Multiple sequence alignment - TraesCS7D01G247800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G247800 chr7D 100.000 5596 0 0 1 5596 217996199 218001794 0.000000e+00 10334.0
1 TraesCS7D01G247800 chr7B 95.646 4548 136 29 144 4670 181687097 181682591 0.000000e+00 7245.0
2 TraesCS7D01G247800 chr7B 90.823 948 44 19 4678 5596 181682534 181681601 0.000000e+00 1229.0
3 TraesCS7D01G247800 chr7B 100.000 29 0 0 3200 3228 48962703 48962731 3.000000e-03 54.7
4 TraesCS7D01G247800 chr7A 92.412 2570 94 30 597 3159 230862288 230864763 0.000000e+00 3572.0
5 TraesCS7D01G247800 chr7A 90.025 1624 96 33 4001 5582 230865605 230867204 0.000000e+00 2041.0
6 TraesCS7D01G247800 chr7A 93.415 820 33 9 3222 4027 230864762 230865574 0.000000e+00 1195.0
7 TraesCS7D01G247800 chr7A 86.517 445 26 21 164 606 230861581 230861993 5.110000e-125 459.0
8 TraesCS7D01G247800 chr7A 92.994 157 9 2 10 165 230861392 230861547 1.570000e-55 228.0
9 TraesCS7D01G247800 chr5D 83.943 847 115 13 1071 1896 379572573 379573419 0.000000e+00 791.0
10 TraesCS7D01G247800 chr5D 86.441 177 24 0 2190 2366 379573612 379573788 1.590000e-45 195.0
11 TraesCS7D01G247800 chr5A 83.412 844 122 12 1071 1896 480172784 480173627 0.000000e+00 767.0
12 TraesCS7D01G247800 chr5A 85.876 177 25 0 2190 2366 480173815 480173991 7.400000e-44 189.0
13 TraesCS7D01G247800 chr5B 82.996 841 128 10 1071 1896 455506063 455506903 0.000000e+00 747.0
14 TraesCS7D01G247800 chr5B 85.876 177 25 0 2190 2366 455507101 455507277 7.400000e-44 189.0
15 TraesCS7D01G247800 chr4B 77.507 369 71 11 79 438 664761437 664761802 1.580000e-50 211.0
16 TraesCS7D01G247800 chr3A 76.214 412 86 10 73 475 716129722 716130130 2.040000e-49 207.0
17 TraesCS7D01G247800 chrUn 75.974 308 66 8 163 466 127033496 127033799 9.710000e-33 152.0
18 TraesCS7D01G247800 chr6D 80.198 202 34 5 126 326 427166128 427166324 4.520000e-31 147.0
19 TraesCS7D01G247800 chr6D 80.208 192 36 2 163 353 427167495 427167685 5.840000e-30 143.0
20 TraesCS7D01G247800 chr4A 81.366 161 27 3 168 326 481422196 481422037 1.640000e-25 128.0
21 TraesCS7D01G247800 chr3D 91.176 68 6 0 259 326 357712405 357712472 5.970000e-15 93.5
22 TraesCS7D01G247800 chr6B 92.308 39 2 1 3188 3226 717877013 717877050 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G247800 chr7D 217996199 218001794 5595 False 10334 10334 100.0000 1 5596 1 chr7D.!!$F1 5595
1 TraesCS7D01G247800 chr7B 181681601 181687097 5496 True 4237 7245 93.2345 144 5596 2 chr7B.!!$R1 5452
2 TraesCS7D01G247800 chr7A 230861392 230867204 5812 False 1499 3572 91.0726 10 5582 5 chr7A.!!$F1 5572
3 TraesCS7D01G247800 chr5D 379572573 379573788 1215 False 493 791 85.1920 1071 2366 2 chr5D.!!$F1 1295
4 TraesCS7D01G247800 chr5A 480172784 480173991 1207 False 478 767 84.6440 1071 2366 2 chr5A.!!$F1 1295
5 TraesCS7D01G247800 chr5B 455506063 455507277 1214 False 468 747 84.4360 1071 2366 2 chr5B.!!$F1 1295

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
350 387 0.600255 AGTTTGAAGTGGACCTCGCG 60.600 55.0 0.00 0.00 0.00 5.87 F
2087 2474 0.329261 TCTGGAATTCTGGTGCAGGG 59.671 55.0 5.23 0.00 35.34 4.45 F
3130 3554 0.965866 GGGGAAAACAGCCTAGGCAC 60.966 60.0 34.70 17.15 44.88 5.01 F
4208 4705 0.394938 TTTGTGTTGCTAGGGCGAGA 59.605 50.0 0.00 0.00 42.25 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2129 2516 0.387112 TACCGCGTTGTGTTCTACCG 60.387 55.000 4.92 0.0 0.00 4.02 R
3871 4300 3.054361 GGGGATGGGCACTTATTCGATAT 60.054 47.826 0.00 0.0 0.00 1.63 R
4331 4838 1.079612 GCCCACCTGCATTTTCAGC 60.080 57.895 0.00 0.0 32.87 4.26 R
5508 6095 0.032515 TAATGAGGAGCCCGTCTGGA 60.033 55.000 0.00 0.0 37.49 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 3.489391 GGGACCCAATAAACTCGGG 57.511 57.895 5.33 0.00 46.22 5.14
49 50 1.933853 CCAATAAACTCGGGCGAAGAG 59.066 52.381 0.00 0.00 41.27 2.85
71 72 7.064229 AGAGAGTACCTAAATAGAAGGGTCTG 58.936 42.308 0.00 0.00 38.54 3.51
77 78 5.070580 ACCTAAATAGAAGGGTCTGAATCGG 59.929 44.000 0.00 0.00 38.54 4.18
82 83 8.666129 AAATAGAAGGGTCTGAATCGGATATA 57.334 34.615 0.00 0.00 35.12 0.86
90 91 6.591834 GGGTCTGAATCGGATATACATTTCTG 59.408 42.308 0.00 0.00 0.00 3.02
98 99 4.583871 GGATATACATTTCTGAGCCCAGG 58.416 47.826 0.00 0.00 40.76 4.45
127 128 6.771573 TCTTCACCCGGTTAAGAGAAAATTA 58.228 36.000 9.73 0.00 0.00 1.40
226 263 6.932356 TTGGACAAATGAATAGCTCTCATC 57.068 37.500 10.75 1.48 32.26 2.92
239 276 9.943163 GAATAGCTCTCATCAAAAAGGATAAAC 57.057 33.333 0.00 0.00 0.00 2.01
320 357 4.076394 GCCGAGAACTACTCAGATATCCT 58.924 47.826 0.00 0.00 45.14 3.24
350 387 0.600255 AGTTTGAAGTGGACCTCGCG 60.600 55.000 0.00 0.00 0.00 5.87
373 410 3.081061 ACCTACGCATCTTTCATGCAAA 58.919 40.909 7.32 0.00 44.75 3.68
375 412 4.201950 ACCTACGCATCTTTCATGCAAATC 60.202 41.667 7.32 0.00 44.75 2.17
376 413 3.853831 ACGCATCTTTCATGCAAATCA 57.146 38.095 7.32 0.00 44.75 2.57
380 417 5.640357 ACGCATCTTTCATGCAAATCATTTT 59.360 32.000 7.32 0.00 44.75 1.82
441 479 1.351076 TCACCACAGGAGCAGATGAA 58.649 50.000 0.00 0.00 0.00 2.57
444 482 1.701847 ACCACAGGAGCAGATGAACTT 59.298 47.619 0.00 0.00 0.00 2.66
677 1020 1.491563 GGCGTGTCACGTAGCAAAG 59.508 57.895 25.18 0.00 44.73 2.77
1546 1916 3.083997 GGATCACGGGGAGGCAGT 61.084 66.667 0.00 0.00 0.00 4.40
1554 1924 3.003763 GGGAGGCAGTTCGAGGGT 61.004 66.667 0.00 0.00 0.00 4.34
1960 2346 2.615447 ACTTATGATGCAACAGATGGCG 59.385 45.455 2.25 0.00 0.00 5.69
1961 2347 1.596603 TATGATGCAACAGATGGCGG 58.403 50.000 2.25 0.00 0.00 6.13
2087 2474 0.329261 TCTGGAATTCTGGTGCAGGG 59.671 55.000 5.23 0.00 35.34 4.45
2375 2762 1.672881 GCATATCAGGTTCGCTTTGCT 59.327 47.619 0.00 0.00 0.00 3.91
2461 2848 6.235664 TGAAATTCCTAGTGACACCCTTTAC 58.764 40.000 0.84 0.00 0.00 2.01
2630 3017 5.992217 ACTGAATTATCGGGTTGAGCTTATC 59.008 40.000 0.00 0.00 36.16 1.75
3029 3453 1.872773 TCACTGGGCCCTTTTTGTTT 58.127 45.000 25.70 0.00 0.00 2.83
3070 3494 1.623973 GCCGTCTGCTGTTCGGTTAC 61.624 60.000 21.83 9.43 45.11 2.50
3127 3551 0.991920 TGAGGGGAAAACAGCCTAGG 59.008 55.000 3.67 3.67 0.00 3.02
3130 3554 0.965866 GGGGAAAACAGCCTAGGCAC 60.966 60.000 34.70 17.15 44.88 5.01
3184 3608 4.018415 CCCTCCCTTCCAGAATACTTTTCA 60.018 45.833 0.00 0.00 0.00 2.69
3563 3991 3.440173 ACGCAAGCAATATTGTAACAGCT 59.560 39.130 16.61 3.74 45.62 4.24
3620 4048 3.554934 TGTGGAAAGTTCTCAGTGCATT 58.445 40.909 0.00 0.00 0.00 3.56
4133 4630 8.647143 AATATTTTATGATGCCTTGTTTTCCG 57.353 30.769 0.00 0.00 0.00 4.30
4144 4641 4.726876 GCCTTGTTTTCCGATTTAGCTACG 60.727 45.833 0.00 0.00 0.00 3.51
4167 4664 4.022849 GTGTTGTCTTGAGCAGGCTAATTT 60.023 41.667 0.00 0.00 0.00 1.82
4208 4705 0.394938 TTTGTGTTGCTAGGGCGAGA 59.605 50.000 0.00 0.00 42.25 4.04
4245 4752 6.024552 ACATATCCGATGCTTGTTTGTTTT 57.975 33.333 0.00 0.00 0.00 2.43
4331 4838 7.750014 TGATCGACATGTTGTGATTGTTATTTG 59.250 33.333 12.90 0.00 0.00 2.32
4508 5015 2.266055 CTGTCCCTCTTGTCCGCC 59.734 66.667 0.00 0.00 0.00 6.13
4600 5107 5.757320 CCGCATCTCTAAGTTCTTGATTGAT 59.243 40.000 0.00 0.00 0.00 2.57
4601 5108 6.259608 CCGCATCTCTAAGTTCTTGATTGATT 59.740 38.462 0.00 0.00 0.00 2.57
4602 5109 7.124471 CGCATCTCTAAGTTCTTGATTGATTG 58.876 38.462 0.00 0.00 0.00 2.67
4603 5110 7.010830 CGCATCTCTAAGTTCTTGATTGATTGA 59.989 37.037 0.00 0.00 0.00 2.57
4607 5114 7.757173 TCTCTAAGTTCTTGATTGATTGACTCG 59.243 37.037 0.00 0.00 0.00 4.18
4620 5127 4.427661 ACTCGACGAGCTGCAGCC 62.428 66.667 34.39 23.65 43.38 4.85
4636 5143 1.547372 CAGCCCAAGAAACCAATGGAG 59.453 52.381 6.16 0.00 36.27 3.86
4641 5148 4.621510 GCCCAAGAAACCAATGGAGAAATC 60.622 45.833 6.16 0.00 36.27 2.17
4642 5149 4.774200 CCCAAGAAACCAATGGAGAAATCT 59.226 41.667 6.16 0.00 36.27 2.40
4664 5171 3.931578 AGAGTGTGGCTTGATTCTACAC 58.068 45.455 0.00 0.00 41.32 2.90
4670 5177 2.637382 TGGCTTGATTCTACACACAGGA 59.363 45.455 0.00 0.00 0.00 3.86
4671 5178 3.072330 TGGCTTGATTCTACACACAGGAA 59.928 43.478 0.00 0.00 0.00 3.36
4672 5179 3.686726 GGCTTGATTCTACACACAGGAAG 59.313 47.826 0.00 0.00 0.00 3.46
4673 5180 4.319177 GCTTGATTCTACACACAGGAAGT 58.681 43.478 0.00 0.00 0.00 3.01
4692 5248 2.747989 AGTGCTCATCAACATCAAGCTG 59.252 45.455 0.00 0.00 34.11 4.24
4708 5264 3.399440 AGCTGAGAAGAGTTTGACCAG 57.601 47.619 0.00 0.00 0.00 4.00
4715 5271 6.180472 TGAGAAGAGTTTGACCAGTTTCTTT 58.820 36.000 0.00 0.00 0.00 2.52
4971 5537 5.462068 GGTATCTGTTTCACCTTTTGTTTGC 59.538 40.000 0.00 0.00 0.00 3.68
4973 5539 5.146010 TCTGTTTCACCTTTTGTTTGCTT 57.854 34.783 0.00 0.00 0.00 3.91
4983 5549 6.149308 CACCTTTTGTTTGCTTCTTTTTCCTT 59.851 34.615 0.00 0.00 0.00 3.36
4985 5551 7.880713 ACCTTTTGTTTGCTTCTTTTTCCTTTA 59.119 29.630 0.00 0.00 0.00 1.85
5001 5567 7.681939 TTTCCTTTATGCTAGTCGAACAATT 57.318 32.000 0.00 0.00 0.00 2.32
5246 5816 8.079203 ACATCTTAGTAGTAGCAATCTTGATCG 58.921 37.037 0.00 0.00 0.00 3.69
5285 5855 1.871080 CGATCTGTATTGGCACCTCC 58.129 55.000 0.00 0.00 0.00 4.30
5366 5940 3.434319 GCACGGCACATGGACCTG 61.434 66.667 0.00 0.19 0.00 4.00
5367 5941 2.347114 CACGGCACATGGACCTGA 59.653 61.111 0.00 0.00 0.00 3.86
5368 5942 1.742880 CACGGCACATGGACCTGAG 60.743 63.158 0.00 0.00 0.00 3.35
5369 5943 1.913262 ACGGCACATGGACCTGAGA 60.913 57.895 0.00 0.00 0.00 3.27
5370 5944 1.153489 CGGCACATGGACCTGAGAG 60.153 63.158 0.00 0.00 0.00 3.20
5371 5945 1.451028 GGCACATGGACCTGAGAGC 60.451 63.158 0.00 0.00 0.00 4.09
5450 6027 4.426313 GGCTCCCCAAACCCTCCG 62.426 72.222 0.00 0.00 0.00 4.63
5469 6046 3.473093 CGTATACGCTCGGATTGATCT 57.527 47.619 13.08 0.00 0.00 2.75
5470 6047 4.595198 CGTATACGCTCGGATTGATCTA 57.405 45.455 13.08 0.00 0.00 1.98
5538 6127 4.657969 GGGCTCCTCATTATGGCTCTATAT 59.342 45.833 0.00 0.00 0.00 0.86
5570 6159 1.625315 CCGGCATCCCTCATATTCAGA 59.375 52.381 0.00 0.00 0.00 3.27
5587 6176 2.196295 AGACTAAATCTGAGACGCGC 57.804 50.000 5.73 0.00 35.81 6.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.375845 TCCCCTCGTATTTTGGGTCAAA 59.624 45.455 0.00 0.00 39.31 2.69
7 8 1.986631 TCCCCTCGTATTTTGGGTCAA 59.013 47.619 0.00 0.00 39.31 3.18
8 9 1.279846 GTCCCCTCGTATTTTGGGTCA 59.720 52.381 0.00 0.00 39.31 4.02
22 23 0.916809 CCGAGTTTATTGGGTCCCCT 59.083 55.000 5.13 0.00 36.94 4.79
42 43 6.440436 CCTTCTATTTAGGTACTCTCTTCGC 58.560 44.000 0.00 0.00 41.75 4.70
49 50 7.657023 TTCAGACCCTTCTATTTAGGTACTC 57.343 40.000 0.00 0.00 41.75 2.59
71 72 5.582665 GGGCTCAGAAATGTATATCCGATTC 59.417 44.000 0.00 0.00 0.00 2.52
77 78 4.006319 GCCTGGGCTCAGAAATGTATATC 58.994 47.826 17.43 0.00 43.49 1.63
82 83 1.377725 CGCCTGGGCTCAGAAATGT 60.378 57.895 17.43 0.00 43.49 2.71
90 91 2.899339 GAAGATGCGCCTGGGCTC 60.899 66.667 4.18 2.14 39.32 4.70
98 99 1.022451 TTAACCGGGTGAAGATGCGC 61.022 55.000 0.00 0.00 0.00 6.09
100 101 2.093658 TCTCTTAACCGGGTGAAGATGC 60.094 50.000 24.22 0.00 33.12 3.91
180 217 3.273434 TGATCTGAATTTTGGAGCGGAG 58.727 45.455 0.00 0.00 0.00 4.63
226 263 5.335976 GCTCTGACCCAGTTTATCCTTTTTG 60.336 44.000 0.00 0.00 32.61 2.44
239 276 2.382882 TCATCTACTGCTCTGACCCAG 58.617 52.381 0.00 0.00 35.26 4.45
305 342 7.465960 TGAGCTCATTAGGATATCTGAGTAGT 58.534 38.462 13.74 6.41 34.80 2.73
320 357 5.470098 GTCCACTTCAAACTTGAGCTCATTA 59.530 40.000 19.04 1.97 38.61 1.90
350 387 1.268234 GCATGAAAGATGCGTAGGTGC 60.268 52.381 0.00 0.00 35.17 5.01
428 466 1.280133 TCCCAAGTTCATCTGCTCCTG 59.720 52.381 0.00 0.00 0.00 3.86
441 479 0.394352 CGGCTATTTGGCTCCCAAGT 60.394 55.000 0.00 0.00 44.84 3.16
444 482 2.124320 GCGGCTATTTGGCTCCCA 60.124 61.111 0.00 0.00 39.32 4.37
677 1020 9.505995 TTGGACTTTGTAATAAAAACGAAACTC 57.494 29.630 0.00 0.00 0.00 3.01
884 1227 4.735358 GGTGTTTCGGGGGCCTCC 62.735 72.222 13.54 13.54 0.00 4.30
893 1236 2.434359 GAGGGAGCGGGTGTTTCG 60.434 66.667 0.00 0.00 0.00 3.46
1961 2347 1.400494 CACAAGCTGGGCGTTAATACC 59.600 52.381 0.00 0.00 0.00 2.73
2087 2474 6.558009 TGACAAGTAATACTCGTACCATCAC 58.442 40.000 0.00 0.00 0.00 3.06
2129 2516 0.387112 TACCGCGTTGTGTTCTACCG 60.387 55.000 4.92 0.00 0.00 4.02
2375 2762 0.685785 TTCTGCAGGTGGTGGCAAAA 60.686 50.000 15.13 0.00 39.93 2.44
2537 2924 7.827236 CCTAACTATGTGTACCTTCAAATGGAA 59.173 37.037 0.00 0.00 0.00 3.53
2630 3017 4.661125 CCAATGTTCACCATATGTTGTCG 58.339 43.478 1.24 0.00 31.97 4.35
2713 3100 5.491070 CAAGTTGGATCAGTGGTAATCTGA 58.509 41.667 0.00 0.00 44.37 3.27
2714 3101 4.637534 CCAAGTTGGATCAGTGGTAATCTG 59.362 45.833 17.60 0.00 40.96 2.90
2715 3102 4.848357 CCAAGTTGGATCAGTGGTAATCT 58.152 43.478 17.60 0.00 40.96 2.40
2716 3103 3.378427 GCCAAGTTGGATCAGTGGTAATC 59.622 47.826 26.52 0.00 40.96 1.75
3029 3453 5.978322 GGCTCGGTTGTTAATTTGTGTAAAA 59.022 36.000 0.00 0.00 0.00 1.52
3070 3494 3.616219 TCGGGTTCCACTATCAAAATGG 58.384 45.455 0.00 0.00 34.58 3.16
3127 3551 4.240096 GCCAAATATGATATGCAAGGTGC 58.760 43.478 0.00 0.00 45.29 5.01
3200 3624 6.652205 TTACTCCCTCCATTCCAAAATACT 57.348 37.500 0.00 0.00 0.00 2.12
3542 3970 4.019919 AGCTGTTACAATATTGCTTGCG 57.980 40.909 15.48 3.22 0.00 4.85
3578 4006 3.626996 TTGTGCAGGATCCTGGCCG 62.627 63.158 36.92 17.11 43.77 6.13
3620 4048 7.362834 CCATCATTTACAGCTTCCAACATTGTA 60.363 37.037 0.00 0.00 0.00 2.41
3804 4233 3.368116 GGACCATAAGTTACGTGCAGAGT 60.368 47.826 0.00 0.00 0.00 3.24
3871 4300 3.054361 GGGGATGGGCACTTATTCGATAT 60.054 47.826 0.00 0.00 0.00 1.63
4033 4530 7.497595 ACGAAGCATAGTTGGATCTTATGTAA 58.502 34.615 0.00 0.00 0.00 2.41
4099 4596 8.186709 AGGCATCATAAAATATTCCCTTTCAG 57.813 34.615 0.00 0.00 0.00 3.02
4100 4597 8.423349 CAAGGCATCATAAAATATTCCCTTTCA 58.577 33.333 0.00 0.00 0.00 2.69
4105 4602 8.962884 AAAACAAGGCATCATAAAATATTCCC 57.037 30.769 0.00 0.00 0.00 3.97
4116 4613 4.806640 AAATCGGAAAACAAGGCATCAT 57.193 36.364 0.00 0.00 0.00 2.45
4133 4630 5.444745 GCTCAAGACAACACGTAGCTAAATC 60.445 44.000 0.00 0.00 0.00 2.17
4144 4641 2.169832 TAGCCTGCTCAAGACAACAC 57.830 50.000 0.00 0.00 0.00 3.32
4167 4664 4.820897 AGCACAAGACTGAATAATCGACA 58.179 39.130 0.00 0.00 0.00 4.35
4208 4705 7.468631 GCATCGGATATGTAGGAAAAATGTGTT 60.469 37.037 0.00 0.00 0.00 3.32
4245 4752 1.610038 CACAGCTCAGCATGTTTTGGA 59.390 47.619 0.00 0.00 37.40 3.53
4331 4838 1.079612 GCCCACCTGCATTTTCAGC 60.080 57.895 0.00 0.00 32.87 4.26
4487 4994 1.599576 GGACAAGAGGGACAGCTCC 59.400 63.158 0.00 0.00 35.50 4.70
4491 4998 2.266055 GGCGGACAAGAGGGACAG 59.734 66.667 0.00 0.00 0.00 3.51
4600 5107 1.081175 CTGCAGCTCGTCGAGTCAA 60.081 57.895 22.61 6.52 31.39 3.18
4601 5108 2.563427 CTGCAGCTCGTCGAGTCA 59.437 61.111 22.61 16.19 31.39 3.41
4602 5109 2.878520 GCTGCAGCTCGTCGAGTC 60.879 66.667 31.33 14.84 38.21 3.36
4603 5110 4.427661 GGCTGCAGCTCGTCGAGT 62.428 66.667 35.82 7.70 41.70 4.18
4607 5114 3.123620 CTTGGGCTGCAGCTCGTC 61.124 66.667 35.82 20.30 46.72 4.20
4620 5127 5.990120 AGATTTCTCCATTGGTTTCTTGG 57.010 39.130 1.86 0.00 0.00 3.61
4636 5143 6.112058 AGAATCAAGCCACACTCTAGATTTC 58.888 40.000 0.00 0.00 29.55 2.17
4641 5148 5.105752 GTGTAGAATCAAGCCACACTCTAG 58.894 45.833 0.00 0.00 37.20 2.43
4642 5149 4.526650 TGTGTAGAATCAAGCCACACTCTA 59.473 41.667 4.95 0.00 40.08 2.43
4670 5177 3.190744 CAGCTTGATGTTGATGAGCACTT 59.809 43.478 0.00 0.00 35.86 3.16
4671 5178 2.747989 CAGCTTGATGTTGATGAGCACT 59.252 45.455 0.00 0.00 35.86 4.40
4672 5179 2.745821 TCAGCTTGATGTTGATGAGCAC 59.254 45.455 0.00 0.00 35.86 4.40
4673 5180 3.007635 CTCAGCTTGATGTTGATGAGCA 58.992 45.455 0.00 0.00 35.40 4.26
4675 5182 5.176592 TCTTCTCAGCTTGATGTTGATGAG 58.823 41.667 0.00 0.00 35.40 2.90
4692 5248 6.540551 AGAAAGAAACTGGTCAAACTCTTCTC 59.459 38.462 0.00 0.00 0.00 2.87
4708 5264 1.131315 GGCCAGCATCGAGAAAGAAAC 59.869 52.381 0.00 0.00 0.00 2.78
4715 5271 4.147449 CACCGGCCAGCATCGAGA 62.147 66.667 0.00 0.00 0.00 4.04
4971 5537 7.596749 TCGACTAGCATAAAGGAAAAAGAAG 57.403 36.000 0.00 0.00 0.00 2.85
4973 5539 6.932400 TGTTCGACTAGCATAAAGGAAAAAGA 59.068 34.615 0.00 0.00 0.00 2.52
5001 5567 2.296831 TCACGTCACCAACTTTCGAA 57.703 45.000 0.00 0.00 0.00 3.71
5107 5675 5.559148 ATTAGGCAGATCTACAGAAAGGG 57.441 43.478 0.00 0.00 0.00 3.95
5285 5855 2.427453 ACAGGCACCAGATTACTACTCG 59.573 50.000 0.00 0.00 0.00 4.18
5371 5945 0.798389 TGAAAGACAGCGCGATCTCG 60.798 55.000 12.10 0.00 43.27 4.04
5450 6027 4.787083 CGTTAGATCAATCCGAGCGTATAC 59.213 45.833 0.00 0.00 34.30 1.47
5467 6044 0.099968 CGATCAAGCCGTCCGTTAGA 59.900 55.000 0.00 0.00 0.00 2.10
5468 6045 1.480219 GCGATCAAGCCGTCCGTTAG 61.480 60.000 0.00 0.00 0.00 2.34
5469 6046 1.517694 GCGATCAAGCCGTCCGTTA 60.518 57.895 0.00 0.00 0.00 3.18
5470 6047 2.813908 GCGATCAAGCCGTCCGTT 60.814 61.111 0.00 0.00 0.00 4.44
5507 6094 0.692419 AATGAGGAGCCCGTCTGGAT 60.692 55.000 0.00 0.00 37.49 3.41
5508 6095 0.032515 TAATGAGGAGCCCGTCTGGA 60.033 55.000 0.00 0.00 37.49 3.86
5570 6159 2.263077 CTTGCGCGTCTCAGATTTAGT 58.737 47.619 8.43 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.