Multiple sequence alignment - TraesCS7D01G245700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G245700 chr7D 100.000 3215 0 0 1 3215 214355602 214352388 0.000000e+00 5938
1 TraesCS7D01G245700 chr7D 79.925 797 138 18 80 865 78898992 78899777 1.670000e-157 566
2 TraesCS7D01G245700 chr7A 95.952 2248 53 6 970 3215 226759012 226756801 0.000000e+00 3613
3 TraesCS7D01G245700 chr7A 90.432 324 31 0 1037 1360 621011430 621011107 8.240000e-116 427
4 TraesCS7D01G245700 chr7A 91.815 281 22 1 5 284 171286734 171286454 1.080000e-104 390
5 TraesCS7D01G245700 chr7A 81.383 188 19 10 1 174 668025014 668025199 4.320000e-29 139
6 TraesCS7D01G245700 chr7B 95.189 2245 62 13 984 3215 186814334 186816545 0.000000e+00 3506
7 TraesCS7D01G245700 chr3D 92.647 952 54 8 1 947 387352798 387353738 0.000000e+00 1356
8 TraesCS7D01G245700 chr3D 92.356 955 65 4 1 947 38911005 38911959 0.000000e+00 1352
9 TraesCS7D01G245700 chrUn 90.661 953 72 10 1 948 115498577 115499517 0.000000e+00 1251
10 TraesCS7D01G245700 chr6D 90.536 951 63 12 1 947 89362121 89363048 0.000000e+00 1232
11 TraesCS7D01G245700 chr3A 89.706 952 92 6 1 947 594500869 594499919 0.000000e+00 1210
12 TraesCS7D01G245700 chr3A 75.657 571 87 20 113 678 147278066 147277543 1.490000e-58 237
13 TraesCS7D01G245700 chr2D 89.895 950 60 11 1 947 604688333 604689249 0.000000e+00 1190
14 TraesCS7D01G245700 chr3B 88.470 954 79 17 1 947 771723866 771724795 0.000000e+00 1123
15 TraesCS7D01G245700 chr6B 90.944 784 59 5 165 947 13641481 13642253 0.000000e+00 1044
16 TraesCS7D01G245700 chr6A 89.664 774 70 9 1 768 563167273 563166504 0.000000e+00 977
17 TraesCS7D01G245700 chr2A 84.659 352 42 7 995 1346 747160079 747160418 1.100000e-89 340


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G245700 chr7D 214352388 214355602 3214 True 5938 5938 100.000 1 3215 1 chr7D.!!$R1 3214
1 TraesCS7D01G245700 chr7D 78898992 78899777 785 False 566 566 79.925 80 865 1 chr7D.!!$F1 785
2 TraesCS7D01G245700 chr7A 226756801 226759012 2211 True 3613 3613 95.952 970 3215 1 chr7A.!!$R2 2245
3 TraesCS7D01G245700 chr7B 186814334 186816545 2211 False 3506 3506 95.189 984 3215 1 chr7B.!!$F1 2231
4 TraesCS7D01G245700 chr3D 387352798 387353738 940 False 1356 1356 92.647 1 947 1 chr3D.!!$F2 946
5 TraesCS7D01G245700 chr3D 38911005 38911959 954 False 1352 1352 92.356 1 947 1 chr3D.!!$F1 946
6 TraesCS7D01G245700 chrUn 115498577 115499517 940 False 1251 1251 90.661 1 948 1 chrUn.!!$F1 947
7 TraesCS7D01G245700 chr6D 89362121 89363048 927 False 1232 1232 90.536 1 947 1 chr6D.!!$F1 946
8 TraesCS7D01G245700 chr3A 594499919 594500869 950 True 1210 1210 89.706 1 947 1 chr3A.!!$R2 946
9 TraesCS7D01G245700 chr3A 147277543 147278066 523 True 237 237 75.657 113 678 1 chr3A.!!$R1 565
10 TraesCS7D01G245700 chr2D 604688333 604689249 916 False 1190 1190 89.895 1 947 1 chr2D.!!$F1 946
11 TraesCS7D01G245700 chr3B 771723866 771724795 929 False 1123 1123 88.470 1 947 1 chr3B.!!$F1 946
12 TraesCS7D01G245700 chr6B 13641481 13642253 772 False 1044 1044 90.944 165 947 1 chr6B.!!$F1 782
13 TraesCS7D01G245700 chr6A 563166504 563167273 769 True 977 977 89.664 1 768 1 chr6A.!!$R1 767

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
271 282 0.392998 CCCTTGATGGACAACCTCCG 60.393 60.0 0.00 0.0 43.03 4.63 F
792 813 2.093500 CGGTTGATCAGATGAGGTGGAA 60.093 50.0 0.00 0.0 0.00 3.53 F
1396 1425 0.666274 TCGCAGTGTGAACATCCGTC 60.666 55.0 3.29 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1375 1402 0.163788 CGGATGTTCACACTGCGAAC 59.836 55.000 3.38 3.38 42.52 3.95 R
2038 2071 1.453524 CTTCGAAACGACAGTGCTCAG 59.546 52.381 0.00 0.00 34.89 3.35 R
2311 2344 4.398044 ACAAAACGATTGTGTTTCTGGAGT 59.602 37.500 9.86 0.00 41.01 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 130 1.358725 GCACTCAATAGCGTTGGCGA 61.359 55.000 5.27 0.00 46.35 5.54
167 175 6.543831 GGAAAGCACAAGTATCTCATACCATT 59.456 38.462 0.00 0.00 36.40 3.16
271 282 0.392998 CCCTTGATGGACAACCTCCG 60.393 60.000 0.00 0.00 43.03 4.63
293 304 3.316308 GCAGTATTGTAGGCAATTGAGGG 59.684 47.826 10.34 0.00 42.19 4.30
362 373 5.072600 TGAGGTACACAACTTAGAACCCATT 59.927 40.000 0.00 0.00 0.00 3.16
384 397 2.988010 ATGCAACTTCCGCTCTATGA 57.012 45.000 0.00 0.00 0.00 2.15
472 487 7.985752 ACTTAGCAACCATGTTAACTACCTATC 59.014 37.037 7.22 0.00 30.33 2.08
576 593 4.455877 GGCTCATGTTAGCACTAAAGTTGT 59.544 41.667 8.50 0.00 44.64 3.32
600 617 7.095060 TGTCTCATCTAGCATCAAAGTTGTTTC 60.095 37.037 0.00 0.00 0.00 2.78
653 674 4.429108 AGATCTAGTTTTGAAGAGCTCGC 58.571 43.478 8.37 5.34 0.00 5.03
699 720 5.898174 ACAGATAATAATTCGGACACGTGA 58.102 37.500 25.01 0.00 41.85 4.35
750 771 9.624697 TTTCTAACACTGAAATTAATGCATGAC 57.375 29.630 0.00 0.00 0.00 3.06
792 813 2.093500 CGGTTGATCAGATGAGGTGGAA 60.093 50.000 0.00 0.00 0.00 3.53
851 876 5.894298 ATATAGAATGAGTGGGTGAGCAA 57.106 39.130 0.00 0.00 0.00 3.91
886 911 5.063204 TGAAACCGATTTGTCTCATCTTGT 58.937 37.500 0.00 0.00 0.00 3.16
898 923 2.874086 CTCATCTTGTAATCCATGCGCA 59.126 45.455 14.96 14.96 0.00 6.09
913 940 3.709768 GCATGCGCTCGCGATGAT 61.710 61.111 10.36 0.00 45.51 2.45
948 975 2.968574 TGCACTTTTAAGCATTTGGGGA 59.031 40.909 0.00 0.00 35.51 4.81
949 976 3.244044 TGCACTTTTAAGCATTTGGGGAC 60.244 43.478 0.00 0.00 35.51 4.46
950 977 3.006859 GCACTTTTAAGCATTTGGGGACT 59.993 43.478 0.00 0.00 0.00 3.85
951 978 4.503123 GCACTTTTAAGCATTTGGGGACTT 60.503 41.667 0.00 0.00 0.00 3.01
952 979 5.610398 CACTTTTAAGCATTTGGGGACTTT 58.390 37.500 0.00 0.00 0.00 2.66
953 980 6.054941 CACTTTTAAGCATTTGGGGACTTTT 58.945 36.000 0.00 0.00 0.00 2.27
954 981 6.542005 CACTTTTAAGCATTTGGGGACTTTTT 59.458 34.615 0.00 0.00 0.00 1.94
1375 1402 1.747355 CTATACCTATACGGGGTGCGG 59.253 57.143 0.00 0.00 37.65 5.69
1396 1425 0.666274 TCGCAGTGTGAACATCCGTC 60.666 55.000 3.29 0.00 0.00 4.79
1397 1426 0.667487 CGCAGTGTGAACATCCGTCT 60.667 55.000 0.00 0.00 0.00 4.18
1406 1435 4.929211 TGTGAACATCCGTCTAGTGATTTG 59.071 41.667 0.00 0.00 0.00 2.32
1413 1442 3.709653 TCCGTCTAGTGATTTGCCCTTAT 59.290 43.478 0.00 0.00 0.00 1.73
1418 1447 6.260936 CGTCTAGTGATTTGCCCTTATTCAAT 59.739 38.462 0.00 0.00 0.00 2.57
1536 1568 6.693315 TCTTATAGCACTGTTAATTTGGCC 57.307 37.500 0.00 0.00 0.00 5.36
1537 1569 6.423182 TCTTATAGCACTGTTAATTTGGCCT 58.577 36.000 3.32 0.00 0.00 5.19
1545 1577 6.173339 CACTGTTAATTTGGCCTAGAGAAGA 58.827 40.000 3.32 0.00 0.00 2.87
1888 1921 6.268566 GCCACTATTCCTCATCAAATGTTTC 58.731 40.000 0.00 0.00 0.00 2.78
1959 1992 1.064003 TGGCTTTGGAACTAGGAGCA 58.936 50.000 0.00 0.00 35.12 4.26
2038 2071 2.094854 CCTCTGTTGCAAAAGAGATGGC 60.095 50.000 37.69 9.33 42.15 4.40
2046 2079 2.434428 CAAAAGAGATGGCTGAGCACT 58.566 47.619 6.82 1.92 0.00 4.40
2049 2082 0.536260 AGAGATGGCTGAGCACTGTC 59.464 55.000 6.82 0.32 0.00 3.51
2292 2325 7.839680 ATTCCACCTGTTCTTTTTCTGTTAT 57.160 32.000 0.00 0.00 0.00 1.89
2309 2342 9.715121 TTTCTGTTATCGTTTTTAGGAGTATGT 57.285 29.630 0.00 0.00 0.00 2.29
2354 2395 3.751175 TGTACAACATGGTAAGCTTCTGC 59.249 43.478 0.00 0.00 40.05 4.26
2369 2410 4.335874 AGCTTCTGCAGATTGCTTCTATTG 59.664 41.667 28.21 7.52 45.31 1.90
2409 2451 2.308866 AGTATACCCTTGCAGCCACTTT 59.691 45.455 0.00 0.00 0.00 2.66
2455 2497 2.397597 AGTGTCCCAAAATTGTTGGCT 58.602 42.857 0.00 0.00 38.23 4.75
2697 2739 3.697542 CAGGCATTCATTGGAGATGTTGA 59.302 43.478 0.00 0.00 0.00 3.18
2698 2740 3.698040 AGGCATTCATTGGAGATGTTGAC 59.302 43.478 0.00 0.00 0.00 3.18
2699 2741 3.444742 GGCATTCATTGGAGATGTTGACA 59.555 43.478 0.00 0.00 0.00 3.58
2700 2742 4.098960 GGCATTCATTGGAGATGTTGACAT 59.901 41.667 0.00 0.00 39.70 3.06
2701 2743 5.041287 GCATTCATTGGAGATGTTGACATG 58.959 41.667 0.57 0.00 36.57 3.21
2702 2744 5.393787 GCATTCATTGGAGATGTTGACATGT 60.394 40.000 0.00 0.00 36.57 3.21
2703 2745 6.627243 CATTCATTGGAGATGTTGACATGTT 58.373 36.000 0.00 0.00 36.57 2.71
2704 2746 5.632244 TCATTGGAGATGTTGACATGTTG 57.368 39.130 0.00 0.00 36.57 3.33
2705 2747 5.072055 TCATTGGAGATGTTGACATGTTGT 58.928 37.500 0.00 0.00 36.57 3.32
2706 2748 6.237154 TCATTGGAGATGTTGACATGTTGTA 58.763 36.000 0.00 0.00 36.57 2.41
2707 2749 6.372381 TCATTGGAGATGTTGACATGTTGTAG 59.628 38.462 0.00 0.00 36.57 2.74
2708 2750 5.482163 TGGAGATGTTGACATGTTGTAGA 57.518 39.130 0.00 0.00 36.57 2.59
2709 2751 6.053632 TGGAGATGTTGACATGTTGTAGAT 57.946 37.500 0.00 0.00 36.57 1.98
2710 2752 5.876460 TGGAGATGTTGACATGTTGTAGATG 59.124 40.000 0.00 0.00 36.57 2.90
2711 2753 5.220739 GGAGATGTTGACATGTTGTAGATGC 60.221 44.000 0.00 0.00 36.57 3.91
2712 2754 5.494724 AGATGTTGACATGTTGTAGATGCT 58.505 37.500 0.00 0.00 36.57 3.79
2713 2755 6.643388 AGATGTTGACATGTTGTAGATGCTA 58.357 36.000 0.00 0.00 36.57 3.49
2714 2756 6.760298 AGATGTTGACATGTTGTAGATGCTAG 59.240 38.462 0.00 0.00 36.57 3.42
2715 2757 5.178061 TGTTGACATGTTGTAGATGCTAGG 58.822 41.667 0.00 0.00 0.00 3.02
2716 2758 4.406648 TGACATGTTGTAGATGCTAGGG 57.593 45.455 0.00 0.00 0.00 3.53
2717 2759 4.030216 TGACATGTTGTAGATGCTAGGGA 58.970 43.478 0.00 0.00 0.00 4.20
2718 2760 4.469586 TGACATGTTGTAGATGCTAGGGAA 59.530 41.667 0.00 0.00 0.00 3.97
2719 2761 5.045942 TGACATGTTGTAGATGCTAGGGAAA 60.046 40.000 0.00 0.00 0.00 3.13
2720 2762 6.006275 ACATGTTGTAGATGCTAGGGAAAT 57.994 37.500 0.00 0.00 0.00 2.17
2721 2763 7.136822 ACATGTTGTAGATGCTAGGGAAATA 57.863 36.000 0.00 0.00 0.00 1.40
2722 2764 7.749666 ACATGTTGTAGATGCTAGGGAAATAT 58.250 34.615 0.00 0.00 0.00 1.28
2723 2765 7.663081 ACATGTTGTAGATGCTAGGGAAATATG 59.337 37.037 0.00 0.00 0.00 1.78
2724 2766 6.533730 TGTTGTAGATGCTAGGGAAATATGG 58.466 40.000 0.00 0.00 0.00 2.74
2725 2767 6.328934 TGTTGTAGATGCTAGGGAAATATGGA 59.671 38.462 0.00 0.00 0.00 3.41
2726 2768 7.017551 TGTTGTAGATGCTAGGGAAATATGGAT 59.982 37.037 0.00 0.00 0.00 3.41
2727 2769 7.574021 TGTAGATGCTAGGGAAATATGGATT 57.426 36.000 0.00 0.00 0.00 3.01
2765 2838 3.753797 TGACACTGTACAACAACAAAGCA 59.246 39.130 0.00 0.00 0.00 3.91
2844 2917 8.336806 GCAATTTGACTGACATTTGAAAATTGA 58.663 29.630 17.50 0.00 42.16 2.57
2866 2939 6.448852 TGACATTCATGCATGTATAATTGGC 58.551 36.000 25.43 14.00 37.52 4.52
2943 3016 5.302568 TGGAACAAAAACCTCTCTAGTACGA 59.697 40.000 0.00 0.00 31.92 3.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 130 0.695347 CTTTTCTGGGGGAGTCTGCT 59.305 55.000 0.00 0.00 0.00 4.24
167 175 6.884295 CCAGTTTTCTAAACTATGTGGGATGA 59.116 38.462 4.64 0.00 0.00 2.92
271 282 3.316308 CCCTCAATTGCCTACAATACTGC 59.684 47.826 0.00 0.00 45.90 4.40
293 304 3.820777 ACGAAGTTACCTACGAGTGAC 57.179 47.619 0.00 0.00 37.78 3.67
357 368 2.166254 AGCGGAAGTTGCATAAAATGGG 59.834 45.455 0.00 0.00 33.85 4.00
362 373 4.765273 TCATAGAGCGGAAGTTGCATAAA 58.235 39.130 0.00 0.00 33.85 1.40
384 397 8.512138 GCCTGTCATACTGTTAAAGTTGTTTAT 58.488 33.333 0.00 0.00 40.56 1.40
472 487 7.979537 TCCTAATTAGTTGTATGCAGTAGTGTG 59.020 37.037 11.50 0.00 0.00 3.82
576 593 7.164122 AGAAACAACTTTGATGCTAGATGAGA 58.836 34.615 0.00 0.00 0.00 3.27
653 674 2.358247 CCGTTGGGTTCCTCGTGG 60.358 66.667 0.00 0.00 0.00 4.94
749 770 0.179032 TGAACCCAGCAATGACGTGT 60.179 50.000 0.00 0.00 0.00 4.49
750 771 0.518636 CTGAACCCAGCAATGACGTG 59.481 55.000 0.00 0.00 33.07 4.49
851 876 9.626045 GACAAATCGGTTTCAGATTTAGAAAAT 57.374 29.630 0.00 0.00 43.89 1.82
898 923 0.597377 TTACATCATCGCGAGCGCAT 60.597 50.000 16.66 2.31 42.06 4.73
910 937 1.220529 GCAGCTGCGCTATTACATCA 58.779 50.000 25.23 0.00 36.40 3.07
913 940 4.930592 TGCAGCTGCGCTATTACA 57.069 50.000 32.11 10.70 45.83 2.41
952 979 3.119919 ACGCACGTTGTGGAAGTTAAAAA 60.120 39.130 0.00 0.00 33.64 1.94
953 980 2.419324 ACGCACGTTGTGGAAGTTAAAA 59.581 40.909 0.00 0.00 33.64 1.52
954 981 2.008329 ACGCACGTTGTGGAAGTTAAA 58.992 42.857 0.00 0.00 33.64 1.52
955 982 1.328069 CACGCACGTTGTGGAAGTTAA 59.672 47.619 9.34 0.00 33.64 2.01
956 983 0.931702 CACGCACGTTGTGGAAGTTA 59.068 50.000 9.34 0.00 33.64 2.24
957 984 1.719117 CACGCACGTTGTGGAAGTT 59.281 52.632 9.34 0.00 33.64 2.66
958 985 3.405464 CACGCACGTTGTGGAAGT 58.595 55.556 9.34 0.00 33.64 3.01
963 990 4.643385 GTCGCCACGCACGTTGTG 62.643 66.667 10.09 10.09 37.09 3.33
1375 1402 0.163788 CGGATGTTCACACTGCGAAC 59.836 55.000 3.38 3.38 42.52 3.95
1381 1408 3.154710 TCACTAGACGGATGTTCACACT 58.845 45.455 0.00 0.00 0.00 3.55
1393 1420 5.116180 TGAATAAGGGCAAATCACTAGACG 58.884 41.667 0.00 0.00 0.00 4.18
1396 1425 6.239120 CCCATTGAATAAGGGCAAATCACTAG 60.239 42.308 0.00 0.00 36.43 2.57
1397 1426 5.598005 CCCATTGAATAAGGGCAAATCACTA 59.402 40.000 0.00 0.00 36.43 2.74
1406 1435 2.755952 AGGACCCATTGAATAAGGGC 57.244 50.000 0.74 0.00 46.88 5.19
1413 1442 8.518720 TGGAGATAAATATAGGACCCATTGAA 57.481 34.615 0.00 0.00 0.00 2.69
1418 1447 6.272324 CCAGTTGGAGATAAATATAGGACCCA 59.728 42.308 0.00 0.00 37.39 4.51
1536 1568 7.581213 TGATAGCTTTTCTCCTCTTCTCTAG 57.419 40.000 0.00 0.00 0.00 2.43
1537 1569 9.821240 ATATGATAGCTTTTCTCCTCTTCTCTA 57.179 33.333 0.00 0.00 0.00 2.43
1545 1577 9.771534 GTTCAGTAATATGATAGCTTTTCTCCT 57.228 33.333 0.00 0.00 0.00 3.69
1601 1634 8.570488 TGAAGTATACAAAGACAACGACTCTTA 58.430 33.333 5.50 0.00 0.00 2.10
1602 1635 7.431249 TGAAGTATACAAAGACAACGACTCTT 58.569 34.615 5.50 0.00 0.00 2.85
1888 1921 6.639279 CCCTTTTACGAACACAATACCAAAAG 59.361 38.462 0.00 0.00 33.59 2.27
1959 1992 7.642669 CAATTGCGTTCACTCTAATTCCATAT 58.357 34.615 0.00 0.00 0.00 1.78
2038 2071 1.453524 CTTCGAAACGACAGTGCTCAG 59.546 52.381 0.00 0.00 34.89 3.35
2046 2079 1.529438 GGCACAATCTTCGAAACGACA 59.471 47.619 0.00 0.00 34.89 4.35
2049 2082 1.531149 AGTGGCACAATCTTCGAAACG 59.469 47.619 21.41 0.00 44.16 3.60
2309 2342 6.094325 ACAAAACGATTGTGTTTCTGGAGTAA 59.906 34.615 9.86 0.00 41.01 2.24
2311 2344 4.398044 ACAAAACGATTGTGTTTCTGGAGT 59.602 37.500 9.86 0.00 41.01 3.85
2312 2345 4.920376 ACAAAACGATTGTGTTTCTGGAG 58.080 39.130 9.86 0.00 41.01 3.86
2354 2395 9.053840 ACATACAGAATCAATAGAAGCAATCTG 57.946 33.333 2.55 0.00 39.30 2.90
2369 2410 9.413048 GGTATACTGCTCTTAACATACAGAATC 57.587 37.037 2.25 0.00 32.67 2.52
2441 2483 6.857777 TTATTTCACAGCCAACAATTTTGG 57.142 33.333 12.43 12.43 42.37 3.28
2455 2497 7.339721 TGTTTACCAGGACAGTTTTATTTCACA 59.660 33.333 0.00 0.00 0.00 3.58
2697 2739 5.435686 TTTCCCTAGCATCTACAACATGT 57.564 39.130 0.00 0.00 0.00 3.21
2698 2740 7.120285 CCATATTTCCCTAGCATCTACAACATG 59.880 40.741 0.00 0.00 0.00 3.21
2699 2741 7.017551 TCCATATTTCCCTAGCATCTACAACAT 59.982 37.037 0.00 0.00 0.00 2.71
2700 2742 6.328934 TCCATATTTCCCTAGCATCTACAACA 59.671 38.462 0.00 0.00 0.00 3.33
2701 2743 6.769512 TCCATATTTCCCTAGCATCTACAAC 58.230 40.000 0.00 0.00 0.00 3.32
2702 2744 7.574021 ATCCATATTTCCCTAGCATCTACAA 57.426 36.000 0.00 0.00 0.00 2.41
2703 2745 7.574021 AATCCATATTTCCCTAGCATCTACA 57.426 36.000 0.00 0.00 0.00 2.74
2704 2746 8.540388 TGTAATCCATATTTCCCTAGCATCTAC 58.460 37.037 0.00 0.00 0.00 2.59
2705 2747 8.679344 TGTAATCCATATTTCCCTAGCATCTA 57.321 34.615 0.00 0.00 0.00 1.98
2706 2748 7.574021 TGTAATCCATATTTCCCTAGCATCT 57.426 36.000 0.00 0.00 0.00 2.90
2707 2749 9.905713 TTATGTAATCCATATTTCCCTAGCATC 57.094 33.333 0.00 0.00 35.96 3.91
2709 2751 9.905713 GATTATGTAATCCATATTTCCCTAGCA 57.094 33.333 2.06 0.00 35.96 3.49
2710 2752 9.905713 TGATTATGTAATCCATATTTCCCTAGC 57.094 33.333 9.59 0.00 40.98 3.42
2721 2763 8.862085 TGTCATGCAATTGATTATGTAATCCAT 58.138 29.630 10.34 2.79 40.98 3.41
2722 2764 8.136800 GTGTCATGCAATTGATTATGTAATCCA 58.863 33.333 10.34 0.68 40.98 3.41
2723 2765 8.355169 AGTGTCATGCAATTGATTATGTAATCC 58.645 33.333 10.34 0.52 40.98 3.01
2724 2766 9.177304 CAGTGTCATGCAATTGATTATGTAATC 57.823 33.333 10.34 5.93 41.81 1.75
2725 2767 8.689061 ACAGTGTCATGCAATTGATTATGTAAT 58.311 29.630 10.34 1.95 0.00 1.89
2726 2768 8.054152 ACAGTGTCATGCAATTGATTATGTAA 57.946 30.769 10.34 1.43 0.00 2.41
2727 2769 7.628769 ACAGTGTCATGCAATTGATTATGTA 57.371 32.000 10.34 2.46 0.00 2.29
2765 2838 5.061853 CCATCAGAGTAGCATGCAGTTAAT 58.938 41.667 21.98 2.35 0.00 1.40
2828 2901 7.441458 TGCATGAATGTCAATTTTCAAATGTCA 59.559 29.630 0.00 0.00 35.63 3.58
2844 2917 6.408107 TGCCAATTATACATGCATGAATGT 57.592 33.333 32.75 22.94 43.21 2.71
2866 2939 6.803320 ACTGCGAAATCATTGTCTGTTTAATG 59.197 34.615 0.00 0.00 36.00 1.90
3191 3264 6.897259 TCAAGCGCTTCGTTATTAATAACT 57.103 33.333 27.48 11.04 40.27 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.