Multiple sequence alignment - TraesCS7D01G245800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G245800 chr7D 100.000 4821 0 0 1 4821 214775448 214770628 0.000000e+00 8903
1 TraesCS7D01G245800 chr7D 91.203 773 42 9 4074 4821 465829727 465830498 0.000000e+00 1027
2 TraesCS7D01G245800 chr7D 95.627 343 13 2 1 341 163259287 163258945 2.540000e-152 549
3 TraesCS7D01G245800 chr7D 92.950 383 8 6 1 365 511148952 511149333 1.530000e-149 540
4 TraesCS7D01G245800 chr7D 90.863 197 5 8 4073 4257 219288438 219288633 8.010000e-63 252
5 TraesCS7D01G245800 chr7D 89.231 195 13 7 4070 4259 214764735 214764926 2.240000e-58 237
6 TraesCS7D01G245800 chr7D 79.330 179 26 7 192 366 469888015 469888186 1.100000e-21 115
7 TraesCS7D01G245800 chr7A 96.953 3643 84 8 454 4077 227390883 227387249 0.000000e+00 6087
8 TraesCS7D01G245800 chr7B 96.107 2389 83 3 388 2768 186273928 186276314 0.000000e+00 3888
9 TraesCS7D01G245800 chr7B 96.271 1314 33 5 2775 4075 186276366 186277676 0.000000e+00 2141
10 TraesCS7D01G245800 chr3D 92.199 782 26 9 4075 4821 460895118 460895899 0.000000e+00 1074
11 TraesCS7D01G245800 chr3D 91.138 756 27 15 4075 4791 170566969 170567723 0.000000e+00 989
12 TraesCS7D01G245800 chr3D 94.718 284 15 0 9 292 464034861 464034578 4.430000e-120 442
13 TraesCS7D01G245800 chr6D 91.720 785 26 10 4076 4821 113908818 113908034 0.000000e+00 1053
14 TraesCS7D01G245800 chr6D 94.370 373 19 2 1 372 396977960 396977589 5.410000e-159 571
15 TraesCS7D01G245800 chr2D 91.602 774 22 18 4076 4821 643058659 643057901 0.000000e+00 1029
16 TraesCS7D01G245800 chr2D 89.227 789 21 16 4072 4821 648104297 648105060 0.000000e+00 928
17 TraesCS7D01G245800 chr2D 90.374 696 28 13 4076 4732 431917085 431916390 0.000000e+00 878
18 TraesCS7D01G245800 chr2D 91.500 200 6 4 4073 4261 643052217 643052416 1.030000e-66 265
19 TraesCS7D01G245800 chr2D 90.452 199 8 4 4074 4261 648110770 648110572 8.010000e-63 252
20 TraesCS7D01G245800 chr2A 90.501 779 34 18 4079 4821 84227924 84227150 0.000000e+00 992
21 TraesCS7D01G245800 chr2A 96.347 438 16 0 4384 4821 766613176 766613613 0.000000e+00 721
22 TraesCS7D01G245800 chr2A 93.731 335 8 7 4075 4397 766612825 766613158 1.560000e-134 490
23 TraesCS7D01G245800 chr2A 90.116 172 6 4 4075 4235 766619705 766619534 3.780000e-51 213
24 TraesCS7D01G245800 chr2A 86.911 191 18 6 4072 4259 84206498 84206684 1.760000e-49 207
25 TraesCS7D01G245800 chr5D 90.343 787 20 18 4075 4821 367807989 367807219 0.000000e+00 981
26 TraesCS7D01G245800 chr5D 90.355 197 8 4 4076 4261 367799727 367799923 1.040000e-61 248
27 TraesCS7D01G245800 chr2B 89.427 785 44 6 4076 4821 1910441 1909657 0.000000e+00 953
28 TraesCS7D01G245800 chr2B 91.967 361 27 1 8 366 109195930 109195570 5.570000e-139 505
29 TraesCS7D01G245800 chr1B 88.703 779 54 5 4074 4818 688240269 688241047 0.000000e+00 920
30 TraesCS7D01G245800 chr4A 95.392 434 18 1 4390 4821 485013301 485012868 0.000000e+00 689
31 TraesCS7D01G245800 chr3B 92.098 367 28 1 1 366 814638236 814638602 2.570000e-142 516
32 TraesCS7D01G245800 chr5B 91.870 369 28 2 1 367 214439957 214440325 9.250000e-142 514
33 TraesCS7D01G245800 chr5B 88.043 368 42 2 3 368 416015671 416015304 7.410000e-118 435
34 TraesCS7D01G245800 chr5B 85.479 365 49 3 4 366 658616831 658616469 1.270000e-100 377


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G245800 chr7D 214770628 214775448 4820 True 8903.0 8903 100.000 1 4821 1 chr7D.!!$R2 4820
1 TraesCS7D01G245800 chr7D 465829727 465830498 771 False 1027.0 1027 91.203 4074 4821 1 chr7D.!!$F3 747
2 TraesCS7D01G245800 chr7A 227387249 227390883 3634 True 6087.0 6087 96.953 454 4077 1 chr7A.!!$R1 3623
3 TraesCS7D01G245800 chr7B 186273928 186277676 3748 False 3014.5 3888 96.189 388 4075 2 chr7B.!!$F1 3687
4 TraesCS7D01G245800 chr3D 460895118 460895899 781 False 1074.0 1074 92.199 4075 4821 1 chr3D.!!$F2 746
5 TraesCS7D01G245800 chr3D 170566969 170567723 754 False 989.0 989 91.138 4075 4791 1 chr3D.!!$F1 716
6 TraesCS7D01G245800 chr6D 113908034 113908818 784 True 1053.0 1053 91.720 4076 4821 1 chr6D.!!$R1 745
7 TraesCS7D01G245800 chr2D 643057901 643058659 758 True 1029.0 1029 91.602 4076 4821 1 chr2D.!!$R2 745
8 TraesCS7D01G245800 chr2D 648104297 648105060 763 False 928.0 928 89.227 4072 4821 1 chr2D.!!$F2 749
9 TraesCS7D01G245800 chr2D 431916390 431917085 695 True 878.0 878 90.374 4076 4732 1 chr2D.!!$R1 656
10 TraesCS7D01G245800 chr2A 84227150 84227924 774 True 992.0 992 90.501 4079 4821 1 chr2A.!!$R1 742
11 TraesCS7D01G245800 chr2A 766612825 766613613 788 False 605.5 721 95.039 4075 4821 2 chr2A.!!$F2 746
12 TraesCS7D01G245800 chr5D 367807219 367807989 770 True 981.0 981 90.343 4075 4821 1 chr5D.!!$R1 746
13 TraesCS7D01G245800 chr2B 1909657 1910441 784 True 953.0 953 89.427 4076 4821 1 chr2B.!!$R1 745
14 TraesCS7D01G245800 chr1B 688240269 688241047 778 False 920.0 920 88.703 4074 4818 1 chr1B.!!$F1 744

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
299 300 0.026674 ATGTTCGCATTGATCGCACG 59.973 50.000 0.00 0.00 33.21 5.34 F
301 302 0.094558 GTTCGCATTGATCGCACGAA 59.905 50.000 0.00 8.12 40.12 3.85 F
358 359 0.098200 CGTCATTGGCGTACTCTCGA 59.902 55.000 1.71 0.00 0.00 4.04 F
556 557 0.944311 CTGTCACGCTAAAGCACCGT 60.944 55.000 2.44 0.00 42.21 4.83 F
781 783 1.351076 AAGTGGGCAGAAAAATGGGG 58.649 50.000 0.00 0.00 0.00 4.96 F
2400 2402 1.678627 CACATCTTCGTCGAGGGAGAT 59.321 52.381 20.76 20.76 0.00 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1618 1620 1.134670 CCTGTCTCCCGTTCATCCTTC 60.135 57.143 0.0 0.0 0.00 3.46 R
1777 1779 1.900351 CTCATCCTTCACCTCCGCA 59.100 57.895 0.0 0.0 0.00 5.69 R
2400 2402 0.694771 AGCCAGATTCCAAGTGCTCA 59.305 50.000 0.0 0.0 0.00 4.26 R
2483 2493 1.751563 GCCTATCTCCAGCTCACCC 59.248 63.158 0.0 0.0 0.00 4.61 R
2829 2884 0.533755 GCCGCTCTCCTGCACATAAT 60.534 55.000 0.0 0.0 0.00 1.28 R
4075 4143 1.130561 GTACCGCCAGTGCATTTTCTC 59.869 52.381 0.0 0.0 37.32 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.559502 CCGAATGGTGGCTAAGGG 57.440 61.111 0.00 0.00 0.00 3.95
20 21 1.823899 CCGAATGGTGGCTAAGGGC 60.824 63.158 0.00 0.00 40.90 5.19
21 22 1.077787 CGAATGGTGGCTAAGGGCA 60.078 57.895 0.00 0.00 45.89 5.36
27 28 3.003173 TGGCTAAGGGCACGAGCT 61.003 61.111 14.52 0.00 43.20 4.09
28 29 2.512515 GGCTAAGGGCACGAGCTG 60.513 66.667 14.52 0.00 44.01 4.24
29 30 2.512515 GCTAAGGGCACGAGCTGG 60.513 66.667 8.51 0.00 41.70 4.85
30 31 2.512515 CTAAGGGCACGAGCTGGC 60.513 66.667 4.48 0.00 45.01 4.85
31 32 3.003173 TAAGGGCACGAGCTGGCT 61.003 61.111 4.48 0.00 45.09 4.75
32 33 2.527951 CTAAGGGCACGAGCTGGCTT 62.528 60.000 4.48 0.00 45.09 4.35
33 34 2.124507 TAAGGGCACGAGCTGGCTTT 62.125 55.000 4.48 2.77 45.50 3.51
34 35 3.435186 GGGCACGAGCTGGCTTTC 61.435 66.667 4.48 0.00 45.09 2.62
35 36 2.669569 GGCACGAGCTGGCTTTCA 60.670 61.111 4.48 0.00 42.36 2.69
36 37 2.260869 GGCACGAGCTGGCTTTCAA 61.261 57.895 4.48 0.00 42.36 2.69
37 38 1.208614 GCACGAGCTGGCTTTCAAG 59.791 57.895 0.00 0.00 37.91 3.02
38 39 1.871772 CACGAGCTGGCTTTCAAGG 59.128 57.895 0.00 0.00 0.00 3.61
39 40 1.302832 ACGAGCTGGCTTTCAAGGG 60.303 57.895 0.00 0.00 0.00 3.95
40 41 1.003355 CGAGCTGGCTTTCAAGGGA 60.003 57.895 0.00 0.00 0.00 4.20
41 42 0.606401 CGAGCTGGCTTTCAAGGGAA 60.606 55.000 0.00 0.00 0.00 3.97
42 43 1.620822 GAGCTGGCTTTCAAGGGAAA 58.379 50.000 0.00 0.00 40.60 3.13
43 44 1.270826 GAGCTGGCTTTCAAGGGAAAC 59.729 52.381 0.00 0.00 38.07 2.78
44 45 1.039856 GCTGGCTTTCAAGGGAAACA 58.960 50.000 0.00 0.00 38.07 2.83
45 46 1.269778 GCTGGCTTTCAAGGGAAACAC 60.270 52.381 0.00 0.00 38.07 3.32
46 47 2.031120 CTGGCTTTCAAGGGAAACACA 58.969 47.619 0.00 0.00 38.07 3.72
47 48 2.430332 CTGGCTTTCAAGGGAAACACAA 59.570 45.455 0.00 0.00 38.07 3.33
48 49 2.430332 TGGCTTTCAAGGGAAACACAAG 59.570 45.455 0.00 0.00 38.07 3.16
49 50 2.430694 GGCTTTCAAGGGAAACACAAGT 59.569 45.455 0.00 0.00 38.07 3.16
50 51 3.447742 GCTTTCAAGGGAAACACAAGTG 58.552 45.455 0.00 0.00 38.07 3.16
51 52 3.130340 GCTTTCAAGGGAAACACAAGTGA 59.870 43.478 7.28 0.00 38.07 3.41
52 53 4.734695 GCTTTCAAGGGAAACACAAGTGAG 60.735 45.833 7.28 0.00 38.07 3.51
53 54 2.930950 TCAAGGGAAACACAAGTGAGG 58.069 47.619 7.28 0.00 0.00 3.86
54 55 1.338020 CAAGGGAAACACAAGTGAGGC 59.662 52.381 7.28 0.00 0.00 4.70
55 56 0.846693 AGGGAAACACAAGTGAGGCT 59.153 50.000 7.28 0.00 0.00 4.58
56 57 1.215423 AGGGAAACACAAGTGAGGCTT 59.785 47.619 7.28 0.00 38.08 4.35
57 58 2.031870 GGGAAACACAAGTGAGGCTTT 58.968 47.619 7.28 0.00 34.69 3.51
58 59 2.223805 GGGAAACACAAGTGAGGCTTTG 60.224 50.000 7.28 0.00 34.69 2.77
59 60 2.687935 GGAAACACAAGTGAGGCTTTGA 59.312 45.455 7.28 0.00 34.69 2.69
60 61 3.319122 GGAAACACAAGTGAGGCTTTGAT 59.681 43.478 7.28 0.00 34.69 2.57
61 62 4.202151 GGAAACACAAGTGAGGCTTTGATT 60.202 41.667 7.28 0.00 34.69 2.57
62 63 4.574599 AACACAAGTGAGGCTTTGATTC 57.425 40.909 7.28 0.00 34.69 2.52
63 64 3.554934 ACACAAGTGAGGCTTTGATTCA 58.445 40.909 7.28 0.00 34.69 2.57
64 65 3.567164 ACACAAGTGAGGCTTTGATTCAG 59.433 43.478 7.28 0.00 34.69 3.02
65 66 3.567164 CACAAGTGAGGCTTTGATTCAGT 59.433 43.478 4.50 0.00 34.69 3.41
66 67 3.817647 ACAAGTGAGGCTTTGATTCAGTC 59.182 43.478 4.50 0.00 34.69 3.51
67 68 2.693069 AGTGAGGCTTTGATTCAGTCG 58.307 47.619 0.00 0.00 0.00 4.18
68 69 2.037772 AGTGAGGCTTTGATTCAGTCGT 59.962 45.455 0.00 0.00 0.00 4.34
69 70 2.413453 GTGAGGCTTTGATTCAGTCGTC 59.587 50.000 0.00 0.00 0.00 4.20
70 71 2.037121 TGAGGCTTTGATTCAGTCGTCA 59.963 45.455 0.00 0.00 0.00 4.35
71 72 3.265791 GAGGCTTTGATTCAGTCGTCAT 58.734 45.455 0.00 0.00 0.00 3.06
72 73 3.679389 AGGCTTTGATTCAGTCGTCATT 58.321 40.909 0.00 0.00 0.00 2.57
73 74 3.438087 AGGCTTTGATTCAGTCGTCATTG 59.562 43.478 0.00 0.00 0.00 2.82
74 75 3.166657 GCTTTGATTCAGTCGTCATTGC 58.833 45.455 0.00 0.00 0.00 3.56
75 76 3.751621 CTTTGATTCAGTCGTCATTGCC 58.248 45.455 0.00 0.00 0.00 4.52
76 77 1.358877 TGATTCAGTCGTCATTGCCG 58.641 50.000 0.00 0.00 0.00 5.69
77 78 0.026803 GATTCAGTCGTCATTGCCGC 59.973 55.000 0.00 0.00 0.00 6.53
78 79 0.673333 ATTCAGTCGTCATTGCCGCA 60.673 50.000 0.00 0.00 0.00 5.69
79 80 1.291184 TTCAGTCGTCATTGCCGCAG 61.291 55.000 0.00 0.00 0.00 5.18
80 81 3.121030 AGTCGTCATTGCCGCAGC 61.121 61.111 0.00 0.00 40.48 5.25
81 82 3.121030 GTCGTCATTGCCGCAGCT 61.121 61.111 0.00 0.00 40.80 4.24
82 83 2.358615 TCGTCATTGCCGCAGCTT 60.359 55.556 0.00 0.00 40.80 3.74
83 84 1.079474 TCGTCATTGCCGCAGCTTA 60.079 52.632 0.00 0.00 40.80 3.09
84 85 0.672091 TCGTCATTGCCGCAGCTTAA 60.672 50.000 0.00 0.00 40.80 1.85
85 86 0.378257 CGTCATTGCCGCAGCTTAAT 59.622 50.000 0.00 0.00 40.80 1.40
86 87 1.202177 CGTCATTGCCGCAGCTTAATT 60.202 47.619 0.00 0.00 40.80 1.40
87 88 2.187707 GTCATTGCCGCAGCTTAATTG 58.812 47.619 0.00 0.00 40.80 2.32
88 89 1.818060 TCATTGCCGCAGCTTAATTGT 59.182 42.857 0.00 0.00 40.80 2.71
89 90 2.230992 TCATTGCCGCAGCTTAATTGTT 59.769 40.909 0.00 0.00 40.80 2.83
90 91 3.441922 TCATTGCCGCAGCTTAATTGTTA 59.558 39.130 0.00 0.00 40.80 2.41
91 92 4.097741 TCATTGCCGCAGCTTAATTGTTAT 59.902 37.500 0.00 0.00 40.80 1.89
92 93 5.298026 TCATTGCCGCAGCTTAATTGTTATA 59.702 36.000 0.00 0.00 40.80 0.98
93 94 4.811555 TGCCGCAGCTTAATTGTTATAG 57.188 40.909 0.00 0.00 40.80 1.31
94 95 4.447290 TGCCGCAGCTTAATTGTTATAGA 58.553 39.130 0.00 0.00 40.80 1.98
95 96 4.878971 TGCCGCAGCTTAATTGTTATAGAA 59.121 37.500 0.00 0.00 40.80 2.10
96 97 5.007626 TGCCGCAGCTTAATTGTTATAGAAG 59.992 40.000 0.00 0.00 40.80 2.85
97 98 5.444122 CCGCAGCTTAATTGTTATAGAAGC 58.556 41.667 0.00 0.00 42.25 3.86
98 99 5.007626 CCGCAGCTTAATTGTTATAGAAGCA 59.992 40.000 9.00 0.00 43.94 3.91
99 100 6.132056 CGCAGCTTAATTGTTATAGAAGCAG 58.868 40.000 9.00 3.13 43.94 4.24
100 101 6.018751 CGCAGCTTAATTGTTATAGAAGCAGA 60.019 38.462 9.00 0.00 43.94 4.26
101 102 7.351223 GCAGCTTAATTGTTATAGAAGCAGAG 58.649 38.462 9.00 1.48 43.94 3.35
102 103 7.519649 GCAGCTTAATTGTTATAGAAGCAGAGG 60.520 40.741 9.00 0.00 43.94 3.69
103 104 7.712639 CAGCTTAATTGTTATAGAAGCAGAGGA 59.287 37.037 9.00 0.00 43.94 3.71
104 105 8.267894 AGCTTAATTGTTATAGAAGCAGAGGAA 58.732 33.333 9.00 0.00 43.94 3.36
105 106 8.338986 GCTTAATTGTTATAGAAGCAGAGGAAC 58.661 37.037 2.69 0.00 41.69 3.62
106 107 6.910536 AATTGTTATAGAAGCAGAGGAACG 57.089 37.500 0.00 0.00 0.00 3.95
107 108 3.782046 TGTTATAGAAGCAGAGGAACGC 58.218 45.455 0.00 0.00 0.00 4.84
108 109 3.447586 TGTTATAGAAGCAGAGGAACGCT 59.552 43.478 0.00 0.00 40.82 5.07
109 110 4.643334 TGTTATAGAAGCAGAGGAACGCTA 59.357 41.667 0.00 0.00 35.27 4.26
110 111 5.126545 TGTTATAGAAGCAGAGGAACGCTAA 59.873 40.000 0.00 0.00 35.27 3.09
111 112 2.663826 AGAAGCAGAGGAACGCTAAG 57.336 50.000 0.00 0.00 35.27 2.18
112 113 1.205893 AGAAGCAGAGGAACGCTAAGG 59.794 52.381 0.00 0.00 35.27 2.69
113 114 0.977395 AAGCAGAGGAACGCTAAGGT 59.023 50.000 0.00 0.00 35.27 3.50
114 115 0.247736 AGCAGAGGAACGCTAAGGTG 59.752 55.000 0.00 0.00 35.27 4.00
115 116 0.037232 GCAGAGGAACGCTAAGGTGT 60.037 55.000 0.00 0.00 35.27 4.16
128 129 2.422591 GGTGTTCAACCGACCGGA 59.577 61.111 16.07 0.00 39.81 5.14
129 130 1.227615 GGTGTTCAACCGACCGGAA 60.228 57.895 16.07 0.00 39.81 4.30
130 131 1.501337 GGTGTTCAACCGACCGGAAC 61.501 60.000 16.07 9.66 39.81 3.62
131 132 0.810823 GTGTTCAACCGACCGGAACA 60.811 55.000 16.07 12.09 46.09 3.18
132 133 0.107800 TGTTCAACCGACCGGAACAA 60.108 50.000 16.07 1.44 45.51 2.83
133 134 0.584876 GTTCAACCGACCGGAACAAG 59.415 55.000 16.07 0.00 40.39 3.16
134 135 0.178533 TTCAACCGACCGGAACAAGT 59.821 50.000 16.07 0.00 38.96 3.16
135 136 0.249573 TCAACCGACCGGAACAAGTC 60.250 55.000 16.07 0.00 38.96 3.01
136 137 0.531090 CAACCGACCGGAACAAGTCA 60.531 55.000 16.07 0.00 38.96 3.41
137 138 0.178533 AACCGACCGGAACAAGTCAA 59.821 50.000 16.07 0.00 38.96 3.18
138 139 0.249741 ACCGACCGGAACAAGTCAAG 60.250 55.000 16.07 0.00 38.96 3.02
139 140 0.949105 CCGACCGGAACAAGTCAAGG 60.949 60.000 9.46 0.00 37.50 3.61
140 141 0.032952 CGACCGGAACAAGTCAAGGA 59.967 55.000 9.46 0.00 31.61 3.36
141 142 1.509703 GACCGGAACAAGTCAAGGAC 58.490 55.000 9.46 0.00 32.32 3.85
142 143 1.070289 GACCGGAACAAGTCAAGGACT 59.930 52.381 9.46 0.00 45.64 3.85
143 144 1.202651 ACCGGAACAAGTCAAGGACTG 60.203 52.381 9.46 0.00 42.59 3.51
144 145 0.868406 CGGAACAAGTCAAGGACTGC 59.132 55.000 0.00 0.00 42.59 4.40
145 146 1.810031 CGGAACAAGTCAAGGACTGCA 60.810 52.381 0.00 0.00 42.59 4.41
146 147 2.297701 GGAACAAGTCAAGGACTGCAA 58.702 47.619 0.00 0.00 42.59 4.08
147 148 2.887152 GGAACAAGTCAAGGACTGCAAT 59.113 45.455 0.00 0.00 42.59 3.56
148 149 3.304928 GGAACAAGTCAAGGACTGCAATG 60.305 47.826 0.00 0.00 42.59 2.82
149 150 3.213206 ACAAGTCAAGGACTGCAATGA 57.787 42.857 0.00 0.00 42.59 2.57
150 151 3.144506 ACAAGTCAAGGACTGCAATGAG 58.855 45.455 0.00 0.00 42.59 2.90
151 152 3.144506 CAAGTCAAGGACTGCAATGAGT 58.855 45.455 0.00 0.00 42.59 3.41
152 153 3.498774 AGTCAAGGACTGCAATGAGTT 57.501 42.857 0.00 0.00 41.76 3.01
153 154 4.623932 AGTCAAGGACTGCAATGAGTTA 57.376 40.909 0.00 0.00 41.76 2.24
154 155 4.573900 AGTCAAGGACTGCAATGAGTTAG 58.426 43.478 0.00 0.00 41.76 2.34
155 156 3.126000 GTCAAGGACTGCAATGAGTTAGC 59.874 47.826 0.00 0.00 0.00 3.09
156 157 3.008375 TCAAGGACTGCAATGAGTTAGCT 59.992 43.478 0.00 0.00 0.00 3.32
157 158 4.222810 TCAAGGACTGCAATGAGTTAGCTA 59.777 41.667 0.00 0.00 0.00 3.32
158 159 4.399004 AGGACTGCAATGAGTTAGCTAG 57.601 45.455 0.00 0.00 0.00 3.42
159 160 4.026744 AGGACTGCAATGAGTTAGCTAGA 58.973 43.478 0.00 0.00 0.00 2.43
160 161 4.099266 AGGACTGCAATGAGTTAGCTAGAG 59.901 45.833 0.00 0.00 0.00 2.43
161 162 3.791245 ACTGCAATGAGTTAGCTAGAGC 58.209 45.455 0.00 0.00 42.49 4.09
162 163 3.129871 CTGCAATGAGTTAGCTAGAGCC 58.870 50.000 0.00 0.00 43.38 4.70
163 164 2.501316 TGCAATGAGTTAGCTAGAGCCA 59.499 45.455 0.00 0.00 43.38 4.75
164 165 3.135348 TGCAATGAGTTAGCTAGAGCCAT 59.865 43.478 0.00 0.00 43.38 4.40
165 166 3.745458 GCAATGAGTTAGCTAGAGCCATC 59.255 47.826 0.00 0.00 43.38 3.51
166 167 4.314121 CAATGAGTTAGCTAGAGCCATCC 58.686 47.826 0.00 0.00 43.38 3.51
167 168 3.320610 TGAGTTAGCTAGAGCCATCCT 57.679 47.619 0.00 0.00 43.38 3.24
168 169 3.647636 TGAGTTAGCTAGAGCCATCCTT 58.352 45.455 0.00 0.00 43.38 3.36
169 170 3.386078 TGAGTTAGCTAGAGCCATCCTTG 59.614 47.826 0.00 0.00 43.38 3.61
170 171 3.639094 GAGTTAGCTAGAGCCATCCTTGA 59.361 47.826 0.00 0.00 43.38 3.02
171 172 3.386402 AGTTAGCTAGAGCCATCCTTGAC 59.614 47.826 0.00 0.00 43.38 3.18
172 173 0.749649 AGCTAGAGCCATCCTTGACG 59.250 55.000 0.00 0.00 43.38 4.35
173 174 0.747255 GCTAGAGCCATCCTTGACGA 59.253 55.000 0.00 0.00 34.31 4.20
174 175 1.137086 GCTAGAGCCATCCTTGACGAA 59.863 52.381 0.00 0.00 34.31 3.85
175 176 2.418746 GCTAGAGCCATCCTTGACGAAA 60.419 50.000 0.00 0.00 34.31 3.46
176 177 3.742640 GCTAGAGCCATCCTTGACGAAAT 60.743 47.826 0.00 0.00 34.31 2.17
177 178 3.356529 AGAGCCATCCTTGACGAAATT 57.643 42.857 0.00 0.00 0.00 1.82
178 179 3.274288 AGAGCCATCCTTGACGAAATTC 58.726 45.455 0.00 0.00 0.00 2.17
179 180 3.009723 GAGCCATCCTTGACGAAATTCA 58.990 45.455 0.00 0.00 0.00 2.57
180 181 3.624777 AGCCATCCTTGACGAAATTCAT 58.375 40.909 0.00 0.00 0.00 2.57
181 182 3.379372 AGCCATCCTTGACGAAATTCATG 59.621 43.478 0.00 0.00 0.00 3.07
182 183 3.378112 GCCATCCTTGACGAAATTCATGA 59.622 43.478 0.00 0.00 0.00 3.07
183 184 4.731773 GCCATCCTTGACGAAATTCATGAC 60.732 45.833 0.00 0.00 0.00 3.06
184 185 4.637534 CCATCCTTGACGAAATTCATGACT 59.362 41.667 0.00 0.00 0.00 3.41
185 186 5.448225 CCATCCTTGACGAAATTCATGACTG 60.448 44.000 0.00 0.00 0.00 3.51
186 187 4.002982 TCCTTGACGAAATTCATGACTGG 58.997 43.478 0.00 0.00 0.00 4.00
187 188 3.426695 CCTTGACGAAATTCATGACTGGC 60.427 47.826 0.00 0.00 0.00 4.85
188 189 2.777094 TGACGAAATTCATGACTGGCA 58.223 42.857 0.00 0.00 0.00 4.92
189 190 2.483877 TGACGAAATTCATGACTGGCAC 59.516 45.455 0.00 0.00 0.00 5.01
190 191 2.483877 GACGAAATTCATGACTGGCACA 59.516 45.455 0.00 0.00 0.00 4.57
203 204 3.972227 GCACAGTGCAGGTGTAGG 58.028 61.111 21.22 2.22 44.26 3.18
204 205 1.071471 GCACAGTGCAGGTGTAGGT 59.929 57.895 21.22 0.00 44.26 3.08
205 206 1.230635 GCACAGTGCAGGTGTAGGTG 61.231 60.000 21.22 6.22 44.26 4.00
206 207 0.106708 CACAGTGCAGGTGTAGGTGT 59.893 55.000 9.70 0.00 0.00 4.16
207 208 0.106708 ACAGTGCAGGTGTAGGTGTG 59.893 55.000 0.00 0.00 0.00 3.82
208 209 0.603707 CAGTGCAGGTGTAGGTGTGG 60.604 60.000 0.00 0.00 0.00 4.17
209 210 1.302511 GTGCAGGTGTAGGTGTGGG 60.303 63.158 0.00 0.00 0.00 4.61
210 211 1.768482 TGCAGGTGTAGGTGTGGGT 60.768 57.895 0.00 0.00 0.00 4.51
211 212 1.302511 GCAGGTGTAGGTGTGGGTG 60.303 63.158 0.00 0.00 0.00 4.61
212 213 1.374947 CAGGTGTAGGTGTGGGTGG 59.625 63.158 0.00 0.00 0.00 4.61
213 214 1.125093 CAGGTGTAGGTGTGGGTGGA 61.125 60.000 0.00 0.00 0.00 4.02
214 215 0.178873 AGGTGTAGGTGTGGGTGGAT 60.179 55.000 0.00 0.00 0.00 3.41
215 216 0.696501 GGTGTAGGTGTGGGTGGATT 59.303 55.000 0.00 0.00 0.00 3.01
216 217 1.910671 GGTGTAGGTGTGGGTGGATTA 59.089 52.381 0.00 0.00 0.00 1.75
217 218 2.093128 GGTGTAGGTGTGGGTGGATTAG 60.093 54.545 0.00 0.00 0.00 1.73
218 219 2.835764 GTGTAGGTGTGGGTGGATTAGA 59.164 50.000 0.00 0.00 0.00 2.10
219 220 3.454812 GTGTAGGTGTGGGTGGATTAGAT 59.545 47.826 0.00 0.00 0.00 1.98
220 221 3.709653 TGTAGGTGTGGGTGGATTAGATC 59.290 47.826 0.00 0.00 0.00 2.75
221 222 2.845659 AGGTGTGGGTGGATTAGATCA 58.154 47.619 0.00 0.00 0.00 2.92
222 223 3.397527 AGGTGTGGGTGGATTAGATCAT 58.602 45.455 0.00 0.00 0.00 2.45
223 224 3.788142 AGGTGTGGGTGGATTAGATCATT 59.212 43.478 0.00 0.00 0.00 2.57
224 225 4.230502 AGGTGTGGGTGGATTAGATCATTT 59.769 41.667 0.00 0.00 0.00 2.32
225 226 4.956075 GGTGTGGGTGGATTAGATCATTTT 59.044 41.667 0.00 0.00 0.00 1.82
226 227 5.163519 GGTGTGGGTGGATTAGATCATTTTG 60.164 44.000 0.00 0.00 0.00 2.44
227 228 5.418840 GTGTGGGTGGATTAGATCATTTTGT 59.581 40.000 0.00 0.00 0.00 2.83
228 229 5.418524 TGTGGGTGGATTAGATCATTTTGTG 59.581 40.000 0.00 0.00 0.00 3.33
229 230 5.652014 GTGGGTGGATTAGATCATTTTGTGA 59.348 40.000 0.00 0.00 42.06 3.58
230 231 5.887598 TGGGTGGATTAGATCATTTTGTGAG 59.112 40.000 0.00 0.00 40.92 3.51
231 232 6.122277 GGGTGGATTAGATCATTTTGTGAGA 58.878 40.000 0.00 0.00 40.92 3.27
232 233 6.261826 GGGTGGATTAGATCATTTTGTGAGAG 59.738 42.308 0.00 0.00 40.92 3.20
233 234 7.050377 GGTGGATTAGATCATTTTGTGAGAGA 58.950 38.462 0.00 0.00 40.92 3.10
234 235 7.718753 GGTGGATTAGATCATTTTGTGAGAGAT 59.281 37.037 0.00 0.00 40.92 2.75
235 236 8.772705 GTGGATTAGATCATTTTGTGAGAGATC 58.227 37.037 0.00 0.00 40.92 2.75
236 237 8.488668 TGGATTAGATCATTTTGTGAGAGATCA 58.511 33.333 0.00 0.00 40.92 2.92
237 238 8.772705 GGATTAGATCATTTTGTGAGAGATCAC 58.227 37.037 0.00 1.44 40.92 3.06
238 239 7.761651 TTAGATCATTTTGTGAGAGATCACG 57.238 36.000 0.00 0.00 43.12 4.35
239 240 5.970592 AGATCATTTTGTGAGAGATCACGA 58.029 37.500 0.00 0.00 43.12 4.35
240 241 6.580788 AGATCATTTTGTGAGAGATCACGAT 58.419 36.000 0.00 0.80 43.12 3.73
241 242 7.046652 AGATCATTTTGTGAGAGATCACGATT 58.953 34.615 0.00 0.00 43.12 3.34
242 243 6.413018 TCATTTTGTGAGAGATCACGATTG 57.587 37.500 0.00 4.10 43.12 2.67
243 244 6.165577 TCATTTTGTGAGAGATCACGATTGA 58.834 36.000 0.00 6.00 43.12 2.57
244 245 6.820152 TCATTTTGTGAGAGATCACGATTGAT 59.180 34.615 0.00 0.00 43.12 2.57
245 246 7.010830 TCATTTTGTGAGAGATCACGATTGATC 59.989 37.037 7.72 7.72 43.64 2.92
256 257 5.661056 TCACGATTGATCTTCTTGTAGGT 57.339 39.130 0.00 0.00 0.00 3.08
257 258 5.410924 TCACGATTGATCTTCTTGTAGGTG 58.589 41.667 0.00 0.00 0.00 4.00
258 259 5.047306 TCACGATTGATCTTCTTGTAGGTGT 60.047 40.000 0.00 0.00 0.00 4.16
259 260 5.062683 CACGATTGATCTTCTTGTAGGTGTG 59.937 44.000 0.00 0.00 0.00 3.82
260 261 5.171476 CGATTGATCTTCTTGTAGGTGTGT 58.829 41.667 0.00 0.00 0.00 3.72
261 262 5.062683 CGATTGATCTTCTTGTAGGTGTGTG 59.937 44.000 0.00 0.00 0.00 3.82
262 263 4.955811 TGATCTTCTTGTAGGTGTGTGT 57.044 40.909 0.00 0.00 0.00 3.72
263 264 4.631131 TGATCTTCTTGTAGGTGTGTGTG 58.369 43.478 0.00 0.00 0.00 3.82
264 265 3.469008 TCTTCTTGTAGGTGTGTGTGG 57.531 47.619 0.00 0.00 0.00 4.17
265 266 2.104111 TCTTCTTGTAGGTGTGTGTGGG 59.896 50.000 0.00 0.00 0.00 4.61
266 267 1.502690 TCTTGTAGGTGTGTGTGGGT 58.497 50.000 0.00 0.00 0.00 4.51
267 268 1.140052 TCTTGTAGGTGTGTGTGGGTG 59.860 52.381 0.00 0.00 0.00 4.61
268 269 0.464735 TTGTAGGTGTGTGTGGGTGC 60.465 55.000 0.00 0.00 0.00 5.01
269 270 1.341913 TGTAGGTGTGTGTGGGTGCT 61.342 55.000 0.00 0.00 0.00 4.40
270 271 0.602905 GTAGGTGTGTGTGGGTGCTC 60.603 60.000 0.00 0.00 0.00 4.26
271 272 2.094757 TAGGTGTGTGTGGGTGCTCG 62.095 60.000 0.00 0.00 0.00 5.03
272 273 2.972505 GTGTGTGTGGGTGCTCGG 60.973 66.667 0.00 0.00 0.00 4.63
273 274 4.248842 TGTGTGTGGGTGCTCGGG 62.249 66.667 0.00 0.00 0.00 5.14
274 275 4.250305 GTGTGTGGGTGCTCGGGT 62.250 66.667 0.00 0.00 0.00 5.28
275 276 4.248842 TGTGTGGGTGCTCGGGTG 62.249 66.667 0.00 0.00 0.00 4.61
276 277 3.936203 GTGTGGGTGCTCGGGTGA 61.936 66.667 0.00 0.00 0.00 4.02
277 278 2.927856 TGTGGGTGCTCGGGTGAT 60.928 61.111 0.00 0.00 0.00 3.06
278 279 2.125106 GTGGGTGCTCGGGTGATC 60.125 66.667 0.00 0.00 0.00 2.92
279 280 3.770040 TGGGTGCTCGGGTGATCG 61.770 66.667 0.00 0.00 0.00 3.69
280 281 3.458163 GGGTGCTCGGGTGATCGA 61.458 66.667 0.00 0.00 37.60 3.59
281 282 2.797278 GGGTGCTCGGGTGATCGAT 61.797 63.158 0.00 0.00 38.55 3.59
282 283 1.592669 GGTGCTCGGGTGATCGATG 60.593 63.158 0.54 0.00 38.55 3.84
283 284 1.141881 GTGCTCGGGTGATCGATGT 59.858 57.895 0.54 0.00 38.55 3.06
284 285 0.460284 GTGCTCGGGTGATCGATGTT 60.460 55.000 0.54 0.00 38.55 2.71
285 286 0.179111 TGCTCGGGTGATCGATGTTC 60.179 55.000 0.54 0.00 38.55 3.18
286 287 1.209275 GCTCGGGTGATCGATGTTCG 61.209 60.000 0.54 1.53 42.10 3.95
287 288 1.209275 CTCGGGTGATCGATGTTCGC 61.209 60.000 0.54 0.00 40.21 4.70
288 289 1.518352 CGGGTGATCGATGTTCGCA 60.518 57.895 0.54 0.00 40.21 5.10
289 290 0.875908 CGGGTGATCGATGTTCGCAT 60.876 55.000 0.54 0.00 40.21 4.73
290 291 1.299541 GGGTGATCGATGTTCGCATT 58.700 50.000 0.54 0.00 40.21 3.56
291 292 1.003545 GGGTGATCGATGTTCGCATTG 60.004 52.381 0.54 0.00 40.21 2.82
296 297 0.576798 TCGATGTTCGCATTGATCGC 59.423 50.000 0.00 0.00 41.71 4.58
297 298 0.301388 CGATGTTCGCATTGATCGCA 59.699 50.000 0.00 0.00 40.63 5.10
298 299 1.734885 GATGTTCGCATTGATCGCAC 58.265 50.000 0.00 0.00 38.08 5.34
299 300 0.026674 ATGTTCGCATTGATCGCACG 59.973 50.000 0.00 0.00 33.21 5.34
300 301 1.011451 TGTTCGCATTGATCGCACGA 61.011 50.000 0.00 0.00 0.00 4.35
301 302 0.094558 GTTCGCATTGATCGCACGAA 59.905 50.000 0.00 8.12 40.12 3.85
302 303 1.006086 TTCGCATTGATCGCACGAAT 58.994 45.000 0.00 0.00 37.78 3.34
303 304 0.576798 TCGCATTGATCGCACGAATC 59.423 50.000 0.00 0.00 0.00 2.52
304 305 0.578683 CGCATTGATCGCACGAATCT 59.421 50.000 0.00 0.00 0.00 2.40
305 306 1.004610 CGCATTGATCGCACGAATCTT 60.005 47.619 0.00 0.00 0.00 2.40
306 307 2.369600 GCATTGATCGCACGAATCTTG 58.630 47.619 0.00 0.00 0.00 3.02
307 308 2.223112 GCATTGATCGCACGAATCTTGT 60.223 45.455 0.00 0.00 0.00 3.16
308 309 3.001228 GCATTGATCGCACGAATCTTGTA 59.999 43.478 0.00 0.00 0.00 2.41
309 310 4.494035 GCATTGATCGCACGAATCTTGTAA 60.494 41.667 0.00 0.00 0.00 2.41
310 311 5.741425 CATTGATCGCACGAATCTTGTAAT 58.259 37.500 0.00 0.00 0.00 1.89
311 312 5.794687 TTGATCGCACGAATCTTGTAATT 57.205 34.783 0.00 0.00 0.00 1.40
312 313 5.794687 TGATCGCACGAATCTTGTAATTT 57.205 34.783 0.00 0.00 0.00 1.82
313 314 6.176975 TGATCGCACGAATCTTGTAATTTT 57.823 33.333 0.00 0.00 0.00 1.82
314 315 6.607689 TGATCGCACGAATCTTGTAATTTTT 58.392 32.000 0.00 0.00 0.00 1.94
340 341 9.991906 TTCTCCCTTCTATAAAAATATGGTACG 57.008 33.333 0.00 0.00 0.00 3.67
341 342 9.151177 TCTCCCTTCTATAAAAATATGGTACGT 57.849 33.333 0.00 0.00 0.00 3.57
342 343 9.420551 CTCCCTTCTATAAAAATATGGTACGTC 57.579 37.037 0.00 0.00 0.00 4.34
343 344 8.926374 TCCCTTCTATAAAAATATGGTACGTCA 58.074 33.333 0.00 0.00 0.00 4.35
344 345 9.720769 CCCTTCTATAAAAATATGGTACGTCAT 57.279 33.333 0.00 0.00 0.00 3.06
348 349 8.995220 TCTATAAAAATATGGTACGTCATTGGC 58.005 33.333 0.00 0.00 0.00 4.52
349 350 4.545823 AAAATATGGTACGTCATTGGCG 57.454 40.909 9.48 9.48 0.00 5.69
350 351 2.902705 ATATGGTACGTCATTGGCGT 57.097 45.000 21.05 21.05 45.11 5.68
351 352 4.325028 AATATGGTACGTCATTGGCGTA 57.675 40.909 18.80 18.80 42.85 4.42
356 357 2.838386 TACGTCATTGGCGTACTCTC 57.162 50.000 18.80 0.00 42.85 3.20
357 358 0.179171 ACGTCATTGGCGTACTCTCG 60.179 55.000 15.69 0.00 41.06 4.04
358 359 0.098200 CGTCATTGGCGTACTCTCGA 59.902 55.000 1.71 0.00 0.00 4.04
359 360 1.466866 CGTCATTGGCGTACTCTCGAA 60.467 52.381 1.71 0.00 0.00 3.71
360 361 2.602878 GTCATTGGCGTACTCTCGAAA 58.397 47.619 0.00 0.00 0.00 3.46
361 362 2.991190 GTCATTGGCGTACTCTCGAAAA 59.009 45.455 0.00 0.00 0.00 2.29
362 363 3.430895 GTCATTGGCGTACTCTCGAAAAA 59.569 43.478 0.00 0.00 0.00 1.94
381 382 3.897141 AAAAAGACTTCCCCGCAAAAA 57.103 38.095 0.00 0.00 0.00 1.94
412 413 4.357996 CCGTAAGACCGTAATCTTTCTCC 58.642 47.826 0.00 0.00 39.65 3.71
413 414 4.097589 CCGTAAGACCGTAATCTTTCTCCT 59.902 45.833 0.00 0.00 39.65 3.69
424 425 7.650104 CCGTAATCTTTCTCCTTAGATGAAGAC 59.350 40.741 0.00 0.00 37.33 3.01
439 440 6.529220 AGATGAAGACTGCAAGAGTTAAAGT 58.471 36.000 0.00 0.00 37.43 2.66
452 453 9.000486 GCAAGAGTTAAAGTTAAGAATAGTGGT 58.000 33.333 0.00 0.00 0.00 4.16
514 515 1.658596 TGTCAGCGCGCACTTTATTAG 59.341 47.619 35.10 10.68 0.00 1.73
556 557 0.944311 CTGTCACGCTAAAGCACCGT 60.944 55.000 2.44 0.00 42.21 4.83
740 741 5.007626 CGATGCTTCCATTTCCGAAGATTTA 59.992 40.000 1.84 0.00 39.29 1.40
781 783 1.351076 AAGTGGGCAGAAAAATGGGG 58.649 50.000 0.00 0.00 0.00 4.96
1236 1238 4.052229 CGCCTCCTTCACCGTCGT 62.052 66.667 0.00 0.00 0.00 4.34
1287 1289 2.613506 GGAACCTGACCCAAACGCG 61.614 63.158 3.53 3.53 0.00 6.01
2021 2023 4.214327 CGCTCCTCGCCTTCCTCC 62.214 72.222 0.00 0.00 34.21 4.30
2400 2402 1.678627 CACATCTTCGTCGAGGGAGAT 59.321 52.381 20.76 20.76 0.00 2.75
2460 2470 3.475774 GTACTGGCACGAACGCGG 61.476 66.667 12.47 0.00 43.17 6.46
2695 2705 2.608623 CCACAAGGAAAATGGGGAACT 58.391 47.619 0.00 0.00 44.53 3.01
2792 2847 4.603231 TCGTAAAATAATCGTTGGTGCC 57.397 40.909 0.00 0.00 0.00 5.01
2828 2883 0.321298 CTCACCGACCCACCGAAATT 60.321 55.000 0.00 0.00 0.00 1.82
2829 2884 0.975135 TCACCGACCCACCGAAATTA 59.025 50.000 0.00 0.00 0.00 1.40
2830 2885 1.555992 TCACCGACCCACCGAAATTAT 59.444 47.619 0.00 0.00 0.00 1.28
2971 3026 1.753463 AGCCTCCGAGTTCTACCGG 60.753 63.158 0.00 0.00 46.57 5.28
3100 3155 2.279073 CTCCAGAGGGACGGCCTA 59.721 66.667 7.57 0.00 38.64 3.93
3433 3488 1.594310 GAAGGCTTCGGAGAGTGCT 59.406 57.895 12.12 0.00 38.43 4.40
3940 4007 0.319900 CGCGATGGATGGGTTCTAGG 60.320 60.000 0.00 0.00 0.00 3.02
3962 4029 2.033372 GTTTTTCTTTTGGACGGGGGA 58.967 47.619 0.00 0.00 0.00 4.81
4132 4200 3.275617 AGCACACTTTGGTCACTGTAA 57.724 42.857 0.00 0.00 0.00 2.41
4167 4235 3.444916 CAATACGGTCACTCAATACGCT 58.555 45.455 0.00 0.00 0.00 5.07
4240 4318 0.462047 GTTGACCAATCCGAGGCGAT 60.462 55.000 0.00 0.00 0.00 4.58
4345 4425 2.044860 CGGCTTCGATCATAACGAGAC 58.955 52.381 0.00 0.00 40.72 3.36
4579 4711 3.281727 TTAGAGATGGGCATTGTGGAC 57.718 47.619 0.00 0.00 0.00 4.02
4689 4839 2.764010 GTTTTGGGTTTGGAGAAGGTGT 59.236 45.455 0.00 0.00 0.00 4.16
4772 4922 8.833493 GTTGGTTGTATAGGTGAATTACATACC 58.167 37.037 0.00 0.00 34.68 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.823899 GCCCTTAGCCACCATTCGG 60.824 63.158 0.00 0.00 34.69 4.30
3 4 1.077787 TGCCCTTAGCCACCATTCG 60.078 57.895 0.00 0.00 42.71 3.34
6 7 2.257409 CTCGTGCCCTTAGCCACCAT 62.257 60.000 0.00 0.00 42.71 3.55
8 9 2.125106 CTCGTGCCCTTAGCCACC 60.125 66.667 0.00 0.00 42.71 4.61
9 10 2.820037 GCTCGTGCCCTTAGCCAC 60.820 66.667 0.00 0.00 42.71 5.01
10 11 3.003173 AGCTCGTGCCCTTAGCCA 61.003 61.111 5.73 0.00 42.71 4.75
11 12 2.512515 CAGCTCGTGCCCTTAGCC 60.513 66.667 5.73 0.00 42.71 3.93
12 13 2.512515 CCAGCTCGTGCCCTTAGC 60.513 66.667 5.73 0.00 40.80 3.09
13 14 2.512515 GCCAGCTCGTGCCCTTAG 60.513 66.667 5.73 0.00 40.80 2.18
14 15 2.124507 AAAGCCAGCTCGTGCCCTTA 62.125 55.000 5.73 0.00 40.80 2.69
15 16 3.497884 AAAGCCAGCTCGTGCCCTT 62.498 57.895 5.73 4.04 40.80 3.95
16 17 3.909086 GAAAGCCAGCTCGTGCCCT 62.909 63.158 5.73 0.00 40.80 5.19
17 18 3.435186 GAAAGCCAGCTCGTGCCC 61.435 66.667 5.73 0.00 40.80 5.36
18 19 2.192608 CTTGAAAGCCAGCTCGTGCC 62.193 60.000 5.73 0.00 40.80 5.01
19 20 1.208614 CTTGAAAGCCAGCTCGTGC 59.791 57.895 0.07 0.07 40.05 5.34
20 21 1.580845 CCCTTGAAAGCCAGCTCGTG 61.581 60.000 0.00 0.00 0.00 4.35
21 22 1.302832 CCCTTGAAAGCCAGCTCGT 60.303 57.895 0.00 0.00 0.00 4.18
22 23 0.606401 TTCCCTTGAAAGCCAGCTCG 60.606 55.000 0.00 0.00 0.00 5.03
23 24 1.270826 GTTTCCCTTGAAAGCCAGCTC 59.729 52.381 0.00 0.00 41.02 4.09
24 25 1.332195 GTTTCCCTTGAAAGCCAGCT 58.668 50.000 0.00 0.00 41.02 4.24
25 26 1.039856 TGTTTCCCTTGAAAGCCAGC 58.960 50.000 0.00 0.00 41.02 4.85
26 27 2.031120 TGTGTTTCCCTTGAAAGCCAG 58.969 47.619 0.00 0.00 41.02 4.85
27 28 2.151502 TGTGTTTCCCTTGAAAGCCA 57.848 45.000 0.00 0.00 41.02 4.75
28 29 2.430694 ACTTGTGTTTCCCTTGAAAGCC 59.569 45.455 0.00 0.00 41.02 4.35
29 30 3.130340 TCACTTGTGTTTCCCTTGAAAGC 59.870 43.478 0.46 0.00 41.02 3.51
30 31 4.202050 CCTCACTTGTGTTTCCCTTGAAAG 60.202 45.833 0.46 0.00 41.02 2.62
31 32 3.699038 CCTCACTTGTGTTTCCCTTGAAA 59.301 43.478 0.46 0.00 38.14 2.69
32 33 3.287222 CCTCACTTGTGTTTCCCTTGAA 58.713 45.455 0.46 0.00 0.00 2.69
33 34 2.930950 CCTCACTTGTGTTTCCCTTGA 58.069 47.619 0.46 0.00 0.00 3.02
34 35 1.338020 GCCTCACTTGTGTTTCCCTTG 59.662 52.381 0.46 0.00 0.00 3.61
35 36 1.215423 AGCCTCACTTGTGTTTCCCTT 59.785 47.619 0.46 0.00 0.00 3.95
36 37 0.846693 AGCCTCACTTGTGTTTCCCT 59.153 50.000 0.46 0.00 0.00 4.20
37 38 1.692411 AAGCCTCACTTGTGTTTCCC 58.308 50.000 0.46 0.00 37.17 3.97
38 39 2.687935 TCAAAGCCTCACTTGTGTTTCC 59.312 45.455 0.46 0.00 39.09 3.13
39 40 4.574599 ATCAAAGCCTCACTTGTGTTTC 57.425 40.909 0.46 0.00 39.09 2.78
40 41 4.402155 TGAATCAAAGCCTCACTTGTGTTT 59.598 37.500 0.46 0.00 39.09 2.83
41 42 3.953612 TGAATCAAAGCCTCACTTGTGTT 59.046 39.130 0.46 0.00 39.09 3.32
42 43 3.554934 TGAATCAAAGCCTCACTTGTGT 58.445 40.909 0.46 0.00 39.09 3.72
43 44 3.567164 ACTGAATCAAAGCCTCACTTGTG 59.433 43.478 0.00 0.00 39.09 3.33
44 45 3.817647 GACTGAATCAAAGCCTCACTTGT 59.182 43.478 0.00 0.00 39.09 3.16
45 46 3.120408 CGACTGAATCAAAGCCTCACTTG 60.120 47.826 0.00 0.00 39.09 3.16
46 47 3.070018 CGACTGAATCAAAGCCTCACTT 58.930 45.455 0.00 0.00 41.70 3.16
47 48 2.037772 ACGACTGAATCAAAGCCTCACT 59.962 45.455 0.00 0.00 0.00 3.41
48 49 2.413453 GACGACTGAATCAAAGCCTCAC 59.587 50.000 0.00 0.00 0.00 3.51
49 50 2.037121 TGACGACTGAATCAAAGCCTCA 59.963 45.455 0.00 0.00 0.00 3.86
50 51 2.688507 TGACGACTGAATCAAAGCCTC 58.311 47.619 0.00 0.00 0.00 4.70
51 52 2.839486 TGACGACTGAATCAAAGCCT 57.161 45.000 0.00 0.00 0.00 4.58
52 53 3.751621 CAATGACGACTGAATCAAAGCC 58.248 45.455 0.00 0.00 0.00 4.35
53 54 3.166657 GCAATGACGACTGAATCAAAGC 58.833 45.455 0.00 0.00 0.00 3.51
54 55 3.725895 CGGCAATGACGACTGAATCAAAG 60.726 47.826 0.22 0.00 35.20 2.77
55 56 2.159430 CGGCAATGACGACTGAATCAAA 59.841 45.455 0.22 0.00 35.20 2.69
56 57 1.731709 CGGCAATGACGACTGAATCAA 59.268 47.619 0.22 0.00 35.20 2.57
57 58 1.358877 CGGCAATGACGACTGAATCA 58.641 50.000 0.22 0.00 35.20 2.57
58 59 0.026803 GCGGCAATGACGACTGAATC 59.973 55.000 14.82 0.00 35.20 2.52
59 60 0.673333 TGCGGCAATGACGACTGAAT 60.673 50.000 14.82 0.00 35.20 2.57
60 61 1.291184 CTGCGGCAATGACGACTGAA 61.291 55.000 14.82 0.00 35.20 3.02
61 62 1.737735 CTGCGGCAATGACGACTGA 60.738 57.895 14.82 0.00 35.20 3.41
62 63 2.780643 CTGCGGCAATGACGACTG 59.219 61.111 14.82 3.94 35.20 3.51
63 64 3.121030 GCTGCGGCAATGACGACT 61.121 61.111 14.82 0.00 35.20 4.18
64 65 1.358725 TAAGCTGCGGCAATGACGAC 61.359 55.000 21.93 4.02 35.20 4.34
65 66 0.672091 TTAAGCTGCGGCAATGACGA 60.672 50.000 21.93 0.00 35.20 4.20
66 67 0.378257 ATTAAGCTGCGGCAATGACG 59.622 50.000 21.93 3.09 41.70 4.35
67 68 2.187707 CAATTAAGCTGCGGCAATGAC 58.812 47.619 21.93 0.00 41.70 3.06
68 69 1.818060 ACAATTAAGCTGCGGCAATGA 59.182 42.857 21.93 5.20 41.70 2.57
69 70 2.282701 ACAATTAAGCTGCGGCAATG 57.717 45.000 21.93 12.72 41.70 2.82
70 71 4.654091 ATAACAATTAAGCTGCGGCAAT 57.346 36.364 21.93 8.89 41.70 3.56
71 72 4.878971 TCTATAACAATTAAGCTGCGGCAA 59.121 37.500 21.93 6.51 41.70 4.52
72 73 4.447290 TCTATAACAATTAAGCTGCGGCA 58.553 39.130 21.93 1.29 41.70 5.69
73 74 5.418310 TTCTATAACAATTAAGCTGCGGC 57.582 39.130 10.33 10.33 39.06 6.53
74 75 5.007626 TGCTTCTATAACAATTAAGCTGCGG 59.992 40.000 8.02 0.00 42.34 5.69
75 76 6.018751 TCTGCTTCTATAACAATTAAGCTGCG 60.019 38.462 8.02 0.00 42.34 5.18
76 77 7.251704 TCTGCTTCTATAACAATTAAGCTGC 57.748 36.000 8.02 0.00 42.34 5.25
77 78 7.712639 TCCTCTGCTTCTATAACAATTAAGCTG 59.287 37.037 8.02 7.58 42.34 4.24
78 79 7.796054 TCCTCTGCTTCTATAACAATTAAGCT 58.204 34.615 8.02 0.00 42.34 3.74
79 80 8.338986 GTTCCTCTGCTTCTATAACAATTAAGC 58.661 37.037 0.00 0.00 42.22 3.09
80 81 8.543774 CGTTCCTCTGCTTCTATAACAATTAAG 58.456 37.037 0.00 0.00 0.00 1.85
81 82 7.011109 GCGTTCCTCTGCTTCTATAACAATTAA 59.989 37.037 0.00 0.00 0.00 1.40
82 83 6.479001 GCGTTCCTCTGCTTCTATAACAATTA 59.521 38.462 0.00 0.00 0.00 1.40
83 84 5.294552 GCGTTCCTCTGCTTCTATAACAATT 59.705 40.000 0.00 0.00 0.00 2.32
84 85 4.811557 GCGTTCCTCTGCTTCTATAACAAT 59.188 41.667 0.00 0.00 0.00 2.71
85 86 4.081642 AGCGTTCCTCTGCTTCTATAACAA 60.082 41.667 0.00 0.00 38.57 2.83
86 87 3.447586 AGCGTTCCTCTGCTTCTATAACA 59.552 43.478 0.00 0.00 38.57 2.41
87 88 4.048241 AGCGTTCCTCTGCTTCTATAAC 57.952 45.455 0.00 0.00 38.57 1.89
88 89 5.221263 CCTTAGCGTTCCTCTGCTTCTATAA 60.221 44.000 0.00 0.00 42.48 0.98
89 90 4.278669 CCTTAGCGTTCCTCTGCTTCTATA 59.721 45.833 0.00 0.00 42.48 1.31
90 91 3.068873 CCTTAGCGTTCCTCTGCTTCTAT 59.931 47.826 0.00 0.00 42.48 1.98
91 92 2.427453 CCTTAGCGTTCCTCTGCTTCTA 59.573 50.000 0.00 0.00 42.48 2.10
92 93 1.205893 CCTTAGCGTTCCTCTGCTTCT 59.794 52.381 0.00 0.00 42.48 2.85
93 94 1.066787 ACCTTAGCGTTCCTCTGCTTC 60.067 52.381 0.00 0.00 42.48 3.86
94 95 0.977395 ACCTTAGCGTTCCTCTGCTT 59.023 50.000 0.00 0.00 42.48 3.91
95 96 0.247736 CACCTTAGCGTTCCTCTGCT 59.752 55.000 0.00 0.00 45.04 4.24
96 97 0.037232 ACACCTTAGCGTTCCTCTGC 60.037 55.000 0.00 0.00 0.00 4.26
97 98 2.288825 TGAACACCTTAGCGTTCCTCTG 60.289 50.000 9.28 0.00 40.65 3.35
98 99 1.968493 TGAACACCTTAGCGTTCCTCT 59.032 47.619 9.28 0.00 40.65 3.69
99 100 2.450609 TGAACACCTTAGCGTTCCTC 57.549 50.000 9.28 0.00 40.65 3.71
100 101 2.490991 GTTGAACACCTTAGCGTTCCT 58.509 47.619 9.28 0.00 40.65 3.36
101 102 1.534163 GGTTGAACACCTTAGCGTTCC 59.466 52.381 0.00 0.00 43.29 3.62
102 103 1.193874 CGGTTGAACACCTTAGCGTTC 59.806 52.381 0.00 6.00 44.69 3.95
103 104 1.202557 TCGGTTGAACACCTTAGCGTT 60.203 47.619 0.00 0.00 44.69 4.84
104 105 0.390124 TCGGTTGAACACCTTAGCGT 59.610 50.000 0.00 0.00 44.69 5.07
105 106 0.788391 GTCGGTTGAACACCTTAGCG 59.212 55.000 0.00 0.00 44.69 4.26
106 107 1.154197 GGTCGGTTGAACACCTTAGC 58.846 55.000 0.00 0.00 44.69 3.09
107 108 1.425412 CGGTCGGTTGAACACCTTAG 58.575 55.000 0.00 0.00 44.69 2.18
108 109 0.033781 CCGGTCGGTTGAACACCTTA 59.966 55.000 0.55 0.00 44.69 2.69
109 110 1.227734 CCGGTCGGTTGAACACCTT 60.228 57.895 0.55 0.00 44.69 3.50
110 111 1.688269 TTCCGGTCGGTTGAACACCT 61.688 55.000 9.36 0.00 44.69 4.00
111 112 1.227615 TTCCGGTCGGTTGAACACC 60.228 57.895 9.36 0.00 43.16 4.16
112 113 0.810823 TGTTCCGGTCGGTTGAACAC 60.811 55.000 9.36 0.00 42.36 3.32
113 114 0.107800 TTGTTCCGGTCGGTTGAACA 60.108 50.000 9.36 9.69 44.70 3.18
114 115 0.584876 CTTGTTCCGGTCGGTTGAAC 59.415 55.000 9.36 7.30 39.02 3.18
115 116 0.178533 ACTTGTTCCGGTCGGTTGAA 59.821 50.000 9.36 0.00 36.47 2.69
116 117 0.249573 GACTTGTTCCGGTCGGTTGA 60.250 55.000 9.36 0.00 36.47 3.18
117 118 0.531090 TGACTTGTTCCGGTCGGTTG 60.531 55.000 9.36 0.00 35.45 3.77
118 119 0.178533 TTGACTTGTTCCGGTCGGTT 59.821 50.000 9.36 0.00 35.45 4.44
119 120 0.249741 CTTGACTTGTTCCGGTCGGT 60.250 55.000 9.36 0.00 35.45 4.69
120 121 0.949105 CCTTGACTTGTTCCGGTCGG 60.949 60.000 0.00 2.52 35.45 4.79
121 122 0.032952 TCCTTGACTTGTTCCGGTCG 59.967 55.000 0.00 0.00 35.45 4.79
122 123 1.070289 AGTCCTTGACTTGTTCCGGTC 59.930 52.381 0.00 0.00 40.28 4.79
123 124 1.129058 AGTCCTTGACTTGTTCCGGT 58.871 50.000 0.00 0.00 40.28 5.28
124 125 1.512926 CAGTCCTTGACTTGTTCCGG 58.487 55.000 0.00 0.00 41.37 5.14
125 126 0.868406 GCAGTCCTTGACTTGTTCCG 59.132 55.000 0.00 0.00 41.37 4.30
126 127 1.967319 TGCAGTCCTTGACTTGTTCC 58.033 50.000 0.00 0.00 41.37 3.62
127 128 3.565482 TCATTGCAGTCCTTGACTTGTTC 59.435 43.478 0.00 0.00 41.37 3.18
128 129 3.554934 TCATTGCAGTCCTTGACTTGTT 58.445 40.909 0.00 0.00 41.37 2.83
129 130 3.144506 CTCATTGCAGTCCTTGACTTGT 58.855 45.455 0.00 0.00 41.37 3.16
130 131 3.144506 ACTCATTGCAGTCCTTGACTTG 58.855 45.455 0.00 0.00 41.37 3.16
131 132 3.498774 ACTCATTGCAGTCCTTGACTT 57.501 42.857 0.00 0.00 41.37 3.01
132 133 3.498774 AACTCATTGCAGTCCTTGACT 57.501 42.857 0.00 0.00 44.44 3.41
133 134 3.126000 GCTAACTCATTGCAGTCCTTGAC 59.874 47.826 0.00 0.00 0.00 3.18
134 135 3.008375 AGCTAACTCATTGCAGTCCTTGA 59.992 43.478 0.00 0.00 0.00 3.02
135 136 3.341823 AGCTAACTCATTGCAGTCCTTG 58.658 45.455 0.00 0.00 0.00 3.61
136 137 3.710209 AGCTAACTCATTGCAGTCCTT 57.290 42.857 0.00 0.00 0.00 3.36
137 138 4.026744 TCTAGCTAACTCATTGCAGTCCT 58.973 43.478 0.00 0.00 0.00 3.85
138 139 4.367450 CTCTAGCTAACTCATTGCAGTCC 58.633 47.826 0.00 0.00 0.00 3.85
139 140 3.801594 GCTCTAGCTAACTCATTGCAGTC 59.198 47.826 0.00 0.00 38.21 3.51
140 141 3.431486 GGCTCTAGCTAACTCATTGCAGT 60.431 47.826 1.39 0.00 41.70 4.40
141 142 3.129871 GGCTCTAGCTAACTCATTGCAG 58.870 50.000 1.39 0.00 41.70 4.41
142 143 2.501316 TGGCTCTAGCTAACTCATTGCA 59.499 45.455 1.39 0.00 41.70 4.08
143 144 3.185246 TGGCTCTAGCTAACTCATTGC 57.815 47.619 1.39 0.00 41.70 3.56
144 145 4.040217 AGGATGGCTCTAGCTAACTCATTG 59.960 45.833 1.39 0.00 41.70 2.82
145 146 4.230455 AGGATGGCTCTAGCTAACTCATT 58.770 43.478 1.39 0.00 41.70 2.57
146 147 3.855668 AGGATGGCTCTAGCTAACTCAT 58.144 45.455 1.39 0.00 41.70 2.90
147 148 3.320610 AGGATGGCTCTAGCTAACTCA 57.679 47.619 1.39 0.00 41.70 3.41
148 149 3.639094 TCAAGGATGGCTCTAGCTAACTC 59.361 47.826 1.39 0.00 41.70 3.01
149 150 3.386402 GTCAAGGATGGCTCTAGCTAACT 59.614 47.826 1.39 0.00 41.70 2.24
150 151 3.723260 GTCAAGGATGGCTCTAGCTAAC 58.277 50.000 1.39 0.00 41.70 2.34
151 152 2.362397 CGTCAAGGATGGCTCTAGCTAA 59.638 50.000 1.39 0.00 41.70 3.09
152 153 1.957177 CGTCAAGGATGGCTCTAGCTA 59.043 52.381 1.39 0.00 41.70 3.32
153 154 0.749649 CGTCAAGGATGGCTCTAGCT 59.250 55.000 1.39 0.00 41.70 3.32
154 155 0.747255 TCGTCAAGGATGGCTCTAGC 59.253 55.000 0.00 0.00 41.14 3.42
155 156 3.526931 TTTCGTCAAGGATGGCTCTAG 57.473 47.619 0.00 0.00 0.00 2.43
156 157 4.081142 TGAATTTCGTCAAGGATGGCTCTA 60.081 41.667 0.00 0.00 0.00 2.43
157 158 3.274288 GAATTTCGTCAAGGATGGCTCT 58.726 45.455 0.00 0.00 0.00 4.09
158 159 3.009723 TGAATTTCGTCAAGGATGGCTC 58.990 45.455 0.00 0.00 0.00 4.70
159 160 3.071874 TGAATTTCGTCAAGGATGGCT 57.928 42.857 0.00 0.00 0.00 4.75
160 161 3.378112 TCATGAATTTCGTCAAGGATGGC 59.622 43.478 0.00 0.00 0.00 4.40
161 162 4.637534 AGTCATGAATTTCGTCAAGGATGG 59.362 41.667 0.00 0.00 0.00 3.51
162 163 5.448225 CCAGTCATGAATTTCGTCAAGGATG 60.448 44.000 0.00 0.00 0.00 3.51
163 164 4.637534 CCAGTCATGAATTTCGTCAAGGAT 59.362 41.667 0.00 0.00 0.00 3.24
164 165 4.002982 CCAGTCATGAATTTCGTCAAGGA 58.997 43.478 0.00 0.00 0.00 3.36
165 166 3.426695 GCCAGTCATGAATTTCGTCAAGG 60.427 47.826 0.00 0.00 0.00 3.61
166 167 3.189080 TGCCAGTCATGAATTTCGTCAAG 59.811 43.478 0.00 0.00 0.00 3.02
167 168 3.058293 GTGCCAGTCATGAATTTCGTCAA 60.058 43.478 0.00 0.00 0.00 3.18
168 169 2.483877 GTGCCAGTCATGAATTTCGTCA 59.516 45.455 0.00 0.00 0.00 4.35
169 170 2.483877 TGTGCCAGTCATGAATTTCGTC 59.516 45.455 0.00 0.00 0.00 4.20
170 171 2.485426 CTGTGCCAGTCATGAATTTCGT 59.515 45.455 0.00 0.00 0.00 3.85
171 172 2.485426 ACTGTGCCAGTCATGAATTTCG 59.515 45.455 0.00 0.00 41.21 3.46
172 173 3.829948 CACTGTGCCAGTCATGAATTTC 58.170 45.455 0.00 0.00 43.43 2.17
173 174 2.029649 GCACTGTGCCAGTCATGAATTT 60.030 45.455 21.78 0.00 43.43 1.82
174 175 1.542915 GCACTGTGCCAGTCATGAATT 59.457 47.619 21.78 0.00 43.43 2.17
175 176 1.171308 GCACTGTGCCAGTCATGAAT 58.829 50.000 21.78 0.00 43.43 2.57
176 177 0.179023 TGCACTGTGCCAGTCATGAA 60.179 50.000 28.17 4.96 43.43 2.57
177 178 0.604511 CTGCACTGTGCCAGTCATGA 60.605 55.000 28.17 7.60 43.43 3.07
178 179 1.583495 CCTGCACTGTGCCAGTCATG 61.583 60.000 28.17 10.04 43.43 3.07
179 180 1.303074 CCTGCACTGTGCCAGTCAT 60.303 57.895 28.17 0.00 43.43 3.06
180 181 2.111669 CCTGCACTGTGCCAGTCA 59.888 61.111 28.17 9.78 43.43 3.41
181 182 2.111878 ACCTGCACTGTGCCAGTC 59.888 61.111 28.17 2.90 43.43 3.51
182 183 1.695114 TACACCTGCACTGTGCCAGT 61.695 55.000 28.17 21.77 46.51 4.00
183 184 0.952497 CTACACCTGCACTGTGCCAG 60.952 60.000 28.17 22.79 44.23 4.85
184 185 1.071299 CTACACCTGCACTGTGCCA 59.929 57.895 28.17 15.79 44.23 4.92
185 186 1.672356 CCTACACCTGCACTGTGCC 60.672 63.158 28.17 12.12 44.23 5.01
186 187 1.071471 ACCTACACCTGCACTGTGC 59.929 57.895 25.15 25.15 45.29 4.57
187 188 0.106708 ACACCTACACCTGCACTGTG 59.893 55.000 2.76 2.76 39.63 3.66
188 189 0.106708 CACACCTACACCTGCACTGT 59.893 55.000 0.00 0.00 0.00 3.55
189 190 0.603707 CCACACCTACACCTGCACTG 60.604 60.000 0.00 0.00 0.00 3.66
190 191 1.754745 CCACACCTACACCTGCACT 59.245 57.895 0.00 0.00 0.00 4.40
191 192 1.302511 CCCACACCTACACCTGCAC 60.303 63.158 0.00 0.00 0.00 4.57
192 193 1.768482 ACCCACACCTACACCTGCA 60.768 57.895 0.00 0.00 0.00 4.41
193 194 1.302511 CACCCACACCTACACCTGC 60.303 63.158 0.00 0.00 0.00 4.85
194 195 1.125093 TCCACCCACACCTACACCTG 61.125 60.000 0.00 0.00 0.00 4.00
195 196 0.178873 ATCCACCCACACCTACACCT 60.179 55.000 0.00 0.00 0.00 4.00
196 197 0.696501 AATCCACCCACACCTACACC 59.303 55.000 0.00 0.00 0.00 4.16
197 198 2.835764 TCTAATCCACCCACACCTACAC 59.164 50.000 0.00 0.00 0.00 2.90
198 199 3.193395 TCTAATCCACCCACACCTACA 57.807 47.619 0.00 0.00 0.00 2.74
199 200 3.709653 TGATCTAATCCACCCACACCTAC 59.290 47.826 0.00 0.00 0.00 3.18
200 201 4.002256 TGATCTAATCCACCCACACCTA 57.998 45.455 0.00 0.00 0.00 3.08
201 202 2.845659 TGATCTAATCCACCCACACCT 58.154 47.619 0.00 0.00 0.00 4.00
202 203 3.864789 ATGATCTAATCCACCCACACC 57.135 47.619 0.00 0.00 0.00 4.16
203 204 5.418840 ACAAAATGATCTAATCCACCCACAC 59.581 40.000 0.00 0.00 0.00 3.82
204 205 5.418524 CACAAAATGATCTAATCCACCCACA 59.581 40.000 0.00 0.00 0.00 4.17
205 206 5.652014 TCACAAAATGATCTAATCCACCCAC 59.348 40.000 0.00 0.00 29.99 4.61
206 207 5.825532 TCACAAAATGATCTAATCCACCCA 58.174 37.500 0.00 0.00 29.99 4.51
207 208 6.122277 TCTCACAAAATGATCTAATCCACCC 58.878 40.000 0.00 0.00 36.48 4.61
208 209 7.050377 TCTCTCACAAAATGATCTAATCCACC 58.950 38.462 0.00 0.00 36.48 4.61
209 210 8.674263 ATCTCTCACAAAATGATCTAATCCAC 57.326 34.615 0.00 0.00 36.48 4.02
210 211 8.488668 TGATCTCTCACAAAATGATCTAATCCA 58.511 33.333 0.00 0.00 36.48 3.41
211 212 8.899427 TGATCTCTCACAAAATGATCTAATCC 57.101 34.615 0.00 0.00 36.48 3.01
234 235 5.047306 ACACCTACAAGAAGATCAATCGTGA 60.047 40.000 17.03 4.85 38.41 4.35
235 236 5.062683 CACACCTACAAGAAGATCAATCGTG 59.937 44.000 11.14 11.14 33.32 4.35
236 237 5.171476 CACACCTACAAGAAGATCAATCGT 58.829 41.667 0.00 0.00 0.00 3.73
237 238 5.062683 CACACACCTACAAGAAGATCAATCG 59.937 44.000 0.00 0.00 0.00 3.34
238 239 5.934625 ACACACACCTACAAGAAGATCAATC 59.065 40.000 0.00 0.00 0.00 2.67
239 240 5.702670 CACACACACCTACAAGAAGATCAAT 59.297 40.000 0.00 0.00 0.00 2.57
240 241 5.056480 CACACACACCTACAAGAAGATCAA 58.944 41.667 0.00 0.00 0.00 2.57
241 242 4.503123 CCACACACACCTACAAGAAGATCA 60.503 45.833 0.00 0.00 0.00 2.92
242 243 3.997021 CCACACACACCTACAAGAAGATC 59.003 47.826 0.00 0.00 0.00 2.75
243 244 3.244561 CCCACACACACCTACAAGAAGAT 60.245 47.826 0.00 0.00 0.00 2.40
244 245 2.104111 CCCACACACACCTACAAGAAGA 59.896 50.000 0.00 0.00 0.00 2.87
245 246 2.158813 ACCCACACACACCTACAAGAAG 60.159 50.000 0.00 0.00 0.00 2.85
246 247 1.841277 ACCCACACACACCTACAAGAA 59.159 47.619 0.00 0.00 0.00 2.52
247 248 1.140052 CACCCACACACACCTACAAGA 59.860 52.381 0.00 0.00 0.00 3.02
248 249 1.593196 CACCCACACACACCTACAAG 58.407 55.000 0.00 0.00 0.00 3.16
249 250 0.464735 GCACCCACACACACCTACAA 60.465 55.000 0.00 0.00 0.00 2.41
250 251 1.147376 GCACCCACACACACCTACA 59.853 57.895 0.00 0.00 0.00 2.74
251 252 0.602905 GAGCACCCACACACACCTAC 60.603 60.000 0.00 0.00 0.00 3.18
252 253 1.752198 GAGCACCCACACACACCTA 59.248 57.895 0.00 0.00 0.00 3.08
253 254 2.510906 GAGCACCCACACACACCT 59.489 61.111 0.00 0.00 0.00 4.00
254 255 2.972505 CGAGCACCCACACACACC 60.973 66.667 0.00 0.00 0.00 4.16
255 256 2.972505 CCGAGCACCCACACACAC 60.973 66.667 0.00 0.00 0.00 3.82
256 257 4.248842 CCCGAGCACCCACACACA 62.249 66.667 0.00 0.00 0.00 3.72
257 258 4.250305 ACCCGAGCACCCACACAC 62.250 66.667 0.00 0.00 0.00 3.82
258 259 4.248842 CACCCGAGCACCCACACA 62.249 66.667 0.00 0.00 0.00 3.72
259 260 3.254024 ATCACCCGAGCACCCACAC 62.254 63.158 0.00 0.00 0.00 3.82
260 261 2.927856 ATCACCCGAGCACCCACA 60.928 61.111 0.00 0.00 0.00 4.17
261 262 2.125106 GATCACCCGAGCACCCAC 60.125 66.667 0.00 0.00 0.00 4.61
262 263 3.770040 CGATCACCCGAGCACCCA 61.770 66.667 0.00 0.00 0.00 4.51
263 264 2.797278 ATCGATCACCCGAGCACCC 61.797 63.158 0.00 0.00 42.21 4.61
264 265 1.592669 CATCGATCACCCGAGCACC 60.593 63.158 0.00 0.00 42.21 5.01
265 266 0.460284 AACATCGATCACCCGAGCAC 60.460 55.000 0.00 0.00 42.21 4.40
266 267 0.179111 GAACATCGATCACCCGAGCA 60.179 55.000 0.00 0.00 42.21 4.26
267 268 1.209275 CGAACATCGATCACCCGAGC 61.209 60.000 0.00 0.00 43.74 5.03
268 269 1.209275 GCGAACATCGATCACCCGAG 61.209 60.000 3.61 0.00 43.74 4.63
269 270 1.226859 GCGAACATCGATCACCCGA 60.227 57.895 3.61 0.00 43.74 5.14
270 271 0.875908 ATGCGAACATCGATCACCCG 60.876 55.000 3.61 0.00 43.74 5.28
271 272 1.003545 CAATGCGAACATCGATCACCC 60.004 52.381 3.61 0.00 43.74 4.61
272 273 1.933181 TCAATGCGAACATCGATCACC 59.067 47.619 3.61 0.00 43.74 4.02
273 274 3.660132 CGATCAATGCGAACATCGATCAC 60.660 47.826 3.61 0.00 43.93 3.06
274 275 2.472488 CGATCAATGCGAACATCGATCA 59.528 45.455 3.61 0.00 43.93 2.92
275 276 2.719988 GCGATCAATGCGAACATCGATC 60.720 50.000 10.95 0.80 43.74 3.69
276 277 1.193203 GCGATCAATGCGAACATCGAT 59.807 47.619 10.95 0.00 43.74 3.59
277 278 0.576798 GCGATCAATGCGAACATCGA 59.423 50.000 10.95 0.00 43.74 3.59
278 279 0.301388 TGCGATCAATGCGAACATCG 59.699 50.000 0.00 4.14 43.89 3.84
279 280 1.734885 GTGCGATCAATGCGAACATC 58.265 50.000 0.00 0.00 37.26 3.06
280 281 0.026674 CGTGCGATCAATGCGAACAT 59.973 50.000 0.00 0.00 37.13 2.71
281 282 1.011451 TCGTGCGATCAATGCGAACA 61.011 50.000 0.00 0.00 37.13 3.18
282 283 0.094558 TTCGTGCGATCAATGCGAAC 59.905 50.000 7.12 0.00 36.78 3.95
283 284 1.005032 GATTCGTGCGATCAATGCGAA 60.005 47.619 11.73 11.73 43.93 4.70
284 285 0.576798 GATTCGTGCGATCAATGCGA 59.423 50.000 0.00 0.00 34.24 5.10
285 286 0.578683 AGATTCGTGCGATCAATGCG 59.421 50.000 0.00 0.00 34.24 4.73
286 287 2.223112 ACAAGATTCGTGCGATCAATGC 60.223 45.455 0.00 0.00 0.00 3.56
287 288 3.663464 ACAAGATTCGTGCGATCAATG 57.337 42.857 0.00 2.94 0.00 2.82
288 289 5.991328 ATTACAAGATTCGTGCGATCAAT 57.009 34.783 0.00 0.00 0.00 2.57
289 290 5.794687 AATTACAAGATTCGTGCGATCAA 57.205 34.783 0.00 0.00 0.00 2.57
290 291 5.794687 AAATTACAAGATTCGTGCGATCA 57.205 34.783 0.00 0.00 0.00 2.92
314 315 9.991906 CGTACCATATTTTTATAGAAGGGAGAA 57.008 33.333 0.00 0.00 0.00 2.87
315 316 9.151177 ACGTACCATATTTTTATAGAAGGGAGA 57.849 33.333 0.00 0.00 0.00 3.71
316 317 9.420551 GACGTACCATATTTTTATAGAAGGGAG 57.579 37.037 0.00 0.00 0.00 4.30
317 318 8.926374 TGACGTACCATATTTTTATAGAAGGGA 58.074 33.333 0.00 0.00 0.00 4.20
318 319 9.720769 ATGACGTACCATATTTTTATAGAAGGG 57.279 33.333 0.00 0.00 0.00 3.95
322 323 8.995220 GCCAATGACGTACCATATTTTTATAGA 58.005 33.333 0.00 0.00 0.00 1.98
323 324 7.955324 CGCCAATGACGTACCATATTTTTATAG 59.045 37.037 0.00 0.00 0.00 1.31
324 325 7.441760 ACGCCAATGACGTACCATATTTTTATA 59.558 33.333 0.00 0.00 43.02 0.98
325 326 6.261381 ACGCCAATGACGTACCATATTTTTAT 59.739 34.615 0.00 0.00 43.02 1.40
326 327 5.585445 ACGCCAATGACGTACCATATTTTTA 59.415 36.000 0.00 0.00 43.02 1.52
327 328 4.396790 ACGCCAATGACGTACCATATTTTT 59.603 37.500 0.00 0.00 43.02 1.94
328 329 3.942748 ACGCCAATGACGTACCATATTTT 59.057 39.130 0.00 0.00 43.02 1.82
329 330 3.537580 ACGCCAATGACGTACCATATTT 58.462 40.909 0.00 0.00 43.02 1.40
330 331 3.188159 ACGCCAATGACGTACCATATT 57.812 42.857 0.00 0.00 43.02 1.28
331 332 2.902705 ACGCCAATGACGTACCATAT 57.097 45.000 0.00 0.00 43.02 1.78
337 338 1.063027 CGAGAGTACGCCAATGACGTA 59.937 52.381 0.00 0.00 44.55 3.57
339 340 0.098200 TCGAGAGTACGCCAATGACG 59.902 55.000 0.00 0.00 0.00 4.35
340 341 2.273370 TTCGAGAGTACGCCAATGAC 57.727 50.000 0.00 0.00 0.00 3.06
341 342 3.306917 TTTTCGAGAGTACGCCAATGA 57.693 42.857 0.00 0.00 0.00 2.57
361 362 3.897141 TTTTTGCGGGGAAGTCTTTTT 57.103 38.095 0.00 0.00 0.00 1.94
381 382 1.571215 CGGTCTTACGGGCGCTTTTT 61.571 55.000 7.64 0.00 0.00 1.94
382 383 2.030958 CGGTCTTACGGGCGCTTTT 61.031 57.895 7.64 0.00 0.00 2.27
383 384 1.876497 TACGGTCTTACGGGCGCTTT 61.876 55.000 7.64 0.00 38.39 3.51
384 385 1.876497 TTACGGTCTTACGGGCGCTT 61.876 55.000 7.64 0.00 38.39 4.68
385 386 1.669999 ATTACGGTCTTACGGGCGCT 61.670 55.000 7.64 0.00 38.39 5.92
386 387 1.211181 GATTACGGTCTTACGGGCGC 61.211 60.000 0.00 0.00 38.39 6.53
387 388 0.383231 AGATTACGGTCTTACGGGCG 59.617 55.000 0.00 0.00 38.39 6.13
388 389 2.591571 AAGATTACGGTCTTACGGGC 57.408 50.000 0.00 0.00 36.71 6.13
389 390 4.357996 GAGAAAGATTACGGTCTTACGGG 58.642 47.826 1.25 0.00 37.46 5.28
412 413 8.539770 TTTAACTCTTGCAGTCTTCATCTAAG 57.460 34.615 0.00 0.00 32.30 2.18
413 414 8.150945 ACTTTAACTCTTGCAGTCTTCATCTAA 58.849 33.333 0.00 0.00 32.30 2.10
439 440 9.162764 GCTCAGTTGATTAACCACTATTCTTAA 57.837 33.333 0.00 0.00 37.52 1.85
482 483 2.970639 CTGACACGTCGGACCCAT 59.029 61.111 1.91 0.00 38.21 4.00
781 783 4.082733 CCCCATCTTTTCGTCTTTTTCTCC 60.083 45.833 0.00 0.00 0.00 3.71
1113 1115 4.681978 GAGGTGCCGTGGCGACTT 62.682 66.667 6.37 2.34 45.51 3.01
1418 1420 5.223449 ACGAACAGGATGAAACTAAAGGA 57.777 39.130 0.00 0.00 39.69 3.36
1618 1620 1.134670 CCTGTCTCCCGTTCATCCTTC 60.135 57.143 0.00 0.00 0.00 3.46
1777 1779 1.900351 CTCATCCTTCACCTCCGCA 59.100 57.895 0.00 0.00 0.00 5.69
2400 2402 0.694771 AGCCAGATTCCAAGTGCTCA 59.305 50.000 0.00 0.00 0.00 4.26
2460 2470 3.599584 TGGACGGTCCAGATCGAC 58.400 61.111 25.53 0.26 42.67 4.20
2483 2493 1.751563 GCCTATCTCCAGCTCACCC 59.248 63.158 0.00 0.00 0.00 4.61
2534 2544 2.124024 GGTATTTGGGACGGGGGC 60.124 66.667 0.00 0.00 0.00 5.80
2695 2705 1.921243 CGCATGTGAGACCACGATTA 58.079 50.000 0.00 0.00 46.06 1.75
2768 2778 6.202188 AGGCACCAACGATTATTTTACGATAG 59.798 38.462 0.00 0.00 46.19 2.08
2776 2831 4.080863 AGAGAGAGGCACCAACGATTATTT 60.081 41.667 0.00 0.00 0.00 1.40
2792 2847 3.129287 GGTGAGCAGAGAAAGAGAGAGAG 59.871 52.174 0.00 0.00 0.00 3.20
2828 2883 1.270305 GCCGCTCTCCTGCACATAATA 60.270 52.381 0.00 0.00 0.00 0.98
2829 2884 0.533755 GCCGCTCTCCTGCACATAAT 60.534 55.000 0.00 0.00 0.00 1.28
2830 2885 1.153369 GCCGCTCTCCTGCACATAA 60.153 57.895 0.00 0.00 0.00 1.90
2953 3008 3.921521 CGGTAGAACTCGGAGGCT 58.078 61.111 10.23 8.71 0.00 4.58
2971 3026 2.185494 GCATAGCAGCAGCAGGTCC 61.185 63.158 3.17 0.00 45.49 4.46
3433 3488 1.664649 CGTCCTTTCGTCAGCTGCA 60.665 57.895 9.47 0.00 0.00 4.41
3940 4007 2.035449 CCCCCGTCCAAAAGAAAAACTC 59.965 50.000 0.00 0.00 0.00 3.01
3962 4029 1.459592 GCGCAAGTCAGTTTCGTACAT 59.540 47.619 0.30 0.00 41.68 2.29
4075 4143 1.130561 GTACCGCCAGTGCATTTTCTC 59.869 52.381 0.00 0.00 37.32 2.87
4076 4144 1.165270 GTACCGCCAGTGCATTTTCT 58.835 50.000 0.00 0.00 37.32 2.52
4077 4145 1.165270 AGTACCGCCAGTGCATTTTC 58.835 50.000 0.00 0.00 37.32 2.29
4167 4235 1.141645 GACCGTACAATCACGTGCAA 58.858 50.000 11.67 0.00 40.31 4.08
4345 4425 2.670148 CCCCTTTCACCTCCTCCCG 61.670 68.421 0.00 0.00 0.00 5.14
4579 4711 5.445939 GCATATCTGACTAACAAACACACCG 60.446 44.000 0.00 0.00 0.00 4.94
4689 4839 5.240623 CAGCACCAAATAACCTACAAACAGA 59.759 40.000 0.00 0.00 0.00 3.41
4772 4922 6.851222 ATAGATGCAAGATACCAACTTTCG 57.149 37.500 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.