Multiple sequence alignment - TraesCS7D01G242400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G242400 chr7D 100.000 3106 0 0 1 3106 206994309 206991204 0.000000e+00 5736
1 TraesCS7D01G242400 chr7B 91.289 2537 155 37 612 3103 194098734 194101249 0.000000e+00 3400
2 TraesCS7D01G242400 chr7A 93.006 2345 127 23 782 3103 219755760 219753430 0.000000e+00 3387
3 TraesCS7D01G242400 chr7A 94.074 135 7 1 616 750 219755891 219755758 1.460000e-48 204
4 TraesCS7D01G242400 chr5A 89.835 423 37 5 73 490 699537727 699537306 3.520000e-149 538
5 TraesCS7D01G242400 chr5A 89.125 423 40 5 73 490 699874364 699874785 3.550000e-144 521
6 TraesCS7D01G242400 chr5A 88.967 426 39 6 66 486 195578077 195578499 1.280000e-143 520
7 TraesCS7D01G242400 chr6D 89.762 420 35 7 73 486 10172917 10173334 5.900000e-147 531
8 TraesCS7D01G242400 chr6D 88.453 433 38 9 62 490 435777581 435778005 2.140000e-141 512
9 TraesCS7D01G242400 chr3B 89.461 427 29 10 73 486 463091281 463090858 2.740000e-145 525
10 TraesCS7D01G242400 chr4A 89.070 430 33 11 73 492 600950739 600950314 3.550000e-144 521
11 TraesCS7D01G242400 chr4D 89.286 420 33 8 73 487 4369688 4370100 1.650000e-142 516
12 TraesCS7D01G242400 chr4D 88.941 425 38 9 73 489 441130302 441129879 1.650000e-142 516


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G242400 chr7D 206991204 206994309 3105 True 5736.0 5736 100.000 1 3106 1 chr7D.!!$R1 3105
1 TraesCS7D01G242400 chr7B 194098734 194101249 2515 False 3400.0 3400 91.289 612 3103 1 chr7B.!!$F1 2491
2 TraesCS7D01G242400 chr7A 219753430 219755891 2461 True 1795.5 3387 93.540 616 3103 2 chr7A.!!$R1 2487

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 0.106149 GAGTTTCGGGTGTGTGGAGT 59.894 55.0 0.0 0.0 0.0 3.85 F
47 48 0.106149 AGTTTCGGGTGTGTGGAGTC 59.894 55.0 0.0 0.0 0.0 3.36 F
1540 1570 0.109226 GTGGTCGCTAGGTCTGTGTC 60.109 60.0 0.0 0.0 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1303 1312 0.540365 TTGACGGTCGGTAGGTTCCT 60.540 55.000 3.34 0.0 0.00 3.36 R
1957 2020 0.829990 TACCGCATCCAGATTCTGCA 59.170 50.000 8.23 0.0 35.64 4.41 R
2845 2916 1.385743 GCGTTGCACTGTAGAAGTACG 59.614 52.381 0.00 0.0 40.03 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.436536 CACATGTGCGGTAAATAGAAAATTC 57.563 36.000 13.94 0.00 0.00 2.17
26 27 6.194508 CACATGTGCGGTAAATAGAAAATTCG 59.805 38.462 13.94 0.00 0.00 3.34
27 28 5.224562 TGTGCGGTAAATAGAAAATTCGG 57.775 39.130 0.00 0.00 0.00 4.30
28 29 4.936411 TGTGCGGTAAATAGAAAATTCGGA 59.064 37.500 0.00 0.00 0.00 4.55
29 30 5.064198 TGTGCGGTAAATAGAAAATTCGGAG 59.936 40.000 0.00 0.00 0.00 4.63
30 31 5.064325 GTGCGGTAAATAGAAAATTCGGAGT 59.936 40.000 0.00 0.00 0.00 3.85
31 32 5.644636 TGCGGTAAATAGAAAATTCGGAGTT 59.355 36.000 0.00 0.00 0.00 3.01
32 33 6.149807 TGCGGTAAATAGAAAATTCGGAGTTT 59.850 34.615 0.00 0.00 0.00 2.66
33 34 6.685828 GCGGTAAATAGAAAATTCGGAGTTTC 59.314 38.462 8.58 8.58 39.48 2.78
34 35 6.898189 CGGTAAATAGAAAATTCGGAGTTTCG 59.102 38.462 10.75 0.00 42.85 3.46
35 36 7.184779 GGTAAATAGAAAATTCGGAGTTTCGG 58.815 38.462 10.75 0.00 42.85 4.30
36 37 5.813080 AATAGAAAATTCGGAGTTTCGGG 57.187 39.130 10.75 0.00 42.85 5.14
37 38 3.136009 AGAAAATTCGGAGTTTCGGGT 57.864 42.857 10.75 0.00 42.85 5.28
38 39 2.812011 AGAAAATTCGGAGTTTCGGGTG 59.188 45.455 10.75 0.00 42.85 4.61
39 40 2.265589 AAATTCGGAGTTTCGGGTGT 57.734 45.000 0.00 0.00 0.00 4.16
40 41 1.519408 AATTCGGAGTTTCGGGTGTG 58.481 50.000 0.00 0.00 0.00 3.82
41 42 0.395312 ATTCGGAGTTTCGGGTGTGT 59.605 50.000 0.00 0.00 0.00 3.72
42 43 0.531090 TTCGGAGTTTCGGGTGTGTG 60.531 55.000 0.00 0.00 0.00 3.82
43 44 1.959226 CGGAGTTTCGGGTGTGTGG 60.959 63.158 0.00 0.00 0.00 4.17
44 45 1.448497 GGAGTTTCGGGTGTGTGGA 59.552 57.895 0.00 0.00 0.00 4.02
45 46 0.602905 GGAGTTTCGGGTGTGTGGAG 60.603 60.000 0.00 0.00 0.00 3.86
46 47 0.106149 GAGTTTCGGGTGTGTGGAGT 59.894 55.000 0.00 0.00 0.00 3.85
47 48 0.106149 AGTTTCGGGTGTGTGGAGTC 59.894 55.000 0.00 0.00 0.00 3.36
48 49 1.068417 TTTCGGGTGTGTGGAGTCG 59.932 57.895 0.00 0.00 0.00 4.18
49 50 2.981977 TTTCGGGTGTGTGGAGTCGC 62.982 60.000 0.00 0.00 0.00 5.19
50 51 4.293648 CGGGTGTGTGGAGTCGCA 62.294 66.667 0.00 0.00 0.00 5.10
51 52 2.357517 GGGTGTGTGGAGTCGCAG 60.358 66.667 0.00 0.00 33.62 5.18
52 53 2.357517 GGTGTGTGGAGTCGCAGG 60.358 66.667 0.00 0.00 33.62 4.85
53 54 2.421739 GTGTGTGGAGTCGCAGGT 59.578 61.111 0.00 0.00 33.62 4.00
54 55 1.664965 GTGTGTGGAGTCGCAGGTC 60.665 63.158 0.00 0.00 33.62 3.85
55 56 1.832608 TGTGTGGAGTCGCAGGTCT 60.833 57.895 0.00 0.00 33.62 3.85
56 57 1.367840 GTGTGGAGTCGCAGGTCTT 59.632 57.895 0.00 0.00 33.62 3.01
57 58 0.946221 GTGTGGAGTCGCAGGTCTTG 60.946 60.000 0.00 0.00 33.62 3.02
58 59 1.374758 GTGGAGTCGCAGGTCTTGG 60.375 63.158 0.00 0.00 0.00 3.61
59 60 2.435059 GGAGTCGCAGGTCTTGGC 60.435 66.667 0.00 0.00 0.00 4.52
60 61 2.435059 GAGTCGCAGGTCTTGGCC 60.435 66.667 0.00 0.00 0.00 5.36
61 62 4.379243 AGTCGCAGGTCTTGGCCG 62.379 66.667 0.00 0.00 0.00 6.13
62 63 4.681978 GTCGCAGGTCTTGGCCGT 62.682 66.667 0.00 0.00 0.00 5.68
63 64 2.992689 TCGCAGGTCTTGGCCGTA 60.993 61.111 0.00 0.00 0.00 4.02
64 65 2.509336 CGCAGGTCTTGGCCGTAG 60.509 66.667 0.00 0.00 0.00 3.51
65 66 2.820037 GCAGGTCTTGGCCGTAGC 60.820 66.667 0.00 0.00 38.76 3.58
66 67 2.662596 CAGGTCTTGGCCGTAGCA 59.337 61.111 0.00 0.00 42.56 3.49
67 68 1.221840 CAGGTCTTGGCCGTAGCAT 59.778 57.895 0.00 0.00 42.56 3.79
68 69 0.464036 CAGGTCTTGGCCGTAGCATA 59.536 55.000 0.00 0.00 42.56 3.14
69 70 0.753262 AGGTCTTGGCCGTAGCATAG 59.247 55.000 0.00 0.00 42.56 2.23
70 71 0.464452 GGTCTTGGCCGTAGCATAGT 59.536 55.000 0.00 0.00 42.56 2.12
71 72 1.684983 GGTCTTGGCCGTAGCATAGTA 59.315 52.381 0.00 0.00 42.56 1.82
72 73 2.288273 GGTCTTGGCCGTAGCATAGTAG 60.288 54.545 0.00 0.00 42.56 2.57
73 74 1.961394 TCTTGGCCGTAGCATAGTAGG 59.039 52.381 0.00 0.00 42.56 3.18
74 75 1.000955 CTTGGCCGTAGCATAGTAGGG 59.999 57.143 0.00 0.00 42.56 3.53
75 76 0.186630 TGGCCGTAGCATAGTAGGGA 59.813 55.000 0.00 0.00 42.56 4.20
76 77 1.335145 GGCCGTAGCATAGTAGGGAA 58.665 55.000 0.00 0.00 42.56 3.97
77 78 1.690352 GGCCGTAGCATAGTAGGGAAA 59.310 52.381 0.00 0.00 42.56 3.13
78 79 2.302157 GGCCGTAGCATAGTAGGGAAAT 59.698 50.000 0.00 0.00 42.56 2.17
79 80 3.512724 GGCCGTAGCATAGTAGGGAAATA 59.487 47.826 0.00 0.00 42.56 1.40
80 81 4.161754 GGCCGTAGCATAGTAGGGAAATAT 59.838 45.833 0.00 0.00 42.56 1.28
81 82 5.349809 GCCGTAGCATAGTAGGGAAATATC 58.650 45.833 0.00 0.00 39.53 1.63
82 83 5.127356 GCCGTAGCATAGTAGGGAAATATCT 59.873 44.000 0.00 0.00 39.53 1.98
83 84 6.565234 CCGTAGCATAGTAGGGAAATATCTG 58.435 44.000 0.00 0.00 30.69 2.90
84 85 6.405953 CCGTAGCATAGTAGGGAAATATCTGG 60.406 46.154 0.00 0.00 30.69 3.86
85 86 6.153000 CGTAGCATAGTAGGGAAATATCTGGT 59.847 42.308 0.00 0.00 0.00 4.00
86 87 6.365970 AGCATAGTAGGGAAATATCTGGTG 57.634 41.667 0.00 0.00 0.00 4.17
87 88 4.938226 GCATAGTAGGGAAATATCTGGTGC 59.062 45.833 0.00 0.00 0.00 5.01
88 89 5.513094 GCATAGTAGGGAAATATCTGGTGCA 60.513 44.000 0.00 0.00 0.00 4.57
89 90 4.423625 AGTAGGGAAATATCTGGTGCAC 57.576 45.455 8.80 8.80 0.00 4.57
90 91 2.736670 AGGGAAATATCTGGTGCACC 57.263 50.000 29.67 29.67 0.00 5.01
91 92 1.134098 AGGGAAATATCTGGTGCACCG 60.134 52.381 30.07 23.48 39.43 4.94
92 93 1.308998 GGAAATATCTGGTGCACCGG 58.691 55.000 35.06 35.06 43.86 5.28
97 98 3.241530 TCTGGTGCACCGGAGCTT 61.242 61.111 38.27 0.00 46.04 3.74
98 99 3.052082 CTGGTGCACCGGAGCTTG 61.052 66.667 37.13 13.64 45.36 4.01
99 100 3.832237 CTGGTGCACCGGAGCTTGT 62.832 63.158 37.13 0.00 45.36 3.16
100 101 2.345991 GGTGCACCGGAGCTTGTA 59.654 61.111 22.49 1.01 34.99 2.41
101 102 1.741770 GGTGCACCGGAGCTTGTAG 60.742 63.158 22.49 0.00 34.99 2.74
102 103 1.004918 GTGCACCGGAGCTTGTAGT 60.005 57.895 24.52 0.00 34.99 2.73
103 104 1.005037 TGCACCGGAGCTTGTAGTG 60.005 57.895 24.52 1.73 34.99 2.74
104 105 2.391389 GCACCGGAGCTTGTAGTGC 61.391 63.158 17.33 13.84 45.99 4.40
105 106 1.293498 CACCGGAGCTTGTAGTGCT 59.707 57.895 9.46 0.00 44.24 4.40
106 107 0.530744 CACCGGAGCTTGTAGTGCTA 59.469 55.000 9.46 0.00 41.30 3.49
107 108 0.531200 ACCGGAGCTTGTAGTGCTAC 59.469 55.000 9.46 2.60 41.30 3.58
108 109 0.179108 CCGGAGCTTGTAGTGCTACC 60.179 60.000 0.00 0.00 41.30 3.18
109 110 0.525668 CGGAGCTTGTAGTGCTACCG 60.526 60.000 6.87 0.00 41.30 4.02
110 111 0.179108 GGAGCTTGTAGTGCTACCGG 60.179 60.000 0.00 0.00 41.30 5.28
111 112 0.531200 GAGCTTGTAGTGCTACCGGT 59.469 55.000 13.98 13.98 41.30 5.28
112 113 0.531200 AGCTTGTAGTGCTACCGGTC 59.469 55.000 12.40 0.00 39.21 4.79
113 114 0.459759 GCTTGTAGTGCTACCGGTCC 60.460 60.000 12.40 3.85 35.26 4.46
114 115 0.892755 CTTGTAGTGCTACCGGTCCA 59.107 55.000 12.40 7.15 35.26 4.02
115 116 0.604578 TTGTAGTGCTACCGGTCCAC 59.395 55.000 23.61 23.61 35.26 4.02
116 117 1.252904 TGTAGTGCTACCGGTCCACC 61.253 60.000 25.97 16.45 35.26 4.61
129 130 1.940613 GGTCCACCGAACTCATATTGC 59.059 52.381 0.00 0.00 0.00 3.56
130 131 1.593006 GTCCACCGAACTCATATTGCG 59.407 52.381 0.00 0.00 0.00 4.85
131 132 0.304705 CCACCGAACTCATATTGCGC 59.695 55.000 0.00 0.00 0.00 6.09
132 133 1.290203 CACCGAACTCATATTGCGCT 58.710 50.000 9.73 0.00 0.00 5.92
133 134 1.665679 CACCGAACTCATATTGCGCTT 59.334 47.619 9.73 0.00 0.00 4.68
134 135 2.095853 CACCGAACTCATATTGCGCTTT 59.904 45.455 9.73 0.00 0.00 3.51
135 136 3.308595 CACCGAACTCATATTGCGCTTTA 59.691 43.478 9.73 0.00 0.00 1.85
136 137 3.936453 ACCGAACTCATATTGCGCTTTAA 59.064 39.130 9.73 0.00 0.00 1.52
137 138 4.393680 ACCGAACTCATATTGCGCTTTAAA 59.606 37.500 9.73 0.00 0.00 1.52
138 139 5.106475 ACCGAACTCATATTGCGCTTTAAAA 60.106 36.000 9.73 0.00 0.00 1.52
139 140 5.971202 CCGAACTCATATTGCGCTTTAAAAT 59.029 36.000 9.73 1.49 0.00 1.82
140 141 6.472163 CCGAACTCATATTGCGCTTTAAAATT 59.528 34.615 9.73 0.00 0.00 1.82
141 142 7.322260 CGAACTCATATTGCGCTTTAAAATTG 58.678 34.615 9.73 1.74 0.00 2.32
142 143 7.008266 CGAACTCATATTGCGCTTTAAAATTGT 59.992 33.333 9.73 0.00 0.00 2.71
143 144 8.532977 AACTCATATTGCGCTTTAAAATTGTT 57.467 26.923 9.73 1.07 0.00 2.83
144 145 8.173321 ACTCATATTGCGCTTTAAAATTGTTC 57.827 30.769 9.73 0.00 0.00 3.18
145 146 7.812191 ACTCATATTGCGCTTTAAAATTGTTCA 59.188 29.630 9.73 0.00 0.00 3.18
146 147 8.526218 TCATATTGCGCTTTAAAATTGTTCAA 57.474 26.923 9.73 0.00 0.00 2.69
147 148 8.982685 TCATATTGCGCTTTAAAATTGTTCAAA 58.017 25.926 9.73 0.00 0.00 2.69
148 149 9.591404 CATATTGCGCTTTAAAATTGTTCAAAA 57.409 25.926 9.73 0.00 0.00 2.44
183 184 7.840342 AAAAATTTAGCACATTCACACAACA 57.160 28.000 0.00 0.00 0.00 3.33
184 185 8.436046 AAAAATTTAGCACATTCACACAACAT 57.564 26.923 0.00 0.00 0.00 2.71
185 186 7.642071 AAATTTAGCACATTCACACAACATC 57.358 32.000 0.00 0.00 0.00 3.06
186 187 5.764487 TTTAGCACATTCACACAACATCA 57.236 34.783 0.00 0.00 0.00 3.07
187 188 5.764487 TTAGCACATTCACACAACATCAA 57.236 34.783 0.00 0.00 0.00 2.57
188 189 4.859304 AGCACATTCACACAACATCAAT 57.141 36.364 0.00 0.00 0.00 2.57
189 190 4.552355 AGCACATTCACACAACATCAATG 58.448 39.130 0.00 0.00 0.00 2.82
190 191 4.038282 AGCACATTCACACAACATCAATGT 59.962 37.500 0.00 0.00 44.20 2.71
191 192 5.241285 AGCACATTCACACAACATCAATGTA 59.759 36.000 0.00 0.00 40.80 2.29
192 193 5.570206 GCACATTCACACAACATCAATGTAG 59.430 40.000 0.00 0.00 40.80 2.74
193 194 6.088173 CACATTCACACAACATCAATGTAGG 58.912 40.000 0.00 0.00 40.80 3.18
194 195 5.769662 ACATTCACACAACATCAATGTAGGT 59.230 36.000 0.00 0.00 40.80 3.08
195 196 6.265196 ACATTCACACAACATCAATGTAGGTT 59.735 34.615 0.00 0.00 40.80 3.50
196 197 5.687770 TCACACAACATCAATGTAGGTTG 57.312 39.130 10.85 10.85 44.57 3.77
201 202 5.687770 CAACATCAATGTAGGTTGTCACA 57.312 39.130 0.00 0.00 40.80 3.58
202 203 6.070897 CAACATCAATGTAGGTTGTCACAA 57.929 37.500 0.00 0.00 40.80 3.33
203 204 6.502652 CAACATCAATGTAGGTTGTCACAAA 58.497 36.000 0.00 0.00 40.80 2.83
204 205 6.707440 ACATCAATGTAGGTTGTCACAAAA 57.293 33.333 0.00 0.00 39.68 2.44
205 206 7.106439 ACATCAATGTAGGTTGTCACAAAAA 57.894 32.000 0.00 0.00 39.68 1.94
206 207 7.725251 ACATCAATGTAGGTTGTCACAAAAAT 58.275 30.769 0.00 0.00 39.68 1.82
207 208 8.203485 ACATCAATGTAGGTTGTCACAAAAATT 58.797 29.630 0.00 0.00 39.68 1.82
208 209 8.702438 CATCAATGTAGGTTGTCACAAAAATTC 58.298 33.333 0.00 0.00 0.00 2.17
209 210 7.776107 TCAATGTAGGTTGTCACAAAAATTCA 58.224 30.769 0.00 0.00 0.00 2.57
210 211 8.253810 TCAATGTAGGTTGTCACAAAAATTCAA 58.746 29.630 0.00 0.00 0.00 2.69
211 212 8.542132 CAATGTAGGTTGTCACAAAAATTCAAG 58.458 33.333 0.00 0.00 0.00 3.02
212 213 7.164230 TGTAGGTTGTCACAAAAATTCAAGT 57.836 32.000 0.00 0.00 0.00 3.16
213 214 7.254852 TGTAGGTTGTCACAAAAATTCAAGTC 58.745 34.615 0.00 0.00 0.00 3.01
214 215 6.279513 AGGTTGTCACAAAAATTCAAGTCA 57.720 33.333 0.00 0.00 0.00 3.41
215 216 6.696411 AGGTTGTCACAAAAATTCAAGTCAA 58.304 32.000 0.00 0.00 0.00 3.18
216 217 7.158021 AGGTTGTCACAAAAATTCAAGTCAAA 58.842 30.769 0.00 0.00 0.00 2.69
217 218 7.659390 AGGTTGTCACAAAAATTCAAGTCAAAA 59.341 29.630 0.00 0.00 0.00 2.44
218 219 8.450180 GGTTGTCACAAAAATTCAAGTCAAAAT 58.550 29.630 0.00 0.00 0.00 1.82
219 220 9.824534 GTTGTCACAAAAATTCAAGTCAAAATT 57.175 25.926 0.00 0.00 0.00 1.82
221 222 9.823098 TGTCACAAAAATTCAAGTCAAAATTTG 57.177 25.926 0.00 0.00 35.74 2.32
281 282 9.832445 AGTGAATAGTATGTAACATAACTTGGG 57.168 33.333 0.00 0.00 0.00 4.12
282 283 8.557029 GTGAATAGTATGTAACATAACTTGGGC 58.443 37.037 0.00 0.00 0.00 5.36
283 284 8.491134 TGAATAGTATGTAACATAACTTGGGCT 58.509 33.333 0.00 0.00 0.00 5.19
284 285 9.338622 GAATAGTATGTAACATAACTTGGGCTT 57.661 33.333 0.00 0.00 0.00 4.35
285 286 9.695155 AATAGTATGTAACATAACTTGGGCTTT 57.305 29.630 0.00 0.00 0.00 3.51
287 288 8.732746 AGTATGTAACATAACTTGGGCTTTAG 57.267 34.615 0.00 0.00 0.00 1.85
288 289 8.545472 AGTATGTAACATAACTTGGGCTTTAGA 58.455 33.333 0.00 0.00 0.00 2.10
289 290 9.338622 GTATGTAACATAACTTGGGCTTTAGAT 57.661 33.333 0.00 0.00 0.00 1.98
290 291 8.823220 ATGTAACATAACTTGGGCTTTAGATT 57.177 30.769 0.00 0.00 0.00 2.40
291 292 8.644374 TGTAACATAACTTGGGCTTTAGATTT 57.356 30.769 0.00 0.00 0.00 2.17
292 293 8.519526 TGTAACATAACTTGGGCTTTAGATTTG 58.480 33.333 0.00 0.00 0.00 2.32
293 294 6.530019 ACATAACTTGGGCTTTAGATTTGG 57.470 37.500 0.00 0.00 0.00 3.28
294 295 3.961480 AACTTGGGCTTTAGATTTGGC 57.039 42.857 0.00 0.00 0.00 4.52
295 296 2.179427 ACTTGGGCTTTAGATTTGGCC 58.821 47.619 0.00 0.00 45.24 5.36
302 303 5.139435 GGCTTTAGATTTGGCCCATTATC 57.861 43.478 0.00 0.00 38.77 1.75
303 304 4.588528 GGCTTTAGATTTGGCCCATTATCA 59.411 41.667 0.00 0.00 38.77 2.15
304 305 5.509670 GGCTTTAGATTTGGCCCATTATCAC 60.510 44.000 0.00 0.00 38.77 3.06
305 306 5.068987 GCTTTAGATTTGGCCCATTATCACA 59.931 40.000 0.00 0.00 0.00 3.58
306 307 6.463995 TTTAGATTTGGCCCATTATCACAC 57.536 37.500 0.00 0.00 0.00 3.82
307 308 3.979911 AGATTTGGCCCATTATCACACA 58.020 40.909 0.00 0.00 0.00 3.72
308 309 3.956199 AGATTTGGCCCATTATCACACAG 59.044 43.478 0.00 0.00 0.00 3.66
309 310 3.448093 TTTGGCCCATTATCACACAGA 57.552 42.857 0.00 0.00 0.00 3.41
310 311 3.668141 TTGGCCCATTATCACACAGAT 57.332 42.857 0.00 0.00 40.86 2.90
311 312 2.934887 TGGCCCATTATCACACAGATG 58.065 47.619 0.00 0.00 37.57 2.90
312 313 2.241941 TGGCCCATTATCACACAGATGT 59.758 45.455 0.00 0.00 40.80 3.06
313 314 2.880890 GGCCCATTATCACACAGATGTC 59.119 50.000 0.00 0.00 36.72 3.06
314 315 3.544684 GCCCATTATCACACAGATGTCA 58.455 45.455 0.00 0.00 36.72 3.58
315 316 3.947196 GCCCATTATCACACAGATGTCAA 59.053 43.478 0.00 0.00 36.72 3.18
316 317 4.398988 GCCCATTATCACACAGATGTCAAA 59.601 41.667 0.00 0.00 36.72 2.69
317 318 5.677091 GCCCATTATCACACAGATGTCAAAC 60.677 44.000 0.00 0.00 36.72 2.93
318 319 5.649395 CCCATTATCACACAGATGTCAAACT 59.351 40.000 0.00 0.00 36.72 2.66
319 320 6.151648 CCCATTATCACACAGATGTCAAACTT 59.848 38.462 0.00 0.00 36.72 2.66
320 321 7.025365 CCATTATCACACAGATGTCAAACTTG 58.975 38.462 0.00 0.00 36.72 3.16
321 322 7.308770 CCATTATCACACAGATGTCAAACTTGT 60.309 37.037 0.00 0.00 36.72 3.16
322 323 5.679734 ATCACACAGATGTCAAACTTGTC 57.320 39.130 0.00 0.00 36.72 3.18
323 324 4.512484 TCACACAGATGTCAAACTTGTCA 58.488 39.130 0.00 0.00 36.72 3.58
324 325 5.125356 TCACACAGATGTCAAACTTGTCAT 58.875 37.500 2.44 2.44 39.12 3.06
325 326 5.589855 TCACACAGATGTCAAACTTGTCATT 59.410 36.000 4.13 0.00 37.13 2.57
326 327 6.095300 TCACACAGATGTCAAACTTGTCATTT 59.905 34.615 4.13 0.00 37.13 2.32
327 328 6.753279 CACACAGATGTCAAACTTGTCATTTT 59.247 34.615 4.13 0.00 37.13 1.82
328 329 7.276218 CACACAGATGTCAAACTTGTCATTTTT 59.724 33.333 4.13 0.00 37.13 1.94
329 330 7.276218 ACACAGATGTCAAACTTGTCATTTTTG 59.724 33.333 4.13 4.88 37.13 2.44
330 331 7.276218 CACAGATGTCAAACTTGTCATTTTTGT 59.724 33.333 4.13 6.61 37.13 2.83
331 332 8.465999 ACAGATGTCAAACTTGTCATTTTTGTA 58.534 29.630 4.13 0.66 37.13 2.41
332 333 9.467258 CAGATGTCAAACTTGTCATTTTTGTAT 57.533 29.630 4.13 4.12 37.13 2.29
333 334 9.683069 AGATGTCAAACTTGTCATTTTTGTATC 57.317 29.630 4.13 10.06 37.13 2.24
334 335 9.683069 GATGTCAAACTTGTCATTTTTGTATCT 57.317 29.630 4.13 0.00 37.13 1.98
373 374 9.521503 TCAATTTTGATACGAAATTTTGTGACA 57.478 25.926 19.51 15.44 35.21 3.58
376 377 9.689976 ATTTTGATACGAAATTTTGTGACATCA 57.310 25.926 19.51 16.71 0.00 3.07
377 378 9.689976 TTTTGATACGAAATTTTGTGACATCAT 57.310 25.926 19.51 5.31 0.00 2.45
379 380 9.767684 TTGATACGAAATTTTGTGACATCATAC 57.232 29.630 19.51 1.97 0.00 2.39
380 381 8.940952 TGATACGAAATTTTGTGACATCATACA 58.059 29.630 19.51 0.00 0.00 2.29
381 382 9.935682 GATACGAAATTTTGTGACATCATACAT 57.064 29.630 19.51 2.64 0.00 2.29
383 384 8.451687 ACGAAATTTTGTGACATCATACATTG 57.548 30.769 10.38 0.00 0.00 2.82
384 385 8.296000 ACGAAATTTTGTGACATCATACATTGA 58.704 29.630 10.38 0.00 39.12 2.57
385 386 9.292846 CGAAATTTTGTGACATCATACATTGAT 57.707 29.630 0.00 0.00 46.27 2.57
399 400 9.791820 ATCATACATTGATGTTGTGTTAATGTG 57.208 29.630 10.22 0.00 43.60 3.21
400 401 7.754475 TCATACATTGATGTTGTGTTAATGTGC 59.246 33.333 10.22 0.00 40.83 4.57
401 402 6.088016 ACATTGATGTTGTGTTAATGTGCT 57.912 33.333 0.00 0.00 39.65 4.40
402 403 7.213216 ACATTGATGTTGTGTTAATGTGCTA 57.787 32.000 0.00 0.00 39.65 3.49
403 404 7.307694 ACATTGATGTTGTGTTAATGTGCTAG 58.692 34.615 0.00 0.00 39.65 3.42
404 405 7.174772 ACATTGATGTTGTGTTAATGTGCTAGA 59.825 33.333 0.00 0.00 39.65 2.43
405 406 6.480524 TGATGTTGTGTTAATGTGCTAGAC 57.519 37.500 0.00 0.00 0.00 2.59
406 407 6.230472 TGATGTTGTGTTAATGTGCTAGACT 58.770 36.000 0.00 0.00 0.00 3.24
407 408 6.710295 TGATGTTGTGTTAATGTGCTAGACTT 59.290 34.615 0.00 0.00 0.00 3.01
408 409 6.935741 TGTTGTGTTAATGTGCTAGACTTT 57.064 33.333 0.00 0.00 0.00 2.66
409 410 7.328277 TGTTGTGTTAATGTGCTAGACTTTT 57.672 32.000 0.00 0.00 0.00 2.27
410 411 7.767261 TGTTGTGTTAATGTGCTAGACTTTTT 58.233 30.769 0.00 0.00 0.00 1.94
441 442 8.472683 TTTTTAAAAATGTTCTATGGCATCCG 57.527 30.769 9.31 0.00 0.00 4.18
442 443 6.767524 TTAAAAATGTTCTATGGCATCCGT 57.232 33.333 1.65 0.00 0.00 4.69
443 444 4.637483 AAAATGTTCTATGGCATCCGTG 57.363 40.909 1.65 0.00 0.00 4.94
459 460 3.551407 TGCACCGGTAGCACCACA 61.551 61.111 22.47 5.12 38.47 4.17
460 461 2.281208 GCACCGGTAGCACCACAA 60.281 61.111 19.85 0.00 38.47 3.33
461 462 2.325082 GCACCGGTAGCACCACAAG 61.325 63.158 19.85 0.99 38.47 3.16
462 463 1.070786 CACCGGTAGCACCACAAGT 59.929 57.895 6.87 0.00 38.47 3.16
470 471 2.633657 CACCACAAGTGCGAGTGC 59.366 61.111 0.00 0.00 40.28 4.40
480 481 4.910956 GCGAGTGCACAGGATACA 57.089 55.556 21.04 0.00 42.15 2.29
481 482 3.369381 GCGAGTGCACAGGATACAT 57.631 52.632 21.04 0.00 42.15 2.29
482 483 1.656652 GCGAGTGCACAGGATACATT 58.343 50.000 21.04 0.00 42.15 2.71
483 484 1.594862 GCGAGTGCACAGGATACATTC 59.405 52.381 21.04 3.13 42.15 2.67
484 485 2.205074 CGAGTGCACAGGATACATTCC 58.795 52.381 21.04 0.00 45.85 3.01
485 486 2.565841 GAGTGCACAGGATACATTCCC 58.434 52.381 21.04 0.00 46.81 3.97
486 487 1.134401 AGTGCACAGGATACATTCCCG 60.134 52.381 21.04 0.00 46.81 5.14
487 488 0.908910 TGCACAGGATACATTCCCGT 59.091 50.000 0.00 0.00 46.81 5.28
488 489 2.112190 TGCACAGGATACATTCCCGTA 58.888 47.619 0.00 0.00 46.81 4.02
489 490 2.102420 TGCACAGGATACATTCCCGTAG 59.898 50.000 0.00 0.00 46.81 3.51
490 491 2.755650 CACAGGATACATTCCCGTAGC 58.244 52.381 0.00 0.00 46.81 3.58
491 492 2.102420 CACAGGATACATTCCCGTAGCA 59.898 50.000 0.00 0.00 46.81 3.49
492 493 2.972713 ACAGGATACATTCCCGTAGCAT 59.027 45.455 0.00 0.00 46.81 3.79
493 494 4.021456 CACAGGATACATTCCCGTAGCATA 60.021 45.833 0.00 0.00 46.81 3.14
494 495 4.220821 ACAGGATACATTCCCGTAGCATAG 59.779 45.833 0.00 0.00 46.81 2.23
495 496 4.220821 CAGGATACATTCCCGTAGCATAGT 59.779 45.833 0.00 0.00 46.81 2.12
496 497 5.417894 CAGGATACATTCCCGTAGCATAGTA 59.582 44.000 0.00 0.00 46.81 1.82
497 498 5.652891 AGGATACATTCCCGTAGCATAGTAG 59.347 44.000 0.00 0.00 46.81 2.57
498 499 5.418209 GGATACATTCCCGTAGCATAGTAGT 59.582 44.000 0.00 0.00 38.75 2.73
499 500 6.600822 GGATACATTCCCGTAGCATAGTAGTA 59.399 42.308 0.00 0.00 38.75 1.82
500 501 7.121759 GGATACATTCCCGTAGCATAGTAGTAA 59.878 40.741 0.00 0.00 38.75 2.24
501 502 6.912951 ACATTCCCGTAGCATAGTAGTAAT 57.087 37.500 0.00 0.00 0.00 1.89
502 503 7.299246 ACATTCCCGTAGCATAGTAGTAATT 57.701 36.000 0.00 0.00 0.00 1.40
503 504 7.376615 ACATTCCCGTAGCATAGTAGTAATTC 58.623 38.462 0.00 0.00 0.00 2.17
504 505 5.972107 TCCCGTAGCATAGTAGTAATTCC 57.028 43.478 0.00 0.00 0.00 3.01
505 506 4.456911 TCCCGTAGCATAGTAGTAATTCCG 59.543 45.833 0.00 0.00 0.00 4.30
506 507 4.217118 CCCGTAGCATAGTAGTAATTCCGT 59.783 45.833 0.00 0.00 0.00 4.69
507 508 5.152097 CCGTAGCATAGTAGTAATTCCGTG 58.848 45.833 0.00 0.00 0.00 4.94
508 509 4.615961 CGTAGCATAGTAGTAATTCCGTGC 59.384 45.833 0.00 0.00 0.00 5.34
509 510 4.665833 AGCATAGTAGTAATTCCGTGCA 57.334 40.909 0.00 0.00 34.01 4.57
510 511 5.215252 AGCATAGTAGTAATTCCGTGCAT 57.785 39.130 0.00 0.00 34.01 3.96
511 512 5.611374 AGCATAGTAGTAATTCCGTGCATT 58.389 37.500 0.00 0.00 34.01 3.56
512 513 5.696724 AGCATAGTAGTAATTCCGTGCATTC 59.303 40.000 0.00 0.00 34.01 2.67
513 514 5.388475 GCATAGTAGTAATTCCGTGCATTCG 60.388 44.000 0.00 0.00 0.00 3.34
514 515 4.380841 AGTAGTAATTCCGTGCATTCGA 57.619 40.909 0.00 0.00 0.00 3.71
515 516 4.945246 AGTAGTAATTCCGTGCATTCGAT 58.055 39.130 0.00 0.00 0.00 3.59
516 517 5.357257 AGTAGTAATTCCGTGCATTCGATT 58.643 37.500 0.00 0.00 0.00 3.34
517 518 5.815740 AGTAGTAATTCCGTGCATTCGATTT 59.184 36.000 0.00 0.00 0.00 2.17
518 519 6.982141 AGTAGTAATTCCGTGCATTCGATTTA 59.018 34.615 0.00 0.00 0.00 1.40
519 520 6.861065 AGTAATTCCGTGCATTCGATTTAT 57.139 33.333 0.00 0.00 0.00 1.40
520 521 7.259290 AGTAATTCCGTGCATTCGATTTATT 57.741 32.000 0.00 0.00 0.00 1.40
521 522 7.352739 AGTAATTCCGTGCATTCGATTTATTC 58.647 34.615 0.00 0.00 0.00 1.75
537 538 7.444245 CGATTTATTCGGTTTTCATTGTTTGG 58.556 34.615 0.00 0.00 44.28 3.28
538 539 7.115663 CGATTTATTCGGTTTTCATTGTTTGGT 59.884 33.333 0.00 0.00 44.28 3.67
539 540 8.669946 ATTTATTCGGTTTTCATTGTTTGGTT 57.330 26.923 0.00 0.00 0.00 3.67
540 541 8.494016 TTTATTCGGTTTTCATTGTTTGGTTT 57.506 26.923 0.00 0.00 0.00 3.27
541 542 9.595823 TTTATTCGGTTTTCATTGTTTGGTTTA 57.404 25.926 0.00 0.00 0.00 2.01
542 543 9.765795 TTATTCGGTTTTCATTGTTTGGTTTAT 57.234 25.926 0.00 0.00 0.00 1.40
544 545 8.576936 TTCGGTTTTCATTGTTTGGTTTATAC 57.423 30.769 0.00 0.00 0.00 1.47
545 546 7.942990 TCGGTTTTCATTGTTTGGTTTATACT 58.057 30.769 0.00 0.00 0.00 2.12
546 547 8.414778 TCGGTTTTCATTGTTTGGTTTATACTT 58.585 29.630 0.00 0.00 0.00 2.24
547 548 9.036671 CGGTTTTCATTGTTTGGTTTATACTTT 57.963 29.630 0.00 0.00 0.00 2.66
678 679 0.734889 GCCCGGTGAATGTGAGAATG 59.265 55.000 0.00 0.00 0.00 2.67
690 691 0.324614 TGAGAATGCTTGGCTTCCGA 59.675 50.000 0.00 0.00 0.00 4.55
709 710 5.603596 TCCGACTTGTCAGTTTTAAGCTAA 58.396 37.500 1.59 0.00 31.22 3.09
811 812 1.691196 TGGACCTCAAGCCAAGTTTG 58.309 50.000 0.00 0.00 0.00 2.93
840 842 1.133513 TCCTTCCTTGCTTTCCTTGCA 60.134 47.619 0.00 0.00 38.80 4.08
844 846 1.043022 CCTTGCTTTCCTTGCAACCT 58.957 50.000 0.00 0.00 44.24 3.50
851 853 3.645884 CTTTCCTTGCAACCTGTTCATG 58.354 45.455 0.00 0.00 0.00 3.07
954 957 1.141053 ACCCCAGCCTCATAAATCGTC 59.859 52.381 0.00 0.00 0.00 4.20
1030 1033 1.407989 CCCTGTCATGCCTTCTTCCTC 60.408 57.143 0.00 0.00 0.00 3.71
1031 1034 1.407989 CCTGTCATGCCTTCTTCCTCC 60.408 57.143 0.00 0.00 0.00 4.30
1032 1035 1.558756 CTGTCATGCCTTCTTCCTCCT 59.441 52.381 0.00 0.00 0.00 3.69
1301 1310 2.607187 CGACGAGTGCCAGTATTTCTT 58.393 47.619 0.00 0.00 0.00 2.52
1302 1311 2.345641 CGACGAGTGCCAGTATTTCTTG 59.654 50.000 0.00 0.00 0.00 3.02
1303 1312 3.585862 GACGAGTGCCAGTATTTCTTGA 58.414 45.455 0.00 0.00 0.00 3.02
1305 1314 2.932614 CGAGTGCCAGTATTTCTTGAGG 59.067 50.000 0.00 0.00 0.00 3.86
1309 1318 3.440522 GTGCCAGTATTTCTTGAGGAACC 59.559 47.826 0.00 0.00 33.13 3.62
1311 1320 4.534500 TGCCAGTATTTCTTGAGGAACCTA 59.466 41.667 0.00 0.00 33.13 3.08
1315 1324 5.021458 AGTATTTCTTGAGGAACCTACCGA 58.979 41.667 0.00 0.00 33.13 4.69
1322 1331 0.540365 AGGAACCTACCGACCGTCAA 60.540 55.000 0.00 0.00 34.73 3.18
1323 1332 0.533951 GGAACCTACCGACCGTCAAT 59.466 55.000 0.00 0.00 0.00 2.57
1329 1338 2.610976 CCTACCGACCGTCAATGTTTCA 60.611 50.000 0.00 0.00 0.00 2.69
1400 1424 4.609691 TGTTCTTTTGTTCGTTCTGGTC 57.390 40.909 0.00 0.00 0.00 4.02
1435 1465 0.937304 GCTTTGACAGAGCGTGTTCA 59.063 50.000 1.73 0.00 40.56 3.18
1446 1476 3.741344 AGAGCGTGTTCATGTTTCTACAC 59.259 43.478 0.00 0.00 37.03 2.90
1540 1570 0.109226 GTGGTCGCTAGGTCTGTGTC 60.109 60.000 0.00 0.00 0.00 3.67
1556 1586 2.627945 GTGTCAAACACCTGTCAGTCA 58.372 47.619 0.00 0.00 43.05 3.41
1704 1734 1.002366 CTGCTCGTCAGGTACATTGC 58.998 55.000 0.00 0.00 39.15 3.56
1717 1747 3.371595 GGTACATTGCCATCCACCTAACT 60.372 47.826 0.00 0.00 0.00 2.24
1723 1753 1.139853 GCCATCCACCTAACTCTCTGG 59.860 57.143 0.00 0.00 0.00 3.86
1729 1759 3.055094 TCCACCTAACTCTCTGGATTTGC 60.055 47.826 0.00 0.00 0.00 3.68
1758 1817 7.012959 GCTTTTGGTGTTTACCTATAGCTAC 57.987 40.000 12.98 0.00 45.69 3.58
1759 1818 6.822170 GCTTTTGGTGTTTACCTATAGCTACT 59.178 38.462 12.98 0.00 45.69 2.57
1901 1962 1.596260 CAGGCAAGCATGATACACTCG 59.404 52.381 0.00 0.00 0.00 4.18
1904 1965 3.118775 AGGCAAGCATGATACACTCGTAA 60.119 43.478 0.00 0.00 0.00 3.18
1957 2020 4.395959 TGACTCGACTTTGTTTACCACT 57.604 40.909 0.00 0.00 0.00 4.00
2050 2116 5.532406 AGAGAAGCAACATAATTGTGTGTGT 59.468 36.000 8.74 0.00 35.83 3.72
2102 2168 6.482641 TGTTCTACGCCATGTTTAACAACTTA 59.517 34.615 0.66 0.00 33.58 2.24
2108 2174 6.431852 ACGCCATGTTTAACAACTTATAGGTT 59.568 34.615 0.66 0.00 33.58 3.50
2111 2177 7.753580 GCCATGTTTAACAACTTATAGGTTCAC 59.246 37.037 0.66 0.00 33.58 3.18
2137 2203 1.980772 AGCAAGGCCAGGTTGATGC 60.981 57.895 5.01 3.59 0.00 3.91
2142 2208 0.323178 AGGCCAGGTTGATGCTTCAG 60.323 55.000 5.01 0.00 32.27 3.02
2173 2239 3.827008 TGCACAGATACCAGAATCTCC 57.173 47.619 0.00 0.00 33.87 3.71
2177 2243 4.342378 GCACAGATACCAGAATCTCCTGTA 59.658 45.833 0.00 0.00 33.87 2.74
2180 2246 7.504403 CACAGATACCAGAATCTCCTGTAAAT 58.496 38.462 0.00 0.00 33.87 1.40
2211 2278 4.650972 AGCACAATGACTTTACCCCTTA 57.349 40.909 0.00 0.00 0.00 2.69
2546 2617 7.341805 AGACCAAACTAGACAATATGCAGAAT 58.658 34.615 0.00 0.00 0.00 2.40
2700 2771 2.039746 CCAGGATGTTAGACCAACCACA 59.960 50.000 0.00 0.00 36.20 4.17
2712 2783 2.964464 ACCAACCACATTTCATCTGCAA 59.036 40.909 0.00 0.00 0.00 4.08
2715 2786 1.541147 ACCACATTTCATCTGCAACCG 59.459 47.619 0.00 0.00 0.00 4.44
2723 2794 3.953712 TCATCTGCAACCGAAGTTAGA 57.046 42.857 0.00 0.00 33.27 2.10
2748 2819 8.503486 ACACTCGTATTAGATATAAGCAAACG 57.497 34.615 0.00 0.00 0.00 3.60
2754 2825 8.748582 CGTATTAGATATAAGCAAACGAACACA 58.251 33.333 0.00 0.00 0.00 3.72
2845 2916 5.220854 CCTCATACCGATTTCACACATTTCC 60.221 44.000 0.00 0.00 0.00 3.13
2846 2917 4.331443 TCATACCGATTTCACACATTTCCG 59.669 41.667 0.00 0.00 0.00 4.30
2869 2940 0.391228 TTCTACAGTGCAACGCTGGA 59.609 50.000 12.35 3.08 45.11 3.86
2952 3023 5.395435 GGAGGGAGTCAATAACTAACCAGTC 60.395 48.000 0.00 0.00 38.74 3.51
3007 3078 0.106708 AGCAACTCTGAAACAGCCGA 59.893 50.000 0.00 0.00 0.00 5.54
3094 3165 5.486735 TTTGATGGATCCTGCAACAAAAT 57.513 34.783 14.23 0.00 37.48 1.82
3097 3168 6.211587 TGATGGATCCTGCAACAAAATAAG 57.788 37.500 14.23 0.00 0.00 1.73
3103 3174 5.726980 TCCTGCAACAAAATAAGCAAGAT 57.273 34.783 0.00 0.00 36.44 2.40
3104 3175 5.713025 TCCTGCAACAAAATAAGCAAGATC 58.287 37.500 0.00 0.00 36.44 2.75
3105 3176 4.560035 CCTGCAACAAAATAAGCAAGATCG 59.440 41.667 0.00 0.00 36.44 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 5.681105 CCGAATTTTCTATTTACCGCACATG 59.319 40.000 0.00 0.00 0.00 3.21
4 5 5.587043 TCCGAATTTTCTATTTACCGCACAT 59.413 36.000 0.00 0.00 0.00 3.21
5 6 4.936411 TCCGAATTTTCTATTTACCGCACA 59.064 37.500 0.00 0.00 0.00 4.57
6 7 5.064325 ACTCCGAATTTTCTATTTACCGCAC 59.936 40.000 0.00 0.00 0.00 5.34
7 8 5.180271 ACTCCGAATTTTCTATTTACCGCA 58.820 37.500 0.00 0.00 0.00 5.69
8 9 5.729974 ACTCCGAATTTTCTATTTACCGC 57.270 39.130 0.00 0.00 0.00 5.68
9 10 6.898189 CGAAACTCCGAATTTTCTATTTACCG 59.102 38.462 0.00 0.00 30.79 4.02
10 11 7.184779 CCGAAACTCCGAATTTTCTATTTACC 58.815 38.462 0.00 0.00 30.79 2.85
11 12 7.148356 ACCCGAAACTCCGAATTTTCTATTTAC 60.148 37.037 0.00 0.00 30.79 2.01
12 13 6.880529 ACCCGAAACTCCGAATTTTCTATTTA 59.119 34.615 0.00 0.00 30.79 1.40
13 14 5.708697 ACCCGAAACTCCGAATTTTCTATTT 59.291 36.000 0.00 0.00 30.79 1.40
14 15 5.123344 CACCCGAAACTCCGAATTTTCTATT 59.877 40.000 0.00 0.00 30.79 1.73
15 16 4.634443 CACCCGAAACTCCGAATTTTCTAT 59.366 41.667 0.00 0.00 30.79 1.98
16 17 3.998341 CACCCGAAACTCCGAATTTTCTA 59.002 43.478 0.00 0.00 30.79 2.10
17 18 2.812011 CACCCGAAACTCCGAATTTTCT 59.188 45.455 0.00 0.00 30.79 2.52
18 19 2.551032 ACACCCGAAACTCCGAATTTTC 59.449 45.455 0.00 0.00 0.00 2.29
19 20 2.292292 CACACCCGAAACTCCGAATTTT 59.708 45.455 0.00 0.00 0.00 1.82
20 21 1.877443 CACACCCGAAACTCCGAATTT 59.123 47.619 0.00 0.00 0.00 1.82
21 22 1.202722 ACACACCCGAAACTCCGAATT 60.203 47.619 0.00 0.00 0.00 2.17
22 23 0.395312 ACACACCCGAAACTCCGAAT 59.605 50.000 0.00 0.00 0.00 3.34
23 24 0.531090 CACACACCCGAAACTCCGAA 60.531 55.000 0.00 0.00 0.00 4.30
24 25 1.068417 CACACACCCGAAACTCCGA 59.932 57.895 0.00 0.00 0.00 4.55
25 26 1.959226 CCACACACCCGAAACTCCG 60.959 63.158 0.00 0.00 0.00 4.63
26 27 0.602905 CTCCACACACCCGAAACTCC 60.603 60.000 0.00 0.00 0.00 3.85
27 28 0.106149 ACTCCACACACCCGAAACTC 59.894 55.000 0.00 0.00 0.00 3.01
28 29 0.106149 GACTCCACACACCCGAAACT 59.894 55.000 0.00 0.00 0.00 2.66
29 30 1.219522 CGACTCCACACACCCGAAAC 61.220 60.000 0.00 0.00 0.00 2.78
30 31 1.068417 CGACTCCACACACCCGAAA 59.932 57.895 0.00 0.00 0.00 3.46
31 32 2.732016 CGACTCCACACACCCGAA 59.268 61.111 0.00 0.00 0.00 4.30
32 33 3.986006 GCGACTCCACACACCCGA 61.986 66.667 0.00 0.00 0.00 5.14
33 34 4.293648 TGCGACTCCACACACCCG 62.294 66.667 0.00 0.00 0.00 5.28
34 35 2.357517 CTGCGACTCCACACACCC 60.358 66.667 0.00 0.00 0.00 4.61
35 36 2.357517 CCTGCGACTCCACACACC 60.358 66.667 0.00 0.00 0.00 4.16
36 37 1.664965 GACCTGCGACTCCACACAC 60.665 63.158 0.00 0.00 0.00 3.82
37 38 1.399744 AAGACCTGCGACTCCACACA 61.400 55.000 0.00 0.00 0.00 3.72
38 39 0.946221 CAAGACCTGCGACTCCACAC 60.946 60.000 0.00 0.00 0.00 3.82
39 40 1.367471 CAAGACCTGCGACTCCACA 59.633 57.895 0.00 0.00 0.00 4.17
40 41 1.374758 CCAAGACCTGCGACTCCAC 60.375 63.158 0.00 0.00 0.00 4.02
41 42 3.059982 CCAAGACCTGCGACTCCA 58.940 61.111 0.00 0.00 0.00 3.86
42 43 2.435059 GCCAAGACCTGCGACTCC 60.435 66.667 0.00 0.00 0.00 3.85
43 44 2.435059 GGCCAAGACCTGCGACTC 60.435 66.667 0.00 0.00 0.00 3.36
44 45 4.379243 CGGCCAAGACCTGCGACT 62.379 66.667 2.24 0.00 0.00 4.18
45 46 3.291101 TACGGCCAAGACCTGCGAC 62.291 63.158 2.24 0.00 0.00 5.19
46 47 2.992689 TACGGCCAAGACCTGCGA 60.993 61.111 2.24 0.00 0.00 5.10
47 48 2.509336 CTACGGCCAAGACCTGCG 60.509 66.667 2.24 0.00 0.00 5.18
48 49 2.820037 GCTACGGCCAAGACCTGC 60.820 66.667 2.24 0.00 0.00 4.85
49 50 0.464036 TATGCTACGGCCAAGACCTG 59.536 55.000 2.24 0.00 37.74 4.00
50 51 0.753262 CTATGCTACGGCCAAGACCT 59.247 55.000 2.24 0.00 37.74 3.85
51 52 0.464452 ACTATGCTACGGCCAAGACC 59.536 55.000 2.24 0.00 37.74 3.85
52 53 2.288273 CCTACTATGCTACGGCCAAGAC 60.288 54.545 2.24 0.00 37.74 3.01
53 54 1.961394 CCTACTATGCTACGGCCAAGA 59.039 52.381 2.24 0.00 37.74 3.02
54 55 1.000955 CCCTACTATGCTACGGCCAAG 59.999 57.143 2.24 0.00 37.74 3.61
55 56 1.045407 CCCTACTATGCTACGGCCAA 58.955 55.000 2.24 0.00 37.74 4.52
56 57 0.186630 TCCCTACTATGCTACGGCCA 59.813 55.000 2.24 0.00 37.74 5.36
57 58 1.335145 TTCCCTACTATGCTACGGCC 58.665 55.000 0.00 0.00 37.74 6.13
58 59 3.679824 ATTTCCCTACTATGCTACGGC 57.320 47.619 0.00 0.00 39.26 5.68
59 60 6.405953 CCAGATATTTCCCTACTATGCTACGG 60.406 46.154 0.00 0.00 0.00 4.02
60 61 6.153000 ACCAGATATTTCCCTACTATGCTACG 59.847 42.308 0.00 0.00 0.00 3.51
61 62 7.324178 CACCAGATATTTCCCTACTATGCTAC 58.676 42.308 0.00 0.00 0.00 3.58
62 63 6.070767 GCACCAGATATTTCCCTACTATGCTA 60.071 42.308 0.00 0.00 0.00 3.49
63 64 5.280215 GCACCAGATATTTCCCTACTATGCT 60.280 44.000 0.00 0.00 0.00 3.79
64 65 4.938226 GCACCAGATATTTCCCTACTATGC 59.062 45.833 0.00 0.00 0.00 3.14
65 66 5.934625 GTGCACCAGATATTTCCCTACTATG 59.065 44.000 5.22 0.00 0.00 2.23
66 67 5.013183 GGTGCACCAGATATTTCCCTACTAT 59.987 44.000 31.23 0.00 35.64 2.12
67 68 4.347000 GGTGCACCAGATATTTCCCTACTA 59.653 45.833 31.23 0.00 35.64 1.82
68 69 3.136626 GGTGCACCAGATATTTCCCTACT 59.863 47.826 31.23 0.00 35.64 2.57
69 70 3.477530 GGTGCACCAGATATTTCCCTAC 58.522 50.000 31.23 0.00 35.64 3.18
70 71 2.104111 CGGTGCACCAGATATTTCCCTA 59.896 50.000 34.16 0.00 35.14 3.53
71 72 1.134098 CGGTGCACCAGATATTTCCCT 60.134 52.381 34.16 0.00 35.14 4.20
72 73 1.308998 CGGTGCACCAGATATTTCCC 58.691 55.000 34.16 3.99 35.14 3.97
73 74 1.134220 TCCGGTGCACCAGATATTTCC 60.134 52.381 34.16 4.55 35.14 3.13
74 75 2.213499 CTCCGGTGCACCAGATATTTC 58.787 52.381 34.16 5.28 35.14 2.17
75 76 1.747206 GCTCCGGTGCACCAGATATTT 60.747 52.381 34.16 0.00 35.14 1.40
76 77 0.179045 GCTCCGGTGCACCAGATATT 60.179 55.000 34.16 0.00 35.14 1.28
77 78 1.050988 AGCTCCGGTGCACCAGATAT 61.051 55.000 34.16 17.14 35.14 1.63
78 79 1.264749 AAGCTCCGGTGCACCAGATA 61.265 55.000 34.16 15.43 35.14 1.98
79 80 2.596851 AAGCTCCGGTGCACCAGAT 61.597 57.895 34.16 21.47 35.14 2.90
80 81 3.241530 AAGCTCCGGTGCACCAGA 61.242 61.111 34.16 27.41 35.14 3.86
81 82 2.449031 TACAAGCTCCGGTGCACCAG 62.449 60.000 34.16 25.24 35.14 4.00
82 83 2.449031 CTACAAGCTCCGGTGCACCA 62.449 60.000 34.16 16.11 35.14 4.17
83 84 1.741770 CTACAAGCTCCGGTGCACC 60.742 63.158 28.68 26.78 34.99 5.01
84 85 1.004918 ACTACAAGCTCCGGTGCAC 60.005 57.895 28.68 8.80 34.99 4.57
85 86 1.005037 CACTACAAGCTCCGGTGCA 60.005 57.895 28.68 8.58 34.99 4.57
86 87 2.391389 GCACTACAAGCTCCGGTGC 61.391 63.158 20.71 20.71 44.53 5.01
87 88 0.530744 TAGCACTACAAGCTCCGGTG 59.469 55.000 0.00 0.00 42.32 4.94
88 89 0.531200 GTAGCACTACAAGCTCCGGT 59.469 55.000 0.00 0.00 42.32 5.28
89 90 0.179108 GGTAGCACTACAAGCTCCGG 60.179 60.000 9.87 0.00 42.32 5.14
90 91 0.525668 CGGTAGCACTACAAGCTCCG 60.526 60.000 9.87 10.09 42.32 4.63
91 92 0.179108 CCGGTAGCACTACAAGCTCC 60.179 60.000 9.87 0.00 42.32 4.70
92 93 0.531200 ACCGGTAGCACTACAAGCTC 59.469 55.000 4.49 0.00 42.32 4.09
93 94 0.531200 GACCGGTAGCACTACAAGCT 59.469 55.000 7.34 0.00 45.77 3.74
94 95 0.459759 GGACCGGTAGCACTACAAGC 60.460 60.000 7.34 0.00 37.78 4.01
95 96 0.892755 TGGACCGGTAGCACTACAAG 59.107 55.000 7.34 3.04 37.78 3.16
96 97 0.604578 GTGGACCGGTAGCACTACAA 59.395 55.000 7.34 0.00 37.78 2.41
97 98 1.252904 GGTGGACCGGTAGCACTACA 61.253 60.000 7.34 0.00 37.78 2.74
98 99 1.514553 GGTGGACCGGTAGCACTAC 59.485 63.158 7.34 2.44 35.40 2.73
99 100 4.023137 GGTGGACCGGTAGCACTA 57.977 61.111 7.34 0.00 0.00 2.74
109 110 1.940613 GCAATATGAGTTCGGTGGACC 59.059 52.381 0.00 0.00 0.00 4.46
110 111 1.593006 CGCAATATGAGTTCGGTGGAC 59.407 52.381 0.00 0.00 0.00 4.02
111 112 1.934589 CGCAATATGAGTTCGGTGGA 58.065 50.000 0.00 0.00 0.00 4.02
112 113 0.304705 GCGCAATATGAGTTCGGTGG 59.695 55.000 0.30 0.00 0.00 4.61
113 114 1.290203 AGCGCAATATGAGTTCGGTG 58.710 50.000 11.47 0.00 0.00 4.94
114 115 2.024176 AAGCGCAATATGAGTTCGGT 57.976 45.000 11.47 0.00 0.00 4.69
115 116 4.530094 TTAAAGCGCAATATGAGTTCGG 57.470 40.909 11.47 0.00 0.00 4.30
116 117 7.008266 ACAATTTTAAAGCGCAATATGAGTTCG 59.992 33.333 11.47 0.00 0.00 3.95
117 118 8.173321 ACAATTTTAAAGCGCAATATGAGTTC 57.827 30.769 11.47 0.00 0.00 3.01
118 119 8.532977 AACAATTTTAAAGCGCAATATGAGTT 57.467 26.923 11.47 0.77 0.00 3.01
119 120 7.812191 TGAACAATTTTAAAGCGCAATATGAGT 59.188 29.630 11.47 0.00 0.00 3.41
120 121 8.172159 TGAACAATTTTAAAGCGCAATATGAG 57.828 30.769 11.47 0.00 0.00 2.90
121 122 8.526218 TTGAACAATTTTAAAGCGCAATATGA 57.474 26.923 11.47 0.00 0.00 2.15
122 123 9.591404 TTTTGAACAATTTTAAAGCGCAATATG 57.409 25.926 11.47 4.43 0.00 1.78
159 160 7.840342 TGTTGTGTGAATGTGCTAAATTTTT 57.160 28.000 0.00 0.00 0.00 1.94
160 161 7.710044 TGATGTTGTGTGAATGTGCTAAATTTT 59.290 29.630 0.00 0.00 0.00 1.82
161 162 7.208777 TGATGTTGTGTGAATGTGCTAAATTT 58.791 30.769 0.00 0.00 0.00 1.82
162 163 6.747125 TGATGTTGTGTGAATGTGCTAAATT 58.253 32.000 0.00 0.00 0.00 1.82
163 164 6.330004 TGATGTTGTGTGAATGTGCTAAAT 57.670 33.333 0.00 0.00 0.00 1.40
164 165 5.764487 TGATGTTGTGTGAATGTGCTAAA 57.236 34.783 0.00 0.00 0.00 1.85
165 166 5.764487 TTGATGTTGTGTGAATGTGCTAA 57.236 34.783 0.00 0.00 0.00 3.09
166 167 5.241285 ACATTGATGTTGTGTGAATGTGCTA 59.759 36.000 0.00 0.00 37.90 3.49
167 168 4.038282 ACATTGATGTTGTGTGAATGTGCT 59.962 37.500 0.00 0.00 37.90 4.40
168 169 4.300803 ACATTGATGTTGTGTGAATGTGC 58.699 39.130 0.00 0.00 37.90 4.57
169 170 6.088173 CCTACATTGATGTTGTGTGAATGTG 58.912 40.000 1.46 0.00 41.97 3.21
170 171 5.769662 ACCTACATTGATGTTGTGTGAATGT 59.230 36.000 1.46 0.00 41.97 2.71
171 172 6.258230 ACCTACATTGATGTTGTGTGAATG 57.742 37.500 1.46 0.00 41.97 2.67
172 173 6.265196 ACAACCTACATTGATGTTGTGTGAAT 59.735 34.615 16.54 0.00 46.80 2.57
173 174 5.592282 ACAACCTACATTGATGTTGTGTGAA 59.408 36.000 16.54 0.00 46.80 3.18
174 175 5.129634 ACAACCTACATTGATGTTGTGTGA 58.870 37.500 16.54 0.00 46.80 3.58
175 176 5.437289 ACAACCTACATTGATGTTGTGTG 57.563 39.130 16.54 3.76 46.80 3.82
179 180 5.687770 TGTGACAACCTACATTGATGTTG 57.312 39.130 1.46 12.64 41.97 3.33
180 181 6.707440 TTTGTGACAACCTACATTGATGTT 57.293 33.333 0.00 0.00 41.97 2.71
181 182 6.707440 TTTTGTGACAACCTACATTGATGT 57.293 33.333 0.00 1.84 44.48 3.06
182 183 8.592105 AATTTTTGTGACAACCTACATTGATG 57.408 30.769 0.00 0.00 33.57 3.07
183 184 8.420222 TGAATTTTTGTGACAACCTACATTGAT 58.580 29.630 0.00 0.00 33.57 2.57
184 185 7.776107 TGAATTTTTGTGACAACCTACATTGA 58.224 30.769 0.00 0.00 33.57 2.57
185 186 8.417780 TTGAATTTTTGTGACAACCTACATTG 57.582 30.769 0.00 0.00 35.59 2.82
186 187 8.257306 ACTTGAATTTTTGTGACAACCTACATT 58.743 29.630 0.00 0.00 0.00 2.71
187 188 7.781056 ACTTGAATTTTTGTGACAACCTACAT 58.219 30.769 0.00 0.00 0.00 2.29
188 189 7.094162 TGACTTGAATTTTTGTGACAACCTACA 60.094 33.333 0.00 0.00 0.00 2.74
189 190 7.254852 TGACTTGAATTTTTGTGACAACCTAC 58.745 34.615 0.00 0.00 0.00 3.18
190 191 7.397892 TGACTTGAATTTTTGTGACAACCTA 57.602 32.000 0.00 0.00 0.00 3.08
191 192 6.279513 TGACTTGAATTTTTGTGACAACCT 57.720 33.333 0.00 0.00 0.00 3.50
192 193 6.959671 TTGACTTGAATTTTTGTGACAACC 57.040 33.333 0.00 0.00 0.00 3.77
193 194 9.824534 AATTTTGACTTGAATTTTTGTGACAAC 57.175 25.926 0.00 0.00 0.00 3.32
195 196 9.823098 CAAATTTTGACTTGAATTTTTGTGACA 57.177 25.926 2.88 0.00 34.25 3.58
255 256 9.832445 CCCAAGTTATGTTACATACTATTCACT 57.168 33.333 4.35 2.29 0.00 3.41
256 257 8.557029 GCCCAAGTTATGTTACATACTATTCAC 58.443 37.037 4.35 0.00 0.00 3.18
257 258 8.491134 AGCCCAAGTTATGTTACATACTATTCA 58.509 33.333 4.35 0.00 0.00 2.57
258 259 8.904099 AGCCCAAGTTATGTTACATACTATTC 57.096 34.615 4.35 0.00 0.00 1.75
259 260 9.695155 AAAGCCCAAGTTATGTTACATACTATT 57.305 29.630 4.35 0.00 0.00 1.73
261 262 9.826574 CTAAAGCCCAAGTTATGTTACATACTA 57.173 33.333 4.35 0.00 0.00 1.82
262 263 8.545472 TCTAAAGCCCAAGTTATGTTACATACT 58.455 33.333 4.35 3.54 0.00 2.12
263 264 8.726870 TCTAAAGCCCAAGTTATGTTACATAC 57.273 34.615 4.35 1.35 0.00 2.39
264 265 9.914834 AATCTAAAGCCCAAGTTATGTTACATA 57.085 29.630 0.29 0.29 0.00 2.29
265 266 8.823220 AATCTAAAGCCCAAGTTATGTTACAT 57.177 30.769 2.58 2.58 0.00 2.29
266 267 8.519526 CAAATCTAAAGCCCAAGTTATGTTACA 58.480 33.333 0.00 0.00 0.00 2.41
267 268 7.973944 CCAAATCTAAAGCCCAAGTTATGTTAC 59.026 37.037 0.00 0.00 0.00 2.50
268 269 7.363443 GCCAAATCTAAAGCCCAAGTTATGTTA 60.363 37.037 0.00 0.00 0.00 2.41
269 270 6.574269 GCCAAATCTAAAGCCCAAGTTATGTT 60.574 38.462 0.00 0.00 0.00 2.71
270 271 5.105351 GCCAAATCTAAAGCCCAAGTTATGT 60.105 40.000 0.00 0.00 0.00 2.29
271 272 5.351458 GCCAAATCTAAAGCCCAAGTTATG 58.649 41.667 0.00 0.00 0.00 1.90
272 273 4.405680 GGCCAAATCTAAAGCCCAAGTTAT 59.594 41.667 0.00 0.00 39.60 1.89
273 274 3.767131 GGCCAAATCTAAAGCCCAAGTTA 59.233 43.478 0.00 0.00 39.60 2.24
274 275 2.567169 GGCCAAATCTAAAGCCCAAGTT 59.433 45.455 0.00 0.00 39.60 2.66
275 276 2.179427 GGCCAAATCTAAAGCCCAAGT 58.821 47.619 0.00 0.00 39.60 3.16
276 277 2.967599 GGCCAAATCTAAAGCCCAAG 57.032 50.000 0.00 0.00 39.60 3.61
280 281 4.588528 TGATAATGGGCCAAATCTAAAGCC 59.411 41.667 24.45 0.00 44.99 4.35
281 282 5.068987 TGTGATAATGGGCCAAATCTAAAGC 59.931 40.000 24.45 14.04 0.00 3.51
282 283 6.096705 TGTGTGATAATGGGCCAAATCTAAAG 59.903 38.462 24.45 0.00 0.00 1.85
283 284 5.954752 TGTGTGATAATGGGCCAAATCTAAA 59.045 36.000 24.45 12.01 0.00 1.85
284 285 5.514169 TGTGTGATAATGGGCCAAATCTAA 58.486 37.500 24.45 14.47 0.00 2.10
285 286 5.104151 TCTGTGTGATAATGGGCCAAATCTA 60.104 40.000 24.45 15.14 0.00 1.98
286 287 3.956199 CTGTGTGATAATGGGCCAAATCT 59.044 43.478 24.45 9.19 0.00 2.40
287 288 3.953612 TCTGTGTGATAATGGGCCAAATC 59.046 43.478 11.89 17.28 0.00 2.17
288 289 3.979911 TCTGTGTGATAATGGGCCAAAT 58.020 40.909 11.89 7.49 0.00 2.32
289 290 3.448093 TCTGTGTGATAATGGGCCAAA 57.552 42.857 11.89 1.34 0.00 3.28
290 291 3.289836 CATCTGTGTGATAATGGGCCAA 58.710 45.455 11.89 0.00 33.36 4.52
291 292 2.241941 ACATCTGTGTGATAATGGGCCA 59.758 45.455 9.61 9.61 37.14 5.36
292 293 2.880890 GACATCTGTGTGATAATGGGCC 59.119 50.000 0.00 0.00 39.09 5.80
293 294 3.544684 TGACATCTGTGTGATAATGGGC 58.455 45.455 0.00 0.00 39.09 5.36
294 295 5.649395 AGTTTGACATCTGTGTGATAATGGG 59.351 40.000 0.00 0.00 39.09 4.00
295 296 6.748333 AGTTTGACATCTGTGTGATAATGG 57.252 37.500 0.00 0.00 39.09 3.16
296 297 7.587629 ACAAGTTTGACATCTGTGTGATAATG 58.412 34.615 0.00 0.00 39.09 1.90
297 298 7.445096 TGACAAGTTTGACATCTGTGTGATAAT 59.555 33.333 0.00 0.00 39.09 1.28
298 299 6.765512 TGACAAGTTTGACATCTGTGTGATAA 59.234 34.615 0.00 0.00 39.09 1.75
299 300 6.287525 TGACAAGTTTGACATCTGTGTGATA 58.712 36.000 0.00 0.00 39.09 2.15
300 301 5.125356 TGACAAGTTTGACATCTGTGTGAT 58.875 37.500 0.00 0.00 39.09 3.06
301 302 4.512484 TGACAAGTTTGACATCTGTGTGA 58.488 39.130 0.00 0.00 39.09 3.58
302 303 4.880886 TGACAAGTTTGACATCTGTGTG 57.119 40.909 0.00 0.00 39.09 3.82
303 304 6.455360 AAATGACAAGTTTGACATCTGTGT 57.545 33.333 9.56 0.00 41.39 3.72
304 305 7.276218 ACAAAAATGACAAGTTTGACATCTGTG 59.724 33.333 16.80 5.19 41.39 3.66
305 306 7.322664 ACAAAAATGACAAGTTTGACATCTGT 58.677 30.769 16.80 10.20 41.39 3.41
306 307 7.760131 ACAAAAATGACAAGTTTGACATCTG 57.240 32.000 16.80 9.74 41.39 2.90
307 308 9.683069 GATACAAAAATGACAAGTTTGACATCT 57.317 29.630 16.80 0.00 41.39 2.90
308 309 9.683069 AGATACAAAAATGACAAGTTTGACATC 57.317 29.630 16.80 16.21 41.39 3.06
347 348 9.521503 TGTCACAAAATTTCGTATCAAAATTGA 57.478 25.926 0.00 0.00 42.14 2.57
350 351 9.689976 TGATGTCACAAAATTTCGTATCAAAAT 57.310 25.926 0.00 0.00 0.00 1.82
351 352 9.689976 ATGATGTCACAAAATTTCGTATCAAAA 57.310 25.926 0.00 0.00 0.00 2.44
353 354 9.767684 GTATGATGTCACAAAATTTCGTATCAA 57.232 29.630 0.00 0.00 0.00 2.57
354 355 8.940952 TGTATGATGTCACAAAATTTCGTATCA 58.059 29.630 0.00 0.00 0.00 2.15
355 356 9.935682 ATGTATGATGTCACAAAATTTCGTATC 57.064 29.630 0.00 0.00 0.00 2.24
357 358 9.553418 CAATGTATGATGTCACAAAATTTCGTA 57.447 29.630 0.00 0.00 0.00 3.43
358 359 8.296000 TCAATGTATGATGTCACAAAATTTCGT 58.704 29.630 0.00 0.00 31.50 3.85
359 360 8.672214 TCAATGTATGATGTCACAAAATTTCG 57.328 30.769 0.00 0.00 31.50 3.46
374 375 7.754475 GCACATTAACACAACATCAATGTATGA 59.246 33.333 12.02 0.00 40.80 2.15
375 376 7.756272 AGCACATTAACACAACATCAATGTATG 59.244 33.333 0.00 1.54 40.80 2.39
376 377 7.829725 AGCACATTAACACAACATCAATGTAT 58.170 30.769 0.00 0.00 40.80 2.29
377 378 7.213216 AGCACATTAACACAACATCAATGTA 57.787 32.000 0.00 0.00 40.80 2.29
378 379 6.088016 AGCACATTAACACAACATCAATGT 57.912 33.333 0.00 0.00 44.20 2.71
379 380 7.482743 GTCTAGCACATTAACACAACATCAATG 59.517 37.037 0.00 0.00 33.75 2.82
380 381 7.391554 AGTCTAGCACATTAACACAACATCAAT 59.608 33.333 0.00 0.00 0.00 2.57
381 382 6.710295 AGTCTAGCACATTAACACAACATCAA 59.290 34.615 0.00 0.00 0.00 2.57
382 383 6.230472 AGTCTAGCACATTAACACAACATCA 58.770 36.000 0.00 0.00 0.00 3.07
383 384 6.727824 AGTCTAGCACATTAACACAACATC 57.272 37.500 0.00 0.00 0.00 3.06
384 385 7.510549 AAAGTCTAGCACATTAACACAACAT 57.489 32.000 0.00 0.00 0.00 2.71
385 386 6.935741 AAAGTCTAGCACATTAACACAACA 57.064 33.333 0.00 0.00 0.00 3.33
415 416 9.097257 CGGATGCCATAGAACATTTTTAAAAAT 57.903 29.630 18.40 18.40 39.07 1.82
416 417 8.091449 ACGGATGCCATAGAACATTTTTAAAAA 58.909 29.630 15.38 15.38 0.00 1.94
417 418 7.543868 CACGGATGCCATAGAACATTTTTAAAA 59.456 33.333 0.00 0.00 0.00 1.52
418 419 7.032580 CACGGATGCCATAGAACATTTTTAAA 58.967 34.615 0.00 0.00 0.00 1.52
419 420 6.559810 CACGGATGCCATAGAACATTTTTAA 58.440 36.000 0.00 0.00 0.00 1.52
420 421 5.449862 GCACGGATGCCATAGAACATTTTTA 60.450 40.000 0.00 0.00 46.97 1.52
421 422 4.677779 GCACGGATGCCATAGAACATTTTT 60.678 41.667 0.00 0.00 46.97 1.94
422 423 3.181487 GCACGGATGCCATAGAACATTTT 60.181 43.478 0.00 0.00 46.97 1.82
423 424 2.358898 GCACGGATGCCATAGAACATTT 59.641 45.455 0.00 0.00 46.97 2.32
424 425 1.949525 GCACGGATGCCATAGAACATT 59.050 47.619 0.00 0.00 46.97 2.71
425 426 1.597742 GCACGGATGCCATAGAACAT 58.402 50.000 0.00 0.00 46.97 2.71
426 427 3.079131 GCACGGATGCCATAGAACA 57.921 52.632 0.00 0.00 46.97 3.18
442 443 3.108288 TTGTGGTGCTACCGGTGCA 62.108 57.895 19.93 21.51 42.58 4.57
443 444 2.281208 TTGTGGTGCTACCGGTGC 60.281 61.111 19.93 19.04 42.58 5.01
444 445 1.070786 ACTTGTGGTGCTACCGGTG 59.929 57.895 19.93 8.61 42.58 4.94
445 446 1.070786 CACTTGTGGTGCTACCGGT 59.929 57.895 13.98 13.98 42.58 5.28
446 447 3.966215 CACTTGTGGTGCTACCGG 58.034 61.111 0.00 0.00 42.58 5.28
453 454 2.179547 TGCACTCGCACTTGTGGTG 61.180 57.895 2.81 4.03 45.36 4.17
454 455 2.189257 TGCACTCGCACTTGTGGT 59.811 55.556 2.81 0.00 45.36 4.16
463 464 1.594862 GAATGTATCCTGTGCACTCGC 59.405 52.381 19.41 3.20 39.24 5.03
464 465 2.205074 GGAATGTATCCTGTGCACTCG 58.795 52.381 19.41 9.02 45.56 4.18
475 476 6.512342 ACTACTATGCTACGGGAATGTATC 57.488 41.667 0.00 0.00 0.00 2.24
476 477 8.591114 ATTACTACTATGCTACGGGAATGTAT 57.409 34.615 0.00 0.00 0.00 2.29
477 478 8.413309 AATTACTACTATGCTACGGGAATGTA 57.587 34.615 0.00 0.00 0.00 2.29
478 479 6.912951 ATTACTACTATGCTACGGGAATGT 57.087 37.500 0.00 0.00 0.00 2.71
479 480 6.812160 GGAATTACTACTATGCTACGGGAATG 59.188 42.308 0.00 0.00 0.00 2.67
480 481 6.349944 CGGAATTACTACTATGCTACGGGAAT 60.350 42.308 0.00 0.00 0.00 3.01
481 482 5.048504 CGGAATTACTACTATGCTACGGGAA 60.049 44.000 0.00 0.00 0.00 3.97
482 483 4.456911 CGGAATTACTACTATGCTACGGGA 59.543 45.833 0.00 0.00 0.00 5.14
483 484 4.217118 ACGGAATTACTACTATGCTACGGG 59.783 45.833 0.00 0.00 0.00 5.28
484 485 5.152097 CACGGAATTACTACTATGCTACGG 58.848 45.833 0.00 0.00 0.00 4.02
485 486 4.615961 GCACGGAATTACTACTATGCTACG 59.384 45.833 0.00 0.00 0.00 3.51
486 487 5.526115 TGCACGGAATTACTACTATGCTAC 58.474 41.667 0.00 0.00 33.03 3.58
487 488 5.777850 TGCACGGAATTACTACTATGCTA 57.222 39.130 0.00 0.00 33.03 3.49
488 489 4.665833 TGCACGGAATTACTACTATGCT 57.334 40.909 0.00 0.00 33.03 3.79
489 490 5.388475 CGAATGCACGGAATTACTACTATGC 60.388 44.000 0.00 0.00 0.00 3.14
490 491 5.918576 TCGAATGCACGGAATTACTACTATG 59.081 40.000 0.00 0.00 0.00 2.23
491 492 6.080648 TCGAATGCACGGAATTACTACTAT 57.919 37.500 0.00 0.00 0.00 2.12
492 493 5.503662 TCGAATGCACGGAATTACTACTA 57.496 39.130 0.00 0.00 0.00 1.82
493 494 4.380841 TCGAATGCACGGAATTACTACT 57.619 40.909 0.00 0.00 0.00 2.57
494 495 5.652744 AATCGAATGCACGGAATTACTAC 57.347 39.130 0.00 0.00 0.00 2.73
495 496 7.956420 ATAAATCGAATGCACGGAATTACTA 57.044 32.000 0.00 0.00 0.00 1.82
496 497 6.861065 ATAAATCGAATGCACGGAATTACT 57.139 33.333 0.00 0.00 0.00 2.24
497 498 7.534848 GAATAAATCGAATGCACGGAATTAC 57.465 36.000 0.00 0.00 0.00 1.89
513 514 8.305441 ACCAAACAATGAAAACCGAATAAATC 57.695 30.769 0.00 0.00 0.00 2.17
514 515 8.669946 AACCAAACAATGAAAACCGAATAAAT 57.330 26.923 0.00 0.00 0.00 1.40
515 516 8.494016 AAACCAAACAATGAAAACCGAATAAA 57.506 26.923 0.00 0.00 0.00 1.40
516 517 9.765795 ATAAACCAAACAATGAAAACCGAATAA 57.234 25.926 0.00 0.00 0.00 1.40
518 519 9.198837 GTATAAACCAAACAATGAAAACCGAAT 57.801 29.630 0.00 0.00 0.00 3.34
519 520 8.414778 AGTATAAACCAAACAATGAAAACCGAA 58.585 29.630 0.00 0.00 0.00 4.30
520 521 7.942990 AGTATAAACCAAACAATGAAAACCGA 58.057 30.769 0.00 0.00 0.00 4.69
521 522 8.582433 AAGTATAAACCAAACAATGAAAACCG 57.418 30.769 0.00 0.00 0.00 4.44
594 595 8.958119 TCACTCGGTAGCTTAAATCATATTTT 57.042 30.769 0.00 0.00 0.00 1.82
595 596 8.421784 TCTCACTCGGTAGCTTAAATCATATTT 58.578 33.333 0.00 0.00 0.00 1.40
596 597 7.952671 TCTCACTCGGTAGCTTAAATCATATT 58.047 34.615 0.00 0.00 0.00 1.28
597 598 7.526142 TCTCACTCGGTAGCTTAAATCATAT 57.474 36.000 0.00 0.00 0.00 1.78
598 599 6.954487 TCTCACTCGGTAGCTTAAATCATA 57.046 37.500 0.00 0.00 0.00 2.15
599 600 5.854010 TCTCACTCGGTAGCTTAAATCAT 57.146 39.130 0.00 0.00 0.00 2.45
600 601 5.592054 CATCTCACTCGGTAGCTTAAATCA 58.408 41.667 0.00 0.00 0.00 2.57
601 602 4.446051 GCATCTCACTCGGTAGCTTAAATC 59.554 45.833 0.00 0.00 0.00 2.17
602 603 4.100189 AGCATCTCACTCGGTAGCTTAAAT 59.900 41.667 0.00 0.00 0.00 1.40
603 604 3.447586 AGCATCTCACTCGGTAGCTTAAA 59.552 43.478 0.00 0.00 0.00 1.52
604 605 3.024547 AGCATCTCACTCGGTAGCTTAA 58.975 45.455 0.00 0.00 0.00 1.85
605 606 2.656002 AGCATCTCACTCGGTAGCTTA 58.344 47.619 0.00 0.00 0.00 3.09
606 607 1.479709 AGCATCTCACTCGGTAGCTT 58.520 50.000 0.00 0.00 0.00 3.74
607 608 1.950909 GTAGCATCTCACTCGGTAGCT 59.049 52.381 0.00 0.00 34.84 3.32
608 609 1.001158 GGTAGCATCTCACTCGGTAGC 60.001 57.143 0.00 0.00 0.00 3.58
609 610 1.264557 CGGTAGCATCTCACTCGGTAG 59.735 57.143 0.00 0.00 0.00 3.18
610 611 1.134310 TCGGTAGCATCTCACTCGGTA 60.134 52.381 0.00 0.00 0.00 4.02
611 612 0.393944 TCGGTAGCATCTCACTCGGT 60.394 55.000 0.00 0.00 0.00 4.69
612 613 0.309302 CTCGGTAGCATCTCACTCGG 59.691 60.000 0.00 0.00 0.00 4.63
613 614 3.835686 CTCGGTAGCATCTCACTCG 57.164 57.895 0.00 0.00 0.00 4.18
678 679 0.884704 TGACAAGTCGGAAGCCAAGC 60.885 55.000 0.00 0.00 0.00 4.01
709 710 4.399934 TCGCTGGGTTTTCTAAACTTGTTT 59.600 37.500 4.14 4.14 0.00 2.83
721 722 1.886542 GAACCTTGATCGCTGGGTTTT 59.113 47.619 11.02 0.00 41.44 2.43
728 729 3.126001 TGTTTCAGAACCTTGATCGCT 57.874 42.857 0.00 0.00 34.80 4.93
840 842 2.584835 TAGCTTGGCATGAACAGGTT 57.415 45.000 4.32 0.00 0.00 3.50
844 846 7.282585 ACTAGATTTATAGCTTGGCATGAACA 58.717 34.615 4.32 0.00 0.00 3.18
851 853 7.033185 GCTCTAGACTAGATTTATAGCTTGGC 58.967 42.308 12.62 4.71 33.66 4.52
954 957 2.475466 GCATCGTGCCTGGATGTGG 61.475 63.158 0.00 0.00 42.53 4.17
1004 1007 0.620556 AAGGCATGACAGGGTCGAAT 59.379 50.000 0.00 0.00 34.95 3.34
1073 1079 4.897357 CCGGCATGCTAGCGCTCA 62.897 66.667 16.34 7.38 36.97 4.26
1167 1173 4.796231 CCTCCGTCGCCGAACAGG 62.796 72.222 0.00 0.00 44.97 4.00
1276 1285 4.498520 CTGGCACTCGTCGGCGAT 62.499 66.667 14.65 0.00 46.80 4.58
1292 1301 5.021458 TCGGTAGGTTCCTCAAGAAATACT 58.979 41.667 0.00 0.00 35.85 2.12
1301 1310 0.962356 GACGGTCGGTAGGTTCCTCA 60.962 60.000 0.00 0.00 0.00 3.86
1302 1311 0.962356 TGACGGTCGGTAGGTTCCTC 60.962 60.000 3.34 0.00 0.00 3.71
1303 1312 0.540365 TTGACGGTCGGTAGGTTCCT 60.540 55.000 3.34 0.00 0.00 3.36
1305 1314 1.067354 ACATTGACGGTCGGTAGGTTC 60.067 52.381 3.34 0.00 0.00 3.62
1309 1318 2.666508 CTGAAACATTGACGGTCGGTAG 59.333 50.000 3.34 0.00 0.00 3.18
1311 1320 1.069513 TCTGAAACATTGACGGTCGGT 59.930 47.619 3.34 0.00 0.00 4.69
1315 1324 4.248859 CTCATCTCTGAAACATTGACGGT 58.751 43.478 0.00 0.00 0.00 4.83
1322 1331 4.298103 ACCTTGCTCATCTCTGAAACAT 57.702 40.909 0.00 0.00 0.00 2.71
1323 1332 3.777106 ACCTTGCTCATCTCTGAAACA 57.223 42.857 0.00 0.00 0.00 2.83
1329 1338 3.383185 GCTGTAGTACCTTGCTCATCTCT 59.617 47.826 0.00 0.00 0.00 3.10
1400 1424 3.490759 GCATGTCCCGTGTCAGCG 61.491 66.667 0.00 0.00 0.00 5.18
1435 1465 5.016051 AGCATCATCTCGTGTAGAAACAT 57.984 39.130 0.00 0.00 37.89 2.71
1446 1476 2.418777 TGCCGGAGCATCATCTCG 59.581 61.111 5.05 0.00 46.52 4.04
1540 1570 3.807622 ACGTTATGACTGACAGGTGTTTG 59.192 43.478 7.51 0.00 0.00 2.93
1547 1577 3.428870 GGTTGACACGTTATGACTGACAG 59.571 47.826 0.00 0.00 0.00 3.51
1704 1734 2.752030 TCCAGAGAGTTAGGTGGATGG 58.248 52.381 0.00 0.00 34.03 3.51
1723 1753 2.448477 CCAAAAGCTGGCGCAAATC 58.552 52.632 10.83 0.00 38.76 2.17
1752 1811 7.556635 TCTGCTCTCTAAATTGTACAGTAGCTA 59.443 37.037 9.19 0.00 0.00 3.32
1753 1812 6.378564 TCTGCTCTCTAAATTGTACAGTAGCT 59.621 38.462 9.19 0.00 0.00 3.32
1754 1813 6.565234 TCTGCTCTCTAAATTGTACAGTAGC 58.435 40.000 0.00 0.00 0.00 3.58
1755 1814 7.913297 GTCTCTGCTCTCTAAATTGTACAGTAG 59.087 40.741 0.00 0.07 0.00 2.57
1756 1815 7.393515 TGTCTCTGCTCTCTAAATTGTACAGTA 59.606 37.037 0.00 0.00 0.00 2.74
1757 1816 6.209589 TGTCTCTGCTCTCTAAATTGTACAGT 59.790 38.462 0.00 0.00 0.00 3.55
1758 1817 6.529829 GTGTCTCTGCTCTCTAAATTGTACAG 59.470 42.308 0.00 0.00 0.00 2.74
1759 1818 6.015434 TGTGTCTCTGCTCTCTAAATTGTACA 60.015 38.462 0.00 0.00 0.00 2.90
1815 1876 3.879998 TGTTCACTTGGCTACAGAAACA 58.120 40.909 0.00 0.00 0.00 2.83
1816 1877 4.261197 CCTTGTTCACTTGGCTACAGAAAC 60.261 45.833 0.00 0.00 0.00 2.78
1817 1878 3.882888 CCTTGTTCACTTGGCTACAGAAA 59.117 43.478 0.00 0.00 0.00 2.52
1818 1879 3.476552 CCTTGTTCACTTGGCTACAGAA 58.523 45.455 0.00 0.00 0.00 3.02
1862 1923 6.662755 TGCCTGGTAAATCATCTGTAGAATT 58.337 36.000 0.00 0.00 0.00 2.17
1923 1985 5.344743 AGTCGAGTCATTGTACATGGATT 57.655 39.130 0.00 0.00 0.00 3.01
1929 1991 6.201425 GGTAAACAAAGTCGAGTCATTGTACA 59.799 38.462 10.04 0.00 35.09 2.90
1933 1995 5.236478 AGTGGTAAACAAAGTCGAGTCATTG 59.764 40.000 0.00 0.00 0.00 2.82
1957 2020 0.829990 TACCGCATCCAGATTCTGCA 59.170 50.000 8.23 0.00 35.64 4.41
2050 2116 0.034186 GACCACCAGGCCAATGATGA 60.034 55.000 5.01 0.00 39.06 2.92
2102 2168 1.132500 GCTGCCCCTAGTGAACCTAT 58.868 55.000 0.00 0.00 0.00 2.57
2108 2174 2.971598 GCCTTGCTGCCCCTAGTGA 61.972 63.158 0.00 0.00 0.00 3.41
2173 2239 3.004629 TGTGCTTGCTGACCAATTTACAG 59.995 43.478 0.00 0.00 31.91 2.74
2177 2243 3.069872 TCATTGTGCTTGCTGACCAATTT 59.930 39.130 0.00 0.00 31.91 1.82
2180 2246 1.337703 GTCATTGTGCTTGCTGACCAA 59.662 47.619 2.55 0.00 33.51 3.67
2224 2291 5.751243 ACCAACAACAACTACTTTGCTAG 57.249 39.130 0.00 0.00 39.01 3.42
2237 2304 3.685139 TCCTTTTTGCAACCAACAACA 57.315 38.095 0.00 0.00 0.00 3.33
2269 2336 9.490379 GTGTCTCCGGTTATTCTTATATTCATT 57.510 33.333 0.00 0.00 0.00 2.57
2546 2617 6.719370 ACAGTAGCAATGAAAAGGAATGGTAA 59.281 34.615 0.00 0.00 0.00 2.85
2700 2771 5.122396 GTCTAACTTCGGTTGCAGATGAAAT 59.878 40.000 0.00 0.00 38.76 2.17
2712 2783 5.877012 TCTAATACGAGTGTCTAACTTCGGT 59.123 40.000 0.00 0.00 40.07 4.69
2723 2794 8.347771 TCGTTTGCTTATATCTAATACGAGTGT 58.652 33.333 0.00 0.00 32.53 3.55
2754 2825 8.918961 TTCGTTCTGTTTCATTTAACACAAAT 57.081 26.923 0.00 0.00 34.50 2.32
2824 2895 4.094294 ACGGAAATGTGTGAAATCGGTATG 59.906 41.667 0.00 0.00 0.00 2.39
2825 2896 4.258543 ACGGAAATGTGTGAAATCGGTAT 58.741 39.130 0.00 0.00 0.00 2.73
2845 2916 1.385743 GCGTTGCACTGTAGAAGTACG 59.614 52.381 0.00 0.00 40.03 3.67
2846 2917 2.408704 CAGCGTTGCACTGTAGAAGTAC 59.591 50.000 0.00 0.00 36.83 2.73
2952 3023 5.947228 TTCAAGCAACCTAACAAGATCTG 57.053 39.130 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.