Multiple sequence alignment - TraesCS7D01G244200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G244200 chr7D 100.000 6570 0 0 1 6570 211874860 211868291 0.000000e+00 12133.0
1 TraesCS7D01G244200 chr7D 95.610 205 7 2 6367 6570 109361819 109361616 1.770000e-85 327.0
2 TraesCS7D01G244200 chr7D 94.764 191 8 2 3821 4009 426750082 426750272 4.980000e-76 296.0
3 TraesCS7D01G244200 chr7D 86.598 97 8 5 1 95 551113419 551113326 1.170000e-17 102.0
4 TraesCS7D01G244200 chr7B 97.165 3951 84 14 2200 6135 189714514 189718451 0.000000e+00 6650.0
5 TraesCS7D01G244200 chr7B 96.995 1531 28 5 645 2162 189712990 189714515 0.000000e+00 2556.0
6 TraesCS7D01G244200 chr7B 97.643 297 7 0 207 503 189712366 189712662 1.630000e-140 510.0
7 TraesCS7D01G244200 chr7B 98.684 152 1 1 509 660 189712826 189712976 1.090000e-67 268.0
8 TraesCS7D01G244200 chr7B 97.115 104 3 0 6281 6384 189718466 189718569 6.770000e-40 176.0
9 TraesCS7D01G244200 chr7B 97.260 73 2 0 138 210 189712364 189712436 2.490000e-24 124.0
10 TraesCS7D01G244200 chr7B 91.765 85 7 0 13 97 58412015 58411931 1.160000e-22 119.0
11 TraesCS7D01G244200 chr7A 98.333 2399 34 4 1686 4079 223679708 223677311 0.000000e+00 4204.0
12 TraesCS7D01G244200 chr7A 92.944 2296 70 25 4123 6383 223677039 223674801 0.000000e+00 3258.0
13 TraesCS7D01G244200 chr7A 95.997 1474 24 8 224 1684 223681245 223679794 0.000000e+00 2362.0
14 TraesCS7D01G244200 chr7A 96.296 54 2 0 157 210 223681245 223681192 9.070000e-14 89.8
15 TraesCS7D01G244200 chr5B 96.481 341 11 1 3677 4017 528265605 528265266 4.450000e-156 562.0
16 TraesCS7D01G244200 chr6D 97.927 193 4 0 6378 6570 345048430 345048622 1.060000e-87 335.0
17 TraesCS7D01G244200 chr6D 84.472 161 18 5 6228 6384 26447203 26447046 1.140000e-32 152.0
18 TraesCS7D01G244200 chr3D 98.930 187 2 0 6384 6570 12368779 12368965 1.060000e-87 335.0
19 TraesCS7D01G244200 chr3D 88.542 96 11 0 1 96 252043683 252043778 4.160000e-22 117.0
20 TraesCS7D01G244200 chr3D 95.238 42 2 0 52 93 400705633 400705592 4.250000e-07 67.6
21 TraesCS7D01G244200 chr4D 98.396 187 3 0 6384 6570 470861462 470861276 4.910000e-86 329.0
22 TraesCS7D01G244200 chr4D 97.849 186 4 0 6385 6570 401787720 401787905 8.220000e-84 322.0
23 TraesCS7D01G244200 chr4D 87.234 94 10 2 1 93 56940539 56940631 9.010000e-19 106.0
24 TraesCS7D01G244200 chr4D 91.304 46 3 1 48 93 29861454 29861410 1.980000e-05 62.1
25 TraesCS7D01G244200 chr5D 98.387 186 3 0 6385 6570 415748993 415748808 1.770000e-85 327.0
26 TraesCS7D01G244200 chr5D 83.660 153 20 3 6235 6384 102041547 102041397 8.880000e-29 139.0
27 TraesCS7D01G244200 chr5A 98.387 186 3 0 6385 6570 683946973 683947158 1.770000e-85 327.0
28 TraesCS7D01G244200 chr5A 82.500 160 16 9 6232 6384 207517000 207517154 5.350000e-26 130.0
29 TraesCS7D01G244200 chr2D 98.387 186 3 0 6385 6570 591307100 591307285 1.770000e-85 327.0
30 TraesCS7D01G244200 chr2D 96.685 181 6 0 3829 4009 416933153 416933333 1.070000e-77 302.0
31 TraesCS7D01G244200 chr2D 87.742 155 17 2 6232 6384 486397601 486397755 5.230000e-41 180.0
32 TraesCS7D01G244200 chr2D 85.897 156 20 2 6232 6386 499974198 499974044 1.470000e-36 165.0
33 TraesCS7D01G244200 chr1B 95.960 198 6 1 6373 6570 136921280 136921085 2.960000e-83 320.0
34 TraesCS7D01G244200 chr1B 97.753 178 3 1 3835 4011 246770882 246770705 8.280000e-79 305.0
35 TraesCS7D01G244200 chr1B 89.474 95 10 0 1 95 377162721 377162815 3.220000e-23 121.0
36 TraesCS7D01G244200 chr1B 88.542 96 9 2 1 95 551496184 551496278 1.500000e-21 115.0
37 TraesCS7D01G244200 chr1B 94.521 73 4 0 21 93 6358199 6358127 5.380000e-21 113.0
38 TraesCS7D01G244200 chr1B 85.455 110 14 2 1 109 453523116 453523224 5.380000e-21 113.0
39 TraesCS7D01G244200 chr1A 96.774 186 4 2 3827 4011 50339307 50339491 6.400000e-80 309.0
40 TraesCS7D01G244200 chr6B 97.222 180 4 1 3837 4016 358303027 358303205 2.980000e-78 303.0
41 TraesCS7D01G244200 chr6B 85.065 154 22 1 6232 6384 248407485 248407332 8.820000e-34 156.0
42 TraesCS7D01G244200 chr4B 96.216 185 6 1 3828 4011 78609330 78609146 1.070000e-77 302.0
43 TraesCS7D01G244200 chr4B 87.755 98 10 2 1 97 358894649 358894745 5.380000e-21 113.0
44 TraesCS7D01G244200 chr2A 84.516 155 22 2 6232 6384 85430889 85430735 1.140000e-32 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G244200 chr7D 211868291 211874860 6569 True 12133.00 12133 100.0000 1 6570 1 chr7D.!!$R2 6569
1 TraesCS7D01G244200 chr7B 189712364 189718569 6205 False 1714.00 6650 97.4770 138 6384 6 chr7B.!!$F1 6246
2 TraesCS7D01G244200 chr7A 223674801 223681245 6444 True 2478.45 4204 95.8925 157 6383 4 chr7A.!!$R1 6226

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
204 205 0.037512 CCCAGATGAGCGCCAGATAG 60.038 60.000 2.29 0.00 0.00 2.08 F
206 207 0.037512 CAGATGAGCGCCAGATAGGG 60.038 60.000 2.29 0.00 38.09 3.53 F
208 209 0.394565 GATGAGCGCCAGATAGGGTT 59.605 55.000 2.29 0.00 38.09 4.11 F
210 211 0.618458 TGAGCGCCAGATAGGGTTTT 59.382 50.000 2.29 0.00 38.09 2.43 F
2176 2500 0.675633 AGCCAAAGACAACATGTGCC 59.324 50.000 0.00 0.00 0.00 5.01 F
2308 2632 1.604185 GCTTGGGATAGCTGAGCTACG 60.604 57.143 17.53 2.75 44.24 3.51 F
3167 3493 2.012673 AGCGAGCTAAATTTGCCTCAG 58.987 47.619 15.69 11.08 0.00 3.35 F
3855 4185 0.921256 AATTAGAGGGCAGGCCTGGT 60.921 55.000 33.46 10.10 36.10 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1047 1235 3.544684 TCTCAGCTTCTTTTTGTCAGCA 58.455 40.909 0.00 0.0 34.49 4.41 R
1113 1301 3.626729 CCTTTGGAGGAAGAATGGCATCT 60.627 47.826 0.00 0.0 46.74 2.90 R
2152 2437 4.082571 GCACATGTTGTCTTTGGCTTAGAT 60.083 41.667 0.00 0.0 0.00 1.98 R
2195 2519 4.526970 TCAAAAGTTCCTCTTGCTGAAGT 58.473 39.130 0.00 0.0 36.40 3.01 R
3284 3610 0.682209 CTGGCATGGGGAGGTCTTTG 60.682 60.000 0.00 0.0 0.00 2.77 R
3855 4185 1.754745 GGAGGACTTCACCACTGCA 59.245 57.895 0.00 0.0 0.00 4.41 R
4723 5289 1.032014 TCCACTTCCAGTTGCTTTGC 58.968 50.000 0.00 0.0 0.00 3.68 R
5732 6301 1.152860 TCAAGCGCCCACCAAAAGA 60.153 52.632 2.29 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.934507 TTTATAAGCGTCAATAAATTTTGGGG 57.065 30.769 0.00 0.00 0.00 4.96
28 29 6.783708 ATAAGCGTCAATAAATTTTGGGGA 57.216 33.333 0.00 0.00 0.00 4.81
29 30 4.450082 AGCGTCAATAAATTTTGGGGAC 57.550 40.909 0.00 0.00 0.00 4.46
30 31 3.119637 AGCGTCAATAAATTTTGGGGACG 60.120 43.478 20.42 20.42 46.55 4.79
31 32 3.765026 CGTCAATAAATTTTGGGGACGG 58.235 45.455 18.50 7.41 41.89 4.79
32 33 3.517602 GTCAATAAATTTTGGGGACGGC 58.482 45.455 0.00 0.00 0.00 5.68
33 34 3.194755 GTCAATAAATTTTGGGGACGGCT 59.805 43.478 0.00 0.00 0.00 5.52
34 35 3.835395 TCAATAAATTTTGGGGACGGCTT 59.165 39.130 0.00 0.00 0.00 4.35
35 36 5.017490 TCAATAAATTTTGGGGACGGCTTA 58.983 37.500 0.00 0.00 0.00 3.09
36 37 5.659079 TCAATAAATTTTGGGGACGGCTTAT 59.341 36.000 0.00 0.00 0.00 1.73
37 38 6.155393 TCAATAAATTTTGGGGACGGCTTATT 59.845 34.615 0.00 0.00 0.00 1.40
38 39 4.901197 AAATTTTGGGGACGGCTTATTT 57.099 36.364 0.00 0.00 0.00 1.40
39 40 4.901197 AATTTTGGGGACGGCTTATTTT 57.099 36.364 0.00 0.00 0.00 1.82
40 41 4.901197 ATTTTGGGGACGGCTTATTTTT 57.099 36.364 0.00 0.00 0.00 1.94
57 58 2.949177 TTTTAAGCTGTGGAGAGGCA 57.051 45.000 0.00 0.00 0.00 4.75
58 59 2.479566 TTTAAGCTGTGGAGAGGCAG 57.520 50.000 0.00 0.00 35.93 4.85
64 65 2.706339 CTGTGGAGAGGCAGCTTATT 57.294 50.000 0.00 0.00 0.00 1.40
65 66 2.996631 CTGTGGAGAGGCAGCTTATTT 58.003 47.619 0.00 0.00 0.00 1.40
66 67 3.350833 CTGTGGAGAGGCAGCTTATTTT 58.649 45.455 0.00 0.00 0.00 1.82
67 68 3.760684 CTGTGGAGAGGCAGCTTATTTTT 59.239 43.478 0.00 0.00 0.00 1.94
86 87 5.585820 TTTTTAAGCCGTCCAAAAGAACT 57.414 34.783 0.00 0.00 0.00 3.01
87 88 4.561735 TTTAAGCCGTCCAAAAGAACTG 57.438 40.909 0.00 0.00 0.00 3.16
88 89 1.318576 AAGCCGTCCAAAAGAACTGG 58.681 50.000 0.00 0.00 35.05 4.00
89 90 1.172812 AGCCGTCCAAAAGAACTGGC 61.173 55.000 0.00 0.00 38.96 4.85
90 91 1.956802 CCGTCCAAAAGAACTGGCC 59.043 57.895 0.00 0.00 33.63 5.36
91 92 1.524008 CCGTCCAAAAGAACTGGCCC 61.524 60.000 0.00 0.00 33.63 5.80
92 93 0.537371 CGTCCAAAAGAACTGGCCCT 60.537 55.000 0.00 0.00 33.63 5.19
93 94 1.271163 CGTCCAAAAGAACTGGCCCTA 60.271 52.381 0.00 0.00 33.63 3.53
94 95 2.812613 CGTCCAAAAGAACTGGCCCTAA 60.813 50.000 0.00 0.00 33.63 2.69
95 96 2.820197 GTCCAAAAGAACTGGCCCTAAG 59.180 50.000 0.00 0.00 33.63 2.18
96 97 2.445525 TCCAAAAGAACTGGCCCTAAGT 59.554 45.455 0.00 0.00 33.63 2.24
97 98 2.820197 CCAAAAGAACTGGCCCTAAGTC 59.180 50.000 0.00 0.00 0.00 3.01
98 99 2.820197 CAAAAGAACTGGCCCTAAGTCC 59.180 50.000 0.00 0.00 0.00 3.85
99 100 0.613777 AAGAACTGGCCCTAAGTCCG 59.386 55.000 0.00 0.00 0.00 4.79
100 101 1.221021 GAACTGGCCCTAAGTCCGG 59.779 63.158 0.00 0.00 34.90 5.14
101 102 1.229400 AACTGGCCCTAAGTCCGGA 60.229 57.895 0.00 0.00 33.05 5.14
102 103 1.265454 AACTGGCCCTAAGTCCGGAG 61.265 60.000 3.06 0.00 33.05 4.63
116 117 4.060038 GGAGGTCGCGGGTTCGAA 62.060 66.667 6.13 0.00 40.43 3.71
117 118 2.183555 GAGGTCGCGGGTTCGAAT 59.816 61.111 6.13 0.00 40.43 3.34
118 119 1.877165 GAGGTCGCGGGTTCGAATC 60.877 63.158 6.13 0.00 40.43 2.52
119 120 2.125832 GGTCGCGGGTTCGAATCA 60.126 61.111 11.19 0.00 40.43 2.57
120 121 2.165301 GGTCGCGGGTTCGAATCAG 61.165 63.158 11.19 7.55 40.43 2.90
121 122 1.445582 GTCGCGGGTTCGAATCAGT 60.446 57.895 11.19 0.00 40.43 3.41
122 123 1.012486 GTCGCGGGTTCGAATCAGTT 61.012 55.000 11.19 0.00 40.43 3.16
123 124 0.734942 TCGCGGGTTCGAATCAGTTC 60.735 55.000 11.19 0.00 39.00 3.01
124 125 1.693083 CGCGGGTTCGAATCAGTTCC 61.693 60.000 11.19 0.92 39.00 3.62
125 126 0.672401 GCGGGTTCGAATCAGTTCCA 60.672 55.000 11.19 0.00 39.00 3.53
126 127 1.359848 CGGGTTCGAATCAGTTCCAG 58.640 55.000 11.19 0.00 39.00 3.86
127 128 1.087501 GGGTTCGAATCAGTTCCAGC 58.912 55.000 11.19 0.00 0.00 4.85
128 129 0.721718 GGTTCGAATCAGTTCCAGCG 59.278 55.000 2.82 0.00 0.00 5.18
129 130 0.095417 GTTCGAATCAGTTCCAGCGC 59.905 55.000 0.00 0.00 0.00 5.92
130 131 1.351430 TTCGAATCAGTTCCAGCGCG 61.351 55.000 0.00 0.00 0.00 6.86
131 132 2.094659 CGAATCAGTTCCAGCGCGT 61.095 57.895 8.43 0.00 0.00 6.01
132 133 1.710339 GAATCAGTTCCAGCGCGTC 59.290 57.895 8.43 0.00 0.00 5.19
133 134 2.014093 GAATCAGTTCCAGCGCGTCG 62.014 60.000 8.43 0.00 0.00 5.12
134 135 3.989698 ATCAGTTCCAGCGCGTCGG 62.990 63.158 8.43 9.00 0.00 4.79
136 137 4.295119 AGTTCCAGCGCGTCGGTT 62.295 61.111 8.43 0.00 34.62 4.44
165 166 3.054276 TGCGGTTTTAAACACAGAACG 57.946 42.857 10.14 4.15 0.00 3.95
201 202 4.166888 GCCCAGATGAGCGCCAGA 62.167 66.667 2.29 0.00 0.00 3.86
202 203 2.827423 CCCAGATGAGCGCCAGAT 59.173 61.111 2.29 0.00 0.00 2.90
203 204 2.052779 CCCAGATGAGCGCCAGATA 58.947 57.895 2.29 0.00 0.00 1.98
204 205 0.037512 CCCAGATGAGCGCCAGATAG 60.038 60.000 2.29 0.00 0.00 2.08
205 206 0.037512 CCAGATGAGCGCCAGATAGG 60.038 60.000 2.29 0.00 41.84 2.57
206 207 0.037512 CAGATGAGCGCCAGATAGGG 60.038 60.000 2.29 0.00 38.09 3.53
207 208 0.470833 AGATGAGCGCCAGATAGGGT 60.471 55.000 2.29 0.00 38.09 4.34
208 209 0.394565 GATGAGCGCCAGATAGGGTT 59.605 55.000 2.29 0.00 38.09 4.11
209 210 0.839946 ATGAGCGCCAGATAGGGTTT 59.160 50.000 2.29 0.00 38.09 3.27
210 211 0.618458 TGAGCGCCAGATAGGGTTTT 59.382 50.000 2.29 0.00 38.09 2.43
211 212 1.004277 TGAGCGCCAGATAGGGTTTTT 59.996 47.619 2.29 0.00 38.09 1.94
231 232 5.765072 TTTTGCGGTTTTAAACACAGAAC 57.235 34.783 10.14 0.00 0.00 3.01
232 233 4.436242 TTGCGGTTTTAAACACAGAACA 57.564 36.364 10.14 0.00 0.00 3.18
233 234 4.436242 TGCGGTTTTAAACACAGAACAA 57.564 36.364 10.14 0.00 0.00 2.83
234 235 4.806330 TGCGGTTTTAAACACAGAACAAA 58.194 34.783 10.14 0.00 0.00 2.83
235 236 5.227908 TGCGGTTTTAAACACAGAACAAAA 58.772 33.333 10.14 0.00 0.00 2.44
236 237 5.869888 TGCGGTTTTAAACACAGAACAAAAT 59.130 32.000 10.14 0.00 0.00 1.82
237 238 7.033791 TGCGGTTTTAAACACAGAACAAAATA 58.966 30.769 10.14 0.00 0.00 1.40
238 239 7.009357 TGCGGTTTTAAACACAGAACAAAATAC 59.991 33.333 10.14 0.00 0.00 1.89
239 240 7.515528 GCGGTTTTAAACACAGAACAAAATACC 60.516 37.037 10.14 0.00 0.00 2.73
240 241 7.703197 CGGTTTTAAACACAGAACAAAATACCT 59.297 33.333 10.14 0.00 0.00 3.08
246 247 7.687941 AACACAGAACAAAATACCTAGATGG 57.312 36.000 0.00 0.00 42.93 3.51
247 248 6.180472 ACACAGAACAAAATACCTAGATGGG 58.820 40.000 0.00 0.00 41.11 4.00
248 249 5.066505 CACAGAACAAAATACCTAGATGGGC 59.933 44.000 0.00 0.00 41.11 5.36
249 250 5.044846 ACAGAACAAAATACCTAGATGGGCT 60.045 40.000 0.00 0.00 41.11 5.19
250 251 5.297776 CAGAACAAAATACCTAGATGGGCTG 59.702 44.000 0.00 0.00 41.11 4.85
251 252 4.170468 ACAAAATACCTAGATGGGCTGG 57.830 45.455 0.00 0.00 41.11 4.85
252 253 2.887152 CAAAATACCTAGATGGGCTGGC 59.113 50.000 0.00 0.00 41.11 4.85
253 254 1.068121 AATACCTAGATGGGCTGGCC 58.932 55.000 14.23 14.23 41.11 5.36
425 426 3.447634 CTGTCTCTCGCCTCGCTCG 62.448 68.421 0.00 0.00 0.00 5.03
636 795 2.793278 ACGAAGTTTTGGGATGCAAC 57.207 45.000 0.00 0.00 37.78 4.17
660 819 5.287752 CGGAATGATGCAATTCTTTGACTTG 59.712 40.000 10.23 0.00 36.87 3.16
956 1144 4.081862 CCATTTGATGACCTGTTTGATGCT 60.082 41.667 0.00 0.00 0.00 3.79
1047 1235 2.102588 AGCTCTACAACGTTTGTCAGGT 59.897 45.455 0.00 3.82 44.12 4.00
1711 1996 6.945636 TCTTAACCCTTCTCATTTCCACTA 57.054 37.500 0.00 0.00 0.00 2.74
1714 1999 3.891049 ACCCTTCTCATTTCCACTATGC 58.109 45.455 0.00 0.00 0.00 3.14
2055 2340 3.441496 TCTGCAAGTTGCTTTTTCCAG 57.559 42.857 27.17 14.86 45.31 3.86
2152 2437 6.852420 GTAGAATACAGGAGGGCATATGTA 57.148 41.667 4.29 0.05 42.43 2.29
2162 2486 4.019321 GGAGGGCATATGTATCTAAGCCAA 60.019 45.833 4.29 0.00 43.72 4.52
2163 2487 5.514834 GGAGGGCATATGTATCTAAGCCAAA 60.515 44.000 4.29 0.00 43.72 3.28
2164 2488 5.564550 AGGGCATATGTATCTAAGCCAAAG 58.435 41.667 4.29 0.00 43.72 2.77
2165 2489 5.310594 AGGGCATATGTATCTAAGCCAAAGA 59.689 40.000 4.29 0.00 43.72 2.52
2166 2490 5.412904 GGGCATATGTATCTAAGCCAAAGAC 59.587 44.000 4.29 0.00 43.72 3.01
2167 2491 5.997746 GGCATATGTATCTAAGCCAAAGACA 59.002 40.000 4.29 0.00 41.63 3.41
2168 2492 6.486657 GGCATATGTATCTAAGCCAAAGACAA 59.513 38.462 4.29 0.00 41.63 3.18
2169 2493 7.355778 GCATATGTATCTAAGCCAAAGACAAC 58.644 38.462 4.29 0.00 0.00 3.32
2170 2494 7.012327 GCATATGTATCTAAGCCAAAGACAACA 59.988 37.037 4.29 0.00 30.88 3.33
2171 2495 9.060347 CATATGTATCTAAGCCAAAGACAACAT 57.940 33.333 0.00 11.73 37.05 2.71
2172 2496 6.741992 TGTATCTAAGCCAAAGACAACATG 57.258 37.500 0.00 0.00 0.00 3.21
2173 2497 6.237901 TGTATCTAAGCCAAAGACAACATGT 58.762 36.000 0.00 0.00 0.00 3.21
2174 2498 5.633830 ATCTAAGCCAAAGACAACATGTG 57.366 39.130 0.00 0.00 0.00 3.21
2175 2499 2.514205 AAGCCAAAGACAACATGTGC 57.486 45.000 0.00 0.00 0.00 4.57
2176 2500 0.675633 AGCCAAAGACAACATGTGCC 59.324 50.000 0.00 0.00 0.00 5.01
2177 2501 0.675633 GCCAAAGACAACATGTGCCT 59.324 50.000 0.00 0.00 0.00 4.75
2178 2502 1.885887 GCCAAAGACAACATGTGCCTA 59.114 47.619 0.00 0.00 0.00 3.93
2179 2503 2.295909 GCCAAAGACAACATGTGCCTAA 59.704 45.455 0.00 0.00 0.00 2.69
2180 2504 3.243704 GCCAAAGACAACATGTGCCTAAA 60.244 43.478 0.00 0.00 0.00 1.85
2181 2505 4.561326 GCCAAAGACAACATGTGCCTAAAT 60.561 41.667 0.00 0.00 0.00 1.40
2182 2506 5.540911 CCAAAGACAACATGTGCCTAAATT 58.459 37.500 0.00 0.00 0.00 1.82
2183 2507 6.686630 CCAAAGACAACATGTGCCTAAATTA 58.313 36.000 0.00 0.00 0.00 1.40
2184 2508 6.808212 CCAAAGACAACATGTGCCTAAATTAG 59.192 38.462 0.00 0.00 0.00 1.73
2185 2509 7.370383 CAAAGACAACATGTGCCTAAATTAGT 58.630 34.615 0.00 0.00 0.00 2.24
2186 2510 8.511321 CAAAGACAACATGTGCCTAAATTAGTA 58.489 33.333 0.00 0.00 0.00 1.82
2187 2511 8.807948 AAGACAACATGTGCCTAAATTAGTAT 57.192 30.769 0.00 0.00 0.00 2.12
2188 2512 8.213518 AGACAACATGTGCCTAAATTAGTATG 57.786 34.615 0.00 0.00 0.00 2.39
2189 2513 8.046708 AGACAACATGTGCCTAAATTAGTATGA 58.953 33.333 0.00 0.00 0.00 2.15
2190 2514 7.985476 ACAACATGTGCCTAAATTAGTATGAC 58.015 34.615 0.00 0.00 0.00 3.06
2191 2515 7.829211 ACAACATGTGCCTAAATTAGTATGACT 59.171 33.333 0.00 0.00 0.00 3.41
2192 2516 9.325198 CAACATGTGCCTAAATTAGTATGACTA 57.675 33.333 0.00 0.00 0.00 2.59
2308 2632 1.604185 GCTTGGGATAGCTGAGCTACG 60.604 57.143 17.53 2.75 44.24 3.51
2693 3018 2.634940 TCTCTTGCACTAGTTTGGCTCT 59.365 45.455 0.00 0.00 0.00 4.09
2875 3200 5.309323 TGTTATGGCAAGTTCAATGCTAC 57.691 39.130 0.00 0.00 43.34 3.58
3167 3493 2.012673 AGCGAGCTAAATTTGCCTCAG 58.987 47.619 15.69 11.08 0.00 3.35
3284 3610 4.837050 GCATTACACACGAACGTAAAAGAC 59.163 41.667 0.00 0.00 31.74 3.01
3464 3794 7.649533 TTTATACCGAGTCTCATTACCAAGA 57.350 36.000 0.00 0.00 0.00 3.02
3500 3830 7.220108 GTCAACAAAACCATGTTTCACTCTAAC 59.780 37.037 0.00 0.00 41.44 2.34
3855 4185 0.921256 AATTAGAGGGCAGGCCTGGT 60.921 55.000 33.46 10.10 36.10 4.00
3924 4254 1.744368 AGCCTCTCTGCATTGCACG 60.744 57.895 7.38 4.59 33.79 5.34
4154 4717 6.540551 CAGGGTTCTAAGGATTTCTAAGAAGC 59.459 42.308 0.00 0.00 41.58 3.86
4527 5090 4.595986 ACATACTACCCATGTTTGGAACC 58.404 43.478 0.00 0.00 46.92 3.62
4531 5094 3.831911 ACTACCCATGTTTGGAACCAATG 59.168 43.478 7.12 3.30 46.92 2.82
4681 5247 4.227197 ACATCATAAGAGGGTACAGGAGG 58.773 47.826 0.00 0.00 0.00 4.30
4897 5463 7.536895 TCTCGTAGTCTACAAGTTCTATGTC 57.463 40.000 10.59 0.00 32.27 3.06
4906 5472 7.813148 GTCTACAAGTTCTATGTCTGTAAAGCA 59.187 37.037 0.00 0.00 32.27 3.91
5017 5583 3.165071 ACAAGGCCAAAGTAATTCTGGG 58.835 45.455 5.01 0.00 0.00 4.45
5112 5678 6.840780 AGAAGGATTTAGGGTCAACATTTG 57.159 37.500 0.00 0.00 0.00 2.32
5161 5727 2.839228 AGCTAGAGGAAATGAGGTGGT 58.161 47.619 0.00 0.00 0.00 4.16
5624 6190 8.637099 TCATAACATTGTTGAATTCTGGTTCAA 58.363 29.630 12.30 5.62 43.66 2.69
5732 6301 5.483685 TGGTGTTTGCTTAGATAGTGAGT 57.516 39.130 0.00 0.00 0.00 3.41
5745 6314 0.535102 AGTGAGTCTTTTGGTGGGCG 60.535 55.000 0.00 0.00 0.00 6.13
5767 6336 4.742167 CGCTTGAGTCTCGTATTCATGAAT 59.258 41.667 23.75 23.75 34.93 2.57
5770 6339 7.115520 CGCTTGAGTCTCGTATTCATGAATTAT 59.884 37.037 25.26 5.76 32.50 1.28
5826 6395 6.899089 ACAGATGGTTGACAATGATATGGTA 58.101 36.000 0.00 0.00 0.00 3.25
5827 6396 7.345691 ACAGATGGTTGACAATGATATGGTAA 58.654 34.615 0.00 0.00 0.00 2.85
5828 6397 7.500227 ACAGATGGTTGACAATGATATGGTAAG 59.500 37.037 0.00 0.00 0.00 2.34
5885 6455 2.439507 AGAAGTGGAAGAAACTGCCTCA 59.560 45.455 0.00 0.00 28.35 3.86
5939 6509 1.160329 GGAATCATCAACGCCGAGGG 61.160 60.000 0.00 0.00 0.00 4.30
5940 6510 1.153168 AATCATCAACGCCGAGGGG 60.153 57.895 4.54 4.54 0.00 4.79
5941 6511 2.608970 AATCATCAACGCCGAGGGGG 62.609 60.000 10.95 2.94 41.67 5.40
5961 6531 0.319555 TCGGCTTGACAAGGTTCGAG 60.320 55.000 16.80 0.00 0.00 4.04
5977 6547 2.122547 AGACTTCGTGGGTGGGGT 60.123 61.111 0.00 0.00 0.00 4.95
5978 6548 1.765597 GAGACTTCGTGGGTGGGGTT 61.766 60.000 0.00 0.00 0.00 4.11
5998 6568 5.321927 GGTTGATAATAAATGGGGTCCGAT 58.678 41.667 0.00 0.00 0.00 4.18
6007 6577 1.144936 GGGGTCCGATCAAGCTCAG 59.855 63.158 0.00 0.00 0.00 3.35
6042 6616 0.320374 GGAGGTTGACATCACGGACA 59.680 55.000 0.00 0.00 0.00 4.02
6053 6627 3.888930 ACATCACGGACACCTTGATTTTT 59.111 39.130 6.97 0.00 39.04 1.94
6058 6632 1.418373 GACACCTTGATTTTTGCCGC 58.582 50.000 0.00 0.00 0.00 6.53
6120 6694 1.287730 CCGCGCTATTCTGGAGCATC 61.288 60.000 5.56 0.00 40.09 3.91
6136 6710 4.322349 GGAGCATCTTCAAGTACACACTCT 60.322 45.833 0.00 0.00 30.91 3.24
6137 6711 4.815269 AGCATCTTCAAGTACACACTCTC 58.185 43.478 0.00 0.00 32.29 3.20
6157 6731 4.636435 CCTTCACCCCAACGCGGT 62.636 66.667 12.47 0.00 0.00 5.68
6195 6769 0.674581 TGCTCATTTGGACGAGGCAG 60.675 55.000 0.00 0.00 0.00 4.85
6208 6782 0.257039 GAGGCAGTCATTGGGGTGAT 59.743 55.000 0.00 0.00 0.00 3.06
6226 6800 0.249120 ATGTCGTCGCTGATGGGAAA 59.751 50.000 0.00 0.00 36.89 3.13
6228 6802 1.338674 TGTCGTCGCTGATGGGAAATT 60.339 47.619 0.00 0.00 36.89 1.82
6229 6803 1.062587 GTCGTCGCTGATGGGAAATTG 59.937 52.381 0.00 0.00 36.89 2.32
6230 6804 1.066502 TCGTCGCTGATGGGAAATTGA 60.067 47.619 0.00 0.00 36.89 2.57
6231 6805 1.942657 CGTCGCTGATGGGAAATTGAT 59.057 47.619 0.00 0.00 36.89 2.57
6232 6806 3.130633 CGTCGCTGATGGGAAATTGATA 58.869 45.455 0.00 0.00 36.89 2.15
6233 6807 3.059597 CGTCGCTGATGGGAAATTGATAC 60.060 47.826 0.00 0.00 36.89 2.24
6384 6985 9.062524 AGCTATATTAGAGATACCTATTCTGCG 57.937 37.037 0.00 0.00 0.00 5.18
6385 6986 7.806014 GCTATATTAGAGATACCTATTCTGCGC 59.194 40.741 0.00 0.00 0.00 6.09
6386 6987 2.999507 AGAGATACCTATTCTGCGCG 57.000 50.000 0.00 0.00 0.00 6.86
6387 6988 2.505405 AGAGATACCTATTCTGCGCGA 58.495 47.619 12.10 0.00 0.00 5.87
6388 6989 2.885266 AGAGATACCTATTCTGCGCGAA 59.115 45.455 12.10 15.06 35.78 4.70
6389 6990 3.508012 AGAGATACCTATTCTGCGCGAAT 59.492 43.478 23.67 23.67 44.35 3.34
6390 6991 3.839293 AGATACCTATTCTGCGCGAATC 58.161 45.455 23.80 13.64 41.36 2.52
6391 6992 3.255888 AGATACCTATTCTGCGCGAATCA 59.744 43.478 23.80 13.39 41.36 2.57
6392 6993 2.309528 ACCTATTCTGCGCGAATCAA 57.690 45.000 23.80 11.81 41.36 2.57
6393 6994 1.933853 ACCTATTCTGCGCGAATCAAC 59.066 47.619 23.80 0.00 41.36 3.18
6394 6995 1.261619 CCTATTCTGCGCGAATCAACC 59.738 52.381 23.80 0.00 41.36 3.77
6395 6996 2.205074 CTATTCTGCGCGAATCAACCT 58.795 47.619 23.80 8.90 41.36 3.50
6396 6997 0.729116 ATTCTGCGCGAATCAACCTG 59.271 50.000 12.10 0.00 37.85 4.00
6397 6998 0.602638 TTCTGCGCGAATCAACCTGT 60.603 50.000 12.10 0.00 0.00 4.00
6398 6999 1.133253 CTGCGCGAATCAACCTGTG 59.867 57.895 12.10 0.00 0.00 3.66
6399 7000 2.244436 CTGCGCGAATCAACCTGTGG 62.244 60.000 12.10 0.00 0.00 4.17
6400 7001 2.325082 GCGCGAATCAACCTGTGGT 61.325 57.895 12.10 0.00 37.65 4.16
6412 7013 3.703001 ACCTGTGGTTGAGATGGTTAG 57.297 47.619 0.00 0.00 27.29 2.34
6413 7014 2.305927 ACCTGTGGTTGAGATGGTTAGG 59.694 50.000 0.00 0.00 27.29 2.69
6414 7015 2.305927 CCTGTGGTTGAGATGGTTAGGT 59.694 50.000 0.00 0.00 0.00 3.08
6415 7016 3.338249 CTGTGGTTGAGATGGTTAGGTG 58.662 50.000 0.00 0.00 0.00 4.00
6416 7017 2.039746 TGTGGTTGAGATGGTTAGGTGG 59.960 50.000 0.00 0.00 0.00 4.61
6417 7018 2.304761 GTGGTTGAGATGGTTAGGTGGA 59.695 50.000 0.00 0.00 0.00 4.02
6418 7019 2.304761 TGGTTGAGATGGTTAGGTGGAC 59.695 50.000 0.00 0.00 0.00 4.02
6419 7020 2.304761 GGTTGAGATGGTTAGGTGGACA 59.695 50.000 0.00 0.00 0.00 4.02
6420 7021 3.600388 GTTGAGATGGTTAGGTGGACAG 58.400 50.000 0.00 0.00 0.00 3.51
6421 7022 2.902608 TGAGATGGTTAGGTGGACAGT 58.097 47.619 0.00 0.00 0.00 3.55
6422 7023 2.567169 TGAGATGGTTAGGTGGACAGTG 59.433 50.000 0.00 0.00 0.00 3.66
6423 7024 1.909302 AGATGGTTAGGTGGACAGTGG 59.091 52.381 0.00 0.00 0.00 4.00
6424 7025 1.628846 GATGGTTAGGTGGACAGTGGT 59.371 52.381 0.00 0.00 0.00 4.16
6425 7026 2.402182 TGGTTAGGTGGACAGTGGTA 57.598 50.000 0.00 0.00 0.00 3.25
6426 7027 2.910544 TGGTTAGGTGGACAGTGGTAT 58.089 47.619 0.00 0.00 0.00 2.73
6427 7028 2.835764 TGGTTAGGTGGACAGTGGTATC 59.164 50.000 0.00 0.00 0.00 2.24
6428 7029 2.169978 GGTTAGGTGGACAGTGGTATCC 59.830 54.545 0.00 0.00 35.37 2.59
6429 7030 2.169978 GTTAGGTGGACAGTGGTATCCC 59.830 54.545 0.00 0.00 33.69 3.85
6430 7031 0.417841 AGGTGGACAGTGGTATCCCT 59.582 55.000 0.00 0.00 33.69 4.20
6431 7032 1.649633 AGGTGGACAGTGGTATCCCTA 59.350 52.381 0.00 0.00 33.69 3.53
6432 7033 2.045326 AGGTGGACAGTGGTATCCCTAA 59.955 50.000 0.00 0.00 33.69 2.69
6433 7034 2.169978 GGTGGACAGTGGTATCCCTAAC 59.830 54.545 0.00 0.00 33.69 2.34
6434 7035 2.169978 GTGGACAGTGGTATCCCTAACC 59.830 54.545 0.00 0.00 37.53 2.85
6435 7036 1.767088 GGACAGTGGTATCCCTAACCC 59.233 57.143 0.00 0.00 36.06 4.11
6436 7037 2.474112 GACAGTGGTATCCCTAACCCA 58.526 52.381 0.00 0.00 36.06 4.51
6437 7038 2.169978 GACAGTGGTATCCCTAACCCAC 59.830 54.545 0.00 0.00 46.17 4.61
6438 7039 1.489230 CAGTGGTATCCCTAACCCACC 59.511 57.143 4.15 0.00 46.84 4.61
6439 7040 1.081513 AGTGGTATCCCTAACCCACCA 59.918 52.381 4.15 0.00 46.84 4.17
6440 7041 1.489230 GTGGTATCCCTAACCCACCAG 59.511 57.143 0.00 0.00 41.20 4.00
6441 7042 1.137697 GGTATCCCTAACCCACCAGG 58.862 60.000 0.00 0.00 43.78 4.45
6457 7058 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
6458 7059 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
6459 7060 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
6460 7061 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
6461 7062 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
6462 7063 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
6463 7064 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
6464 7065 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
6465 7066 2.016318 CAAATCCTGGTGCTCGCATTA 58.984 47.619 0.00 0.00 0.00 1.90
6466 7067 2.620115 CAAATCCTGGTGCTCGCATTAT 59.380 45.455 0.00 0.00 0.00 1.28
6467 7068 2.645838 ATCCTGGTGCTCGCATTATT 57.354 45.000 0.00 0.00 0.00 1.40
6468 7069 1.953559 TCCTGGTGCTCGCATTATTC 58.046 50.000 0.00 0.00 0.00 1.75
6469 7070 0.947244 CCTGGTGCTCGCATTATTCC 59.053 55.000 0.00 0.00 0.00 3.01
6470 7071 1.475751 CCTGGTGCTCGCATTATTCCT 60.476 52.381 0.00 0.00 0.00 3.36
6471 7072 1.600957 CTGGTGCTCGCATTATTCCTG 59.399 52.381 0.00 0.00 0.00 3.86
6472 7073 0.947244 GGTGCTCGCATTATTCCTGG 59.053 55.000 0.00 0.00 0.00 4.45
6473 7074 1.475034 GGTGCTCGCATTATTCCTGGA 60.475 52.381 0.00 0.00 0.00 3.86
6474 7075 2.498167 GTGCTCGCATTATTCCTGGAT 58.502 47.619 0.00 0.00 0.00 3.41
6475 7076 2.880890 GTGCTCGCATTATTCCTGGATT 59.119 45.455 0.00 0.00 0.00 3.01
6476 7077 3.316308 GTGCTCGCATTATTCCTGGATTT 59.684 43.478 0.00 0.00 0.00 2.17
6477 7078 4.515191 GTGCTCGCATTATTCCTGGATTTA 59.485 41.667 0.00 0.00 0.00 1.40
6478 7079 5.182001 GTGCTCGCATTATTCCTGGATTTAT 59.818 40.000 0.00 0.00 0.00 1.40
6479 7080 5.769662 TGCTCGCATTATTCCTGGATTTATT 59.230 36.000 0.00 0.00 0.00 1.40
6480 7081 6.265196 TGCTCGCATTATTCCTGGATTTATTT 59.735 34.615 0.00 0.00 0.00 1.40
6481 7082 6.803807 GCTCGCATTATTCCTGGATTTATTTC 59.196 38.462 0.00 0.00 0.00 2.17
6482 7083 7.522073 GCTCGCATTATTCCTGGATTTATTTCA 60.522 37.037 0.00 0.00 0.00 2.69
6483 7084 7.874940 TCGCATTATTCCTGGATTTATTTCAG 58.125 34.615 0.00 0.00 0.00 3.02
6484 7085 7.040478 TCGCATTATTCCTGGATTTATTTCAGG 60.040 37.037 0.00 0.00 46.91 3.86
6492 7093 6.076981 CTGGATTTATTTCAGGATTTCCGG 57.923 41.667 0.00 0.00 42.08 5.14
6493 7094 4.340950 TGGATTTATTTCAGGATTTCCGGC 59.659 41.667 0.00 0.00 42.08 6.13
6494 7095 4.537015 GATTTATTTCAGGATTTCCGGCG 58.463 43.478 0.00 0.00 42.08 6.46
6495 7096 2.992124 TATTTCAGGATTTCCGGCGA 57.008 45.000 9.30 0.00 42.08 5.54
6496 7097 2.348411 ATTTCAGGATTTCCGGCGAT 57.652 45.000 9.30 0.00 42.08 4.58
6497 7098 1.378531 TTTCAGGATTTCCGGCGATG 58.621 50.000 9.30 0.00 42.08 3.84
6498 7099 1.095228 TTCAGGATTTCCGGCGATGC 61.095 55.000 9.30 0.00 42.08 3.91
6499 7100 2.588877 AGGATTTCCGGCGATGCG 60.589 61.111 9.30 0.00 42.08 4.73
6510 7111 2.787249 CGATGCGCTTTCAGTGGG 59.213 61.111 9.73 0.00 0.00 4.61
6511 7112 1.741401 CGATGCGCTTTCAGTGGGA 60.741 57.895 9.73 0.00 0.00 4.37
6512 7113 1.699656 CGATGCGCTTTCAGTGGGAG 61.700 60.000 9.73 0.00 0.00 4.30
6513 7114 1.372087 GATGCGCTTTCAGTGGGAGG 61.372 60.000 9.73 0.00 0.00 4.30
6514 7115 1.841302 ATGCGCTTTCAGTGGGAGGA 61.841 55.000 9.73 0.00 0.00 3.71
6515 7116 1.743252 GCGCTTTCAGTGGGAGGAG 60.743 63.158 0.00 0.00 0.00 3.69
6516 7117 1.975327 CGCTTTCAGTGGGAGGAGA 59.025 57.895 0.00 0.00 0.00 3.71
6517 7118 0.390472 CGCTTTCAGTGGGAGGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
6518 7119 0.390472 GCTTTCAGTGGGAGGAGACG 60.390 60.000 0.00 0.00 0.00 4.18
6519 7120 0.969894 CTTTCAGTGGGAGGAGACGT 59.030 55.000 0.00 0.00 0.00 4.34
6520 7121 1.344763 CTTTCAGTGGGAGGAGACGTT 59.655 52.381 0.00 0.00 0.00 3.99
6521 7122 1.420430 TTCAGTGGGAGGAGACGTTT 58.580 50.000 0.00 0.00 0.00 3.60
6522 7123 0.966920 TCAGTGGGAGGAGACGTTTC 59.033 55.000 0.00 0.00 0.00 2.78
6523 7124 0.037232 CAGTGGGAGGAGACGTTTCC 60.037 60.000 17.16 17.16 37.52 3.13
6524 7125 1.080025 GTGGGAGGAGACGTTTCCG 60.080 63.158 18.59 0.00 42.29 4.30
6544 7145 2.353607 GACGACGAGGCGCCTATG 60.354 66.667 32.97 27.02 33.86 2.23
6545 7146 3.825833 GACGACGAGGCGCCTATGG 62.826 68.421 32.97 23.64 33.86 2.74
6546 7147 3.900892 CGACGAGGCGCCTATGGT 61.901 66.667 32.97 26.91 0.00 3.55
6547 7148 2.279517 GACGAGGCGCCTATGGTG 60.280 66.667 32.97 18.94 36.10 4.17
6548 7149 3.792053 GACGAGGCGCCTATGGTGG 62.792 68.421 32.97 16.50 33.18 4.61
6560 7161 4.073293 CCTATGGTGGCTTCGTAAATCT 57.927 45.455 0.00 0.00 0.00 2.40
6561 7162 4.058817 CCTATGGTGGCTTCGTAAATCTC 58.941 47.826 0.00 0.00 0.00 2.75
6562 7163 3.627395 ATGGTGGCTTCGTAAATCTCA 57.373 42.857 0.00 0.00 0.00 3.27
6563 7164 3.410631 TGGTGGCTTCGTAAATCTCAA 57.589 42.857 0.00 0.00 0.00 3.02
6564 7165 3.334691 TGGTGGCTTCGTAAATCTCAAG 58.665 45.455 0.00 0.00 0.00 3.02
6565 7166 3.007506 TGGTGGCTTCGTAAATCTCAAGA 59.992 43.478 0.00 0.00 0.00 3.02
6566 7167 4.192317 GGTGGCTTCGTAAATCTCAAGAT 58.808 43.478 0.00 0.00 36.07 2.40
6567 7168 4.034510 GGTGGCTTCGTAAATCTCAAGATG 59.965 45.833 0.00 0.00 34.49 2.90
6568 7169 4.870426 GTGGCTTCGTAAATCTCAAGATGA 59.130 41.667 0.00 0.00 34.49 2.92
6569 7170 5.525378 GTGGCTTCGTAAATCTCAAGATGAT 59.475 40.000 0.00 0.00 34.49 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.541143 CCCCAAAATTTATTGACGCTTATAAAT 57.459 29.630 0.00 0.00 38.12 1.40
2 3 8.750298 TCCCCAAAATTTATTGACGCTTATAAA 58.250 29.630 0.00 0.00 32.52 1.40
3 4 8.192110 GTCCCCAAAATTTATTGACGCTTATAA 58.808 33.333 0.00 0.00 31.84 0.98
4 5 7.467539 CGTCCCCAAAATTTATTGACGCTTATA 60.468 37.037 14.99 0.00 31.84 0.98
5 6 6.569780 GTCCCCAAAATTTATTGACGCTTAT 58.430 36.000 0.00 0.00 31.84 1.73
6 7 5.392165 CGTCCCCAAAATTTATTGACGCTTA 60.392 40.000 14.99 0.00 31.84 3.09
7 8 4.617298 CGTCCCCAAAATTTATTGACGCTT 60.617 41.667 14.99 0.00 31.84 4.68
8 9 3.119637 CGTCCCCAAAATTTATTGACGCT 60.120 43.478 14.99 0.00 31.84 5.07
9 10 3.175929 CGTCCCCAAAATTTATTGACGC 58.824 45.455 14.99 0.00 31.84 5.19
10 11 3.765026 CCGTCCCCAAAATTTATTGACG 58.235 45.455 18.07 18.07 31.62 4.35
11 12 3.194755 AGCCGTCCCCAAAATTTATTGAC 59.805 43.478 0.00 0.00 31.84 3.18
12 13 3.436243 AGCCGTCCCCAAAATTTATTGA 58.564 40.909 0.00 0.00 31.84 2.57
13 14 3.885724 AGCCGTCCCCAAAATTTATTG 57.114 42.857 0.00 0.00 0.00 1.90
14 15 6.553953 AATAAGCCGTCCCCAAAATTTATT 57.446 33.333 0.00 0.00 0.00 1.40
15 16 6.553953 AAATAAGCCGTCCCCAAAATTTAT 57.446 33.333 0.00 0.00 0.00 1.40
16 17 6.361768 AAAATAAGCCGTCCCCAAAATTTA 57.638 33.333 0.00 0.00 0.00 1.40
17 18 4.901197 AAATAAGCCGTCCCCAAAATTT 57.099 36.364 0.00 0.00 0.00 1.82
18 19 4.901197 AAAATAAGCCGTCCCCAAAATT 57.099 36.364 0.00 0.00 0.00 1.82
19 20 4.901197 AAAAATAAGCCGTCCCCAAAAT 57.099 36.364 0.00 0.00 0.00 1.82
37 38 3.149196 CTGCCTCTCCACAGCTTAAAAA 58.851 45.455 0.00 0.00 0.00 1.94
38 39 2.783135 CTGCCTCTCCACAGCTTAAAA 58.217 47.619 0.00 0.00 0.00 1.52
39 40 2.479566 CTGCCTCTCCACAGCTTAAA 57.520 50.000 0.00 0.00 0.00 1.52
45 46 2.706339 AATAAGCTGCCTCTCCACAG 57.294 50.000 0.00 0.00 36.96 3.66
46 47 3.439857 AAAATAAGCTGCCTCTCCACA 57.560 42.857 0.00 0.00 0.00 4.17
64 65 5.344884 CAGTTCTTTTGGACGGCTTAAAAA 58.655 37.500 5.68 2.27 0.00 1.94
65 66 4.202070 CCAGTTCTTTTGGACGGCTTAAAA 60.202 41.667 0.00 0.00 37.96 1.52
66 67 3.316868 CCAGTTCTTTTGGACGGCTTAAA 59.683 43.478 0.00 0.00 37.96 1.52
67 68 2.882137 CCAGTTCTTTTGGACGGCTTAA 59.118 45.455 0.00 0.00 37.96 1.85
68 69 2.500229 CCAGTTCTTTTGGACGGCTTA 58.500 47.619 0.00 0.00 37.96 3.09
69 70 1.318576 CCAGTTCTTTTGGACGGCTT 58.681 50.000 0.00 0.00 37.96 4.35
70 71 1.172812 GCCAGTTCTTTTGGACGGCT 61.173 55.000 0.00 0.00 37.96 5.52
71 72 1.285950 GCCAGTTCTTTTGGACGGC 59.714 57.895 0.00 0.00 37.96 5.68
72 73 1.524008 GGGCCAGTTCTTTTGGACGG 61.524 60.000 4.39 0.00 45.18 4.79
73 74 0.537371 AGGGCCAGTTCTTTTGGACG 60.537 55.000 6.18 0.00 45.18 4.79
74 75 2.579410 TAGGGCCAGTTCTTTTGGAC 57.421 50.000 6.18 0.00 43.39 4.02
75 76 2.445525 ACTTAGGGCCAGTTCTTTTGGA 59.554 45.455 6.18 0.00 37.96 3.53
76 77 2.820197 GACTTAGGGCCAGTTCTTTTGG 59.180 50.000 6.18 0.00 38.78 3.28
77 78 2.820197 GGACTTAGGGCCAGTTCTTTTG 59.180 50.000 6.18 0.00 0.00 2.44
78 79 2.552373 CGGACTTAGGGCCAGTTCTTTT 60.552 50.000 6.18 0.00 0.00 2.27
79 80 1.003233 CGGACTTAGGGCCAGTTCTTT 59.997 52.381 6.18 0.00 0.00 2.52
80 81 0.613777 CGGACTTAGGGCCAGTTCTT 59.386 55.000 6.18 0.00 0.00 2.52
81 82 1.265454 CCGGACTTAGGGCCAGTTCT 61.265 60.000 6.18 0.00 0.00 3.01
82 83 1.221021 CCGGACTTAGGGCCAGTTC 59.779 63.158 6.18 0.00 0.00 3.01
83 84 1.229400 TCCGGACTTAGGGCCAGTT 60.229 57.895 6.18 0.00 0.00 3.16
84 85 1.686110 CTCCGGACTTAGGGCCAGT 60.686 63.158 6.18 0.00 0.00 4.00
85 86 2.435693 CCTCCGGACTTAGGGCCAG 61.436 68.421 6.18 0.00 0.00 4.85
86 87 2.365105 CCTCCGGACTTAGGGCCA 60.365 66.667 6.18 0.00 0.00 5.36
87 88 2.365237 ACCTCCGGACTTAGGGCC 60.365 66.667 11.83 0.00 37.18 5.80
88 89 2.783288 CGACCTCCGGACTTAGGGC 61.783 68.421 11.83 7.79 37.57 5.19
89 90 2.783288 GCGACCTCCGGACTTAGGG 61.783 68.421 11.83 8.64 37.18 3.53
90 91 2.806237 GCGACCTCCGGACTTAGG 59.194 66.667 0.00 2.14 39.04 2.69
91 92 2.408022 CGCGACCTCCGGACTTAG 59.592 66.667 0.00 0.00 39.04 2.18
99 100 3.366739 ATTCGAACCCGCGACCTCC 62.367 63.158 8.23 0.00 40.42 4.30
100 101 1.877165 GATTCGAACCCGCGACCTC 60.877 63.158 8.23 0.00 40.42 3.85
101 102 2.183555 GATTCGAACCCGCGACCT 59.816 61.111 8.23 0.00 40.42 3.85
102 103 2.125832 TGATTCGAACCCGCGACC 60.126 61.111 8.23 0.00 40.42 4.79
103 104 1.012486 AACTGATTCGAACCCGCGAC 61.012 55.000 8.23 0.00 40.42 5.19
104 105 0.734942 GAACTGATTCGAACCCGCGA 60.735 55.000 8.23 0.00 38.72 5.87
105 106 1.693083 GGAACTGATTCGAACCCGCG 61.693 60.000 0.00 0.00 35.48 6.46
106 107 0.672401 TGGAACTGATTCGAACCCGC 60.672 55.000 0.00 0.00 35.48 6.13
107 108 1.359848 CTGGAACTGATTCGAACCCG 58.640 55.000 0.00 0.00 35.48 5.28
108 109 1.087501 GCTGGAACTGATTCGAACCC 58.912 55.000 0.00 0.00 35.48 4.11
109 110 0.721718 CGCTGGAACTGATTCGAACC 59.278 55.000 0.00 0.00 35.48 3.62
110 111 0.095417 GCGCTGGAACTGATTCGAAC 59.905 55.000 0.00 0.00 35.48 3.95
111 112 1.351430 CGCGCTGGAACTGATTCGAA 61.351 55.000 5.56 0.00 35.48 3.71
112 113 1.805539 CGCGCTGGAACTGATTCGA 60.806 57.895 5.56 0.00 35.48 3.71
113 114 2.014093 GACGCGCTGGAACTGATTCG 62.014 60.000 5.73 0.00 35.48 3.34
114 115 1.710339 GACGCGCTGGAACTGATTC 59.290 57.895 5.73 0.00 0.00 2.52
115 116 2.094659 CGACGCGCTGGAACTGATT 61.095 57.895 5.73 0.00 0.00 2.57
116 117 2.507102 CGACGCGCTGGAACTGAT 60.507 61.111 5.73 0.00 0.00 2.90
117 118 4.717629 CCGACGCGCTGGAACTGA 62.718 66.667 5.73 0.00 0.00 3.41
119 120 3.802418 AAACCGACGCGCTGGAACT 62.802 57.895 22.44 5.07 0.00 3.01
120 121 2.888998 AAAACCGACGCGCTGGAAC 61.889 57.895 22.44 0.00 0.00 3.62
121 122 2.589442 AAAACCGACGCGCTGGAA 60.589 55.556 22.44 0.00 0.00 3.53
122 123 3.342627 CAAAACCGACGCGCTGGA 61.343 61.111 22.44 0.00 0.00 3.86
123 124 2.655952 AAACAAAACCGACGCGCTGG 62.656 55.000 15.01 15.01 0.00 4.85
124 125 0.863957 AAAACAAAACCGACGCGCTG 60.864 50.000 5.73 1.02 0.00 5.18
125 126 0.179158 AAAAACAAAACCGACGCGCT 60.179 45.000 5.73 0.00 0.00 5.92
126 127 2.280413 AAAAACAAAACCGACGCGC 58.720 47.368 5.73 0.00 0.00 6.86
165 166 1.610886 GCCGGCCCATCTAGGTATTTC 60.611 57.143 18.11 0.00 34.66 2.17
208 209 5.694910 TGTTCTGTGTTTAAAACCGCAAAAA 59.305 32.000 0.00 0.00 0.00 1.94
209 210 5.227908 TGTTCTGTGTTTAAAACCGCAAAA 58.772 33.333 0.00 0.00 0.00 2.44
210 211 4.806330 TGTTCTGTGTTTAAAACCGCAAA 58.194 34.783 0.00 0.00 0.00 3.68
211 212 4.436242 TGTTCTGTGTTTAAAACCGCAA 57.564 36.364 0.00 0.00 0.00 4.85
212 213 4.436242 TTGTTCTGTGTTTAAAACCGCA 57.564 36.364 0.00 0.00 0.00 5.69
213 214 5.765072 TTTTGTTCTGTGTTTAAAACCGC 57.235 34.783 0.00 0.00 0.00 5.68
214 215 7.703197 AGGTATTTTGTTCTGTGTTTAAAACCG 59.297 33.333 0.00 0.00 0.00 4.44
215 216 8.936070 AGGTATTTTGTTCTGTGTTTAAAACC 57.064 30.769 0.00 0.00 0.00 3.27
220 221 9.226606 CCATCTAGGTATTTTGTTCTGTGTTTA 57.773 33.333 0.00 0.00 0.00 2.01
221 222 7.176690 CCCATCTAGGTATTTTGTTCTGTGTTT 59.823 37.037 0.00 0.00 34.66 2.83
222 223 6.659242 CCCATCTAGGTATTTTGTTCTGTGTT 59.341 38.462 0.00 0.00 34.66 3.32
223 224 6.180472 CCCATCTAGGTATTTTGTTCTGTGT 58.820 40.000 0.00 0.00 34.66 3.72
224 225 5.066505 GCCCATCTAGGTATTTTGTTCTGTG 59.933 44.000 0.00 0.00 34.66 3.66
225 226 5.044846 AGCCCATCTAGGTATTTTGTTCTGT 60.045 40.000 0.00 0.00 34.66 3.41
226 227 5.297776 CAGCCCATCTAGGTATTTTGTTCTG 59.702 44.000 0.00 0.00 34.66 3.02
227 228 5.440610 CAGCCCATCTAGGTATTTTGTTCT 58.559 41.667 0.00 0.00 34.66 3.01
228 229 4.580580 CCAGCCCATCTAGGTATTTTGTTC 59.419 45.833 0.00 0.00 34.66 3.18
229 230 4.536765 CCAGCCCATCTAGGTATTTTGTT 58.463 43.478 0.00 0.00 34.66 2.83
230 231 3.688414 GCCAGCCCATCTAGGTATTTTGT 60.688 47.826 0.00 0.00 34.66 2.83
231 232 2.887152 GCCAGCCCATCTAGGTATTTTG 59.113 50.000 0.00 0.00 34.66 2.44
232 233 2.158460 GGCCAGCCCATCTAGGTATTTT 60.158 50.000 0.00 0.00 34.66 1.82
233 234 1.425448 GGCCAGCCCATCTAGGTATTT 59.575 52.381 0.00 0.00 34.66 1.40
234 235 1.068121 GGCCAGCCCATCTAGGTATT 58.932 55.000 0.00 0.00 34.66 1.89
235 236 2.778899 GGCCAGCCCATCTAGGTAT 58.221 57.895 0.00 0.00 34.66 2.73
236 237 4.313523 GGCCAGCCCATCTAGGTA 57.686 61.111 0.00 0.00 34.66 3.08
251 252 2.104572 TATCTGGCGCTCATCTGGGC 62.105 60.000 7.64 0.00 43.82 5.36
252 253 0.037512 CTATCTGGCGCTCATCTGGG 60.038 60.000 7.64 0.00 0.00 4.45
253 254 0.037512 CCTATCTGGCGCTCATCTGG 60.038 60.000 7.64 0.00 0.00 3.86
254 255 0.037512 CCCTATCTGGCGCTCATCTG 60.038 60.000 7.64 0.00 0.00 2.90
255 256 0.470833 ACCCTATCTGGCGCTCATCT 60.471 55.000 7.64 0.00 0.00 2.90
256 257 0.394565 AACCCTATCTGGCGCTCATC 59.605 55.000 7.64 0.00 0.00 2.92
257 258 0.839946 AAACCCTATCTGGCGCTCAT 59.160 50.000 7.64 0.00 0.00 2.90
258 259 0.107703 CAAACCCTATCTGGCGCTCA 60.108 55.000 7.64 2.39 0.00 4.26
259 260 1.440145 GCAAACCCTATCTGGCGCTC 61.440 60.000 7.64 0.00 0.00 5.03
260 261 1.452108 GCAAACCCTATCTGGCGCT 60.452 57.895 7.64 0.00 0.00 5.92
261 262 2.481471 GGCAAACCCTATCTGGCGC 61.481 63.158 0.00 0.00 0.00 6.53
262 263 3.827634 GGCAAACCCTATCTGGCG 58.172 61.111 0.00 0.00 0.00 5.69
425 426 2.614983 GACTACGAGTGATGGAGGAGAC 59.385 54.545 0.00 0.00 0.00 3.36
503 504 7.017645 CAGATTGTAACAATCGAGTGAAAAGG 58.982 38.462 21.18 0.00 0.00 3.11
505 506 6.370593 GCAGATTGTAACAATCGAGTGAAAA 58.629 36.000 21.18 8.13 0.00 2.29
636 795 4.990257 AGTCAAAGAATTGCATCATTCCG 58.010 39.130 7.38 0.00 36.45 4.30
660 819 4.856664 TCTCCACGCGAATAGAATAAGAC 58.143 43.478 15.93 0.00 0.00 3.01
1047 1235 3.544684 TCTCAGCTTCTTTTTGTCAGCA 58.455 40.909 0.00 0.00 34.49 4.41
1113 1301 3.626729 CCTTTGGAGGAAGAATGGCATCT 60.627 47.826 0.00 0.00 46.74 2.90
1684 1969 8.560903 AGTGGAAATGAGAAGGGTTAAGATTAT 58.439 33.333 0.00 0.00 0.00 1.28
2055 2340 4.771054 CCTACTATGGTACCCATACACTCC 59.229 50.000 10.07 0.00 43.19 3.85
2152 2437 4.082571 GCACATGTTGTCTTTGGCTTAGAT 60.083 41.667 0.00 0.00 0.00 1.98
2162 2486 8.677300 CATACTAATTTAGGCACATGTTGTCTT 58.323 33.333 8.26 0.00 36.44 3.01
2163 2487 8.046708 TCATACTAATTTAGGCACATGTTGTCT 58.953 33.333 8.26 1.35 44.66 3.41
2164 2488 8.122952 GTCATACTAATTTAGGCACATGTTGTC 58.877 37.037 8.26 0.00 0.00 3.18
2165 2489 7.829211 AGTCATACTAATTTAGGCACATGTTGT 59.171 33.333 8.26 0.00 0.00 3.32
2166 2490 8.213518 AGTCATACTAATTTAGGCACATGTTG 57.786 34.615 8.26 0.00 0.00 3.33
2182 2506 8.851145 CCTCTTGCTGAAGTAATAGTCATACTA 58.149 37.037 0.00 0.00 34.82 1.82
2183 2507 7.561722 TCCTCTTGCTGAAGTAATAGTCATACT 59.438 37.037 0.00 0.00 35.15 2.12
2184 2508 7.717568 TCCTCTTGCTGAAGTAATAGTCATAC 58.282 38.462 0.00 0.00 0.00 2.39
2185 2509 7.898014 TCCTCTTGCTGAAGTAATAGTCATA 57.102 36.000 0.00 0.00 0.00 2.15
2186 2510 6.798427 TCCTCTTGCTGAAGTAATAGTCAT 57.202 37.500 0.00 0.00 0.00 3.06
2187 2511 6.211584 AGTTCCTCTTGCTGAAGTAATAGTCA 59.788 38.462 0.00 0.00 0.00 3.41
2188 2512 6.635755 AGTTCCTCTTGCTGAAGTAATAGTC 58.364 40.000 0.00 0.00 0.00 2.59
2189 2513 6.613153 AGTTCCTCTTGCTGAAGTAATAGT 57.387 37.500 0.00 0.00 0.00 2.12
2190 2514 7.913674 AAAGTTCCTCTTGCTGAAGTAATAG 57.086 36.000 0.00 0.00 36.40 1.73
2191 2515 7.936847 TCAAAAGTTCCTCTTGCTGAAGTAATA 59.063 33.333 0.00 0.00 36.40 0.98
2192 2516 6.772716 TCAAAAGTTCCTCTTGCTGAAGTAAT 59.227 34.615 0.00 0.00 36.40 1.89
2193 2517 6.119536 TCAAAAGTTCCTCTTGCTGAAGTAA 58.880 36.000 0.00 0.00 36.40 2.24
2194 2518 5.680619 TCAAAAGTTCCTCTTGCTGAAGTA 58.319 37.500 0.00 0.00 36.40 2.24
2195 2519 4.526970 TCAAAAGTTCCTCTTGCTGAAGT 58.473 39.130 0.00 0.00 36.40 3.01
2196 2520 5.702349 ATCAAAAGTTCCTCTTGCTGAAG 57.298 39.130 0.00 0.00 36.40 3.02
2197 2521 6.716628 ACATATCAAAAGTTCCTCTTGCTGAA 59.283 34.615 0.00 0.00 36.40 3.02
2198 2522 6.240894 ACATATCAAAAGTTCCTCTTGCTGA 58.759 36.000 0.00 0.00 36.40 4.26
2199 2523 6.373774 AGACATATCAAAAGTTCCTCTTGCTG 59.626 38.462 0.00 0.00 36.40 4.41
2200 2524 6.479884 AGACATATCAAAAGTTCCTCTTGCT 58.520 36.000 0.00 0.00 36.40 3.91
2308 2632 5.888161 ACATTAAAGATGGATCCCACAGTTC 59.112 40.000 9.90 0.00 35.80 3.01
2875 3200 6.595326 TGAAGATAAACTCAGGTGTGCATTAG 59.405 38.462 0.00 0.00 0.00 1.73
3167 3493 1.202722 TGTTCCTCGGTGGTTTTCTCC 60.203 52.381 0.00 0.00 37.07 3.71
3284 3610 0.682209 CTGGCATGGGGAGGTCTTTG 60.682 60.000 0.00 0.00 0.00 2.77
3363 3691 4.163078 CACATGAACCTACTCAGAAGGGAT 59.837 45.833 0.00 0.00 38.54 3.85
3464 3794 7.781056 ACATGGTTTTGTTGACTATCAAAAGT 58.219 30.769 0.00 0.00 41.85 2.66
3500 3830 7.040201 AGCAATGCCAATATTTACTGATGTAGG 60.040 37.037 0.00 0.00 0.00 3.18
3855 4185 1.754745 GGAGGACTTCACCACTGCA 59.245 57.895 0.00 0.00 0.00 4.41
3924 4254 1.907255 ACCTAGTCTTACCCCTGCAAC 59.093 52.381 0.00 0.00 0.00 4.17
4117 4574 5.129485 CCTTAGAACCCTGTCATGTATCTGT 59.871 44.000 0.00 0.00 0.00 3.41
4154 4717 8.617290 AAATCAAACCCTAGTGTGTAAGTTAG 57.383 34.615 0.00 0.00 32.53 2.34
4681 5247 4.424061 TGTTATCATGCTGTTCAACTGC 57.576 40.909 12.27 12.27 42.44 4.40
4723 5289 1.032014 TCCACTTCCAGTTGCTTTGC 58.968 50.000 0.00 0.00 0.00 3.68
4906 5472 3.845781 TCAGAAACTTGCAGTCTTCCT 57.154 42.857 0.00 0.00 0.00 3.36
5017 5583 3.062763 AGAGCATCACATAATGTAGCGC 58.937 45.455 0.00 0.00 37.82 5.92
5018 5584 4.053983 ACAGAGCATCACATAATGTAGCG 58.946 43.478 0.00 0.00 37.82 4.26
5112 5678 8.556194 TCTATGATGAATTTGCATACGGTTAAC 58.444 33.333 0.00 0.00 0.00 2.01
5624 6190 1.767759 ACAAGCCTGAACAACAAGCT 58.232 45.000 0.00 0.00 46.72 3.74
5732 6301 1.152860 TCAAGCGCCCACCAAAAGA 60.153 52.632 2.29 0.00 0.00 2.52
5745 6314 6.595772 AATTCATGAATACGAGACTCAAGC 57.404 37.500 21.00 0.00 0.00 4.01
5767 6336 6.293735 GGGATCTGTTTTGACGTCACAAATAA 60.294 38.462 19.90 6.64 39.09 1.40
5770 6339 3.314080 GGGATCTGTTTTGACGTCACAAA 59.686 43.478 19.90 17.80 37.87 2.83
5826 6395 8.991783 AGATCATTTGTCACCATATCATTCTT 57.008 30.769 0.00 0.00 0.00 2.52
5827 6396 7.387122 CGAGATCATTTGTCACCATATCATTCT 59.613 37.037 0.00 0.00 0.00 2.40
5828 6397 7.360691 CCGAGATCATTTGTCACCATATCATTC 60.361 40.741 0.00 0.00 0.00 2.67
5939 6509 1.228154 AACCTTGTCAAGCCGACCC 60.228 57.895 7.09 0.00 44.71 4.46
5940 6510 1.566018 CGAACCTTGTCAAGCCGACC 61.566 60.000 7.09 0.00 44.71 4.79
5941 6511 0.599204 TCGAACCTTGTCAAGCCGAC 60.599 55.000 7.09 0.00 45.61 4.79
5942 6512 0.319555 CTCGAACCTTGTCAAGCCGA 60.320 55.000 7.09 13.08 0.00 5.54
5943 6513 0.319555 TCTCGAACCTTGTCAAGCCG 60.320 55.000 7.09 9.82 0.00 5.52
5961 6531 1.599797 CAACCCCACCCACGAAGTC 60.600 63.158 0.00 0.00 41.61 3.01
5977 6547 6.194285 TGATCGGACCCCATTTATTATCAA 57.806 37.500 0.00 0.00 0.00 2.57
5978 6548 5.834281 TGATCGGACCCCATTTATTATCA 57.166 39.130 0.00 0.00 0.00 2.15
5998 6568 4.020617 CGGCCACCCTGAGCTTGA 62.021 66.667 2.24 0.00 0.00 3.02
6018 6588 0.608640 GTGATGTCAACCTCCCTCGT 59.391 55.000 0.00 0.00 0.00 4.18
6042 6616 1.047801 AAGGCGGCAAAAATCAAGGT 58.952 45.000 13.08 0.00 0.00 3.50
6053 6627 3.626680 CTCGACGAGAAAGGCGGCA 62.627 63.158 20.25 0.00 44.03 5.69
6058 6632 0.171455 CAGACCCTCGACGAGAAAGG 59.829 60.000 26.11 19.77 0.00 3.11
6086 6660 1.148310 CGCGGAGAAAGCTTGAGAAA 58.852 50.000 0.00 0.00 0.00 2.52
6120 6694 3.322254 AGGTGGAGAGTGTGTACTTGAAG 59.678 47.826 0.00 0.00 37.25 3.02
6136 6710 2.833227 CGTTGGGGTGAAGGTGGA 59.167 61.111 0.00 0.00 0.00 4.02
6137 6711 2.983592 GCGTTGGGGTGAAGGTGG 60.984 66.667 0.00 0.00 0.00 4.61
6157 6731 1.207089 CAAACATAGCGAGGACCAGGA 59.793 52.381 0.00 0.00 0.00 3.86
6168 6742 3.126858 TCGTCCAAATGAGCAAACATAGC 59.873 43.478 0.00 0.00 0.00 2.97
6195 6769 1.369625 GACGACATCACCCCAATGAC 58.630 55.000 0.00 0.00 0.00 3.06
6208 6782 0.249120 ATTTCCCATCAGCGACGACA 59.751 50.000 0.00 0.00 0.00 4.35
6392 6993 2.305927 CCTAACCATCTCAACCACAGGT 59.694 50.000 0.00 0.00 37.65 4.00
6393 6994 2.305927 ACCTAACCATCTCAACCACAGG 59.694 50.000 0.00 0.00 0.00 4.00
6394 6995 3.338249 CACCTAACCATCTCAACCACAG 58.662 50.000 0.00 0.00 0.00 3.66
6395 6996 2.039746 CCACCTAACCATCTCAACCACA 59.960 50.000 0.00 0.00 0.00 4.17
6396 6997 2.304761 TCCACCTAACCATCTCAACCAC 59.695 50.000 0.00 0.00 0.00 4.16
6397 6998 2.304761 GTCCACCTAACCATCTCAACCA 59.695 50.000 0.00 0.00 0.00 3.67
6398 6999 2.304761 TGTCCACCTAACCATCTCAACC 59.695 50.000 0.00 0.00 0.00 3.77
6399 7000 3.008049 ACTGTCCACCTAACCATCTCAAC 59.992 47.826 0.00 0.00 0.00 3.18
6400 7001 3.007940 CACTGTCCACCTAACCATCTCAA 59.992 47.826 0.00 0.00 0.00 3.02
6401 7002 2.567169 CACTGTCCACCTAACCATCTCA 59.433 50.000 0.00 0.00 0.00 3.27
6402 7003 2.093447 CCACTGTCCACCTAACCATCTC 60.093 54.545 0.00 0.00 0.00 2.75
6403 7004 1.909302 CCACTGTCCACCTAACCATCT 59.091 52.381 0.00 0.00 0.00 2.90
6404 7005 1.628846 ACCACTGTCCACCTAACCATC 59.371 52.381 0.00 0.00 0.00 3.51
6405 7006 1.742308 ACCACTGTCCACCTAACCAT 58.258 50.000 0.00 0.00 0.00 3.55
6406 7007 2.402182 TACCACTGTCCACCTAACCA 57.598 50.000 0.00 0.00 0.00 3.67
6407 7008 2.169978 GGATACCACTGTCCACCTAACC 59.830 54.545 0.00 0.00 34.57 2.85
6408 7009 3.538634 GGATACCACTGTCCACCTAAC 57.461 52.381 0.00 0.00 34.57 2.34
6434 7035 1.549203 CAGGATTTGAACCCTGGTGG 58.451 55.000 0.00 0.00 44.68 4.61
6439 7040 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
6440 7041 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
6441 7042 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
6442 7043 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
6443 7044 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
6444 7045 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
6445 7046 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
6446 7047 2.418368 TAATGCGAGCACCAGGATTT 57.582 45.000 0.00 0.00 31.11 2.17
6447 7048 2.645838 ATAATGCGAGCACCAGGATT 57.354 45.000 0.00 0.00 33.17 3.01
6448 7049 2.498167 GAATAATGCGAGCACCAGGAT 58.502 47.619 0.00 0.00 0.00 3.24
6449 7050 1.475034 GGAATAATGCGAGCACCAGGA 60.475 52.381 0.00 0.00 0.00 3.86
6450 7051 0.947244 GGAATAATGCGAGCACCAGG 59.053 55.000 0.00 0.00 0.00 4.45
6451 7052 1.600957 CAGGAATAATGCGAGCACCAG 59.399 52.381 0.00 0.00 0.00 4.00
6452 7053 1.667236 CAGGAATAATGCGAGCACCA 58.333 50.000 0.00 0.00 0.00 4.17
6453 7054 0.947244 CCAGGAATAATGCGAGCACC 59.053 55.000 0.00 0.00 0.00 5.01
6454 7055 1.953559 TCCAGGAATAATGCGAGCAC 58.046 50.000 0.00 0.00 0.00 4.40
6455 7056 2.936919 ATCCAGGAATAATGCGAGCA 57.063 45.000 0.00 0.00 0.00 4.26
6456 7057 5.886960 ATAAATCCAGGAATAATGCGAGC 57.113 39.130 0.00 0.00 0.00 5.03
6457 7058 7.874940 TGAAATAAATCCAGGAATAATGCGAG 58.125 34.615 0.00 0.00 0.00 5.03
6458 7059 7.815840 TGAAATAAATCCAGGAATAATGCGA 57.184 32.000 0.00 0.00 0.00 5.10
6468 7069 5.010012 CCGGAAATCCTGAAATAAATCCAGG 59.990 44.000 0.00 0.00 46.64 4.45
6469 7070 5.507985 GCCGGAAATCCTGAAATAAATCCAG 60.508 44.000 5.05 0.00 0.00 3.86
6470 7071 4.340950 GCCGGAAATCCTGAAATAAATCCA 59.659 41.667 5.05 0.00 0.00 3.41
6471 7072 4.556699 CGCCGGAAATCCTGAAATAAATCC 60.557 45.833 5.05 0.00 0.00 3.01
6472 7073 4.274950 TCGCCGGAAATCCTGAAATAAATC 59.725 41.667 5.05 0.00 0.00 2.17
6473 7074 4.204012 TCGCCGGAAATCCTGAAATAAAT 58.796 39.130 5.05 0.00 0.00 1.40
6474 7075 3.611970 TCGCCGGAAATCCTGAAATAAA 58.388 40.909 5.05 0.00 0.00 1.40
6475 7076 3.269538 TCGCCGGAAATCCTGAAATAA 57.730 42.857 5.05 0.00 0.00 1.40
6476 7077 2.992124 TCGCCGGAAATCCTGAAATA 57.008 45.000 5.05 0.00 0.00 1.40
6477 7078 1.949525 CATCGCCGGAAATCCTGAAAT 59.050 47.619 5.05 0.00 0.00 2.17
6478 7079 1.378531 CATCGCCGGAAATCCTGAAA 58.621 50.000 5.05 0.00 0.00 2.69
6479 7080 1.095228 GCATCGCCGGAAATCCTGAA 61.095 55.000 5.05 0.00 0.00 3.02
6480 7081 1.523711 GCATCGCCGGAAATCCTGA 60.524 57.895 5.05 0.00 0.00 3.86
6481 7082 2.885676 CGCATCGCCGGAAATCCTG 61.886 63.158 5.05 0.00 0.00 3.86
6482 7083 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
6493 7094 1.699656 CTCCCACTGAAAGCGCATCG 61.700 60.000 11.47 6.82 37.60 3.84
6494 7095 1.372087 CCTCCCACTGAAAGCGCATC 61.372 60.000 11.47 8.39 37.60 3.91
6495 7096 1.377725 CCTCCCACTGAAAGCGCAT 60.378 57.895 11.47 0.00 37.60 4.73
6496 7097 2.032528 CCTCCCACTGAAAGCGCA 59.967 61.111 11.47 0.00 37.60 6.09
6497 7098 1.743252 CTCCTCCCACTGAAAGCGC 60.743 63.158 0.00 0.00 37.60 5.92
6498 7099 0.390472 GTCTCCTCCCACTGAAAGCG 60.390 60.000 0.00 0.00 37.60 4.68
6499 7100 0.390472 CGTCTCCTCCCACTGAAAGC 60.390 60.000 0.00 0.00 37.60 3.51
6500 7101 0.969894 ACGTCTCCTCCCACTGAAAG 59.030 55.000 0.00 0.00 42.29 2.62
6501 7102 1.420430 AACGTCTCCTCCCACTGAAA 58.580 50.000 0.00 0.00 0.00 2.69
6502 7103 1.343465 GAAACGTCTCCTCCCACTGAA 59.657 52.381 0.00 0.00 0.00 3.02
6503 7104 0.966920 GAAACGTCTCCTCCCACTGA 59.033 55.000 0.00 0.00 0.00 3.41
6504 7105 0.037232 GGAAACGTCTCCTCCCACTG 60.037 60.000 0.00 0.00 32.21 3.66
6505 7106 2.363297 GGAAACGTCTCCTCCCACT 58.637 57.895 0.00 0.00 32.21 4.00
6526 7127 3.950254 ATAGGCGCCTCGTCGTCG 61.950 66.667 36.73 0.00 39.34 5.12
6527 7128 2.353607 CATAGGCGCCTCGTCGTC 60.354 66.667 36.73 0.00 36.23 4.20
6528 7129 3.900892 CCATAGGCGCCTCGTCGT 61.901 66.667 36.73 11.27 36.23 4.34
6529 7130 3.900892 ACCATAGGCGCCTCGTCG 61.901 66.667 36.73 21.01 36.23 5.12
6530 7131 2.279517 CACCATAGGCGCCTCGTC 60.280 66.667 36.73 1.08 0.00 4.20
6531 7132 3.849951 CCACCATAGGCGCCTCGT 61.850 66.667 36.73 24.45 0.00 4.18
6539 7140 4.058817 GAGATTTACGAAGCCACCATAGG 58.941 47.826 0.00 0.00 0.00 2.57
6540 7141 4.693283 TGAGATTTACGAAGCCACCATAG 58.307 43.478 0.00 0.00 0.00 2.23
6541 7142 4.746535 TGAGATTTACGAAGCCACCATA 57.253 40.909 0.00 0.00 0.00 2.74
6542 7143 3.627395 TGAGATTTACGAAGCCACCAT 57.373 42.857 0.00 0.00 0.00 3.55
6543 7144 3.007506 TCTTGAGATTTACGAAGCCACCA 59.992 43.478 0.00 0.00 0.00 4.17
6544 7145 3.596214 TCTTGAGATTTACGAAGCCACC 58.404 45.455 0.00 0.00 0.00 4.61
6545 7146 4.870426 TCATCTTGAGATTTACGAAGCCAC 59.130 41.667 0.00 0.00 31.21 5.01
6546 7147 5.084818 TCATCTTGAGATTTACGAAGCCA 57.915 39.130 0.00 0.00 31.21 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.