACGAATCGAACGTCAGATA 60.603 47.826 20.61 6.15 43.62 1.98
4335 8021 9.860898 AAAAGCCTAAGATGACAAATTATGTTC 57.139 29.630 0.00 0.00 44.12 3.18
4367 8053 5.363979 TGACAATGTATTTTAGCACGCAA 57.636 34.783 0.00 0.00 0.00 4.85
4386 8072 3.448686 CAAGACAAATCCTACTCGCGAT 58.551 45.455 10.36 2.40 0.00 4.58
4406 8092 9.644993 TCGCGATAACATAATTTGTCATAAAAG 57.355 29.630 3.71 0.00 37.68 2.27
4435 8121 6.935771 TCAATTTGCCATGCTTAAAAACTGAT 59.064 30.769 0.00 0.00 0.00 2.90
4454 8141 7.771927 ACTGATCTTGGATTTGAACATTTCT 57.228 32.000 0.00 0.00 0.00 2.52
4457 8144 8.048534 TGATCTTGGATTTGAACATTTCTCTC 57.951 34.615 0.00 0.00 0.00 3.20
4527 8214 2.050077 GCCGGAAACAGTGCAAGC 60.050 61.111 5.05 0.00 0.00 4.01
4530 8217 2.192861 CGGAAACAGTGCAAGCCCA 61.193 57.895 0.00 0.00 0.00 5.36
4544 8231 0.687354 AGCCCAGTCTTTCACGTCAT 59.313 50.000 0.00 0.00 0.00 3.06
4559 8278 1.270305 CGTCATATCCCTGAACGCCAT 60.270 52.381 0.00 0.00 0.00 4.40
4561 8280 3.589988 GTCATATCCCTGAACGCCATAG 58.410 50.000 0.00 0.00 0.00 2.23
4565 8284 0.673985 TCCCTGAACGCCATAGATCG 59.326 55.000 0.00 0.00 0.00 3.69
4576 8295 3.484393 CGCCATAGATCGTAGATCTCGTG 60.484 52.174 14.94 14.19 45.12 4.35
4582 8301 3.500299 AGATCGTAGATCTCGTGTGATGG 59.500 47.826 0.00 0.00 45.12 3.51
4583 8302 1.333931 TCGTAGATCTCGTGTGATGGC 59.666 52.381 0.00 0.00 0.00 4.40
4635 8355 2.092103 TCCCTAAAGGTGCAGTTGTTGT 60.092 45.455 0.00 0.00 36.75 3.32
4640 8360 1.102978 AGGTGCAGTTGTTGTGTTCC 58.897 50.000 0.00 0.00 0.00 3.62
4643 8363 0.455410 TGCAGTTGTTGTGTTCCTGC 59.545 50.000 0.00 0.00 46.64 4.85
4662 8382 6.860034 TCCTGCTATATCTCCCAAGTTACTA 58.140 40.000 0.00 0.00 0.00 1.82
4675 8395 8.118976 TCCCAAGTTACTAGTATAATCATCGG 57.881 38.462 2.79 0.00 0.00 4.18
4704 8424 6.643770 GGTCTATTTTCTATTATCGTCGGCAA 59.356 38.462 0.00 0.00 0.00 4.52
4745 8509 2.675032 CGTCTTCTGTTGCTGCCATAGA 60.675 50.000 0.00 0.00 0.00 1.98
4747 8511 2.012673 CTTCTGTTGCTGCCATAGACC 58.987 52.381 0.00 0.00 0.00 3.85
4776 8540 2.743928 GCGACAAGGCAGGTCCAG 60.744 66.667 0.00 0.00 37.29 3.86
4777 8541 2.743718 CGACAAGGCAGGTCCAGT 59.256 61.111 0.00 0.00 37.29 4.00
4797 8561 0.533032 GGAGGTGAAAGGAGGACTCG 59.467 60.000 0.00 0.00 0.00 4.18
4812 8576 2.759973 TCGAGGAGGCTCCGCATT 60.760 61.111 32.16 15.04 42.75 3.56
4817 8581 1.221840 GGAGGCTCCGCATTCAGAA 59.778 57.895 19.53 0.00 0.00 3.02
4821 8585 0.383231 GGCTCCGCATTCAGAAATGG 59.617 55.000 0.79 0.00 42.18 3.16
4827 8591 3.055963 TCCGCATTCAGAAATGGCAAAAT 60.056 39.130 0.00 0.00 42.18 1.82
4831 8595 6.455913 CCGCATTCAGAAATGGCAAAATTAAG 60.456 38.462 0.00 0.00 42.18 1.85
4839 8603 6.716173 AGAAATGGCAAAATTAAGCATTTGGT 59.284 30.769 0.00 0.00 35.09 3.67
4850 8614 4.701956 AAGCATTTGGTCATTTCCTACG 57.298 40.909 0.00 0.00 0.00 3.51
4853 8617 3.731867 GCATTTGGTCATTTCCTACGCTG 60.732 47.826 0.00 0.00 0.00 5.18
4858 8622 1.075542 TCATTTCCTACGCTGCAACG 58.924 50.000 8.18 8.18 39.50 4.10
4893 8657 1.150135 AGGAGTTCTTGGTGGAGGAGA 59.850 52.381 0.00 0.00 0.00 3.71
4912 8676 5.336150 GAGACAACTGAAGATCTCCATCA 57.664 43.478 0.00 0.00 32.97 3.07
4921 8685 4.080186 TGAAGATCTCCATCATTTCTGGCA 60.080 41.667 0.00 0.00 33.56 4.92
4954 8718 4.307443 CAGAAGATGGACGTGTATGCTA 57.693 45.455 0.00 0.00 0.00 3.49
4972 8736 2.483188 GCTACTACCGTTGATCCTTGGG 60.483 54.545 0.00 0.00 0.00 4.12
4982 8746 1.342175 TGATCCTTGGGATTGCATGCA 60.342 47.619 18.46 18.46 43.27 3.96
4988 8752 0.625316 TGGGATTGCATGCAGTAGGT 59.375 50.000 21.50 5.93 0.00 3.08
4995 8759 1.150567 GCATGCAGTAGGTCGAGCTG 61.151 60.000 26.70 12.42 0.00 4.24
5023 8788 0.734889 CTCGCCGGAGCATTCAAATT 59.265 50.000 5.05 0.00 39.83 1.82
5104 8869 3.056393 CCTGCAAAGCTTGATGAATTCCA 60.056 43.478 0.00 0.00 0.00 3.53
5148 8913 2.352805 CAGAGGCCCTGAACCCAC 59.647 66.667 14.21 0.00 45.78 4.61
5168 8933 0.534203 GTGTGGTTCCTCAAAGCCGA 60.534 55.000 0.00 0.00 34.35 5.54
5201 8966 4.882671 TGTTCTTTCTTCTTGTGTGCTC 57.117 40.909 0.00 0.00 0.00 4.26
5202 8967 4.260985 TGTTCTTTCTTCTTGTGTGCTCA 58.739 39.130 0.00 0.00 0.00 4.26
5213 8978 1.211703 TGTGTGCTCAAAGAGGTTGGA 59.788 47.619 0.00 0.00 37.85 3.53
5221 8986 4.745172 GCTCAAAGAGGTTGGAGAAGACTT 60.745 45.833 0.00 0.00 37.85 3.01
5235 9000 0.178921 AGACTTCACAGAGGGAGGCA 60.179 55.000 0.00 0.00 0.00 4.75
5263 9028 1.135141 GCCACGAGCATTGCCAAAATA 60.135 47.619 4.70 0.00 42.97 1.40
5287 9052 4.015406 TGCTGCCGTTCCCGATGT 62.015 61.111 0.00 0.00 35.63 3.06
5330 9095 2.158667 AGAGTGTCCGGTCAATGGTTTT 60.159 45.455 6.33 0.00 0.00 2.43
5332 9097 1.679153 GTGTCCGGTCAATGGTTTTGT 59.321 47.619 2.02 0.00 0.00 2.83
5337 9107 2.510613 CGGTCAATGGTTTTGTAGGGT 58.489 47.619 0.00 0.00 0.00 4.34
5341 9112 3.320826 GTCAATGGTTTTGTAGGGTGCTT 59.679 43.478 0.00 0.00 0.00 3.91
5394 9165 1.576421 GAGAGCCAAAGCCAACACG 59.424 57.895 0.00 0.00 41.25 4.49
5397 9168 1.452145 GAGCCAAAGCCAACACGGAA 61.452 55.000 0.00 0.00 41.25 4.30
5398 9169 0.827507 AGCCAAAGCCAACACGGAAT 60.828 50.000 0.00 0.00 41.25 3.01
5408 9179 3.496131 CACGGAATCAACGCCCGG 61.496 66.667 0.00 0.00 46.83 5.73
5414 9185 1.582610 GAATCAACGCCCGGCTGAAA 61.583 55.000 8.05 0.00 0.00 2.69
5415 9186 1.175983 AATCAACGCCCGGCTGAAAA 61.176 50.000 8.05 0.00 0.00 2.29
5423 9194 0.537371 CCCGGCTGAAAAGACCAAGT 60.537 55.000 0.00 0.00 0.00 3.16
5431 9202 4.438200 GCTGAAAAGACCAAGTTCGTGAAA 60.438 41.667 0.00 0.00 0.00 2.69
5444 9215 0.036388 CGTGAAAGCCAAGCCCTAGA 60.036 55.000 0.00 0.00 0.00 2.43
5455 9226 1.765230 AGCCCTAGAGTGTTAGACCG 58.235 55.000 0.00 0.00 0.00 4.79
5474 9245 0.475906 GGAGAGCATACTTGGGCCAT 59.524 55.000 7.26 0.00 0.00 4.40
5484 9256 1.341080 CTTGGGCCATTTCACCTTGT 58.659 50.000 7.26 0.00 0.00 3.16
5521 9293 1.544093 CCCATTCTCATGCGCCAGTAT 60.544 52.381 4.18 0.00 0.00 2.12
5558 9330 4.256920 CCTTGTCGATGTCCTTGAAGAAT 58.743 43.478 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.723309 GATTGGGTAATCTCCAAGATGCT 58.277 43.478 0.00 0.00 46.05 3.79
11 12 5.041191 ACAGTCCATGAGATTGGGTAATC 57.959 43.478 0.00 0.00 42.44 1.75
12 13 6.575244 TTACAGTCCATGAGATTGGGTAAT 57.425 37.500 0.00 0.00 36.55 1.89
13 14 6.157820 TGATTACAGTCCATGAGATTGGGTAA 59.842 38.462 0.00 0.00 36.55 2.85
14 15 5.665360 TGATTACAGTCCATGAGATTGGGTA 59.335 40.000 0.00 0.00 36.55 3.69
15 16 4.474651 TGATTACAGTCCATGAGATTGGGT 59.525 41.667 0.00 0.00 36.55 4.51
16 17 5.039920 TGATTACAGTCCATGAGATTGGG 57.960 43.478 0.00 0.00 36.55 4.12
17 18 4.514441 GCTGATTACAGTCCATGAGATTGG 59.486 45.833 0.00 0.00 45.04 3.16
18 19 5.121105 TGCTGATTACAGTCCATGAGATTG 58.879 41.667 0.00 0.00 45.04 2.67
19 20 5.363562 TGCTGATTACAGTCCATGAGATT 57.636 39.130 0.00 0.00 45.04 2.40
20 21 5.363562 TTGCTGATTACAGTCCATGAGAT 57.636 39.130 0.00 0.00 45.04 2.75
21 22 4.824479 TTGCTGATTACAGTCCATGAGA 57.176 40.909 0.00 0.00 45.04 3.27
22 23 5.699915 CCTATTGCTGATTACAGTCCATGAG 59.300 44.000 0.00 0.00 45.04 2.90
23 24 5.455183 CCCTATTGCTGATTACAGTCCATGA 60.455 44.000 0.00 0.00 45.04 3.07
24 25 4.758674 CCCTATTGCTGATTACAGTCCATG 59.241 45.833 0.00 0.00 45.04 3.66
25 26 4.413520 ACCCTATTGCTGATTACAGTCCAT 59.586 41.667 0.00 0.00 45.04 3.41
26 27 3.780294 ACCCTATTGCTGATTACAGTCCA 59.220 43.478 0.00 0.00 45.04 4.02
27 28 4.423625 ACCCTATTGCTGATTACAGTCC 57.576 45.455 0.00 0.00 45.04 3.85
28 29 6.992715 ACATAACCCTATTGCTGATTACAGTC 59.007 38.462 0.00 0.00 45.04 3.51
29 30 6.900194 ACATAACCCTATTGCTGATTACAGT 58.100 36.000 0.00 0.00 45.04 3.55
30 31 8.939929 CATACATAACCCTATTGCTGATTACAG 58.060 37.037 0.00 0.00 45.91 2.74
31 32 8.436778 ACATACATAACCCTATTGCTGATTACA 58.563 33.333 0.00 0.00 0.00 2.41
32 33 8.848474 ACATACATAACCCTATTGCTGATTAC 57.152 34.615 0.00 0.00 0.00 1.89
33 34 9.502091 GAACATACATAACCCTATTGCTGATTA 57.498 33.333 0.00 0.00 0.00 1.75
34 35 7.448469 GGAACATACATAACCCTATTGCTGATT 59.552 37.037 0.00 0.00 0.00 2.57
35 36 6.942576 GGAACATACATAACCCTATTGCTGAT 59.057 38.462 0.00 0.00 0.00 2.90
36 37 6.101150 AGGAACATACATAACCCTATTGCTGA 59.899 38.462 0.00 0.00 0.00 4.26
37 38 6.299141 AGGAACATACATAACCCTATTGCTG 58.701 40.000 0.00 0.00 0.00 4.41
38 39 6.515512 AGGAACATACATAACCCTATTGCT 57.484 37.500 0.00 0.00 0.00 3.91
39 40 6.770785 TGAAGGAACATACATAACCCTATTGC 59.229 38.462 0.00 0.00 0.00 3.56
40 41 8.746052 TTGAAGGAACATACATAACCCTATTG 57.254 34.615 0.00 0.00 0.00 1.90
41 42 9.408648 CTTTGAAGGAACATACATAACCCTATT 57.591 33.333 0.00 0.00 0.00 1.73
42 43 8.778059 TCTTTGAAGGAACATACATAACCCTAT 58.222 33.333 0.00 0.00 0.00 2.57
43 44 8.153221 TCTTTGAAGGAACATACATAACCCTA 57.847 34.615 0.00 0.00 0.00 3.53
44 45 7.027874 TCTTTGAAGGAACATACATAACCCT 57.972 36.000 0.00 0.00 0.00 4.34
45 46 7.696992 TTCTTTGAAGGAACATACATAACCC 57.303 36.000 0.00 0.00 0.00 4.11
51 52 9.295825 ACACATTATTCTTTGAAGGAACATACA 57.704 29.630 0.00 0.00 0.00 2.29
54 55 8.960591 CCTACACATTATTCTTTGAAGGAACAT 58.039 33.333 0.00 0.00 0.00 2.71
55 56 8.160765 TCCTACACATTATTCTTTGAAGGAACA 58.839 33.333 0.00 0.00 0.00 3.18
56 57 8.561738 TCCTACACATTATTCTTTGAAGGAAC 57.438 34.615 0.00 0.00 0.00 3.62
59 60 8.778358 GCTATCCTACACATTATTCTTTGAAGG 58.222 37.037 0.00 0.00 0.00 3.46
60 61 9.330063 TGCTATCCTACACATTATTCTTTGAAG 57.670 33.333 0.00 0.00 0.00 3.02
61 62 9.851686 ATGCTATCCTACACATTATTCTTTGAA 57.148 29.630 0.00 0.00 0.00 2.69
62 63 9.494271 GATGCTATCCTACACATTATTCTTTGA 57.506 33.333 0.00 0.00 0.00 2.69
63 64 9.499479 AGATGCTATCCTACACATTATTCTTTG 57.501 33.333 0.00 0.00 0.00 2.77
71 72 8.924303 TGTAAGTAAGATGCTATCCTACACATT 58.076 33.333 0.00 0.00 30.36 2.71
72 73 8.478775 TGTAAGTAAGATGCTATCCTACACAT 57.521 34.615 0.00 0.00 30.36 3.21
73 74 7.891498 TGTAAGTAAGATGCTATCCTACACA 57.109 36.000 0.00 0.00 30.36 3.72
76 77 9.575783 GCTTATGTAAGTAAGATGCTATCCTAC 57.424 37.037 2.11 0.00 34.34 3.18
77 78 9.535170 AGCTTATGTAAGTAAGATGCTATCCTA 57.465 33.333 2.11 0.00 34.34 2.94
78 79 8.429237 AGCTTATGTAAGTAAGATGCTATCCT 57.571 34.615 2.11 0.00 34.34 3.24
79 80 9.495572 AAAGCTTATGTAAGTAAGATGCTATCC 57.504 33.333 0.00 0.00 34.34 2.59
82 83 9.884636 TTCAAAGCTTATGTAAGTAAGATGCTA 57.115 29.630 0.00 0.00 34.34 3.49
83 84 8.792830 TTCAAAGCTTATGTAAGTAAGATGCT 57.207 30.769 0.00 0.00 34.34 3.79
84 85 9.278734 GTTTCAAAGCTTATGTAAGTAAGATGC 57.721 33.333 0.00 0.00 34.34 3.91
87 88 9.332502 TGTGTTTCAAAGCTTATGTAAGTAAGA 57.667 29.630 0.00 0.00 34.34 2.10
95 96 9.593134 TGTTTTAATGTGTTTCAAAGCTTATGT 57.407 25.926 0.00 0.00 0.00 2.29
99 100 9.824534 CTTTTGTTTTAATGTGTTTCAAAGCTT 57.175 25.926 0.00 0.00 0.00 3.74
100 101 8.998377 ACTTTTGTTTTAATGTGTTTCAAAGCT 58.002 25.926 0.00 0.00 0.00 3.74
101 102 9.605955 AACTTTTGTTTTAATGTGTTTCAAAGC 57.394 25.926 0.00 0.00 40.17 3.51
108 109 9.083080 GCAGACTAACTTTTGTTTTAATGTGTT 57.917 29.630 0.00 0.00 43.32 3.32
109 110 7.704899 GGCAGACTAACTTTTGTTTTAATGTGT 59.295 33.333 0.00 0.00 43.32 3.72
110 111 7.096640 CGGCAGACTAACTTTTGTTTTAATGTG 60.097 37.037 0.00 0.00 43.32 3.21
111 112 6.915843 CGGCAGACTAACTTTTGTTTTAATGT 59.084 34.615 0.00 0.00 43.32 2.71
112 113 6.915843 ACGGCAGACTAACTTTTGTTTTAATG 59.084 34.615 0.00 0.00 43.32 1.90
113 114 7.034685 ACGGCAGACTAACTTTTGTTTTAAT 57.965 32.000 0.00 0.00 43.32 1.40
114 115 6.439675 ACGGCAGACTAACTTTTGTTTTAA 57.560 33.333 0.00 0.00 43.32 1.52
115 116 6.538021 TGTACGGCAGACTAACTTTTGTTTTA 59.462 34.615 0.00 0.00 43.32 1.52
116 117 4.976224 ACGGCAGACTAACTTTTGTTTT 57.024 36.364 0.00 0.00 43.32 2.43
117 118 4.877251 TGTACGGCAGACTAACTTTTGTTT 59.123 37.500 0.00 0.00 43.32 2.83
118 119 4.444536 TGTACGGCAGACTAACTTTTGTT 58.555 39.130 0.00 0.00 45.76 2.83
119 120 4.062677 TGTACGGCAGACTAACTTTTGT 57.937 40.909 0.00 0.00 0.00 2.83
131 132 7.670009 AGTAGTAGTATAATCTGTACGGCAG 57.330 40.000 0.00 3.27 46.34 4.85
132 133 8.370940 ACTAGTAGTAGTATAATCTGTACGGCA 58.629 37.037 8.55 0.00 37.76 5.69
133 134 8.770438 ACTAGTAGTAGTATAATCTGTACGGC 57.230 38.462 8.55 0.00 37.76 5.68
151 152 8.362860 TGCTCGTTGTACTCTAATACTAGTAG 57.637 38.462 8.85 0.00 0.00 2.57
154 155 7.799447 GTGATGCTCGTTGTACTCTAATACTAG 59.201 40.741 0.00 0.00 0.00 2.57
157 158 5.686397 GGTGATGCTCGTTGTACTCTAATAC 59.314 44.000 0.00 0.00 0.00 1.89
160 161 3.762288 AGGTGATGCTCGTTGTACTCTAA 59.238 43.478 0.00 0.00 0.00 2.10
171 172 2.275318 GAGGAAAGAAGGTGATGCTCG 58.725 52.381 0.00 0.00 0.00 5.03
185 186 3.953712 TTGTGCTCTCATACGAGGAAA 57.046 42.857 0.00 0.00 39.95 3.13
194 195 3.773667 TCTGAAGGAGATTGTGCTCTCAT 59.226 43.478 3.42 0.00 42.90 2.90
205 206 5.028802 TCTCTCATTGGTTCTGAAGGAGAT 58.971 41.667 0.00 0.00 38.99 2.75
209 213 4.382901 CCTCTCTCTCATTGGTTCTGAAGG 60.383 50.000 0.00 0.00 0.00 3.46
213 217 5.356291 AATCCTCTCTCTCATTGGTTCTG 57.644 43.478 0.00 0.00 0.00 3.02
233 237 4.321230 GGAACAAACTCTTCGGCATCAAAT 60.321 41.667 0.00 0.00 0.00 2.32
254 280 5.599656 ACTGGTAGTATAATGCTTAACCGGA 59.400 40.000 9.46 0.00 35.81 5.14
255 281 5.850614 ACTGGTAGTATAATGCTTAACCGG 58.149 41.667 0.00 0.00 37.80 5.28
256 282 7.655490 ACTACTGGTAGTATAATGCTTAACCG 58.345 38.462 11.18 0.00 43.98 4.44
257 283 9.257651 CAACTACTGGTAGTATAATGCTTAACC 57.742 37.037 12.93 0.00 44.96 2.85
258 284 8.762426 GCAACTACTGGTAGTATAATGCTTAAC 58.238 37.037 19.51 1.40 44.96 2.01
259 285 8.479689 TGCAACTACTGGTAGTATAATGCTTAA 58.520 33.333 23.61 10.67 44.96 1.85
260 286 7.924412 GTGCAACTACTGGTAGTATAATGCTTA 59.076 37.037 23.61 11.14 44.96 3.09
261 287 6.761714 GTGCAACTACTGGTAGTATAATGCTT 59.238 38.462 23.61 4.96 44.96 3.91
262 288 6.281405 GTGCAACTACTGGTAGTATAATGCT 58.719 40.000 23.61 5.50 44.96 3.79
263 289 5.465724 GGTGCAACTACTGGTAGTATAATGC 59.534 44.000 19.77 19.77 44.96 3.56
264 290 6.479001 GTGGTGCAACTACTGGTAGTATAATG 59.521 42.308 12.93 9.15 45.79 1.90
265 291 6.579865 GTGGTGCAACTACTGGTAGTATAAT 58.420 40.000 12.93 0.00 45.79 1.28
266 292 5.969423 GTGGTGCAACTACTGGTAGTATAA 58.031 41.667 12.93 0.86 45.79 0.98
267 293 5.587388 GTGGTGCAACTACTGGTAGTATA 57.413 43.478 12.93 1.88 45.79 1.47
268 294 4.467198 GTGGTGCAACTACTGGTAGTAT 57.533 45.455 12.93 2.82 45.79 2.12
269 295 3.947910 GTGGTGCAACTACTGGTAGTA 57.052 47.619 12.93 0.00 45.79 1.82
270 296 2.833631 GTGGTGCAACTACTGGTAGT 57.166 50.000 2.04 7.51 45.79 2.73
282 308 2.942376 CTGAACTTTGTACTGTGGTGCA 59.058 45.455 0.00 0.00 36.33 4.57
314 342 6.255670 GCTGTTTTTCGGAACTCTGAATTTTT 59.744 34.615 1.87 0.00 40.57 1.94
317 345 4.554723 CGCTGTTTTTCGGAACTCTGAATT 60.555 41.667 1.87 0.00 40.57 2.17
318 346 3.058914 CGCTGTTTTTCGGAACTCTGAAT 60.059 43.478 1.87 0.00 40.57 2.57
319 347 2.286833 CGCTGTTTTTCGGAACTCTGAA 59.713 45.455 0.00 0.00 39.31 3.02
320 348 1.864711 CGCTGTTTTTCGGAACTCTGA 59.135 47.619 0.00 0.00 0.00 3.27
321 349 1.660333 GCGCTGTTTTTCGGAACTCTG 60.660 52.381 0.00 0.00 0.00 3.35
322 350 0.586802 GCGCTGTTTTTCGGAACTCT 59.413 50.000 0.00 0.00 0.00 3.24
323 351 0.586802 AGCGCTGTTTTTCGGAACTC 59.413 50.000 10.39 0.00 0.00 3.01
357 385 0.608035 CAAGCTTCCGTTTAGGGCCA 60.608 55.000 6.18 0.00 41.52 5.36
436 826 5.815740 AGTTGAAAGTTGTTGACGACTATGT 59.184 36.000 4.52 0.00 39.59 2.29
443 833 5.163794 ACTGGTAAGTTGAAAGTTGTTGACG 60.164 40.000 0.00 0.00 30.14 4.35
448 838 6.126854 ACTCCTACTGGTAAGTTGAAAGTTGT 60.127 38.462 0.00 0.00 37.88 3.32
481 1008 1.374885 CGTGCCGGTGATGTGGTAA 60.375 57.895 1.90 0.00 0.00 2.85
509 1036 3.674753 CGTTTTTGCTATTTCTTGCCTGG 59.325 43.478 0.00 0.00 0.00 4.45
529 1056 2.420022 GGCAAGTTGATAGCAATGACGT 59.580 45.455 7.16 0.00 36.22 4.34
530 1057 2.419673 TGGCAAGTTGATAGCAATGACG 59.580 45.455 7.16 0.00 36.22 4.35
531 1058 3.441572 ACTGGCAAGTTGATAGCAATGAC 59.558 43.478 7.16 0.00 36.22 3.06
532 1059 3.689347 ACTGGCAAGTTGATAGCAATGA 58.311 40.909 7.16 0.00 36.22 2.57
533 1060 4.036027 CCTACTGGCAAGTTGATAGCAATG 59.964 45.833 7.16 0.00 37.88 2.82
534 1061 4.080356 TCCTACTGGCAAGTTGATAGCAAT 60.080 41.667 7.16 0.00 37.88 3.56
535 1062 3.263170 TCCTACTGGCAAGTTGATAGCAA 59.737 43.478 7.16 0.00 37.88 3.91
536 1063 2.837591 TCCTACTGGCAAGTTGATAGCA 59.162 45.455 7.16 0.00 37.88 3.49
537 1064 3.118592 ACTCCTACTGGCAAGTTGATAGC 60.119 47.826 7.16 0.00 37.88 2.97
538 1065 4.744795 ACTCCTACTGGCAAGTTGATAG 57.255 45.455 7.16 6.17 37.88 2.08
539 1066 5.020795 TGTACTCCTACTGGCAAGTTGATA 58.979 41.667 7.16 0.00 37.88 2.15
540 1067 3.838317 TGTACTCCTACTGGCAAGTTGAT 59.162 43.478 7.16 0.00 37.88 2.57
541 1068 3.236047 TGTACTCCTACTGGCAAGTTGA 58.764 45.455 7.16 0.00 37.88 3.18
542 1069 3.678056 TGTACTCCTACTGGCAAGTTG 57.322 47.619 0.00 0.00 37.88 3.16
543 1070 4.910458 AATGTACTCCTACTGGCAAGTT 57.090 40.909 0.00 0.00 37.88 2.66
544 1071 4.910458 AAATGTACTCCTACTGGCAAGT 57.090 40.909 0.00 0.00 40.67 3.16
545 1072 5.978814 AGTAAATGTACTCCTACTGGCAAG 58.021 41.667 0.00 0.00 35.55 4.01
546 1073 6.127253 GGTAGTAAATGTACTCCTACTGGCAA 60.127 42.308 0.00 0.00 41.06 4.52
547 1074 5.361857 GGTAGTAAATGTACTCCTACTGGCA 59.638 44.000 0.00 0.00 41.06 4.92
548 1075 5.361857 TGGTAGTAAATGTACTCCTACTGGC 59.638 44.000 0.00 5.07 41.06 4.85
549 1076 6.379133 TGTGGTAGTAAATGTACTCCTACTGG 59.621 42.308 0.00 0.00 41.06 4.00
550 1077 7.400599 TGTGGTAGTAAATGTACTCCTACTG 57.599 40.000 0.00 0.00 41.06 2.74
551 1078 7.837689 TGATGTGGTAGTAAATGTACTCCTACT 59.162 37.037 0.00 0.93 41.06 2.57
552 1079 7.919621 GTGATGTGGTAGTAAATGTACTCCTAC 59.080 40.741 0.00 0.00 41.06 3.18
553 1080 7.069085 GGTGATGTGGTAGTAAATGTACTCCTA 59.931 40.741 0.00 0.00 41.06 2.94
554 1081 6.127140 GGTGATGTGGTAGTAAATGTACTCCT 60.127 42.308 0.00 0.00 41.06 3.69
555 1082 6.047231 GGTGATGTGGTAGTAAATGTACTCC 58.953 44.000 0.00 2.09 41.06 3.85
556 1083 5.747197 CGGTGATGTGGTAGTAAATGTACTC 59.253 44.000 0.00 0.00 41.06 2.59
557 1084 5.394883 CCGGTGATGTGGTAGTAAATGTACT 60.395 44.000 0.19 0.19 43.27 2.73
558 1085 4.807304 CCGGTGATGTGGTAGTAAATGTAC 59.193 45.833 0.00 0.00 0.00 2.90
559 1086 4.681244 GCCGGTGATGTGGTAGTAAATGTA 60.681 45.833 1.90 0.00 0.00 2.29
560 1087 3.869065 CCGGTGATGTGGTAGTAAATGT 58.131 45.455 0.00 0.00 0.00 2.71
561 1088 2.612212 GCCGGTGATGTGGTAGTAAATG 59.388 50.000 1.90 0.00 0.00 2.32
562 1089 2.237643 TGCCGGTGATGTGGTAGTAAAT 59.762 45.455 1.90 0.00 0.00 1.40
563 1090 1.624312 TGCCGGTGATGTGGTAGTAAA 59.376 47.619 1.90 0.00 0.00 2.01
564 1091 1.268066 TGCCGGTGATGTGGTAGTAA 58.732 50.000 1.90 0.00 0.00 2.24
565 1092 1.268066 TTGCCGGTGATGTGGTAGTA 58.732 50.000 1.90 0.00 0.00 1.82
566 1093 0.398696 TTTGCCGGTGATGTGGTAGT 59.601 50.000 1.90 0.00 0.00 2.73
567 1094 0.802494 GTTTGCCGGTGATGTGGTAG 59.198 55.000 1.90 0.00 0.00 3.18
568 1095 0.398696 AGTTTGCCGGTGATGTGGTA 59.601 50.000 1.90 0.00 0.00 3.25
569 1096 0.467290 AAGTTTGCCGGTGATGTGGT 60.467 50.000 1.90 0.00 0.00 4.16
570 1097 0.039256 CAAGTTTGCCGGTGATGTGG 60.039 55.000 1.90 0.00 0.00 4.17
571 1098 3.477504 CAAGTTTGCCGGTGATGTG 57.522 52.632 1.90 0.00 0.00 3.21
582 1109 1.919918 TGCCTGTTTTCGCAAGTTTG 58.080 45.000 0.00 0.00 39.48 2.93
583 1110 2.663826 TTGCCTGTTTTCGCAAGTTT 57.336 40.000 0.00 0.00 39.96 2.66
587 1114 2.949451 TTTCTTGCCTGTTTTCGCAA 57.051 40.000 0.00 0.00 42.48 4.85
588 1115 3.611530 GCTATTTCTTGCCTGTTTTCGCA 60.612 43.478 0.00 0.00 0.00 5.10
589 1116 2.917343 GCTATTTCTTGCCTGTTTTCGC 59.083 45.455 0.00 0.00 0.00 4.70
590 1117 4.159377 TGCTATTTCTTGCCTGTTTTCG 57.841 40.909 0.00 0.00 0.00 3.46
591 1118 6.843069 TTTTGCTATTTCTTGCCTGTTTTC 57.157 33.333 0.00 0.00 0.00 2.29
592 1119 6.597280 TGTTTTTGCTATTTCTTGCCTGTTTT 59.403 30.769 0.00 0.00 0.00 2.43
593 1120 6.037062 GTGTTTTTGCTATTTCTTGCCTGTTT 59.963 34.615 0.00 0.00 0.00 2.83
594 1121 5.523552 GTGTTTTTGCTATTTCTTGCCTGTT 59.476 36.000 0.00 0.00 0.00 3.16
595 1122 5.049828 GTGTTTTTGCTATTTCTTGCCTGT 58.950 37.500 0.00 0.00 0.00 4.00
596 1123 4.448732 GGTGTTTTTGCTATTTCTTGCCTG 59.551 41.667 0.00 0.00 0.00 4.85
597 1124 4.100808 TGGTGTTTTTGCTATTTCTTGCCT 59.899 37.500 0.00 0.00 0.00 4.75
598 1125 4.376146 TGGTGTTTTTGCTATTTCTTGCC 58.624 39.130 0.00 0.00 0.00 4.52
599 1126 6.365050 CAATGGTGTTTTTGCTATTTCTTGC 58.635 36.000 0.00 0.00 0.00 4.01
600 1127 6.365050 GCAATGGTGTTTTTGCTATTTCTTG 58.635 36.000 0.64 0.00 43.75 3.02
601 1128 6.544038 GCAATGGTGTTTTTGCTATTTCTT 57.456 33.333 0.64 0.00 43.75 2.52
609 1136 4.559153 AGTGATAGCAATGGTGTTTTTGC 58.441 39.130 0.00 0.00 46.68 3.68
610 1137 5.163513 GGAGTGATAGCAATGGTGTTTTTG 58.836 41.667 0.00 0.00 0.00 2.44
611 1138 4.082787 CGGAGTGATAGCAATGGTGTTTTT 60.083 41.667 0.00 0.00 0.00 1.94
612 1139 3.440173 CGGAGTGATAGCAATGGTGTTTT 59.560 43.478 0.00 0.00 0.00 2.43
613 1140 3.009723 CGGAGTGATAGCAATGGTGTTT 58.990 45.455 0.00 0.00 0.00 2.83
614 1141 2.632377 CGGAGTGATAGCAATGGTGTT 58.368 47.619 0.00 0.00 0.00 3.32
618 1145 0.886490 GGGCGGAGTGATAGCAATGG 60.886 60.000 0.00 0.00 0.00 3.16
635 1162 0.965439 GGAGTGGAGATCTCATCGGG 59.035 60.000 23.85 0.00 34.04 5.14
656 1183 8.722394 CCCTAATCTTTCTGAGAAGTTTGTAAC 58.278 37.037 0.00 0.00 38.06 2.50
680 1213 2.361230 CCCTGGGTCGCTTTTCCC 60.361 66.667 3.97 0.00 43.67 3.97
729 1262 2.511145 CAGAGAGGAAGGCGCTGC 60.511 66.667 7.64 0.00 0.00 5.25
870 1419 2.852075 TTTCCCTGCCCCACGAGT 60.852 61.111 0.00 0.00 0.00 4.18
932 1481 3.353836 CCCGTGCGTTCAACTGGG 61.354 66.667 0.00 0.00 0.00 4.45
973 1527 1.443802 GAACCAAGAAAGAGGCCGAG 58.556 55.000 0.00 0.00 0.00 4.63
974 1528 0.320421 CGAACCAAGAAAGAGGCCGA 60.320 55.000 0.00 0.00 0.00 5.54
1129 1688 1.403514 GGAGAAGCTGAACTCGGTGAG 60.404 57.143 0.00 0.00 34.40 3.51
1151 1710 1.740285 CGGTACTCGGGATGGAAGG 59.260 63.158 0.00 0.00 34.75 3.46
1881 2458 1.275666 TCTCCACCGTCATGTTCCAT 58.724 50.000 0.00 0.00 0.00 3.41
1918 2495 0.329596 AGAATGAGGCCCCTGTTGTC 59.670 55.000 0.00 0.00 0.00 3.18
2455 5599 0.163788 GTGCAAGAATCACGTGTCGG 59.836 55.000 16.51 6.05 0.00 4.79
2456 5600 0.858583 TGTGCAAGAATCACGTGTCG 59.141 50.000 16.51 0.17 37.26 4.35
2457 5601 2.413239 CCATGTGCAAGAATCACGTGTC 60.413 50.000 16.51 6.76 45.28 3.67
2458 5602 1.536766 CCATGTGCAAGAATCACGTGT 59.463 47.619 16.51 0.00 45.28 4.49
2658 5804 6.820656 CAGAATACAGACTGTGAAAGCCTTAT 59.179 38.462 18.58 0.00 0.00 1.73
2659 5805 6.166279 CAGAATACAGACTGTGAAAGCCTTA 58.834 40.000 18.58 0.00 0.00 2.69
2662 5808 3.126000 GCAGAATACAGACTGTGAAAGCC 59.874 47.826 18.58 1.90 36.62 4.35
2669 5815 9.502091 TTGTTAATTAAGCAGAATACAGACTGT 57.498 29.630 13.68 13.68 36.62 3.55
2748 6216 3.458487 AGGTGTACCCATGAAACTATCCC 59.542 47.826 0.00 0.00 36.42 3.85
2763 6265 4.438744 GGCATTGCTTGTAATGAGGTGTAC 60.439 45.833 14.00 0.00 39.79 2.90
2900 6405 8.840321 GTTTGGATTACAGCATATGAACATACT 58.160 33.333 6.97 0.00 0.00 2.12
2904 6409 7.701539 AAGTTTGGATTACAGCATATGAACA 57.298 32.000 6.97 0.00 0.00 3.18
2956 6546 7.042456 ACAAATGTGCGCTTATAGTCTAATCTG 60.042 37.037 9.73 0.00 0.00 2.90
2975 6565 9.288576 TCAATCAGATTCTTGTAAGACAAATGT 57.711 29.630 0.00 0.00 37.69 2.71
2978 6568 9.730705 AGATCAATCAGATTCTTGTAAGACAAA 57.269 29.630 0.00 0.00 35.80 2.83
2981 6571 8.939201 TGAGATCAATCAGATTCTTGTAAGAC 57.061 34.615 0.00 0.00 37.00 3.01
2983 6573 9.985318 GTTTGAGATCAATCAGATTCTTGTAAG 57.015 33.333 0.00 0.00 37.00 2.34
2998 6588 7.606858 TTTTGCACAAAATGTTTGAGATCAA 57.393 28.000 7.68 0.00 35.57 2.57
3005 6595 9.372541 GAGTGATAATTTTGCACAAAATGTTTG 57.627 29.630 19.13 0.00 46.76 2.93
3017 6607 4.458989 TCAGGTGTGGAGTGATAATTTTGC 59.541 41.667 0.00 0.00 0.00 3.68
3060 6650 3.951037 ACTCTGTATCTCTCACTCGCAAT 59.049 43.478 0.00 0.00 0.00 3.56
3062 6652 2.680339 CACTCTGTATCTCTCACTCGCA 59.320 50.000 0.00 0.00 0.00 5.10
3076 6666 3.055094 CCCCATGTTAGTTAGCACTCTGT 60.055 47.826 0.00 0.00 34.06 3.41
3077 6667 3.535561 CCCCATGTTAGTTAGCACTCTG 58.464 50.000 0.00 0.00 34.06 3.35
3098 6701 4.489771 CCCTGCACCGTCCATCCC 62.490 72.222 0.00 0.00 0.00 3.85
3994 7653 6.059484 AGACTCCGGTTTAAACAATCAGAAA 58.941 36.000 19.57 0.00 0.00 2.52
3999 7658 4.576879 AGGAGACTCCGGTTTAAACAATC 58.423 43.478 19.57 8.98 42.75 2.67
4066 7725 8.656849 GCAAGAACAATTCTCGTTAGAAAGATA 58.343 33.333 0.00 0.00 44.75 1.98
4067 7726 7.173218 TGCAAGAACAATTCTCGTTAGAAAGAT 59.827 33.333 0.00 0.00 44.75 2.40
4068 7727 6.481976 TGCAAGAACAATTCTCGTTAGAAAGA 59.518 34.615 0.00 0.00 44.75 2.52
4155 7838 5.737635 GCCGCTATCTAGAACAGAACTCATT 60.738 44.000 0.00 0.00 36.67 2.57
4156 7839 4.261825 GCCGCTATCTAGAACAGAACTCAT 60.262 45.833 0.00 0.00 36.67 2.90
4236 7922 4.591321 TTTCAGCATGTCCCTCCTTAAT 57.409 40.909 0.00 0.00 37.40 1.40
4237 7923 4.380843 TTTTCAGCATGTCCCTCCTTAA 57.619 40.909 0.00 0.00 37.40 1.85
4242 7928 4.074970 TCTTCTTTTTCAGCATGTCCCTC 58.925 43.478 0.00 0.00 37.40 4.30
4250 7936 4.836125 AGCGAAATCTTCTTTTTCAGCA 57.164 36.364 12.08 0.00 36.25 4.41
4251 7937 4.783540 CGTAGCGAAATCTTCTTTTTCAGC 59.216 41.667 0.00 0.00 35.17 4.26
4252 7938 6.153212 TCGTAGCGAAATCTTCTTTTTCAG 57.847 37.500 0.00 0.00 33.61 3.02
4284 7970 6.154192 TGGTTTGCCATGCTAAAAATATCTGA 59.846 34.615 0.00 0.00 40.46 3.27
4290 7976 5.278414 GCTTTTGGTTTGCCATGCTAAAAAT 60.278 36.000 0.00 0.00 45.56 1.82
4312 7998 8.049117 TGAGAACATAATTTGTCATCTTAGGCT 58.951 33.333 0.00 0.00 37.68 4.58
4335 8021 8.288208 GCTAAAATACATTGTCATCCTCATGAG 58.712 37.037 16.24 16.24 39.86 2.90
4367 8053 4.097437 TGTTATCGCGAGTAGGATTTGTCT 59.903 41.667 16.66 0.00 0.00 3.41
4406 8092 1.431496 AAGCATGGCAAATTGAACGC 58.569 45.000 0.00 0.00 0.00 4.84
4435 8121 7.822161 TTGAGAGAAATGTTCAAATCCAAGA 57.178 32.000 0.00 0.00 0.00 3.02
4477 8164 5.772825 TTGTCTGGACTTTTTCCTTGATG 57.227 39.130 2.38 0.00 46.10 3.07
4497 8184 1.044611 TTCCGGCCTTTTTCCCTTTG 58.955 50.000 0.00 0.00 0.00 2.77
4527 8214 3.458189 GGATATGACGTGAAAGACTGGG 58.542 50.000 0.00 0.00 0.00 4.45
4530 8217 4.023980 TCAGGGATATGACGTGAAAGACT 58.976 43.478 0.00 0.00 30.69 3.24
4544 8231 2.492088 CGATCTATGGCGTTCAGGGATA 59.508 50.000 0.00 0.00 0.00 2.59
4559 8278 4.691216 CCATCACACGAGATCTACGATCTA 59.309 45.833 17.60 4.99 34.70 1.98
4561 8280 3.816091 CCATCACACGAGATCTACGATC 58.184 50.000 17.60 0.00 34.70 3.69
4565 8284 1.600663 CGGCCATCACACGAGATCTAC 60.601 57.143 2.24 0.00 0.00 2.59
4582 8301 0.029834 GTCAATGATGTGATGGCGGC 59.970 55.000 0.00 0.00 0.00 6.53
4583 8302 0.664761 GGTCAATGATGTGATGGCGG 59.335 55.000 0.00 0.00 0.00 6.13
4593 8312 2.159382 GGAAACACCGTGGTCAATGAT 58.841 47.619 3.03 0.00 0.00 2.45
4635 8355 4.298626 ACTTGGGAGATATAGCAGGAACA 58.701 43.478 0.00 0.00 0.00 3.18
4640 8360 7.768807 ACTAGTAACTTGGGAGATATAGCAG 57.231 40.000 0.00 0.00 0.00 4.24
4662 8382 9.847224 AAAATAGACCAAACCGATGATTATACT 57.153 29.630 0.00 0.00 0.00 2.12
4673 8393 8.361592 ACGATAATAGAAAATAGACCAAACCG 57.638 34.615 0.00 0.00 0.00 4.44
4675 8395 8.485591 CCGACGATAATAGAAAATAGACCAAAC 58.514 37.037 0.00 0.00 0.00 2.93
4704 8424 1.402259 GACGACCATCATCGACTCTGT 59.598 52.381 1.63 0.00 45.13 3.41
4725 8445 2.675348 GTCTATGGCAGCAACAGAAGAC 59.325 50.000 0.00 0.00 31.77 3.01
4729 8449 0.983467 TGGTCTATGGCAGCAACAGA 59.017 50.000 0.00 0.00 0.00 3.41
4730 8450 1.065926 TCTGGTCTATGGCAGCAACAG 60.066 52.381 0.00 0.00 0.00 3.16
4747 8511 3.626996 TTGTCGCCCTGGCCATCTG 62.627 63.158 5.51 0.00 37.98 2.90
4769 8533 1.059913 CTTTCACCTCCACTGGACCT 58.940 55.000 0.00 0.00 0.00 3.85
4776 8540 1.276705 GAGTCCTCCTTTCACCTCCAC 59.723 57.143 0.00 0.00 0.00 4.02
4777 8541 1.645710 GAGTCCTCCTTTCACCTCCA 58.354 55.000 0.00 0.00 0.00 3.86
4812 8576 7.094720 CCAAATGCTTAATTTTGCCATTTCTGA 60.095 33.333 0.00 0.00 36.28 3.27
4817 8581 6.002704 TGACCAAATGCTTAATTTTGCCATT 58.997 32.000 0.00 0.00 36.28 3.16
4821 8585 7.022979 GGAAATGACCAAATGCTTAATTTTGC 58.977 34.615 0.00 0.00 36.28 3.68
4827 8591 5.392595 GCGTAGGAAATGACCAAATGCTTAA 60.393 40.000 0.00 0.00 31.73 1.85
4831 8595 2.423538 AGCGTAGGAAATGACCAAATGC 59.576 45.455 0.00 0.00 33.36 3.56
4839 8603 1.075542 CGTTGCAGCGTAGGAAATGA 58.924 50.000 15.40 0.00 0.00 2.57
4850 8614 1.064060 GGTACAATGATCCGTTGCAGC 59.936 52.381 7.60 0.00 34.08 5.25
4853 8617 2.609459 CTCTGGTACAATGATCCGTTGC 59.391 50.000 7.60 0.00 38.70 4.17
4858 8622 4.407296 AGAACTCCTCTGGTACAATGATCC 59.593 45.833 0.00 0.00 38.70 3.36
4893 8657 6.598457 CAGAAATGATGGAGATCTTCAGTTGT 59.402 38.462 10.13 5.01 37.75 3.32
4921 8685 4.351054 CTTCTGGGCGGCTTGGGT 62.351 66.667 9.56 0.00 0.00 4.51
4954 8718 1.946984 TCCCAAGGATCAACGGTAGT 58.053 50.000 0.00 0.00 0.00 2.73
4972 8736 1.863454 CTCGACCTACTGCATGCAATC 59.137 52.381 22.88 12.67 0.00 2.67
4982 8746 0.745128 CTCGTCCAGCTCGACCTACT 60.745 60.000 5.85 0.00 33.71 2.57
4988 8752 2.764944 GAGTACTCGTCCAGCTCGA 58.235 57.895 7.22 0.00 35.96 4.04
5009 8773 2.095263 ACGTGGAAATTTGAATGCTCCG 60.095 45.455 0.00 0.00 0.00 4.63
5073 8838 2.559668 CAAGCTTTGCAGGAAGATCCAA 59.440 45.455 0.00 0.00 39.61 3.53
5136 8901 2.978010 CACACGTGGGTTCAGGGC 60.978 66.667 21.57 0.00 33.45 5.19
5148 8913 1.841663 CGGCTTTGAGGAACCACACG 61.842 60.000 0.00 0.00 0.00 4.49
5168 8933 6.529220 AGAAGAAAGAACAAGACAGTAGCAT 58.471 36.000 0.00 0.00 0.00 3.79
5175 8940 5.391950 GCACACAAGAAGAAAGAACAAGACA 60.392 40.000 0.00 0.00 0.00 3.41
5179 8944 4.699735 TGAGCACACAAGAAGAAAGAACAA 59.300 37.500 0.00 0.00 0.00 2.83
5201 8966 4.513318 GTGAAGTCTTCTCCAACCTCTTTG 59.487 45.833 13.67 0.00 34.63 2.77
5202 8967 4.164221 TGTGAAGTCTTCTCCAACCTCTTT 59.836 41.667 13.67 0.00 0.00 2.52
5213 8978 2.534990 CCTCCCTCTGTGAAGTCTTCT 58.465 52.381 13.67 0.00 0.00 2.85
5221 8986 2.997315 CGGTGCCTCCCTCTGTGA 60.997 66.667 0.00 0.00 0.00 3.58
5263 9028 2.268076 GGAACGGCAGCACAACCAT 61.268 57.895 0.00 0.00 0.00 3.55
5287 9052 0.538118 GTGTCCGCCACCAAGGTATA 59.462 55.000 0.00 0.00 40.61 1.47
5315 9080 2.553466 CCCTACAAAACCATTGACCGGA 60.553 50.000 9.46 0.00 0.00 5.14
5373 9144 0.538057 TGTTGGCTTTGGCTCTCCTG 60.538 55.000 0.00 0.00 38.73 3.86
5394 9165 3.508840 CAGCCGGGCGTTGATTCC 61.509 66.667 14.39 0.00 0.00 3.01
5397 9168 1.586154 CTTTTCAGCCGGGCGTTGAT 61.586 55.000 14.39 0.00 0.00 2.57
5398 9169 2.203224 TTTTCAGCCGGGCGTTGA 60.203 55.556 14.39 10.25 0.00 3.18
5408 9179 2.612212 TCACGAACTTGGTCTTTTCAGC 59.388 45.455 0.00 0.00 0.00 4.26
5414 9185 1.947456 GGCTTTCACGAACTTGGTCTT 59.053 47.619 0.00 0.00 0.00 3.01
5415 9186 1.134220 TGGCTTTCACGAACTTGGTCT 60.134 47.619 0.00 0.00 0.00 3.85
5423 9194 0.398696 TAGGGCTTGGCTTTCACGAA 59.601 50.000 0.00 0.00 0.00 3.85
5431 9202 1.834263 CTAACACTCTAGGGCTTGGCT 59.166 52.381 0.00 0.00 0.00 4.75
5444 9215 1.853963 ATGCTCTCCGGTCTAACACT 58.146 50.000 0.00 0.00 0.00 3.55
5455 9226 0.475906 ATGGCCCAAGTATGCTCTCC 59.524 55.000 0.00 0.00 0.00 3.71
5500 9272 1.153107 CTGGCGCATGAGAATGGGA 60.153 57.895 10.83 0.00 36.71 4.37
5502 9274 1.534163 CATACTGGCGCATGAGAATGG 59.466 52.381 10.83 0.00 0.00 3.16
5521 9293 3.064682 CGACAAGGTGTGATGTTGTTTCA 59.935 43.478 0.00 0.00 34.55 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.