Multiple sequence alignment - TraesCS7D01G242500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G242500 chr7D 100.000 6543 0 0 297 6839 207545253 207551795 0.000000e+00 12083.0
1 TraesCS7D01G242500 chr7D 92.359 602 33 4 6246 6839 583072591 583073187 0.000000e+00 845.0
2 TraesCS7D01G242500 chr7D 94.083 169 10 0 358 526 389203602 389203770 2.450000e-64 257.0
3 TraesCS7D01G242500 chr7D 100.000 105 0 0 1 105 207544957 207545061 1.950000e-45 195.0
4 TraesCS7D01G242500 chr7D 94.340 106 5 1 1 105 503268947 503269052 1.970000e-35 161.0
5 TraesCS7D01G242500 chr7B 96.089 3580 120 7 2385 5951 193533877 193530305 0.000000e+00 5818.0
6 TraesCS7D01G242500 chr7B 93.693 1522 63 11 572 2065 193535823 193534307 0.000000e+00 2248.0
7 TraesCS7D01G242500 chr7B 95.349 344 16 0 2057 2400 193534281 193533938 1.300000e-151 547.0
8 TraesCS7D01G242500 chr7B 90.432 324 16 3 5939 6253 193530287 193529970 4.940000e-111 412.0
9 TraesCS7D01G242500 chr7A 88.769 1389 113 24 3170 4532 220096708 220098079 0.000000e+00 1661.0
10 TraesCS7D01G242500 chr7A 90.430 1024 80 7 2061 3072 220095724 220096741 0.000000e+00 1332.0
11 TraesCS7D01G242500 chr7A 87.985 824 82 5 4586 5394 220098426 220099247 0.000000e+00 957.0
12 TraesCS7D01G242500 chr7A 85.847 756 70 20 5507 6252 220099371 220100099 0.000000e+00 769.0
13 TraesCS7D01G242500 chr7A 79.149 705 81 40 572 1263 220093648 220094299 1.760000e-115 427.0
14 TraesCS7D01G242500 chr2D 93.255 593 27 4 6254 6839 399427343 399427929 0.000000e+00 861.0
15 TraesCS7D01G242500 chr2D 92.193 602 33 4 6245 6839 336652319 336652913 0.000000e+00 839.0
16 TraesCS7D01G242500 chr2D 93.491 169 11 0 358 526 89469956 89469788 1.140000e-62 252.0
17 TraesCS7D01G242500 chr2D 93.458 107 5 1 1 105 422503653 422503759 2.550000e-34 158.0
18 TraesCS7D01G242500 chr5D 92.384 604 30 5 6245 6839 488165760 488166356 0.000000e+00 846.0
19 TraesCS7D01G242500 chr5D 92.053 604 34 7 6242 6839 382081761 382082356 0.000000e+00 837.0
20 TraesCS7D01G242500 chr5D 93.491 169 11 0 358 526 115192663 115192831 1.140000e-62 252.0
21 TraesCS7D01G242500 chr5D 97.248 109 3 0 3074 3182 51253876 51253984 1.170000e-42 185.0
22 TraesCS7D01G242500 chr5D 97.248 109 3 0 3074 3182 51330442 51330550 1.170000e-42 185.0
23 TraesCS7D01G242500 chr5D 97.248 109 3 0 3074 3182 188340308 188340200 1.170000e-42 185.0
24 TraesCS7D01G242500 chr2B 92.761 594 29 5 6254 6839 17154012 17154599 0.000000e+00 846.0
25 TraesCS7D01G242500 chr6D 92.092 607 34 6 6241 6839 58437163 58437763 0.000000e+00 843.0
26 TraesCS7D01G242500 chr6D 93.491 169 11 0 358 526 304127282 304127450 1.140000e-62 252.0
27 TraesCS7D01G242500 chr4A 92.105 608 33 6 6240 6838 334464323 334464924 0.000000e+00 843.0
28 TraesCS7D01G242500 chr4A 97.297 111 3 0 3074 3184 115567129 115567239 9.050000e-44 189.0
29 TraesCS7D01G242500 chr3D 92.630 597 27 4 6254 6839 578149104 578148514 0.000000e+00 843.0
30 TraesCS7D01G242500 chr3D 94.083 169 10 0 358 526 185338836 185338668 2.450000e-64 257.0
31 TraesCS7D01G242500 chr3D 93.491 169 11 0 358 526 259417928 259417760 1.140000e-62 252.0
32 TraesCS7D01G242500 chr3D 93.491 169 11 0 358 526 334839670 334839838 1.140000e-62 252.0
33 TraesCS7D01G242500 chr3D 98.165 109 2 0 3074 3182 324319166 324319274 2.520000e-44 191.0
34 TraesCS7D01G242500 chr3D 98.148 108 2 0 3074 3181 32006061 32006168 9.050000e-44 189.0
35 TraesCS7D01G242500 chr3D 94.340 106 5 1 1 105 57144744 57144849 1.970000e-35 161.0
36 TraesCS7D01G242500 chr4D 94.083 169 10 0 358 526 365318602 365318434 2.450000e-64 257.0
37 TraesCS7D01G242500 chr4D 93.396 106 6 1 1 105 308832828 308832933 9.180000e-34 156.0
38 TraesCS7D01G242500 chr4D 93.396 106 6 1 1 105 312734575 312734680 9.180000e-34 156.0
39 TraesCS7D01G242500 chr2A 94.083 169 10 0 358 526 574459860 574459692 2.450000e-64 257.0
40 TraesCS7D01G242500 chr4B 97.248 109 3 0 3074 3182 494225888 494225780 1.170000e-42 185.0
41 TraesCS7D01G242500 chr1A 94.872 117 5 1 3076 3192 497521736 497521851 1.520000e-41 182.0
42 TraesCS7D01G242500 chr1D 94.286 105 5 1 1 104 128032139 128032035 7.100000e-35 159.0
43 TraesCS7D01G242500 chr1D 93.458 107 5 1 1 105 257242934 257242828 2.550000e-34 158.0
44 TraesCS7D01G242500 chr1D 93.396 106 6 1 1 105 239668138 239668033 9.180000e-34 156.0
45 TraesCS7D01G242500 chr1D 93.396 106 6 1 1 105 257261816 257261711 9.180000e-34 156.0
46 TraesCS7D01G242500 chrUn 91.525 59 5 0 297 355 290755543 290755601 1.580000e-11 82.4
47 TraesCS7D01G242500 chrUn 91.525 59 5 0 297 355 299218187 299218129 1.580000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G242500 chr7D 207544957 207551795 6838 False 6139.00 12083 100.00000 1 6839 2 chr7D.!!$F4 6838
1 TraesCS7D01G242500 chr7D 583072591 583073187 596 False 845.00 845 92.35900 6246 6839 1 chr7D.!!$F3 593
2 TraesCS7D01G242500 chr7B 193529970 193535823 5853 True 2256.25 5818 93.89075 572 6253 4 chr7B.!!$R1 5681
3 TraesCS7D01G242500 chr7A 220093648 220100099 6451 False 1029.20 1661 86.43600 572 6252 5 chr7A.!!$F1 5680
4 TraesCS7D01G242500 chr2D 399427343 399427929 586 False 861.00 861 93.25500 6254 6839 1 chr2D.!!$F2 585
5 TraesCS7D01G242500 chr2D 336652319 336652913 594 False 839.00 839 92.19300 6245 6839 1 chr2D.!!$F1 594
6 TraesCS7D01G242500 chr5D 488165760 488166356 596 False 846.00 846 92.38400 6245 6839 1 chr5D.!!$F5 594
7 TraesCS7D01G242500 chr5D 382081761 382082356 595 False 837.00 837 92.05300 6242 6839 1 chr5D.!!$F4 597
8 TraesCS7D01G242500 chr2B 17154012 17154599 587 False 846.00 846 92.76100 6254 6839 1 chr2B.!!$F1 585
9 TraesCS7D01G242500 chr6D 58437163 58437763 600 False 843.00 843 92.09200 6241 6839 1 chr6D.!!$F1 598
10 TraesCS7D01G242500 chr4A 334464323 334464924 601 False 843.00 843 92.10500 6240 6838 1 chr4A.!!$F2 598
11 TraesCS7D01G242500 chr3D 578148514 578149104 590 True 843.00 843 92.63000 6254 6839 1 chr3D.!!$R3 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
417 418 0.034896 ATTCCAGTTGTCGGCGTTCT 59.965 50.000 6.85 0.00 0.00 3.01 F
421 422 0.039074 CAGTTGTCGGCGTTCTCTCT 60.039 55.000 6.85 0.00 0.00 3.10 F
551 552 0.039617 CGCGTGCTTGATTTTGGGAA 60.040 50.000 0.00 0.00 0.00 3.97 F
567 568 0.586802 GGAATACATTTCGAGCCGGC 59.413 55.000 21.89 21.89 0.00 6.13 F
1012 1019 0.975887 TCCATATATGCGCTCTGCCA 59.024 50.000 9.73 0.00 45.60 4.92 F
1344 1401 1.131504 TGTTCGTGTGTTTGTTCCTGC 59.868 47.619 0.00 0.00 0.00 4.85 F
2598 3498 0.253044 TCTAAAAGAGCTGGCGGCAT 59.747 50.000 22.28 5.55 44.79 4.40 F
2727 3627 2.713167 CTGGTATCATGGTCCCCAAGAT 59.287 50.000 6.29 6.29 43.21 2.40 F
4053 5005 1.471287 TCAGTTCCCGTACATCTGTCG 59.529 52.381 0.00 0.00 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1930 2111 0.031857 CAGTTTTTGGCACGCCATCA 59.968 50.000 12.39 0.00 46.64 3.07 R
2058 2244 0.394899 AGGAAAGGCATGCCAGTAGC 60.395 55.000 37.18 20.53 44.14 3.58 R
2059 2245 1.211457 AGAGGAAAGGCATGCCAGTAG 59.789 52.381 37.18 0.00 38.92 2.57 R
2299 3123 4.457834 AAGTCTGTCACGGAAAGGATAG 57.542 45.455 0.00 0.00 0.00 2.08 R
2589 3489 0.527565 AAGCTTTGTTATGCCGCCAG 59.472 50.000 0.00 0.00 0.00 4.85 R
2727 3627 0.817654 CGTCACTGGCCAGATGTAGA 59.182 55.000 39.19 22.67 0.00 2.59 R
3823 4775 0.607489 CCCTGCAGAGAAACACTGGG 60.607 60.000 17.39 0.00 36.09 4.45 R
4412 5367 1.609555 AGCGGAAGTATCACCTCGATC 59.390 52.381 0.00 0.00 35.39 3.69 R
5955 7316 0.317479 AGCTACAGAAACGAACGCCT 59.683 50.000 0.00 0.00 0.00 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.255032 AAGTGCTCCTGCCCAAGT 58.745 55.556 0.00 0.00 38.71 3.16
18 19 1.538666 AAGTGCTCCTGCCCAAGTT 59.461 52.632 0.00 0.00 38.71 2.66
19 20 0.538287 AAGTGCTCCTGCCCAAGTTC 60.538 55.000 0.00 0.00 38.71 3.01
20 21 1.973812 GTGCTCCTGCCCAAGTTCC 60.974 63.158 0.00 0.00 38.71 3.62
21 22 2.747855 GCTCCTGCCCAAGTTCCG 60.748 66.667 0.00 0.00 0.00 4.30
22 23 2.747855 CTCCTGCCCAAGTTCCGC 60.748 66.667 0.00 0.00 0.00 5.54
23 24 4.344865 TCCTGCCCAAGTTCCGCC 62.345 66.667 0.00 0.00 0.00 6.13
24 25 4.351054 CCTGCCCAAGTTCCGCCT 62.351 66.667 0.00 0.00 0.00 5.52
25 26 2.747855 CTGCCCAAGTTCCGCCTC 60.748 66.667 0.00 0.00 0.00 4.70
26 27 4.697756 TGCCCAAGTTCCGCCTCG 62.698 66.667 0.00 0.00 0.00 4.63
27 28 4.388499 GCCCAAGTTCCGCCTCGA 62.388 66.667 0.00 0.00 0.00 4.04
28 29 2.125512 CCCAAGTTCCGCCTCGAG 60.126 66.667 5.13 5.13 0.00 4.04
29 30 2.646175 CCCAAGTTCCGCCTCGAGA 61.646 63.158 15.71 0.00 0.00 4.04
30 31 1.446272 CCAAGTTCCGCCTCGAGAC 60.446 63.158 15.71 0.00 0.00 3.36
31 32 1.801913 CAAGTTCCGCCTCGAGACG 60.802 63.158 15.71 15.17 0.00 4.18
56 57 3.062639 TTCGTCCCGAAAGTCCCC 58.937 61.111 0.00 0.00 43.00 4.81
57 58 1.534717 TTCGTCCCGAAAGTCCCCT 60.535 57.895 0.00 0.00 43.00 4.79
58 59 1.538687 TTCGTCCCGAAAGTCCCCTC 61.539 60.000 0.00 0.00 43.00 4.30
59 60 2.987962 GTCCCGAAAGTCCCCTCC 59.012 66.667 0.00 0.00 0.00 4.30
60 61 1.612739 GTCCCGAAAGTCCCCTCCT 60.613 63.158 0.00 0.00 0.00 3.69
61 62 1.612442 TCCCGAAAGTCCCCTCCTG 60.612 63.158 0.00 0.00 0.00 3.86
62 63 1.612442 CCCGAAAGTCCCCTCCTGA 60.612 63.158 0.00 0.00 0.00 3.86
63 64 0.983378 CCCGAAAGTCCCCTCCTGAT 60.983 60.000 0.00 0.00 0.00 2.90
64 65 0.912486 CCGAAAGTCCCCTCCTGATT 59.088 55.000 0.00 0.00 0.00 2.57
65 66 1.282157 CCGAAAGTCCCCTCCTGATTT 59.718 52.381 0.00 0.00 0.00 2.17
66 67 2.290960 CCGAAAGTCCCCTCCTGATTTT 60.291 50.000 0.00 0.00 0.00 1.82
67 68 3.421844 CGAAAGTCCCCTCCTGATTTTT 58.578 45.455 0.00 0.00 0.00 1.94
68 69 3.440522 CGAAAGTCCCCTCCTGATTTTTC 59.559 47.826 0.00 0.00 0.00 2.29
69 70 4.667573 GAAAGTCCCCTCCTGATTTTTCT 58.332 43.478 0.00 0.00 0.00 2.52
70 71 5.570844 CGAAAGTCCCCTCCTGATTTTTCTA 60.571 44.000 0.00 0.00 0.00 2.10
71 72 5.443230 AAGTCCCCTCCTGATTTTTCTAG 57.557 43.478 0.00 0.00 0.00 2.43
72 73 3.783082 AGTCCCCTCCTGATTTTTCTAGG 59.217 47.826 0.00 0.00 0.00 3.02
73 74 3.523972 GTCCCCTCCTGATTTTTCTAGGT 59.476 47.826 0.00 0.00 33.30 3.08
74 75 3.523564 TCCCCTCCTGATTTTTCTAGGTG 59.476 47.826 0.00 0.00 33.30 4.00
75 76 3.523564 CCCCTCCTGATTTTTCTAGGTGA 59.476 47.826 0.00 0.00 33.30 4.02
76 77 4.018415 CCCCTCCTGATTTTTCTAGGTGAA 60.018 45.833 0.00 0.00 33.30 3.18
77 78 5.516591 CCCCTCCTGATTTTTCTAGGTGAAA 60.517 44.000 0.00 0.00 42.33 2.69
102 103 7.906199 ATGACCTATATACTAGAAGATGGCC 57.094 40.000 0.00 0.00 0.00 5.36
103 104 6.800890 TGACCTATATACTAGAAGATGGCCA 58.199 40.000 8.56 8.56 0.00 5.36
104 105 6.663953 TGACCTATATACTAGAAGATGGCCAC 59.336 42.308 8.16 1.58 0.00 5.01
313 314 4.069869 CTTGTGCTCACCAGGTGG 57.930 61.111 20.14 11.35 42.17 4.61
314 315 2.203337 TTGTGCTCACCAGGTGGC 60.203 61.111 20.14 20.40 39.32 5.01
315 316 3.790416 TTGTGCTCACCAGGTGGCC 62.790 63.158 20.14 14.57 39.32 5.36
325 326 4.342086 AGGTGGCCCCCTCCGTTA 62.342 66.667 0.00 0.00 41.58 3.18
326 327 3.793888 GGTGGCCCCCTCCGTTAG 61.794 72.222 0.00 0.00 0.00 2.34
327 328 3.007323 GTGGCCCCCTCCGTTAGT 61.007 66.667 0.00 0.00 0.00 2.24
328 329 2.204029 TGGCCCCCTCCGTTAGTT 60.204 61.111 0.00 0.00 0.00 2.24
329 330 1.080722 TGGCCCCCTCCGTTAGTTA 59.919 57.895 0.00 0.00 0.00 2.24
330 331 0.326808 TGGCCCCCTCCGTTAGTTAT 60.327 55.000 0.00 0.00 0.00 1.89
331 332 0.841961 GGCCCCCTCCGTTAGTTATT 59.158 55.000 0.00 0.00 0.00 1.40
332 333 1.213678 GGCCCCCTCCGTTAGTTATTT 59.786 52.381 0.00 0.00 0.00 1.40
333 334 2.294979 GCCCCCTCCGTTAGTTATTTG 58.705 52.381 0.00 0.00 0.00 2.32
334 335 2.356432 GCCCCCTCCGTTAGTTATTTGT 60.356 50.000 0.00 0.00 0.00 2.83
335 336 3.874977 GCCCCCTCCGTTAGTTATTTGTT 60.875 47.826 0.00 0.00 0.00 2.83
336 337 3.692593 CCCCCTCCGTTAGTTATTTGTTG 59.307 47.826 0.00 0.00 0.00 3.33
337 338 4.329392 CCCCTCCGTTAGTTATTTGTTGT 58.671 43.478 0.00 0.00 0.00 3.32
338 339 5.490159 CCCCTCCGTTAGTTATTTGTTGTA 58.510 41.667 0.00 0.00 0.00 2.41
339 340 5.583457 CCCCTCCGTTAGTTATTTGTTGTAG 59.417 44.000 0.00 0.00 0.00 2.74
340 341 6.168389 CCCTCCGTTAGTTATTTGTTGTAGT 58.832 40.000 0.00 0.00 0.00 2.73
341 342 7.322664 CCCTCCGTTAGTTATTTGTTGTAGTA 58.677 38.462 0.00 0.00 0.00 1.82
342 343 7.983484 CCCTCCGTTAGTTATTTGTTGTAGTAT 59.017 37.037 0.00 0.00 0.00 2.12
343 344 9.374838 CCTCCGTTAGTTATTTGTTGTAGTATT 57.625 33.333 0.00 0.00 0.00 1.89
387 388 4.783764 GGTAACTGTGGCATAGCTTTTT 57.216 40.909 11.50 0.78 0.00 1.94
388 389 4.733850 GGTAACTGTGGCATAGCTTTTTC 58.266 43.478 11.50 0.00 0.00 2.29
389 390 4.217550 GGTAACTGTGGCATAGCTTTTTCA 59.782 41.667 11.50 0.00 0.00 2.69
390 391 4.510038 AACTGTGGCATAGCTTTTTCAG 57.490 40.909 11.50 2.84 0.00 3.02
391 392 2.821969 ACTGTGGCATAGCTTTTTCAGG 59.178 45.455 11.50 0.00 0.00 3.86
392 393 1.545582 TGTGGCATAGCTTTTTCAGGC 59.454 47.619 0.00 0.00 0.00 4.85
393 394 1.134995 GTGGCATAGCTTTTTCAGGCC 60.135 52.381 2.14 2.14 40.29 5.19
394 395 0.461548 GGCATAGCTTTTTCAGGCCC 59.538 55.000 0.00 0.00 33.93 5.80
395 396 0.101219 GCATAGCTTTTTCAGGCCCG 59.899 55.000 0.00 0.00 0.00 6.13
396 397 0.740737 CATAGCTTTTTCAGGCCCGG 59.259 55.000 0.00 0.00 0.00 5.73
397 398 0.623723 ATAGCTTTTTCAGGCCCGGA 59.376 50.000 0.73 0.00 0.00 5.14
398 399 0.402504 TAGCTTTTTCAGGCCCGGAA 59.597 50.000 0.73 0.00 0.00 4.30
399 400 0.251787 AGCTTTTTCAGGCCCGGAAT 60.252 50.000 0.73 0.00 0.00 3.01
400 401 0.608130 GCTTTTTCAGGCCCGGAATT 59.392 50.000 0.73 0.00 0.00 2.17
401 402 1.404181 GCTTTTTCAGGCCCGGAATTC 60.404 52.381 0.73 0.00 0.00 2.17
402 403 1.204704 CTTTTTCAGGCCCGGAATTCC 59.795 52.381 15.01 15.01 0.00 3.01
403 404 0.113385 TTTTCAGGCCCGGAATTCCA 59.887 50.000 24.09 0.00 35.14 3.53
404 405 0.323360 TTTCAGGCCCGGAATTCCAG 60.323 55.000 24.09 13.07 35.14 3.86
405 406 1.497309 TTCAGGCCCGGAATTCCAGT 61.497 55.000 24.09 0.45 35.14 4.00
406 407 1.000896 CAGGCCCGGAATTCCAGTT 60.001 57.895 24.09 5.30 35.14 3.16
407 408 1.000896 AGGCCCGGAATTCCAGTTG 60.001 57.895 24.09 7.66 35.14 3.16
408 409 1.304134 GGCCCGGAATTCCAGTTGT 60.304 57.895 24.09 0.00 35.14 3.32
409 410 1.313091 GGCCCGGAATTCCAGTTGTC 61.313 60.000 24.09 6.82 35.14 3.18
410 411 1.644786 GCCCGGAATTCCAGTTGTCG 61.645 60.000 24.09 8.04 35.14 4.35
411 412 1.024579 CCCGGAATTCCAGTTGTCGG 61.025 60.000 24.09 16.05 35.14 4.79
412 413 1.644786 CCGGAATTCCAGTTGTCGGC 61.645 60.000 24.09 0.00 35.14 5.54
413 414 1.794222 GGAATTCCAGTTGTCGGCG 59.206 57.895 20.04 0.00 35.64 6.46
414 415 0.953960 GGAATTCCAGTTGTCGGCGT 60.954 55.000 20.04 0.00 35.64 5.68
415 416 0.872388 GAATTCCAGTTGTCGGCGTT 59.128 50.000 6.85 0.00 0.00 4.84
416 417 0.872388 AATTCCAGTTGTCGGCGTTC 59.128 50.000 6.85 2.07 0.00 3.95
417 418 0.034896 ATTCCAGTTGTCGGCGTTCT 59.965 50.000 6.85 0.00 0.00 3.01
418 419 0.599204 TTCCAGTTGTCGGCGTTCTC 60.599 55.000 6.85 0.00 0.00 2.87
419 420 1.006102 CCAGTTGTCGGCGTTCTCT 60.006 57.895 6.85 0.00 0.00 3.10
420 421 1.009389 CCAGTTGTCGGCGTTCTCTC 61.009 60.000 6.85 0.00 0.00 3.20
421 422 0.039074 CAGTTGTCGGCGTTCTCTCT 60.039 55.000 6.85 0.00 0.00 3.10
422 423 0.241481 AGTTGTCGGCGTTCTCTCTC 59.759 55.000 6.85 0.00 0.00 3.20
423 424 0.241481 GTTGTCGGCGTTCTCTCTCT 59.759 55.000 6.85 0.00 0.00 3.10
424 425 0.959553 TTGTCGGCGTTCTCTCTCTT 59.040 50.000 6.85 0.00 0.00 2.85
425 426 0.959553 TGTCGGCGTTCTCTCTCTTT 59.040 50.000 6.85 0.00 0.00 2.52
426 427 1.335964 TGTCGGCGTTCTCTCTCTTTG 60.336 52.381 6.85 0.00 0.00 2.77
427 428 0.959553 TCGGCGTTCTCTCTCTTTGT 59.040 50.000 6.85 0.00 0.00 2.83
428 429 1.063806 CGGCGTTCTCTCTCTTTGTG 58.936 55.000 0.00 0.00 0.00 3.33
429 430 1.603172 CGGCGTTCTCTCTCTTTGTGT 60.603 52.381 0.00 0.00 0.00 3.72
430 431 2.351447 CGGCGTTCTCTCTCTTTGTGTA 60.351 50.000 0.00 0.00 0.00 2.90
431 432 3.650139 GGCGTTCTCTCTCTTTGTGTAA 58.350 45.455 0.00 0.00 0.00 2.41
432 433 4.056050 GGCGTTCTCTCTCTTTGTGTAAA 58.944 43.478 0.00 0.00 0.00 2.01
433 434 4.084485 GGCGTTCTCTCTCTTTGTGTAAAC 60.084 45.833 0.00 0.00 0.00 2.01
434 435 4.084485 GCGTTCTCTCTCTTTGTGTAAACC 60.084 45.833 0.00 0.00 0.00 3.27
435 436 5.290386 CGTTCTCTCTCTTTGTGTAAACCT 58.710 41.667 0.00 0.00 0.00 3.50
436 437 5.753921 CGTTCTCTCTCTTTGTGTAAACCTT 59.246 40.000 0.00 0.00 0.00 3.50
437 438 6.292381 CGTTCTCTCTCTTTGTGTAAACCTTG 60.292 42.308 0.00 0.00 0.00 3.61
438 439 5.057149 TCTCTCTCTTTGTGTAAACCTTGC 58.943 41.667 0.00 0.00 0.00 4.01
439 440 4.776349 TCTCTCTTTGTGTAAACCTTGCA 58.224 39.130 0.00 0.00 0.00 4.08
440 441 5.376625 TCTCTCTTTGTGTAAACCTTGCAT 58.623 37.500 0.00 0.00 0.00 3.96
441 442 6.530120 TCTCTCTTTGTGTAAACCTTGCATA 58.470 36.000 0.00 0.00 0.00 3.14
442 443 7.168219 TCTCTCTTTGTGTAAACCTTGCATAT 58.832 34.615 0.00 0.00 0.00 1.78
443 444 7.665559 TCTCTCTTTGTGTAAACCTTGCATATT 59.334 33.333 0.00 0.00 0.00 1.28
444 445 8.856153 TCTCTTTGTGTAAACCTTGCATATTA 57.144 30.769 0.00 0.00 0.00 0.98
445 446 9.461312 TCTCTTTGTGTAAACCTTGCATATTAT 57.539 29.630 0.00 0.00 0.00 1.28
446 447 9.507280 CTCTTTGTGTAAACCTTGCATATTATG 57.493 33.333 0.00 0.00 0.00 1.90
447 448 9.237187 TCTTTGTGTAAACCTTGCATATTATGA 57.763 29.630 7.87 0.00 0.00 2.15
448 449 9.507280 CTTTGTGTAAACCTTGCATATTATGAG 57.493 33.333 7.87 0.00 0.00 2.90
449 450 8.800370 TTGTGTAAACCTTGCATATTATGAGA 57.200 30.769 7.87 0.00 0.00 3.27
450 451 8.437360 TGTGTAAACCTTGCATATTATGAGAG 57.563 34.615 7.87 4.26 0.00 3.20
451 452 8.264347 TGTGTAAACCTTGCATATTATGAGAGA 58.736 33.333 7.87 0.00 0.00 3.10
452 453 9.109393 GTGTAAACCTTGCATATTATGAGAGAA 57.891 33.333 7.87 0.00 0.00 2.87
453 454 9.679661 TGTAAACCTTGCATATTATGAGAGAAA 57.320 29.630 7.87 0.00 0.00 2.52
532 533 8.718102 ACAGTAGGAAAACATGATGTATACAC 57.282 34.615 7.96 3.26 0.00 2.90
533 534 7.491372 ACAGTAGGAAAACATGATGTATACACG 59.509 37.037 7.96 0.00 0.00 4.49
534 535 5.734855 AGGAAAACATGATGTATACACGC 57.265 39.130 7.96 4.18 0.00 5.34
535 536 4.270084 AGGAAAACATGATGTATACACGCG 59.730 41.667 7.96 3.53 0.00 6.01
536 537 4.033587 GGAAAACATGATGTATACACGCGT 59.966 41.667 5.58 5.58 0.00 6.01
537 538 4.514545 AAACATGATGTATACACGCGTG 57.485 40.909 35.99 35.99 0.00 5.34
538 539 1.858458 ACATGATGTATACACGCGTGC 59.142 47.619 37.35 22.00 0.00 5.34
539 540 2.127251 CATGATGTATACACGCGTGCT 58.873 47.619 37.35 26.67 0.00 4.40
540 541 2.287393 TGATGTATACACGCGTGCTT 57.713 45.000 37.35 26.46 0.00 3.91
541 542 1.923864 TGATGTATACACGCGTGCTTG 59.076 47.619 37.35 16.24 0.00 4.01
542 543 2.190161 GATGTATACACGCGTGCTTGA 58.810 47.619 37.35 21.10 0.00 3.02
543 544 2.287393 TGTATACACGCGTGCTTGAT 57.713 45.000 37.35 25.69 0.00 2.57
544 545 2.612604 TGTATACACGCGTGCTTGATT 58.387 42.857 37.35 20.23 0.00 2.57
545 546 2.997303 TGTATACACGCGTGCTTGATTT 59.003 40.909 37.35 19.49 0.00 2.17
546 547 3.433957 TGTATACACGCGTGCTTGATTTT 59.566 39.130 37.35 18.73 0.00 1.82
547 548 2.308347 TACACGCGTGCTTGATTTTG 57.692 45.000 37.35 11.86 0.00 2.44
548 549 0.317770 ACACGCGTGCTTGATTTTGG 60.318 50.000 37.35 11.23 0.00 3.28
549 550 1.003262 CACGCGTGCTTGATTTTGGG 61.003 55.000 28.16 0.00 0.00 4.12
550 551 1.169661 ACGCGTGCTTGATTTTGGGA 61.170 50.000 12.93 0.00 0.00 4.37
551 552 0.039617 CGCGTGCTTGATTTTGGGAA 60.040 50.000 0.00 0.00 0.00 3.97
552 553 1.402720 CGCGTGCTTGATTTTGGGAAT 60.403 47.619 0.00 0.00 0.00 3.01
553 554 2.159448 CGCGTGCTTGATTTTGGGAATA 60.159 45.455 0.00 0.00 0.00 1.75
554 555 3.179048 GCGTGCTTGATTTTGGGAATAC 58.821 45.455 0.00 0.00 0.00 1.89
555 556 3.366883 GCGTGCTTGATTTTGGGAATACA 60.367 43.478 0.00 0.00 0.00 2.29
556 557 4.677779 GCGTGCTTGATTTTGGGAATACAT 60.678 41.667 0.00 0.00 0.00 2.29
557 558 5.410067 CGTGCTTGATTTTGGGAATACATT 58.590 37.500 0.00 0.00 0.00 2.71
558 559 5.868801 CGTGCTTGATTTTGGGAATACATTT 59.131 36.000 0.00 0.00 0.00 2.32
559 560 6.034898 CGTGCTTGATTTTGGGAATACATTTC 59.965 38.462 0.00 0.00 0.00 2.17
560 561 6.034898 GTGCTTGATTTTGGGAATACATTTCG 59.965 38.462 0.00 0.00 0.00 3.46
561 562 6.071672 TGCTTGATTTTGGGAATACATTTCGA 60.072 34.615 0.00 0.00 0.00 3.71
562 563 6.473455 GCTTGATTTTGGGAATACATTTCGAG 59.527 38.462 0.00 0.00 0.00 4.04
563 564 5.890334 TGATTTTGGGAATACATTTCGAGC 58.110 37.500 0.00 0.00 0.00 5.03
564 565 4.712122 TTTTGGGAATACATTTCGAGCC 57.288 40.909 0.00 0.00 0.00 4.70
565 566 1.948104 TGGGAATACATTTCGAGCCG 58.052 50.000 0.00 0.00 0.00 5.52
566 567 1.226746 GGGAATACATTTCGAGCCGG 58.773 55.000 0.00 0.00 0.00 6.13
567 568 0.586802 GGAATACATTTCGAGCCGGC 59.413 55.000 21.89 21.89 0.00 6.13
568 569 1.295792 GAATACATTTCGAGCCGGCA 58.704 50.000 31.54 7.75 0.00 5.69
569 570 1.668751 GAATACATTTCGAGCCGGCAA 59.331 47.619 31.54 15.05 0.00 4.52
570 571 1.299541 ATACATTTCGAGCCGGCAAG 58.700 50.000 31.54 21.97 0.00 4.01
691 696 3.067106 ACTACGCCAAGAGTGAAATGTG 58.933 45.455 0.00 0.00 0.00 3.21
712 718 2.009051 CAAAGCGCACTATGATGTCCA 58.991 47.619 11.47 0.00 0.00 4.02
755 761 4.465305 CCCTTCTTTTTCTCCAGCAATCAT 59.535 41.667 0.00 0.00 0.00 2.45
774 780 3.745975 TCATTTTTGTGAGCACTACCGAG 59.254 43.478 1.99 0.00 0.00 4.63
797 803 4.342092 GCCAAACCAGGATATTATGCAGTT 59.658 41.667 0.00 0.00 0.00 3.16
818 825 2.502213 AAAAAGACGGAAAAAGGCGG 57.498 45.000 0.00 0.00 0.00 6.13
840 847 2.310233 CGGCCACAGAATATCGCGG 61.310 63.158 6.13 0.00 0.00 6.46
844 851 1.951130 CACAGAATATCGCGGCGCT 60.951 57.895 30.54 15.05 0.00 5.92
1012 1019 0.975887 TCCATATATGCGCTCTGCCA 59.024 50.000 9.73 0.00 45.60 4.92
1064 1099 1.837439 TCCGAGCTCTCTCTCTCTCTT 59.163 52.381 12.85 0.00 37.19 2.85
1065 1100 2.158957 TCCGAGCTCTCTCTCTCTCTTC 60.159 54.545 12.85 0.00 37.19 2.87
1066 1101 2.158900 CCGAGCTCTCTCTCTCTCTTCT 60.159 54.545 12.85 0.00 37.19 2.85
1067 1102 3.126831 CGAGCTCTCTCTCTCTCTTCTC 58.873 54.545 12.85 0.00 37.19 2.87
1068 1103 3.181471 CGAGCTCTCTCTCTCTCTTCTCT 60.181 52.174 12.85 0.00 37.19 3.10
1072 1107 4.813697 GCTCTCTCTCTCTCTTCTCTTCTC 59.186 50.000 0.00 0.00 0.00 2.87
1108 1143 1.227292 GTCCTCCGCGGGAATCTTC 60.227 63.158 27.83 6.07 37.10 2.87
1273 1330 1.980772 CGAGGTAACACCCCCGACT 60.981 63.158 2.68 0.00 39.75 4.18
1274 1331 1.895966 GAGGTAACACCCCCGACTC 59.104 63.158 0.00 0.00 39.75 3.36
1290 1347 2.261729 GACTCTCCCTTCTCCAGGTTT 58.738 52.381 0.00 0.00 42.02 3.27
1338 1395 1.657094 GTCTCGTGTTCGTGTGTTTGT 59.343 47.619 0.00 0.00 38.33 2.83
1342 1399 1.395608 CGTGTTCGTGTGTTTGTTCCT 59.604 47.619 0.00 0.00 0.00 3.36
1344 1401 1.131504 TGTTCGTGTGTTTGTTCCTGC 59.868 47.619 0.00 0.00 0.00 4.85
1389 1446 4.090057 GGGACTGCGCGCAAACTC 62.090 66.667 35.50 25.99 0.00 3.01
1430 1547 1.673168 CCTGAAATCCTACAGCCAGC 58.327 55.000 0.00 0.00 33.40 4.85
1584 1760 9.238368 TCTTTATTAAAGTTGATGGTGTAAGGG 57.762 33.333 14.28 0.00 39.52 3.95
1587 1763 4.993705 AAAGTTGATGGTGTAAGGGAGA 57.006 40.909 0.00 0.00 0.00 3.71
1605 1781 4.443598 GGGAGAGAGGTCAAATACATCCAC 60.444 50.000 0.00 0.00 39.78 4.02
1778 1959 1.339711 CGCCTTTTCTTTCGCATTGG 58.660 50.000 0.00 0.00 0.00 3.16
1876 2057 7.173218 CGGGATATAAATATGTCAAACTGCACT 59.827 37.037 0.00 0.00 0.00 4.40
1912 2093 6.909909 AGTCTACCCTGCGAAAAATAAAAAG 58.090 36.000 0.00 0.00 0.00 2.27
1994 2175 4.387256 CCTTGTCTGAGATTCAAACGACTC 59.613 45.833 0.00 0.00 0.00 3.36
2050 2231 2.704596 AGCATACCATCTGTGCATCTCT 59.295 45.455 0.00 0.00 39.44 3.10
2057 2243 4.080695 ACCATCTGTGCATCTCTGTTACAT 60.081 41.667 0.00 0.00 0.00 2.29
2058 2244 4.272748 CCATCTGTGCATCTCTGTTACATG 59.727 45.833 0.00 0.00 0.00 3.21
2059 2245 3.264947 TCTGTGCATCTCTGTTACATGC 58.735 45.455 2.12 2.12 42.81 4.06
2161 2985 7.383102 TCTTCTTTTCTTCAGATTACATGCC 57.617 36.000 0.00 0.00 0.00 4.40
2165 2989 8.181904 TCTTTTCTTCAGATTACATGCCTTTT 57.818 30.769 0.00 0.00 0.00 2.27
2184 3008 6.543736 CCTTTTATCGCTCCAGTTTCTTAAC 58.456 40.000 0.00 0.00 34.36 2.01
2213 3037 6.183360 GGCTTGACCTGATGATAAACTTGTAC 60.183 42.308 0.00 0.00 34.51 2.90
2329 3153 2.398498 CGTGACAGACTTTCAGTCCAG 58.602 52.381 0.09 0.00 46.18 3.86
2335 3159 3.126831 CAGACTTTCAGTCCAGTGTCAC 58.873 50.000 0.00 0.00 46.18 3.67
2430 3330 3.678072 TGCTACTTCTTTTGTCGAATCCG 59.322 43.478 0.00 0.00 37.07 4.18
2533 3433 2.108168 TCCATCCTAAAGAGTGTCCCG 58.892 52.381 0.00 0.00 0.00 5.14
2598 3498 0.253044 TCTAAAAGAGCTGGCGGCAT 59.747 50.000 22.28 5.55 44.79 4.40
2727 3627 2.713167 CTGGTATCATGGTCCCCAAGAT 59.287 50.000 6.29 6.29 43.21 2.40
2887 3787 4.336889 TCCCTTGCAAGAATACCTATCG 57.663 45.455 28.05 6.54 0.00 2.92
3052 3962 8.037758 TGCTTCACCATGTTTTCTTTTCTTTAA 58.962 29.630 0.00 0.00 0.00 1.52
3144 4054 3.130734 TGGGTTTCACCTCTAGCCTAT 57.869 47.619 0.00 0.00 38.64 2.57
3203 4113 9.793259 TGTTGAACCTGAAATAAGATCTTAAGT 57.207 29.630 18.79 9.77 0.00 2.24
3375 4325 7.808381 GGAGACAAGTTAACTTTATGCCTTTTC 59.192 37.037 18.25 2.35 33.11 2.29
3392 4342 5.234329 GCCTTTTCACCTTTAAGTTTGCTTC 59.766 40.000 0.00 0.00 36.22 3.86
3394 4344 7.041721 CCTTTTCACCTTTAAGTTTGCTTCTT 58.958 34.615 0.00 0.00 36.22 2.52
3823 4775 9.434559 GTACAAGTTCAACTCTGTTTAATTGTC 57.565 33.333 9.66 3.02 0.00 3.18
3970 4922 3.569701 GCCCTTCAAGTGACAAAAGATGA 59.430 43.478 0.00 0.00 0.00 2.92
4007 4959 1.556911 AGTTCCATCAACCTGCTCGAT 59.443 47.619 0.00 0.00 35.28 3.59
4053 5005 1.471287 TCAGTTCCCGTACATCTGTCG 59.529 52.381 0.00 0.00 0.00 4.35
4271 5226 7.848128 TCTAGTTTCCTCATACCTACCTTTTG 58.152 38.462 0.00 0.00 0.00 2.44
4339 5294 6.980051 AAGAAACCCGAGATACACAAATAC 57.020 37.500 0.00 0.00 0.00 1.89
4379 5334 6.214412 AGTTCTCAGACTTTCTGGAATATGGT 59.786 38.462 3.40 0.00 44.39 3.55
4383 5338 7.619698 TCTCAGACTTTCTGGAATATGGTAAGA 59.380 37.037 3.40 0.00 44.39 2.10
4411 5366 4.261489 GGATTTGTCTGGCATCATGATCAC 60.261 45.833 4.86 2.11 0.00 3.06
4412 5367 1.944032 TGTCTGGCATCATGATCACG 58.056 50.000 4.86 0.00 0.00 4.35
4667 5933 3.229276 TGCAAAATGTCGGCAAATAGG 57.771 42.857 0.00 0.00 34.05 2.57
4675 5941 4.209307 TGTCGGCAAATAGGACATACAA 57.791 40.909 0.00 0.00 35.89 2.41
4679 5945 6.824196 TGTCGGCAAATAGGACATACAAATAA 59.176 34.615 0.00 0.00 35.89 1.40
4739 6006 0.248289 TACCGTGTTCTTGGCTAGGC 59.752 55.000 9.85 9.85 0.00 3.93
4780 6047 1.870402 TGTCACACAAGCGTTACCATG 59.130 47.619 0.00 0.00 0.00 3.66
4797 6064 8.889717 CGTTACCATGTGAATATTTAGTCCTTT 58.110 33.333 0.00 0.00 0.00 3.11
4813 6091 9.801873 TTTAGTCCTTTGAAGTCAAATTTCTTG 57.198 29.630 6.92 0.00 43.92 3.02
4846 6127 4.568359 CAGTGGAGTCCTATTTGATCAACG 59.432 45.833 7.89 0.00 0.00 4.10
5045 6326 4.150897 ACAAGCTTGTTTACACTCTCCA 57.849 40.909 26.36 0.00 38.47 3.86
5193 6474 1.875813 GACAGATCTGCAGTCCGCG 60.876 63.158 22.83 0.00 46.97 6.46
5282 6563 8.673711 CGGAGATGAAACAGTGGAAATTAATAA 58.326 33.333 0.00 0.00 0.00 1.40
5301 6582 3.560636 AACTATGCCCAGTCGCTTAAT 57.439 42.857 0.00 0.00 0.00 1.40
5360 6641 7.066043 AGTGAGGAGATACAAGAGTAAGTTACG 59.934 40.741 7.38 0.00 33.13 3.18
5362 6643 7.065563 TGAGGAGATACAAGAGTAAGTTACGTC 59.934 40.741 7.38 6.01 33.13 4.34
5394 6720 2.645730 TTCGTGTTTTGCTGCTTGTT 57.354 40.000 0.00 0.00 0.00 2.83
5466 6792 4.460382 CCATTTCGGGCATTCATATAGCTT 59.540 41.667 0.00 0.00 0.00 3.74
5476 6802 7.201679 GGGCATTCATATAGCTTACAGCAATAG 60.202 40.741 0.00 0.00 45.56 1.73
5490 6816 6.809630 ACAGCAATAGGAAACTCTCTTTTC 57.190 37.500 0.00 0.00 43.67 2.29
5627 6954 1.007011 CGCGCAACTACTCAAGAATCG 60.007 52.381 8.75 0.00 0.00 3.34
5808 7135 3.047039 AAGCACCTGCATTCTGCTT 57.953 47.368 16.10 16.10 45.31 3.91
5812 7139 1.747355 GCACCTGCATTCTGCTTGTAT 59.253 47.619 0.34 0.00 45.31 2.29
5823 7150 0.251297 TGCTTGTATTGGCCTGTGCT 60.251 50.000 3.32 0.00 37.74 4.40
5901 7228 3.075186 GGGGGCCGTTAGACTTGT 58.925 61.111 0.00 0.00 0.00 3.16
6056 7418 2.171940 CAAGCGCAAGTGCTCGAC 59.828 61.111 11.47 0.00 46.60 4.20
6072 7434 5.004821 GTGCTCGACATTTCATACAGTACTG 59.995 44.000 21.44 21.44 0.00 2.74
6090 7452 1.132453 CTGCATTGCTGAGTGGTGATG 59.868 52.381 10.49 0.00 0.00 3.07
6123 7485 5.906113 TGTTGTCTTACCATTGTTGTGTT 57.094 34.783 0.00 0.00 0.00 3.32
6124 7486 6.274157 TGTTGTCTTACCATTGTTGTGTTT 57.726 33.333 0.00 0.00 0.00 2.83
6125 7487 6.096036 TGTTGTCTTACCATTGTTGTGTTTG 58.904 36.000 0.00 0.00 0.00 2.93
6126 7488 5.906113 TGTCTTACCATTGTTGTGTTTGT 57.094 34.783 0.00 0.00 0.00 2.83
6127 7489 5.645624 TGTCTTACCATTGTTGTGTTTGTG 58.354 37.500 0.00 0.00 0.00 3.33
6128 7490 5.184096 TGTCTTACCATTGTTGTGTTTGTGT 59.816 36.000 0.00 0.00 0.00 3.72
6179 7542 2.336554 ATGTGTGCGCTGTGAAAATC 57.663 45.000 9.73 0.00 0.00 2.17
6258 7629 4.035909 GTGTGGTGTCTTATTTTTGGACGT 59.964 41.667 0.00 0.00 33.21 4.34
6432 7805 4.936802 ACAAGTACTACTCATCTCCACCT 58.063 43.478 0.00 0.00 0.00 4.00
6576 7950 5.765677 TGTAGTTGTAAAAGCATGGCAACTA 59.234 36.000 10.27 10.27 45.12 2.24
6679 8053 7.065803 GTGTGATTAACTACTTGCCACATATGT 59.934 37.037 1.41 1.41 35.83 2.29
6757 8139 5.543714 AGTTGTCATGTACGGTTAATCACA 58.456 37.500 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.747855 CGGAACTTGGGCAGGAGC 60.748 66.667 0.00 0.00 41.10 4.70
5 6 2.747855 GCGGAACTTGGGCAGGAG 60.748 66.667 0.00 0.00 0.00 3.69
6 7 4.344865 GGCGGAACTTGGGCAGGA 62.345 66.667 0.00 0.00 0.00 3.86
7 8 4.351054 AGGCGGAACTTGGGCAGG 62.351 66.667 0.00 0.00 0.00 4.85
8 9 2.747855 GAGGCGGAACTTGGGCAG 60.748 66.667 0.00 0.00 0.00 4.85
9 10 4.697756 CGAGGCGGAACTTGGGCA 62.698 66.667 0.00 0.00 0.00 5.36
10 11 4.388499 TCGAGGCGGAACTTGGGC 62.388 66.667 0.00 0.00 0.00 5.36
11 12 2.125512 CTCGAGGCGGAACTTGGG 60.126 66.667 3.91 0.00 0.00 4.12
12 13 1.446272 GTCTCGAGGCGGAACTTGG 60.446 63.158 13.56 0.00 0.00 3.61
13 14 1.801913 CGTCTCGAGGCGGAACTTG 60.802 63.158 30.92 1.00 0.00 3.16
14 15 2.567049 CGTCTCGAGGCGGAACTT 59.433 61.111 30.92 0.00 0.00 2.66
42 43 1.612739 AGGAGGGGACTTTCGGGAC 60.613 63.158 0.00 0.00 44.43 4.46
43 44 1.612442 CAGGAGGGGACTTTCGGGA 60.612 63.158 0.00 0.00 44.43 5.14
44 45 0.983378 ATCAGGAGGGGACTTTCGGG 60.983 60.000 0.00 0.00 44.43 5.14
45 46 0.912486 AATCAGGAGGGGACTTTCGG 59.088 55.000 0.00 0.00 44.43 4.30
46 47 2.789409 AAATCAGGAGGGGACTTTCG 57.211 50.000 0.00 0.00 44.43 3.46
47 48 4.667573 AGAAAAATCAGGAGGGGACTTTC 58.332 43.478 0.00 0.00 44.43 2.62
48 49 4.749048 AGAAAAATCAGGAGGGGACTTT 57.251 40.909 0.00 0.00 44.43 2.66
49 50 4.228438 CCTAGAAAAATCAGGAGGGGACTT 59.772 45.833 0.00 0.00 44.43 3.01
51 52 3.523972 ACCTAGAAAAATCAGGAGGGGAC 59.476 47.826 0.00 0.00 33.44 4.46
52 53 3.523564 CACCTAGAAAAATCAGGAGGGGA 59.476 47.826 0.00 0.00 33.44 4.81
53 54 3.523564 TCACCTAGAAAAATCAGGAGGGG 59.476 47.826 0.00 0.00 33.44 4.79
54 55 4.844349 TCACCTAGAAAAATCAGGAGGG 57.156 45.455 0.00 0.00 33.44 4.30
76 77 8.763601 GGCCATCTTCTAGTATATAGGTCATTT 58.236 37.037 0.00 0.00 0.00 2.32
77 78 7.901322 TGGCCATCTTCTAGTATATAGGTCATT 59.099 37.037 0.00 0.00 0.00 2.57
78 79 7.343316 GTGGCCATCTTCTAGTATATAGGTCAT 59.657 40.741 9.72 0.00 30.25 3.06
79 80 6.663953 GTGGCCATCTTCTAGTATATAGGTCA 59.336 42.308 9.72 0.00 0.00 4.02
80 81 7.102847 GTGGCCATCTTCTAGTATATAGGTC 57.897 44.000 9.72 0.00 0.00 3.85
296 297 2.263741 GCCACCTGGTGAGCACAAG 61.264 63.158 27.94 10.28 35.23 3.16
297 298 2.203337 GCCACCTGGTGAGCACAA 60.203 61.111 27.94 0.00 35.23 3.33
298 299 4.269523 GGCCACCTGGTGAGCACA 62.270 66.667 27.94 0.00 35.23 4.57
308 309 4.342086 TAACGGAGGGGGCCACCT 62.342 66.667 32.16 32.16 45.57 4.00
309 310 3.793888 CTAACGGAGGGGGCCACC 61.794 72.222 19.64 19.64 39.11 4.61
310 311 1.266867 TAACTAACGGAGGGGGCCAC 61.267 60.000 4.39 0.00 0.00 5.01
311 312 0.326808 ATAACTAACGGAGGGGGCCA 60.327 55.000 4.39 0.00 0.00 5.36
312 313 0.841961 AATAACTAACGGAGGGGGCC 59.158 55.000 0.00 0.00 0.00 5.80
313 314 2.294979 CAAATAACTAACGGAGGGGGC 58.705 52.381 0.00 0.00 0.00 5.80
314 315 3.639672 ACAAATAACTAACGGAGGGGG 57.360 47.619 0.00 0.00 0.00 5.40
315 316 4.329392 ACAACAAATAACTAACGGAGGGG 58.671 43.478 0.00 0.00 0.00 4.79
316 317 6.168389 ACTACAACAAATAACTAACGGAGGG 58.832 40.000 0.00 0.00 0.00 4.30
317 318 8.937634 ATACTACAACAAATAACTAACGGAGG 57.062 34.615 0.00 0.00 0.00 4.30
349 350 9.764363 CACAGTTACCTATTCTGCAGAAATATA 57.236 33.333 31.55 18.66 37.61 0.86
350 351 7.716998 CCACAGTTACCTATTCTGCAGAAATAT 59.283 37.037 31.55 18.54 37.61 1.28
351 352 7.047891 CCACAGTTACCTATTCTGCAGAAATA 58.952 38.462 31.55 21.14 37.61 1.40
352 353 5.882557 CCACAGTTACCTATTCTGCAGAAAT 59.117 40.000 31.55 21.16 37.61 2.17
353 354 5.245531 CCACAGTTACCTATTCTGCAGAAA 58.754 41.667 31.55 19.21 37.61 2.52
354 355 4.832248 CCACAGTTACCTATTCTGCAGAA 58.168 43.478 30.23 30.23 38.56 3.02
355 356 3.369471 GCCACAGTTACCTATTCTGCAGA 60.369 47.826 13.74 13.74 33.12 4.26
356 357 2.939103 GCCACAGTTACCTATTCTGCAG 59.061 50.000 7.63 7.63 33.12 4.41
357 358 2.304470 TGCCACAGTTACCTATTCTGCA 59.696 45.455 0.00 0.00 33.12 4.41
358 359 2.985896 TGCCACAGTTACCTATTCTGC 58.014 47.619 0.00 0.00 33.12 4.26
359 360 4.752101 GCTATGCCACAGTTACCTATTCTG 59.248 45.833 0.00 0.00 35.60 3.02
360 361 4.656112 AGCTATGCCACAGTTACCTATTCT 59.344 41.667 0.00 0.00 0.00 2.40
361 362 4.962155 AGCTATGCCACAGTTACCTATTC 58.038 43.478 0.00 0.00 0.00 1.75
362 363 5.373812 AAGCTATGCCACAGTTACCTATT 57.626 39.130 0.00 0.00 0.00 1.73
363 364 5.373812 AAAGCTATGCCACAGTTACCTAT 57.626 39.130 0.00 0.00 0.00 2.57
364 365 4.837093 AAAGCTATGCCACAGTTACCTA 57.163 40.909 0.00 0.00 0.00 3.08
365 366 3.721087 AAAGCTATGCCACAGTTACCT 57.279 42.857 0.00 0.00 0.00 3.08
366 367 4.217550 TGAAAAAGCTATGCCACAGTTACC 59.782 41.667 0.00 0.00 0.00 2.85
367 368 5.371115 TGAAAAAGCTATGCCACAGTTAC 57.629 39.130 0.00 0.00 0.00 2.50
368 369 4.458989 CCTGAAAAAGCTATGCCACAGTTA 59.541 41.667 0.00 0.00 0.00 2.24
369 370 3.256631 CCTGAAAAAGCTATGCCACAGTT 59.743 43.478 0.00 0.00 0.00 3.16
370 371 2.821969 CCTGAAAAAGCTATGCCACAGT 59.178 45.455 0.00 0.00 0.00 3.55
371 372 2.416431 GCCTGAAAAAGCTATGCCACAG 60.416 50.000 0.00 0.00 0.00 3.66
372 373 1.545582 GCCTGAAAAAGCTATGCCACA 59.454 47.619 0.00 0.00 0.00 4.17
373 374 1.134995 GGCCTGAAAAAGCTATGCCAC 60.135 52.381 0.00 0.00 37.36 5.01
374 375 1.185315 GGCCTGAAAAAGCTATGCCA 58.815 50.000 0.00 0.00 37.36 4.92
375 376 0.461548 GGGCCTGAAAAAGCTATGCC 59.538 55.000 0.84 0.00 36.68 4.40
376 377 0.101219 CGGGCCTGAAAAAGCTATGC 59.899 55.000 5.28 0.00 0.00 3.14
377 378 0.740737 CCGGGCCTGAAAAAGCTATG 59.259 55.000 15.09 0.00 0.00 2.23
378 379 0.623723 TCCGGGCCTGAAAAAGCTAT 59.376 50.000 15.09 0.00 0.00 2.97
379 380 0.402504 TTCCGGGCCTGAAAAAGCTA 59.597 50.000 15.09 0.00 0.00 3.32
380 381 0.251787 ATTCCGGGCCTGAAAAAGCT 60.252 50.000 15.09 0.00 0.00 3.74
381 382 0.608130 AATTCCGGGCCTGAAAAAGC 59.392 50.000 15.09 0.00 0.00 3.51
382 383 1.204704 GGAATTCCGGGCCTGAAAAAG 59.795 52.381 15.09 0.00 0.00 2.27
383 384 1.262417 GGAATTCCGGGCCTGAAAAA 58.738 50.000 15.09 4.71 0.00 1.94
384 385 0.113385 TGGAATTCCGGGCCTGAAAA 59.887 50.000 19.57 7.54 39.43 2.29
385 386 0.323360 CTGGAATTCCGGGCCTGAAA 60.323 55.000 23.77 0.00 38.76 2.69
386 387 1.302949 CTGGAATTCCGGGCCTGAA 59.697 57.895 23.77 12.99 38.76 3.02
387 388 1.497309 AACTGGAATTCCGGGCCTGA 61.497 55.000 32.12 8.13 46.75 3.86
388 389 1.000896 AACTGGAATTCCGGGCCTG 60.001 57.895 32.12 3.88 46.75 4.85
389 390 1.000896 CAACTGGAATTCCGGGCCT 60.001 57.895 32.12 16.49 46.75 5.19
390 391 1.304134 ACAACTGGAATTCCGGGCC 60.304 57.895 32.12 5.73 46.75 5.80
391 392 1.644786 CGACAACTGGAATTCCGGGC 61.645 60.000 32.12 17.24 46.75 6.13
392 393 1.024579 CCGACAACTGGAATTCCGGG 61.025 60.000 32.12 22.60 46.75 5.73
394 395 1.794222 GCCGACAACTGGAATTCCG 59.206 57.895 19.57 15.78 39.43 4.30
395 396 0.953960 ACGCCGACAACTGGAATTCC 60.954 55.000 18.17 18.17 0.00 3.01
396 397 0.872388 AACGCCGACAACTGGAATTC 59.128 50.000 0.00 0.00 0.00 2.17
397 398 0.872388 GAACGCCGACAACTGGAATT 59.128 50.000 0.00 0.00 0.00 2.17
398 399 0.034896 AGAACGCCGACAACTGGAAT 59.965 50.000 0.00 0.00 0.00 3.01
399 400 0.599204 GAGAACGCCGACAACTGGAA 60.599 55.000 0.00 0.00 0.00 3.53
400 401 1.006571 GAGAACGCCGACAACTGGA 60.007 57.895 0.00 0.00 0.00 3.86
401 402 1.006102 AGAGAACGCCGACAACTGG 60.006 57.895 0.00 0.00 0.00 4.00
402 403 0.039074 AGAGAGAACGCCGACAACTG 60.039 55.000 0.00 0.00 0.00 3.16
403 404 0.241481 GAGAGAGAACGCCGACAACT 59.759 55.000 0.00 0.00 0.00 3.16
404 405 0.241481 AGAGAGAGAACGCCGACAAC 59.759 55.000 0.00 0.00 0.00 3.32
405 406 0.959553 AAGAGAGAGAACGCCGACAA 59.040 50.000 0.00 0.00 0.00 3.18
406 407 0.959553 AAAGAGAGAGAACGCCGACA 59.040 50.000 0.00 0.00 0.00 4.35
407 408 1.336056 ACAAAGAGAGAGAACGCCGAC 60.336 52.381 0.00 0.00 0.00 4.79
408 409 0.959553 ACAAAGAGAGAGAACGCCGA 59.040 50.000 0.00 0.00 0.00 5.54
409 410 1.063806 CACAAAGAGAGAGAACGCCG 58.936 55.000 0.00 0.00 0.00 6.46
410 411 2.156343 ACACAAAGAGAGAGAACGCC 57.844 50.000 0.00 0.00 0.00 5.68
411 412 4.084485 GGTTTACACAAAGAGAGAGAACGC 60.084 45.833 0.00 0.00 0.00 4.84
412 413 5.290386 AGGTTTACACAAAGAGAGAGAACG 58.710 41.667 0.00 0.00 0.00 3.95
413 414 6.511929 GCAAGGTTTACACAAAGAGAGAGAAC 60.512 42.308 0.00 0.00 0.00 3.01
414 415 5.527582 GCAAGGTTTACACAAAGAGAGAGAA 59.472 40.000 0.00 0.00 0.00 2.87
415 416 5.057149 GCAAGGTTTACACAAAGAGAGAGA 58.943 41.667 0.00 0.00 0.00 3.10
416 417 4.816385 TGCAAGGTTTACACAAAGAGAGAG 59.184 41.667 0.00 0.00 0.00 3.20
417 418 4.776349 TGCAAGGTTTACACAAAGAGAGA 58.224 39.130 0.00 0.00 0.00 3.10
418 419 5.695851 ATGCAAGGTTTACACAAAGAGAG 57.304 39.130 0.00 0.00 0.00 3.20
419 420 7.759489 AATATGCAAGGTTTACACAAAGAGA 57.241 32.000 0.00 0.00 0.00 3.10
420 421 9.507280 CATAATATGCAAGGTTTACACAAAGAG 57.493 33.333 0.00 0.00 0.00 2.85
421 422 9.237187 TCATAATATGCAAGGTTTACACAAAGA 57.763 29.630 0.00 0.00 0.00 2.52
422 423 9.507280 CTCATAATATGCAAGGTTTACACAAAG 57.493 33.333 0.00 0.00 0.00 2.77
423 424 9.237187 TCTCATAATATGCAAGGTTTACACAAA 57.763 29.630 0.00 0.00 0.00 2.83
424 425 8.800370 TCTCATAATATGCAAGGTTTACACAA 57.200 30.769 0.00 0.00 0.00 3.33
425 426 8.264347 TCTCTCATAATATGCAAGGTTTACACA 58.736 33.333 0.00 0.00 0.00 3.72
426 427 8.662781 TCTCTCATAATATGCAAGGTTTACAC 57.337 34.615 0.00 0.00 0.00 2.90
427 428 9.679661 TTTCTCTCATAATATGCAAGGTTTACA 57.320 29.630 0.00 0.00 0.00 2.41
506 507 9.162764 GTGTATACATCATGTTTTCCTACTGTT 57.837 33.333 9.18 0.00 0.00 3.16
507 508 7.491372 CGTGTATACATCATGTTTTCCTACTGT 59.509 37.037 9.18 0.00 0.00 3.55
508 509 7.516785 GCGTGTATACATCATGTTTTCCTACTG 60.517 40.741 9.18 0.00 0.00 2.74
509 510 6.479001 GCGTGTATACATCATGTTTTCCTACT 59.521 38.462 9.18 0.00 0.00 2.57
510 511 6.561533 CGCGTGTATACATCATGTTTTCCTAC 60.562 42.308 9.18 0.00 0.00 3.18
511 512 5.460748 CGCGTGTATACATCATGTTTTCCTA 59.539 40.000 9.18 0.00 0.00 2.94
512 513 4.270084 CGCGTGTATACATCATGTTTTCCT 59.730 41.667 9.18 0.00 0.00 3.36
513 514 4.033587 ACGCGTGTATACATCATGTTTTCC 59.966 41.667 12.93 0.00 0.00 3.13
514 515 4.955590 CACGCGTGTATACATCATGTTTTC 59.044 41.667 30.50 0.00 0.00 2.29
515 516 4.726591 GCACGCGTGTATACATCATGTTTT 60.727 41.667 36.80 0.00 0.00 2.43
516 517 3.242284 GCACGCGTGTATACATCATGTTT 60.242 43.478 36.80 0.00 0.00 2.83
517 518 2.284150 GCACGCGTGTATACATCATGTT 59.716 45.455 36.80 0.00 0.00 2.71
518 519 1.858458 GCACGCGTGTATACATCATGT 59.142 47.619 36.80 0.00 0.00 3.21
519 520 2.127251 AGCACGCGTGTATACATCATG 58.873 47.619 36.80 10.74 0.00 3.07
520 521 2.509052 AGCACGCGTGTATACATCAT 57.491 45.000 36.80 11.69 0.00 2.45
521 522 1.923864 CAAGCACGCGTGTATACATCA 59.076 47.619 36.80 0.00 0.00 3.07
522 523 2.190161 TCAAGCACGCGTGTATACATC 58.810 47.619 36.80 20.21 0.00 3.06
523 524 2.287393 TCAAGCACGCGTGTATACAT 57.713 45.000 36.80 13.41 0.00 2.29
524 525 2.287393 ATCAAGCACGCGTGTATACA 57.713 45.000 36.80 19.50 0.00 2.29
525 526 3.651562 AAATCAAGCACGCGTGTATAC 57.348 42.857 36.80 22.00 0.00 1.47
526 527 3.181515 CCAAAATCAAGCACGCGTGTATA 60.182 43.478 36.80 21.69 0.00 1.47
527 528 2.414029 CCAAAATCAAGCACGCGTGTAT 60.414 45.455 36.80 24.63 0.00 2.29
528 529 1.069568 CCAAAATCAAGCACGCGTGTA 60.070 47.619 36.80 21.70 0.00 2.90
529 530 0.317770 CCAAAATCAAGCACGCGTGT 60.318 50.000 36.80 22.42 0.00 4.49
530 531 1.003262 CCCAAAATCAAGCACGCGTG 61.003 55.000 34.01 34.01 0.00 5.34
531 532 1.169661 TCCCAAAATCAAGCACGCGT 61.170 50.000 5.58 5.58 0.00 6.01
532 533 0.039617 TTCCCAAAATCAAGCACGCG 60.040 50.000 3.53 3.53 0.00 6.01
533 534 2.368655 ATTCCCAAAATCAAGCACGC 57.631 45.000 0.00 0.00 0.00 5.34
534 535 4.433186 TGTATTCCCAAAATCAAGCACG 57.567 40.909 0.00 0.00 0.00 5.34
535 536 6.034898 CGAAATGTATTCCCAAAATCAAGCAC 59.965 38.462 0.00 0.00 0.00 4.40
536 537 6.071672 TCGAAATGTATTCCCAAAATCAAGCA 60.072 34.615 0.00 0.00 0.00 3.91
537 538 6.329496 TCGAAATGTATTCCCAAAATCAAGC 58.671 36.000 0.00 0.00 0.00 4.01
538 539 6.473455 GCTCGAAATGTATTCCCAAAATCAAG 59.527 38.462 0.00 0.00 0.00 3.02
539 540 6.329496 GCTCGAAATGTATTCCCAAAATCAA 58.671 36.000 0.00 0.00 0.00 2.57
540 541 5.163561 GGCTCGAAATGTATTCCCAAAATCA 60.164 40.000 0.00 0.00 0.00 2.57
541 542 5.281727 GGCTCGAAATGTATTCCCAAAATC 58.718 41.667 0.00 0.00 0.00 2.17
542 543 4.202010 CGGCTCGAAATGTATTCCCAAAAT 60.202 41.667 0.00 0.00 0.00 1.82
543 544 3.127895 CGGCTCGAAATGTATTCCCAAAA 59.872 43.478 0.00 0.00 0.00 2.44
544 545 2.680841 CGGCTCGAAATGTATTCCCAAA 59.319 45.455 0.00 0.00 0.00 3.28
545 546 2.285083 CGGCTCGAAATGTATTCCCAA 58.715 47.619 0.00 0.00 0.00 4.12
546 547 1.474320 CCGGCTCGAAATGTATTCCCA 60.474 52.381 0.00 0.00 0.00 4.37
547 548 1.226746 CCGGCTCGAAATGTATTCCC 58.773 55.000 0.00 0.00 0.00 3.97
548 549 0.586802 GCCGGCTCGAAATGTATTCC 59.413 55.000 22.15 0.00 0.00 3.01
549 550 1.295792 TGCCGGCTCGAAATGTATTC 58.704 50.000 29.70 0.00 0.00 1.75
550 551 1.670811 CTTGCCGGCTCGAAATGTATT 59.329 47.619 29.70 0.00 0.00 1.89
551 552 1.134521 TCTTGCCGGCTCGAAATGTAT 60.135 47.619 29.70 0.00 0.00 2.29
552 553 0.248012 TCTTGCCGGCTCGAAATGTA 59.752 50.000 29.70 0.00 0.00 2.29
553 554 1.003839 TCTTGCCGGCTCGAAATGT 60.004 52.632 29.70 0.00 0.00 2.71
554 555 1.298157 TGTCTTGCCGGCTCGAAATG 61.298 55.000 29.70 9.17 0.00 2.32
555 556 0.392998 ATGTCTTGCCGGCTCGAAAT 60.393 50.000 29.70 20.19 0.00 2.17
556 557 0.605319 AATGTCTTGCCGGCTCGAAA 60.605 50.000 29.70 18.78 0.00 3.46
557 558 0.248012 TAATGTCTTGCCGGCTCGAA 59.752 50.000 29.70 13.13 0.00 3.71
558 559 0.179111 CTAATGTCTTGCCGGCTCGA 60.179 55.000 29.70 20.51 0.00 4.04
559 560 1.766143 GCTAATGTCTTGCCGGCTCG 61.766 60.000 29.70 18.38 0.00 5.03
560 561 1.766143 CGCTAATGTCTTGCCGGCTC 61.766 60.000 29.70 15.44 0.00 4.70
561 562 1.815421 CGCTAATGTCTTGCCGGCT 60.815 57.895 29.70 7.80 0.00 5.52
562 563 2.036764 GACGCTAATGTCTTGCCGGC 62.037 60.000 22.73 22.73 35.95 6.13
563 564 1.752501 CGACGCTAATGTCTTGCCGG 61.753 60.000 0.00 0.00 36.71 6.13
564 565 1.631072 CGACGCTAATGTCTTGCCG 59.369 57.895 0.00 0.00 36.71 5.69
565 566 1.084370 AGCGACGCTAATGTCTTGCC 61.084 55.000 23.15 0.00 36.99 4.52
566 567 0.025513 CAGCGACGCTAATGTCTTGC 59.974 55.000 24.00 0.00 36.40 4.01
567 568 0.647410 CCAGCGACGCTAATGTCTTG 59.353 55.000 24.00 8.29 36.40 3.02
568 569 0.246635 ACCAGCGACGCTAATGTCTT 59.753 50.000 24.00 0.00 36.40 3.01
569 570 0.246635 AACCAGCGACGCTAATGTCT 59.753 50.000 24.00 8.24 36.40 3.41
570 571 1.060698 GAAACCAGCGACGCTAATGTC 59.939 52.381 24.00 14.02 36.40 3.06
599 604 0.918619 CGATTCGGTCGTATGCGTTT 59.081 50.000 2.37 0.00 45.19 3.60
600 605 2.573802 CGATTCGGTCGTATGCGTT 58.426 52.632 2.37 0.00 45.19 4.84
601 606 4.297071 CGATTCGGTCGTATGCGT 57.703 55.556 2.37 0.00 45.19 5.24
640 645 1.600638 GGGAACGGAATTCGGGTCT 59.399 57.895 24.95 7.43 44.45 3.85
645 650 0.802494 CAACTGGGGAACGGAATTCG 59.198 55.000 0.00 0.00 45.88 3.34
691 696 1.268234 GGACATCATAGTGCGCTTTGC 60.268 52.381 9.73 0.00 46.70 3.68
755 761 1.871039 GCTCGGTAGTGCTCACAAAAA 59.129 47.619 2.63 0.00 34.34 1.94
774 780 3.891366 ACTGCATAATATCCTGGTTTGGC 59.109 43.478 0.00 0.00 0.00 4.52
818 825 1.217882 CGATATTCTGTGGCCGTTCC 58.782 55.000 0.00 0.00 0.00 3.62
827 834 1.951130 CAGCGCCGCGATATTCTGT 60.951 57.895 18.91 0.00 0.00 3.41
840 847 2.742372 CACCACCACTACCAGCGC 60.742 66.667 0.00 0.00 0.00 5.92
844 851 2.369532 GTTTACTCCACCACCACTACCA 59.630 50.000 0.00 0.00 0.00 3.25
960 967 0.319555 TTGCGGTTCTGTCTCCTTCG 60.320 55.000 0.00 0.00 0.00 3.79
1012 1019 0.111061 TGGAAATGCTCTGGTGCTGT 59.889 50.000 0.00 0.00 0.00 4.40
1064 1099 2.042843 GGGCGGGAGGAGAAGAGA 60.043 66.667 0.00 0.00 0.00 3.10
1065 1100 3.532155 CGGGCGGGAGGAGAAGAG 61.532 72.222 0.00 0.00 0.00 2.85
1066 1101 4.377760 ACGGGCGGGAGGAGAAGA 62.378 66.667 0.00 0.00 0.00 2.87
1067 1102 4.148825 CACGGGCGGGAGGAGAAG 62.149 72.222 0.00 0.00 0.00 2.85
1104 1139 1.910722 GCTCCTCATGCCTGGAAGA 59.089 57.895 0.00 0.00 34.07 2.87
1314 1371 2.188829 ACACGAACACGAGACGGGA 61.189 57.895 11.82 0.00 32.98 5.14
1315 1372 2.014554 CACACGAACACGAGACGGG 61.015 63.158 0.00 0.00 35.82 5.28
1338 1395 1.992277 GCCTCTCCCTCAGCAGGAA 60.992 63.158 0.00 0.00 43.65 3.36
1342 1399 3.385384 CACGCCTCTCCCTCAGCA 61.385 66.667 0.00 0.00 0.00 4.41
1344 1401 1.943116 CTCACACGCCTCTCCCTCAG 61.943 65.000 0.00 0.00 0.00 3.35
1389 1446 2.543012 GGAGATTCGATGTGCACTCATG 59.457 50.000 19.41 5.53 0.00 3.07
1436 1553 2.432628 GAACCGTGGAGGCGACTG 60.433 66.667 0.00 0.00 46.52 3.51
1576 1752 4.828072 ATTTGACCTCTCTCCCTTACAC 57.172 45.455 0.00 0.00 0.00 2.90
1584 1760 5.344743 TGTGGATGTATTTGACCTCTCTC 57.655 43.478 0.00 0.00 0.00 3.20
1587 1763 6.947733 TCAAATTGTGGATGTATTTGACCTCT 59.052 34.615 0.00 0.00 41.07 3.69
1876 2057 2.571653 AGGGTAGACTTGTGCAGCATTA 59.428 45.455 0.00 0.00 0.00 1.90
1912 2093 5.928264 GCCATCAATAACATATTTTGCCTCC 59.072 40.000 0.00 0.00 0.00 4.30
1930 2111 0.031857 CAGTTTTTGGCACGCCATCA 59.968 50.000 12.39 0.00 46.64 3.07
2058 2244 0.394899 AGGAAAGGCATGCCAGTAGC 60.395 55.000 37.18 20.53 44.14 3.58
2059 2245 1.211457 AGAGGAAAGGCATGCCAGTAG 59.789 52.381 37.18 0.00 38.92 2.57
2161 2985 7.129109 TGTTAAGAAACTGGAGCGATAAAAG 57.871 36.000 0.00 0.00 36.51 2.27
2165 2989 5.642063 CCTTTGTTAAGAAACTGGAGCGATA 59.358 40.000 0.00 0.00 36.51 2.92
2235 3059 5.826601 TGTGTTACTGCACAAAAGATTGA 57.173 34.783 0.00 0.00 45.17 2.57
2258 3082 5.355350 CCTTTCAGTGCGAGAATAAATTCCT 59.645 40.000 0.00 0.00 37.51 3.36
2299 3123 4.457834 AAGTCTGTCACGGAAAGGATAG 57.542 45.455 0.00 0.00 0.00 2.08
2533 3433 7.275920 ACTCAGGTGATGAAATATACTTGACC 58.724 38.462 0.00 0.00 37.52 4.02
2589 3489 0.527565 AAGCTTTGTTATGCCGCCAG 59.472 50.000 0.00 0.00 0.00 4.85
2727 3627 0.817654 CGTCACTGGCCAGATGTAGA 59.182 55.000 39.19 22.67 0.00 2.59
2887 3787 3.877508 AGAAGCCGCCATCACTTATAAAC 59.122 43.478 0.00 0.00 0.00 2.01
3052 3962 7.510675 TCCAGGTTAAGATCTTATTTCAGGT 57.489 36.000 15.82 0.00 0.00 4.00
3112 4022 2.540101 GTGAAACCCATAAGATCTCGCG 59.460 50.000 0.00 0.00 0.00 5.87
3375 4325 8.352942 AGTGATTAAGAAGCAAACTTAAAGGTG 58.647 33.333 11.74 0.00 41.17 4.00
3582 4532 7.070198 ACATCCCTTTGATTATTTGATGCATGA 59.930 33.333 2.46 0.00 33.23 3.07
3823 4775 0.607489 CCCTGCAGAGAAACACTGGG 60.607 60.000 17.39 0.00 36.09 4.45
3970 4922 6.899393 TGGAACTCATGCAAATAAGAACTT 57.101 33.333 0.00 0.00 0.00 2.66
4007 4959 4.323417 GTGTCATCTGAACATTGGTGGTA 58.677 43.478 0.00 0.00 0.00 3.25
4053 5005 2.745821 GTGTACCCCGAATTTCAGGAAC 59.254 50.000 8.97 4.09 0.00 3.62
4163 5118 9.150348 ACTTCCACAGAAAACAACATTAAAAAG 57.850 29.630 0.00 0.00 0.00 2.27
4247 5202 7.621796 ACAAAAGGTAGGTATGAGGAAACTAG 58.378 38.462 0.00 0.00 44.43 2.57
4252 5207 5.570844 GCAGACAAAAGGTAGGTATGAGGAA 60.571 44.000 0.00 0.00 0.00 3.36
4271 5226 3.324993 GCTAGATATCTTGGCTGCAGAC 58.675 50.000 20.43 17.52 0.00 3.51
4339 5294 4.199310 TGAGAACTTGACAAACTTCCCAG 58.801 43.478 0.00 0.00 0.00 4.45
4379 5334 5.178096 TGCCAGACAAATCCTGATTCTTA 57.822 39.130 0.00 0.00 33.65 2.10
4383 5338 3.972133 TGATGCCAGACAAATCCTGATT 58.028 40.909 0.00 0.00 33.65 2.57
4411 5366 1.663445 GCGGAAGTATCACCTCGATCG 60.663 57.143 9.36 9.36 35.39 3.69
4412 5367 1.609555 AGCGGAAGTATCACCTCGATC 59.390 52.381 0.00 0.00 35.39 3.69
4642 5908 2.522836 TGCCGACATTTTGCATGTTT 57.477 40.000 0.00 0.00 31.52 2.83
4654 5920 3.897141 TGTATGTCCTATTTGCCGACA 57.103 42.857 0.00 0.00 40.58 4.35
4797 6064 9.683069 GATTAAAGCTCAAGAAATTTGACTTCA 57.317 29.630 0.00 0.00 0.00 3.02
4813 6091 4.479786 AGGACTCCACTGATTAAAGCTC 57.520 45.455 0.00 0.00 0.00 4.09
5045 6326 2.281091 CATCCCCAATGCCTGGCT 59.719 61.111 21.03 2.27 44.90 4.75
5148 6429 4.463891 AGGCTGGTTTGGTTGATGATAAAG 59.536 41.667 0.00 0.00 0.00 1.85
5193 6474 1.000060 TGCGCATATACCGTTAGTCCC 60.000 52.381 5.66 0.00 0.00 4.46
5282 6563 2.170607 ACATTAAGCGACTGGGCATAGT 59.829 45.455 0.00 0.00 34.64 2.12
5301 6582 3.195610 AGTCAGTGATTAAGCCATCGACA 59.804 43.478 0.00 0.00 0.00 4.35
5360 6641 2.668457 ACACGAATGAAAGATCGCAGAC 59.332 45.455 0.00 0.00 42.51 3.51
5362 6643 3.729526 AACACGAATGAAAGATCGCAG 57.270 42.857 0.00 0.00 42.61 5.18
5466 6792 7.680730 AGAAAAGAGAGTTTCCTATTGCTGTA 58.319 34.615 0.00 0.00 38.10 2.74
5476 6802 6.944234 TCCAAAAGAGAAAAGAGAGTTTCC 57.056 37.500 0.00 0.00 38.10 3.13
5490 6816 9.219603 TCAAATACTGTCACTTATCCAAAAGAG 57.780 33.333 0.00 0.00 0.00 2.85
5710 7037 4.388499 ATTCTTGGGCGCGACGGT 62.388 61.111 12.10 0.00 0.00 4.83
5712 7039 4.520846 GCATTCTTGGGCGCGACG 62.521 66.667 12.10 0.00 0.00 5.12
5808 7135 2.187958 AGAGTAGCACAGGCCAATACA 58.812 47.619 5.01 0.00 42.56 2.29
5812 7139 1.002430 CAGAAGAGTAGCACAGGCCAA 59.998 52.381 5.01 0.00 42.56 4.52
5886 7213 0.887387 TTGCACAAGTCTAACGGCCC 60.887 55.000 0.00 0.00 0.00 5.80
5887 7214 0.517316 CTTGCACAAGTCTAACGGCC 59.483 55.000 2.12 0.00 33.87 6.13
5937 7268 3.595173 GCCTGATATGTGTGTGTGTGTA 58.405 45.455 0.00 0.00 0.00 2.90
5955 7316 0.317479 AGCTACAGAAACGAACGCCT 59.683 50.000 0.00 0.00 0.00 5.52
6021 7382 3.799420 GCTTGCTAGAGTGATAAACCGAG 59.201 47.826 0.00 0.00 0.00 4.63
6056 7418 5.969435 CAGCAATGCAGTACTGTATGAAATG 59.031 40.000 24.68 19.38 36.07 2.32
6072 7434 0.454600 CCATCACCACTCAGCAATGC 59.545 55.000 0.00 0.00 0.00 3.56
6090 7452 2.586648 AAGACAACATCTTCCCACCC 57.413 50.000 0.00 0.00 44.99 4.61
6179 7542 5.592054 TCTAGAAATATGCACACTTCCTCG 58.408 41.667 0.00 0.00 0.00 4.63
6219 7590 3.824443 ACCACACTTATTTAACACTGCCC 59.176 43.478 0.00 0.00 0.00 5.36
6314 7685 3.806667 GGGCTGCCTCCTGCTCAT 61.807 66.667 19.68 0.00 42.00 2.90
6352 7725 3.057596 CACGTGTGGGCAATTCTAATGTT 60.058 43.478 7.58 0.00 0.00 2.71
6401 7774 1.690352 AGTAGTACTTGTTGGGCGTGT 59.310 47.619 0.00 0.00 0.00 4.49
6402 7775 2.288579 TGAGTAGTACTTGTTGGGCGTG 60.289 50.000 0.00 0.00 0.00 5.34
6403 7776 1.965643 TGAGTAGTACTTGTTGGGCGT 59.034 47.619 0.00 0.00 0.00 5.68
6404 7777 2.736144 TGAGTAGTACTTGTTGGGCG 57.264 50.000 0.00 0.00 0.00 6.13
6405 7778 4.434520 GAGATGAGTAGTACTTGTTGGGC 58.565 47.826 0.00 0.00 0.00 5.36
6528 7902 2.708861 TGCCATCCCGGATAACTACATT 59.291 45.455 0.73 0.00 36.56 2.71
6602 7976 6.481976 CGGCAACTACCATAAATTAGACATGA 59.518 38.462 0.00 0.00 0.00 3.07
6679 8053 5.645929 ACACACATGACAACTACTGTTTGAA 59.354 36.000 0.00 0.00 38.84 2.69
6746 8128 3.858812 CACATGGCAATTGTGATTAACCG 59.141 43.478 14.55 0.00 45.83 4.44
6757 8139 4.527816 ACCAGATAAACACACATGGCAATT 59.472 37.500 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.