Multiple sequence alignment - TraesCS7D01G247400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G247400 chr7D 100.000 3329 0 0 1 3329 217693128 217696456 0.000000e+00 6148
1 TraesCS7D01G247400 chr7D 90.341 1905 142 14 466 2359 629773055 629771182 0.000000e+00 2460
2 TraesCS7D01G247400 chr4D 90.972 2880 172 34 474 3329 103551515 103554330 0.000000e+00 3797
3 TraesCS7D01G247400 chr4D 94.056 1817 85 14 1531 3329 8436646 8434835 0.000000e+00 2736
4 TraesCS7D01G247400 chr4D 90.685 1825 105 26 1531 3329 364997237 364999022 0.000000e+00 2368
5 TraesCS7D01G247400 chr4D 91.255 1052 79 7 473 1516 8437678 8436632 0.000000e+00 1421
6 TraesCS7D01G247400 chr4D 90.409 636 58 3 7 641 30259288 30258655 0.000000e+00 833
7 TraesCS7D01G247400 chr4D 94.152 171 10 0 473 643 305259750 305259580 9.160000e-66 261
8 TraesCS7D01G247400 chr4D 90.576 191 18 0 452 642 473177099 473177289 1.530000e-63 254
9 TraesCS7D01G247400 chr1A 89.903 2882 220 27 469 3329 93052894 93050063 0.000000e+00 3644
10 TraesCS7D01G247400 chr3B 89.940 2843 206 35 459 3278 559345521 559348306 0.000000e+00 3592
11 TraesCS7D01G247400 chr3D 93.573 1805 90 15 1536 3328 59190667 59192457 0.000000e+00 2667
12 TraesCS7D01G247400 chr3D 93.220 1180 54 7 1698 2868 93565674 93566836 0.000000e+00 1712
13 TraesCS7D01G247400 chr3D 91.088 1066 63 13 463 1516 427821521 427822566 0.000000e+00 1413
14 TraesCS7D01G247400 chr3D 93.590 468 30 0 1 468 248503119 248503586 0.000000e+00 699
15 TraesCS7D01G247400 chr3D 91.892 185 15 0 459 643 497247397 497247581 3.290000e-65 259
16 TraesCS7D01G247400 chr6A 91.877 1822 112 25 1531 3329 304292875 304294683 0.000000e+00 2512
17 TraesCS7D01G247400 chr6A 91.192 1737 131 17 1604 3327 364206972 364208699 0.000000e+00 2340
18 TraesCS7D01G247400 chr6A 89.141 1059 103 6 458 1506 364205257 364206313 0.000000e+00 1308
19 TraesCS7D01G247400 chr3A 94.114 1495 75 9 1531 3016 557915622 557914132 0.000000e+00 2261
20 TraesCS7D01G247400 chr3A 90.860 930 72 7 596 1516 557916533 557915608 0.000000e+00 1234
21 TraesCS7D01G247400 chr7B 91.447 1520 99 15 1833 3329 564603259 564604770 0.000000e+00 2058
22 TraesCS7D01G247400 chr7A 88.658 1058 101 12 473 1516 235151229 235152281 0.000000e+00 1271
23 TraesCS7D01G247400 chr4B 93.719 812 42 7 2526 3329 363367629 363368439 0.000000e+00 1208
24 TraesCS7D01G247400 chr4B 92.411 817 46 13 2526 3329 529149987 529149174 0.000000e+00 1151
25 TraesCS7D01G247400 chr4B 93.723 462 29 0 7 468 110878631 110878170 0.000000e+00 693
26 TraesCS7D01G247400 chr4B 95.322 171 8 0 473 643 189228752 189228922 4.230000e-69 272
27 TraesCS7D01G247400 chr5D 91.024 635 57 0 8 642 317936472 317935838 0.000000e+00 857
28 TraesCS7D01G247400 chr5D 93.939 462 28 0 7 468 169570240 169569779 0.000000e+00 699
29 TraesCS7D01G247400 chr1D 94.130 460 27 0 9 468 12732622 12732163 0.000000e+00 701
30 TraesCS7D01G247400 chr1D 93.376 468 31 0 1 468 143547402 143547869 0.000000e+00 693
31 TraesCS7D01G247400 chr1D 93.723 462 29 0 7 468 302452062 302451601 0.000000e+00 693
32 TraesCS7D01G247400 chr6B 87.690 593 70 3 7 597 139286415 139285824 0.000000e+00 688
33 TraesCS7D01G247400 chr6D 92.708 192 11 3 453 643 338747908 338747719 1.180000e-69 274


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G247400 chr7D 217693128 217696456 3328 False 6148.0 6148 100.0000 1 3329 1 chr7D.!!$F1 3328
1 TraesCS7D01G247400 chr7D 629771182 629773055 1873 True 2460.0 2460 90.3410 466 2359 1 chr7D.!!$R1 1893
2 TraesCS7D01G247400 chr4D 103551515 103554330 2815 False 3797.0 3797 90.9720 474 3329 1 chr4D.!!$F1 2855
3 TraesCS7D01G247400 chr4D 364997237 364999022 1785 False 2368.0 2368 90.6850 1531 3329 1 chr4D.!!$F2 1798
4 TraesCS7D01G247400 chr4D 8434835 8437678 2843 True 2078.5 2736 92.6555 473 3329 2 chr4D.!!$R3 2856
5 TraesCS7D01G247400 chr4D 30258655 30259288 633 True 833.0 833 90.4090 7 641 1 chr4D.!!$R1 634
6 TraesCS7D01G247400 chr1A 93050063 93052894 2831 True 3644.0 3644 89.9030 469 3329 1 chr1A.!!$R1 2860
7 TraesCS7D01G247400 chr3B 559345521 559348306 2785 False 3592.0 3592 89.9400 459 3278 1 chr3B.!!$F1 2819
8 TraesCS7D01G247400 chr3D 59190667 59192457 1790 False 2667.0 2667 93.5730 1536 3328 1 chr3D.!!$F1 1792
9 TraesCS7D01G247400 chr3D 93565674 93566836 1162 False 1712.0 1712 93.2200 1698 2868 1 chr3D.!!$F2 1170
10 TraesCS7D01G247400 chr3D 427821521 427822566 1045 False 1413.0 1413 91.0880 463 1516 1 chr3D.!!$F4 1053
11 TraesCS7D01G247400 chr6A 304292875 304294683 1808 False 2512.0 2512 91.8770 1531 3329 1 chr6A.!!$F1 1798
12 TraesCS7D01G247400 chr6A 364205257 364208699 3442 False 1824.0 2340 90.1665 458 3327 2 chr6A.!!$F2 2869
13 TraesCS7D01G247400 chr3A 557914132 557916533 2401 True 1747.5 2261 92.4870 596 3016 2 chr3A.!!$R1 2420
14 TraesCS7D01G247400 chr7B 564603259 564604770 1511 False 2058.0 2058 91.4470 1833 3329 1 chr7B.!!$F1 1496
15 TraesCS7D01G247400 chr7A 235151229 235152281 1052 False 1271.0 1271 88.6580 473 1516 1 chr7A.!!$F1 1043
16 TraesCS7D01G247400 chr4B 363367629 363368439 810 False 1208.0 1208 93.7190 2526 3329 1 chr4B.!!$F2 803
17 TraesCS7D01G247400 chr4B 529149174 529149987 813 True 1151.0 1151 92.4110 2526 3329 1 chr4B.!!$R2 803
18 TraesCS7D01G247400 chr5D 317935838 317936472 634 True 857.0 857 91.0240 8 642 1 chr5D.!!$R2 634
19 TraesCS7D01G247400 chr6B 139285824 139286415 591 True 688.0 688 87.6900 7 597 1 chr6B.!!$R1 590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
799 821 0.324368 TAGCACGTCTCCATGGGACT 60.324 55.0 22.97 12.17 0.0 3.85 F
934 959 0.394488 TCGCTCTCCTCCACTACCTG 60.394 60.0 0.00 0.00 0.0 4.00 F
992 1017 0.460987 CTCACCTTCATCGCCTCCAC 60.461 60.0 0.00 0.00 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2270 2920 1.040646 GTAGTCCTCGCCATGGATGA 58.959 55.000 18.40 11.57 35.87 2.92 R
2316 2967 1.089123 AGGGGAGTCAGGACTTCTCT 58.911 55.000 4.19 4.19 42.93 3.10 R
2386 3047 2.358898 ACATCCAGTTCACACACAAAGC 59.641 45.455 0.00 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 7.849804 TTCCTTATGAGAAATTAGCTGTCAC 57.150 36.000 0.00 0.00 0.00 3.67
65 66 6.243148 TCTCGTAATACTCCATGGTATGCTA 58.757 40.000 12.58 0.00 33.31 3.49
207 209 7.839705 AGAAGGAGTAGATGGTGTTATTAGACA 59.160 37.037 0.00 0.00 0.00 3.41
230 232 4.019792 TGTGTACCTGAGCATGAACATT 57.980 40.909 0.00 0.00 0.00 2.71
243 245 6.653020 AGCATGAACATTAACAGATCCTACA 58.347 36.000 0.00 0.00 0.00 2.74
286 288 1.654954 GAGGACACCGCGCTAGAGAA 61.655 60.000 5.56 0.00 0.00 2.87
293 295 1.135344 ACCGCGCTAGAGAAAGAACTC 60.135 52.381 5.56 0.00 37.19 3.01
305 307 4.704965 AGAAAGAACTCCACACAAGGTAC 58.295 43.478 0.00 0.00 0.00 3.34
313 315 2.371841 TCCACACAAGGTACTGCAATCT 59.628 45.455 0.00 0.00 40.86 2.40
324 326 7.539034 AGGTACTGCAATCTGGTTTTTATTT 57.461 32.000 0.00 0.00 37.18 1.40
376 378 4.754372 TGTCTTGTCTTGTGATGAATGC 57.246 40.909 0.00 0.00 0.00 3.56
511 513 5.817816 CCCTGGTTCATTAGTTGTACTCATC 59.182 44.000 0.00 0.00 0.00 2.92
652 671 1.216178 GCCGCGTAGTCCACCTTTA 59.784 57.895 4.92 0.00 0.00 1.85
667 686 5.012354 TCCACCTTTAACCGTTAACTCTGAT 59.988 40.000 3.10 0.00 0.00 2.90
762 784 4.409187 TCATATACATGGGTGCATGCAAT 58.591 39.130 24.58 12.96 36.08 3.56
788 810 2.126189 GTCGTGGGGTAGCACGTC 60.126 66.667 0.00 0.00 44.21 4.34
799 821 0.324368 TAGCACGTCTCCATGGGACT 60.324 55.000 22.97 12.17 0.00 3.85
883 907 2.319762 CCCAAATCCCCTCCCTGCT 61.320 63.158 0.00 0.00 0.00 4.24
934 959 0.394488 TCGCTCTCCTCCACTACCTG 60.394 60.000 0.00 0.00 0.00 4.00
949 974 4.363990 CTGCACCGCACCGTCTCT 62.364 66.667 0.00 0.00 33.79 3.10
992 1017 0.460987 CTCACCTTCATCGCCTCCAC 60.461 60.000 0.00 0.00 0.00 4.02
1127 1152 2.031465 GGGGAAACTCGCAACCGA 59.969 61.111 0.00 0.00 42.01 4.69
1147 1172 0.614697 TGCGGATGTGGAGAAGGAGA 60.615 55.000 0.00 0.00 0.00 3.71
1196 1222 1.004277 CAGAAGGTGACAGCGTCGAC 61.004 60.000 13.63 5.18 34.95 4.20
1313 1339 8.100791 AGAGTTAGTTGCATTGGTTAGATTGTA 58.899 33.333 0.00 0.00 0.00 2.41
1345 1371 7.059156 ACGGTAGTACAGAATGGTTAGAGTAT 58.941 38.462 7.48 0.00 43.62 2.12
1357 1383 5.856156 TGGTTAGAGTATTTGGTTTGACGA 58.144 37.500 0.00 0.00 0.00 4.20
1359 1385 6.203338 TGGTTAGAGTATTTGGTTTGACGAAC 59.797 38.462 0.00 0.00 37.53 3.95
1368 1394 2.809307 TTTGACGAACGGGCCAGGA 61.809 57.895 8.08 0.00 0.00 3.86
1453 1486 7.961827 GCAAAAATGCTAGATAGATCTGTATGC 59.038 37.037 5.18 4.82 37.76 3.14
1467 1500 5.437191 TCTGTATGCGAGATAGGGATCTA 57.563 43.478 0.00 0.00 42.80 1.98
1507 1540 8.526218 ACACAGATGTATGCTTATTAGATTCG 57.474 34.615 0.00 0.00 37.26 3.34
1508 1541 8.144478 ACACAGATGTATGCTTATTAGATTCGT 58.856 33.333 0.00 0.00 37.26 3.85
1509 1542 8.982685 CACAGATGTATGCTTATTAGATTCGTT 58.017 33.333 0.00 0.00 0.00 3.85
1510 1543 9.547753 ACAGATGTATGCTTATTAGATTCGTTT 57.452 29.630 0.00 0.00 0.00 3.60
1619 2262 7.712204 TTGGGTCCCTATTAGATTTGTTTTC 57.288 36.000 10.00 0.00 0.00 2.29
1775 2418 4.593597 GCATGACAATGGAAAATGCAAG 57.406 40.909 0.00 0.00 42.48 4.01
1896 2540 2.268796 TCAGGAGGATGATGGTTGGA 57.731 50.000 0.00 0.00 0.00 3.53
1938 2583 0.690762 TACTGGGTTCAAGGACCTGC 59.309 55.000 0.00 0.00 39.71 4.85
1961 2606 3.949754 ACGATCCAAGGTATAGTGACGAA 59.050 43.478 0.00 0.00 0.00 3.85
1974 2619 7.441760 GGTATAGTGACGAAGAAGAGTATGAGA 59.558 40.741 0.00 0.00 0.00 3.27
2144 2794 3.118956 GCGAAGGAAGAGGAGAAGATCAA 60.119 47.826 0.00 0.00 0.00 2.57
2184 2834 2.185004 ACTACAAGCGCAAGACCAAT 57.815 45.000 11.47 0.00 43.02 3.16
2270 2920 4.892345 TCTAGCTCATGCAGAAGATGTAGT 59.108 41.667 0.00 0.00 42.74 2.73
2336 2989 1.435168 AGAGAAGTCCTGACTCCCCTT 59.565 52.381 0.00 0.00 41.58 3.95
2337 2990 1.828595 GAGAAGTCCTGACTCCCCTTC 59.171 57.143 0.00 0.00 41.58 3.46
2386 3047 8.934507 TTAATTACTTTTGGTTGTTTGGTGAG 57.065 30.769 0.00 0.00 0.00 3.51
2759 3430 0.671472 GCTTTTTCCCACCAGCATGC 60.671 55.000 10.51 10.51 32.17 4.06
2783 3455 6.719365 CCTCATTATCCGATGTTTTGAACTC 58.281 40.000 0.00 0.00 0.00 3.01
2809 3481 6.761714 ACATTCGACAGGACAGTATAAATTCC 59.238 38.462 0.00 0.00 0.00 3.01
2849 3538 5.193679 ACCTTGGCAACCTATCTATGTTTC 58.806 41.667 0.00 0.00 0.00 2.78
2903 3592 6.372937 GGTGATTTAGAGGAGGTCAAAGAAAG 59.627 42.308 0.00 0.00 0.00 2.62
2926 3615 4.424061 TGAATTTGAGAAATGTGCTCCG 57.576 40.909 0.00 0.00 0.00 4.63
3273 3987 7.956420 TGAACTCTATGAAATGTTGTACGTT 57.044 32.000 0.00 0.00 0.00 3.99
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.819825 AATTTCTCATAAGGAAAGCCGTC 57.180 39.130 0.00 0.00 39.96 4.79
4 5 5.529060 AGCTAATTTCTCATAAGGAAAGCCG 59.471 40.000 0.00 0.00 39.96 5.52
5 6 6.319911 ACAGCTAATTTCTCATAAGGAAAGCC 59.680 38.462 0.00 0.00 36.35 4.35
14 15 7.337689 AGCATTTGTGACAGCTAATTTCTCATA 59.662 33.333 0.00 0.00 35.19 2.15
19 20 6.385033 AGAAGCATTTGTGACAGCTAATTTC 58.615 36.000 0.00 0.00 36.07 2.17
20 21 6.336842 AGAAGCATTTGTGACAGCTAATTT 57.663 33.333 0.00 0.00 36.07 1.82
33 34 6.293081 CCATGGAGTATTACGAGAAGCATTTG 60.293 42.308 5.56 0.00 0.00 2.32
172 173 7.988028 ACACCATCTACTCCTTCTTTATAAAGC 59.012 37.037 18.68 0.00 35.99 3.51
207 209 4.019792 TGTTCATGCTCAGGTACACAAT 57.980 40.909 0.00 0.00 0.00 2.71
230 232 5.538813 AGTGACACTTGTGTAGGATCTGTTA 59.461 40.000 1.07 0.00 0.00 2.41
243 245 1.115930 AGCCTCGGAGTGACACTTGT 61.116 55.000 10.01 0.00 0.00 3.16
276 278 2.263945 GTGGAGTTCTTTCTCTAGCGC 58.736 52.381 0.00 0.00 35.11 5.92
281 283 3.456277 ACCTTGTGTGGAGTTCTTTCTCT 59.544 43.478 0.00 0.00 35.11 3.10
286 288 3.744530 GCAGTACCTTGTGTGGAGTTCTT 60.745 47.826 0.00 0.00 0.00 2.52
293 295 2.485426 CAGATTGCAGTACCTTGTGTGG 59.515 50.000 0.00 0.00 0.00 4.17
305 307 5.240121 AGGCAAATAAAAACCAGATTGCAG 58.760 37.500 10.05 0.00 43.59 4.41
313 315 7.001674 TGAAGAGAGTAGGCAAATAAAAACCA 58.998 34.615 0.00 0.00 0.00 3.67
324 326 2.169352 GCATCCTTGAAGAGAGTAGGCA 59.831 50.000 0.00 0.00 0.00 4.75
376 378 7.116948 CGTCTACTAATATTGCCAATTCTCTGG 59.883 40.741 0.00 0.00 39.71 3.86
388 390 7.095607 GGCATTTCCTGACGTCTACTAATATTG 60.096 40.741 17.92 5.05 0.00 1.90
448 450 5.206905 ACCTATAATCAAAGCCCCAAACT 57.793 39.130 0.00 0.00 0.00 2.66
511 513 0.541863 AGTTAAGAGCGTGGGGATGG 59.458 55.000 0.00 0.00 0.00 3.51
697 716 2.094026 ACGAAACCACTATACGGGTTCC 60.094 50.000 8.14 0.00 45.83 3.62
762 784 4.308458 CCCCACGACCGCAGTCAA 62.308 66.667 0.20 0.00 43.73 3.18
883 907 1.330655 GGGGAGAGGAAGACGATGCA 61.331 60.000 0.00 0.00 0.00 3.96
934 959 3.973267 GAGAGAGACGGTGCGGTGC 62.973 68.421 0.00 0.00 0.00 5.01
949 974 2.764128 GATGCGGTGGGGGAGAGA 60.764 66.667 0.00 0.00 0.00 3.10
1031 1056 1.749334 CTCCACTACATCTCCGGCCC 61.749 65.000 0.00 0.00 0.00 5.80
1061 1086 2.264480 CTTCATCCGCGGTCACCA 59.736 61.111 27.15 5.24 0.00 4.17
1127 1152 0.467384 CTCCTTCTCCACATCCGCAT 59.533 55.000 0.00 0.00 0.00 4.73
1196 1222 4.873129 CGGGATGGACTGCGTCGG 62.873 72.222 0.00 0.00 32.65 4.79
1333 1359 6.469410 TCGTCAAACCAAATACTCTAACCAT 58.531 36.000 0.00 0.00 0.00 3.55
1345 1371 1.726533 GGCCCGTTCGTCAAACCAAA 61.727 55.000 0.00 0.00 34.11 3.28
1357 1383 0.112412 ACAGAAAATCCTGGCCCGTT 59.888 50.000 0.00 0.00 38.44 4.44
1359 1385 1.949525 CATACAGAAAATCCTGGCCCG 59.050 52.381 0.00 0.00 38.44 6.13
1388 1420 4.539596 AAACCCTAGTACAAAAACCCCA 57.460 40.909 0.00 0.00 0.00 4.96
1453 1486 4.460731 TGAAGCACATAGATCCCTATCTCG 59.539 45.833 0.00 0.00 41.71 4.04
1467 1500 3.678289 TCTGTGTAGCATTGAAGCACAT 58.322 40.909 0.00 0.00 39.02 3.21
1520 1553 8.760569 GCATTAAAAACAAATCTCCTTTTCGAA 58.239 29.630 0.00 0.00 0.00 3.71
1521 1554 8.141268 AGCATTAAAAACAAATCTCCTTTTCGA 58.859 29.630 0.00 0.00 0.00 3.71
1522 1555 8.298030 AGCATTAAAAACAAATCTCCTTTTCG 57.702 30.769 0.00 0.00 0.00 3.46
1525 1558 9.476202 GTGTAGCATTAAAAACAAATCTCCTTT 57.524 29.630 0.00 0.00 0.00 3.11
1526 1559 8.637986 TGTGTAGCATTAAAAACAAATCTCCTT 58.362 29.630 0.00 0.00 0.00 3.36
1527 1560 8.177119 TGTGTAGCATTAAAAACAAATCTCCT 57.823 30.769 0.00 0.00 0.00 3.69
1528 1561 8.296713 TCTGTGTAGCATTAAAAACAAATCTCC 58.703 33.333 0.00 0.00 0.00 3.71
1529 1562 9.846248 ATCTGTGTAGCATTAAAAACAAATCTC 57.154 29.630 0.00 0.00 0.00 2.75
1619 2262 3.091545 ACCCCAATCTGTGTAGCATTTG 58.908 45.455 0.00 0.00 0.00 2.32
1724 2367 9.926751 CACATTGAACAACAGAGCTAATATAAG 57.073 33.333 0.00 0.00 0.00 1.73
1896 2540 2.224892 GGTCCAGCTTCCTCTTTTTCCT 60.225 50.000 0.00 0.00 0.00 3.36
1938 2583 3.314357 TCGTCACTATACCTTGGATCGTG 59.686 47.826 0.00 0.00 0.00 4.35
1961 2606 8.001875 TCAAGTAGGCTTATCTCATACTCTTCT 58.998 37.037 0.00 0.00 32.87 2.85
2144 2794 2.781667 AGTAATCATCTCCCTTGGCCT 58.218 47.619 3.32 0.00 0.00 5.19
2184 2834 2.937873 GCAGTAGGGACAACGCCAAATA 60.938 50.000 0.00 0.00 0.00 1.40
2193 2843 1.057275 TGGTGGTGCAGTAGGGACAA 61.057 55.000 0.00 0.00 40.06 3.18
2196 2846 2.066340 CTTGGTGGTGCAGTAGGGA 58.934 57.895 0.00 0.00 0.00 4.20
2270 2920 1.040646 GTAGTCCTCGCCATGGATGA 58.959 55.000 18.40 11.57 35.87 2.92
2316 2967 1.089123 AGGGGAGTCAGGACTTCTCT 58.911 55.000 4.19 4.19 42.93 3.10
2336 2989 2.577563 ACATCATCACATCACTTGGGGA 59.422 45.455 0.00 0.00 0.00 4.81
2337 2990 2.686405 CACATCATCACATCACTTGGGG 59.314 50.000 0.00 0.00 0.00 4.96
2386 3047 2.358898 ACATCCAGTTCACACACAAAGC 59.641 45.455 0.00 0.00 0.00 3.51
2412 3073 7.017551 ACACATCATAGTACCATACCATCCATT 59.982 37.037 0.00 0.00 0.00 3.16
2532 3197 2.481276 GCATGTGTGATCATTGCAGCAT 60.481 45.455 14.30 6.23 36.36 3.79
2759 3430 6.316140 TGAGTTCAAAACATCGGATAATGAGG 59.684 38.462 0.00 0.00 0.00 3.86
2783 3455 7.254455 GGAATTTATACTGTCCTGTCGAATGTG 60.254 40.741 0.00 0.00 0.00 3.21
2849 3538 3.531934 TGCACACATGATCTCCTACAG 57.468 47.619 0.00 0.00 0.00 2.74
2903 3592 4.618489 CGGAGCACATTTCTCAAATTCAAC 59.382 41.667 0.00 0.00 32.38 3.18
3010 3701 8.383318 ACACTATATAGATTGCATTGGTGTTC 57.617 34.615 16.79 0.00 31.48 3.18
3244 3958 7.440523 ACAACATTTCATAGAGTTCAAGGAC 57.559 36.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.