Multiple sequence alignment - TraesCS7D01G242300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G242300 chr7D 100.000 4780 0 0 700 5479 206987579 206992358 0.000000e+00 8828.0
1 TraesCS7D01G242300 chr7D 100.000 246 0 0 1 246 206986880 206987125 6.470000e-124 455.0
2 TraesCS7D01G242300 chr7A 95.500 3667 124 23 1833 5479 219750937 219754582 0.000000e+00 5819.0
3 TraesCS7D01G242300 chr7A 96.109 1105 35 5 700 1796 219749833 219750937 0.000000e+00 1796.0
4 TraesCS7D01G242300 chr7A 95.181 249 7 4 1 246 219749109 219749355 6.660000e-104 388.0
5 TraesCS7D01G242300 chr7B 95.384 3553 118 20 1952 5479 194103628 194100097 0.000000e+00 5611.0
6 TraesCS7D01G242300 chr7B 94.417 1200 61 4 727 1923 194104820 194103624 0.000000e+00 1840.0
7 TraesCS7D01G242300 chr7B 98.374 246 4 0 1 246 194105523 194105278 3.030000e-117 433.0
8 TraesCS7D01G242300 chr2D 92.308 91 6 1 1906 1995 172409750 172409660 1.600000e-25 128.0
9 TraesCS7D01G242300 chr2A 92.308 91 6 1 1900 1989 177658319 177658409 1.600000e-25 128.0
10 TraesCS7D01G242300 chr3D 88.172 93 10 1 1906 1997 126949129 126949037 5.800000e-20 110.0
11 TraesCS7D01G242300 chr3B 88.172 93 10 1 1906 1997 181288894 181288802 5.800000e-20 110.0
12 TraesCS7D01G242300 chr3A 88.235 85 9 1 1906 1989 137579643 137579559 3.490000e-17 100.0
13 TraesCS7D01G242300 chr2B 93.846 65 4 0 1900 1964 225571271 225571335 1.260000e-16 99.0
14 TraesCS7D01G242300 chr2B 81.132 106 17 3 1893 1996 247368525 247368629 1.260000e-11 82.4
15 TraesCS7D01G242300 chr1A 89.706 68 4 3 1927 1992 40897459 40897393 3.520000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G242300 chr7D 206986880 206992358 5478 False 4641.500000 8828 100.000000 1 5479 2 chr7D.!!$F1 5478
1 TraesCS7D01G242300 chr7A 219749109 219754582 5473 False 2667.666667 5819 95.596667 1 5479 3 chr7A.!!$F1 5478
2 TraesCS7D01G242300 chr7B 194100097 194105523 5426 True 2628.000000 5611 96.058333 1 5479 3 chr7B.!!$R1 5478

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
840 867 1.374631 CTCGCAGCAGTACCAGCAA 60.375 57.895 10.16 0.0 0.0 3.91 F
1095 1125 1.196808 GCATCCGCGAGAACAAAGAAA 59.803 47.619 8.23 0.0 0.0 2.52 F
2562 2636 1.071605 CACTCGAGCCAACAAGTAGC 58.928 55.000 13.61 0.0 0.0 3.58 F
2806 2880 1.271379 CCCAATCCGAGGTTGTCAAGT 60.271 52.381 0.00 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2562 2636 1.247567 CTACTGTTTGTGGGCAAGGG 58.752 55.000 0.00 0.0 35.82 3.95 R
2731 2805 3.181526 GCAAGAGCATCAGACACGTTAAG 60.182 47.826 0.00 0.0 41.58 1.85 R
4422 4520 0.106708 AGCAACTCTGAAACAGCCGA 59.893 50.000 0.00 0.0 0.00 5.54 R
4556 4654 0.814457 ACAGTGCAACGCTGGAAAAA 59.186 45.000 12.35 0.0 45.11 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
840 867 1.374631 CTCGCAGCAGTACCAGCAA 60.375 57.895 10.16 0.00 0.00 3.91
984 1014 2.359107 TACCAGCAGCAGCAGCAC 60.359 61.111 12.92 0.00 45.49 4.40
1095 1125 1.196808 GCATCCGCGAGAACAAAGAAA 59.803 47.619 8.23 0.00 0.00 2.52
1192 1225 7.521748 CGGCTACTAGTGTGCTATGTATTAACT 60.522 40.741 17.95 0.00 0.00 2.24
1241 1274 4.967084 TTACACCACATGTTCTGGTAGT 57.033 40.909 6.18 9.26 40.25 2.73
1260 1293 9.103861 CTGGTAGTTCCTTTCTCAGATTTATTC 57.896 37.037 0.00 0.00 37.07 1.75
1263 1296 5.586643 AGTTCCTTTCTCAGATTTATTCGGC 59.413 40.000 0.00 0.00 0.00 5.54
1439 1472 4.280174 ACTGCAAGCAAATGATTTCTGAGT 59.720 37.500 0.00 0.00 37.60 3.41
1470 1503 2.616001 GGTTCATGCCAACCCGTACTAA 60.616 50.000 5.21 0.00 40.18 2.24
1657 1690 1.826385 ACCAGAGCTTTTATTGCGCT 58.174 45.000 9.73 0.00 41.00 5.92
1680 1713 4.766373 TCAAGAAATGGATTAGCAAGTGCA 59.234 37.500 6.00 0.00 45.16 4.57
1682 1715 3.445096 AGAAATGGATTAGCAAGTGCACC 59.555 43.478 14.63 0.00 45.16 5.01
1722 1757 9.362151 TGTAACTGTAAGGGATTTGAAAGAAAT 57.638 29.630 0.00 0.00 39.30 2.17
1789 1824 2.884639 GTGCGGGATGGCAATATTTAGT 59.115 45.455 0.00 0.00 45.93 2.24
1795 1830 5.641155 GGGATGGCAATATTTAGTAGGGTT 58.359 41.667 0.00 0.00 0.00 4.11
1796 1831 6.075315 GGGATGGCAATATTTAGTAGGGTTT 58.925 40.000 0.00 0.00 0.00 3.27
1797 1832 6.553476 GGGATGGCAATATTTAGTAGGGTTTT 59.447 38.462 0.00 0.00 0.00 2.43
1798 1833 7.433680 GGATGGCAATATTTAGTAGGGTTTTG 58.566 38.462 0.00 0.00 0.00 2.44
1799 1834 6.783708 TGGCAATATTTAGTAGGGTTTTGG 57.216 37.500 0.00 0.00 0.00 3.28
1800 1835 5.128008 TGGCAATATTTAGTAGGGTTTTGGC 59.872 40.000 0.00 0.00 38.45 4.52
1801 1836 5.362717 GGCAATATTTAGTAGGGTTTTGGCT 59.637 40.000 0.00 0.00 36.03 4.75
1802 1837 6.127168 GGCAATATTTAGTAGGGTTTTGGCTT 60.127 38.462 0.00 0.00 36.03 4.35
1803 1838 6.756542 GCAATATTTAGTAGGGTTTTGGCTTG 59.243 38.462 0.00 0.00 0.00 4.01
1804 1839 7.578763 GCAATATTTAGTAGGGTTTTGGCTTGT 60.579 37.037 0.00 0.00 0.00 3.16
1805 1840 8.311109 CAATATTTAGTAGGGTTTTGGCTTGTT 58.689 33.333 0.00 0.00 0.00 2.83
1806 1841 5.523438 TTTAGTAGGGTTTTGGCTTGTTG 57.477 39.130 0.00 0.00 0.00 3.33
1807 1842 1.686587 AGTAGGGTTTTGGCTTGTTGC 59.313 47.619 0.00 0.00 41.94 4.17
1918 1990 9.847224 AAAGGAAAACAAATACTCTCTCTGTAA 57.153 29.630 0.00 0.00 0.00 2.41
1919 1991 9.847224 AAGGAAAACAAATACTCTCTCTGTAAA 57.153 29.630 0.00 0.00 0.00 2.01
1939 2011 6.908284 TGTAAACTGATGTAAGACGTTTTTGC 59.092 34.615 0.00 0.00 0.00 3.68
1940 2012 5.493133 AACTGATGTAAGACGTTTTTGCA 57.507 34.783 0.00 1.87 0.00 4.08
1967 2039 6.286758 TCAAATTGAACTGCAAAAATGCCTA 58.713 32.000 0.00 0.00 40.48 3.93
2016 2090 2.082231 AGCACACATCAATCTGTCTGC 58.918 47.619 0.00 0.00 40.18 4.26
2071 2145 4.954826 GTGTACTTCCCCTATGACTACAGT 59.045 45.833 0.00 0.00 0.00 3.55
2074 2148 5.469210 ACTTCCCCTATGACTACAGTAGT 57.531 43.478 13.41 13.41 42.86 2.73
2562 2636 1.071605 CACTCGAGCCAACAAGTAGC 58.928 55.000 13.61 0.00 0.00 3.58
2731 2805 1.284715 GCTACAAACCAACCGCCAC 59.715 57.895 0.00 0.00 0.00 5.01
2806 2880 1.271379 CCCAATCCGAGGTTGTCAAGT 60.271 52.381 0.00 0.00 0.00 3.16
2823 2897 2.430332 CAAGTGTGTTTGGGACCACATT 59.570 45.455 0.00 0.00 34.10 2.71
2844 2918 7.965107 CACATTAAAAGCAACAATCTAGAGGTC 59.035 37.037 0.00 0.00 0.00 3.85
2891 2965 6.947644 TTGATGTGCTATACCGTTCTAGTA 57.052 37.500 0.00 0.00 0.00 1.82
2896 2970 6.967135 TGTGCTATACCGTTCTAGTATGAAG 58.033 40.000 0.00 0.00 32.71 3.02
3030 3104 9.330063 CATCTTTGGAAAGTACAAGCATATCTA 57.670 33.333 0.00 0.00 37.31 1.98
3075 3149 7.840342 ATTACTGTCTCACAAGAAAGCATAG 57.160 36.000 0.00 0.00 40.13 2.23
3114 3188 9.460906 CTTTAGGATGTTAGACGTAGAATTACC 57.539 37.037 0.00 0.00 0.00 2.85
3163 3237 8.095169 AGTAGACTTGGTAATTGTACTCCTTTG 58.905 37.037 0.00 0.00 0.00 2.77
3253 3327 1.988107 ACTGGAGTGGACATCATGGTT 59.012 47.619 0.00 0.00 0.00 3.67
3427 3511 9.508567 CTATTTATTTTAACTTGAAGAGCTGGC 57.491 33.333 0.00 0.00 0.00 4.85
3430 3514 2.928801 TAACTTGAAGAGCTGGCACA 57.071 45.000 0.00 0.00 0.00 4.57
3529 3619 5.240844 AGGTTGCTTTATACACAAGTTGGTC 59.759 40.000 7.96 0.00 0.00 4.02
3599 3690 5.129368 AGCATGTGGGGTCAATTAGTTAT 57.871 39.130 0.00 0.00 0.00 1.89
3767 3859 4.527816 TGGGAGTATTTTGCTGATTGCTTT 59.472 37.500 0.00 0.00 43.37 3.51
3769 3861 5.934043 GGGAGTATTTTGCTGATTGCTTTTT 59.066 36.000 0.00 0.00 43.37 1.94
3908 4000 3.350219 AACGATGTTGCCACCTAAGAT 57.650 42.857 0.00 0.00 0.00 2.40
3981 4073 2.328655 GCTCTCAGCTTGCAAACTTC 57.671 50.000 0.00 0.00 38.45 3.01
4034 4126 2.516930 CCCACCCGCCATGTGATC 60.517 66.667 0.00 0.00 35.74 2.92
4099 4195 1.443194 CAGTTCTGCATGTTGCCGC 60.443 57.895 0.00 0.00 44.23 6.53
4118 4214 4.304110 CCGCGTCTAGATTTAGGCATTAA 58.696 43.478 4.92 0.00 30.69 1.40
4120 4216 5.062308 CCGCGTCTAGATTTAGGCATTAATC 59.938 44.000 4.92 2.04 30.69 1.75
4160 4256 7.391148 AGGTAGGCATATTTTATATTTGGCG 57.609 36.000 0.00 0.00 37.87 5.69
4164 4260 7.480760 AGGCATATTTTATATTTGGCGGATT 57.519 32.000 0.00 0.00 37.87 3.01
4222 4318 4.534500 TGAGTTCCCTTACTTGCAAGGATA 59.466 41.667 29.18 11.76 46.94 2.59
4232 4328 8.562892 CCTTACTTGCAAGGATATATTCTTGTG 58.437 37.037 27.35 20.87 46.94 3.33
4268 4366 9.822185 GATAAAATTCCTTATGCAACCATCTTT 57.178 29.630 0.00 0.00 32.85 2.52
4305 4403 8.812972 TGGTACTCCTATGTAAATATAGGCTTG 58.187 37.037 7.68 4.27 46.12 4.01
4317 4415 9.486497 GTAAATATAGGCTTGTCTAAAGTACCC 57.514 37.037 0.00 0.00 0.00 3.69
4320 4418 3.190439 AGGCTTGTCTAAAGTACCCCAT 58.810 45.455 0.00 0.00 0.00 4.00
4325 4423 4.210724 TGTCTAAAGTACCCCATTTCCG 57.789 45.455 0.00 0.00 0.00 4.30
4326 4424 3.839490 TGTCTAAAGTACCCCATTTCCGA 59.161 43.478 0.00 0.00 0.00 4.55
4332 4430 1.947456 GTACCCCATTTCCGATCTTGC 59.053 52.381 0.00 0.00 0.00 4.01
4335 4433 2.241176 ACCCCATTTCCGATCTTGCTTA 59.759 45.455 0.00 0.00 0.00 3.09
4477 4575 5.947228 TTCAAGCAACCTAACAAGATCTG 57.053 39.130 0.00 0.00 0.00 2.90
4556 4654 2.654863 CCGATTGCCAGTCCCTATTTT 58.345 47.619 0.00 0.00 0.00 1.82
4583 4681 2.408704 CAGCGTTGCACTGTAGAAGTAC 59.591 50.000 0.00 0.00 36.83 2.73
4584 4682 1.385743 GCGTTGCACTGTAGAAGTACG 59.614 52.381 0.00 0.00 40.03 3.67
4604 4702 4.258543 ACGGAAATGTGTGAAATCGGTAT 58.741 39.130 0.00 0.00 0.00 2.73
4605 4703 4.094294 ACGGAAATGTGTGAAATCGGTATG 59.906 41.667 0.00 0.00 0.00 2.39
4675 4773 8.918961 TTCGTTCTGTTTCATTTAACACAAAT 57.081 26.923 0.00 0.00 34.50 2.32
4706 4804 8.347771 TCGTTTGCTTATATCTAATACGAGTGT 58.652 33.333 0.00 0.00 32.53 3.55
4717 4815 5.877012 TCTAATACGAGTGTCTAACTTCGGT 59.123 40.000 0.00 0.00 40.07 4.69
4729 4827 5.122396 GTCTAACTTCGGTTGCAGATGAAAT 59.878 40.000 0.00 0.00 38.76 2.17
4883 4981 6.719370 ACAGTAGCAATGAAAAGGAATGGTAA 59.281 34.615 0.00 0.00 0.00 2.85
5159 5262 8.647796 TGTGTCTCCGGTTATTCTTATATTCAT 58.352 33.333 0.00 0.00 0.00 2.57
5192 5295 3.685139 TCCTTTTTGCAACCAACAACA 57.315 38.095 0.00 0.00 0.00 3.33
5205 5308 5.751243 ACCAACAACAACTACTTTGCTAG 57.249 39.130 0.00 0.00 39.01 3.42
5249 5353 1.337703 GTCATTGTGCTTGCTGACCAA 59.662 47.619 2.55 0.00 33.51 3.67
5252 5356 3.069872 TCATTGTGCTTGCTGACCAATTT 59.930 39.130 0.00 0.00 31.91 1.82
5256 5360 3.004629 TGTGCTTGCTGACCAATTTACAG 59.995 43.478 0.00 0.00 31.91 2.74
5321 5425 2.971598 GCCTTGCTGCCCCTAGTGA 61.972 63.158 0.00 0.00 0.00 3.41
5327 5431 1.132500 GCTGCCCCTAGTGAACCTAT 58.868 55.000 0.00 0.00 0.00 2.57
5379 5483 0.034186 GACCACCAGGCCAATGATGA 60.034 55.000 5.01 0.00 39.06 2.92
5472 5579 0.829990 TACCGCATCCAGATTCTGCA 59.170 50.000 8.23 0.00 35.64 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 2.562876 GGGGCCGCGGTTTTGTTTA 61.563 57.895 28.70 0.00 0.00 2.01
840 867 3.779850 CTGCTGCTGGTGGTGGTGT 62.780 63.158 0.00 0.00 0.00 4.16
984 1014 2.044555 CATCTGCTGCTGGTGGTGG 61.045 63.158 11.50 0.00 0.00 4.61
1077 1107 3.040147 TCTTTCTTTGTTCTCGCGGAT 57.960 42.857 6.13 0.00 0.00 4.18
1078 1108 2.519377 TCTTTCTTTGTTCTCGCGGA 57.481 45.000 6.13 0.00 0.00 5.54
1086 1116 7.196331 CGAAGAATCACCTTTCTTTCTTTGTT 58.804 34.615 1.39 0.00 44.04 2.83
1087 1117 6.729187 CGAAGAATCACCTTTCTTTCTTTGT 58.271 36.000 1.39 0.00 44.04 2.83
1089 1119 5.299279 TGCGAAGAATCACCTTTCTTTCTTT 59.701 36.000 1.39 0.00 44.04 2.52
1095 1125 3.054802 AGGATGCGAAGAATCACCTTTCT 60.055 43.478 0.00 0.00 37.56 2.52
1192 1225 1.269102 GGAGCATAGCTTCGCGTAGAA 60.269 52.381 17.53 3.80 39.88 2.10
1241 1274 4.570772 CGCCGAATAAATCTGAGAAAGGAA 59.429 41.667 0.00 0.00 0.00 3.36
1260 1293 4.135153 CCCAGACTCAGTCCGCCG 62.135 72.222 0.00 0.00 32.18 6.46
1263 1296 1.471676 GCATAACCCAGACTCAGTCCG 60.472 57.143 0.00 0.00 32.18 4.79
1304 1337 5.643348 TGAACAAGGATATCATGTGACACAC 59.357 40.000 11.22 1.42 34.56 3.82
1439 1472 1.702401 TGGCATGAACCTACTGAACCA 59.298 47.619 0.00 0.00 0.00 3.67
1657 1690 4.766373 TGCACTTGCTAATCCATTTCTTGA 59.234 37.500 2.33 0.00 42.66 3.02
1680 1713 7.849322 ACAGTTACAGAAAAATAAATGGGGT 57.151 32.000 0.00 0.00 32.15 4.95
1682 1715 9.855021 CCTTACAGTTACAGAAAAATAAATGGG 57.145 33.333 0.00 0.00 32.15 4.00
1722 1757 8.836413 CAAAGTCAAGTAAACAGACATTAAGGA 58.164 33.333 0.00 0.00 34.80 3.36
1751 1786 4.155099 CCCGCACACAAATGTAATCAGTTA 59.845 41.667 0.00 0.00 36.72 2.24
1848 1920 5.562696 CGCTGCCTCTTCATTTAGTGAAAAA 60.563 40.000 0.00 0.00 45.74 1.94
1910 1982 6.570672 ACGTCTTACATCAGTTTACAGAGA 57.429 37.500 0.00 0.00 0.00 3.10
1911 1983 7.639162 AAACGTCTTACATCAGTTTACAGAG 57.361 36.000 0.00 0.00 33.84 3.35
1918 1990 5.065988 ACTGCAAAAACGTCTTACATCAGTT 59.934 36.000 0.00 0.00 0.00 3.16
1919 1991 4.574828 ACTGCAAAAACGTCTTACATCAGT 59.425 37.500 0.00 0.00 0.00 3.41
2016 2090 7.843490 TTTTACTCAGGAATATTCTTCCACG 57.157 36.000 14.95 0.00 41.00 4.94
2562 2636 1.247567 CTACTGTTTGTGGGCAAGGG 58.752 55.000 0.00 0.00 35.82 3.95
2731 2805 3.181526 GCAAGAGCATCAGACACGTTAAG 60.182 47.826 0.00 0.00 41.58 1.85
2823 2897 6.650807 CACTGACCTCTAGATTGTTGCTTTTA 59.349 38.462 0.00 0.00 0.00 1.52
2891 2965 4.785346 AATATCACCCAGAGCACTTCAT 57.215 40.909 0.00 0.00 0.00 2.57
2896 2970 5.648092 ACAAGTTTAATATCACCCAGAGCAC 59.352 40.000 0.00 0.00 0.00 4.40
3057 3131 7.171678 ACACTTAACTATGCTTTCTTGTGAGAC 59.828 37.037 0.00 0.00 0.00 3.36
3114 3188 6.774656 ACTTAAATATGCTTCCTTGGGAGATG 59.225 38.462 0.00 0.00 31.21 2.90
3163 3237 5.303971 AGCATTTATCCAGAGCATACAGAC 58.696 41.667 0.00 0.00 0.00 3.51
3222 3296 1.800586 CCACTCCAGTCAACACAATCG 59.199 52.381 0.00 0.00 0.00 3.34
3557 3647 4.164294 GCTTTGCTTATGCTTCACTCTTG 58.836 43.478 1.96 0.00 40.48 3.02
3599 3690 4.080072 TCCAGAACAACCACCATATGCATA 60.080 41.667 9.27 9.27 0.00 3.14
4034 4126 6.698766 CCTGATCAACAAAAAGAACAAGGAAG 59.301 38.462 0.00 0.00 0.00 3.46
4099 4195 7.359598 GCACTGATTAATGCCTAAATCTAGACG 60.360 40.741 0.00 0.00 35.73 4.18
4118 4214 4.576330 ACCTAAAAAGCCTAGCACTGAT 57.424 40.909 0.00 0.00 0.00 2.90
4120 4216 4.192317 CCTACCTAAAAAGCCTAGCACTG 58.808 47.826 0.00 0.00 0.00 3.66
4160 4256 6.465084 GGAATATACAGTCTACCACCAATCC 58.535 44.000 0.00 0.00 0.00 3.01
4164 4260 5.103215 AGAGGGAATATACAGTCTACCACCA 60.103 44.000 0.00 0.00 0.00 4.17
4232 4328 7.433425 GCATAAGGAATTTTATCTTGTCTGCAC 59.567 37.037 0.00 0.00 0.00 4.57
4249 4347 5.324409 ACAGAAAGATGGTTGCATAAGGAA 58.676 37.500 0.00 0.00 0.00 3.36
4268 4366 6.491383 ACATAGGAGTACCAAGTAGAACAGA 58.509 40.000 0.00 0.00 38.94 3.41
4305 4403 4.476628 TCGGAAATGGGGTACTTTAGAC 57.523 45.455 0.00 0.00 0.00 2.59
4317 4415 6.332630 ACAAAATAAGCAAGATCGGAAATGG 58.667 36.000 0.00 0.00 0.00 3.16
4320 4418 5.633182 GCAACAAAATAAGCAAGATCGGAAA 59.367 36.000 0.00 0.00 0.00 3.13
4325 4423 5.713025 TCCTGCAACAAAATAAGCAAGATC 58.287 37.500 0.00 0.00 36.44 2.75
4326 4424 5.726980 TCCTGCAACAAAATAAGCAAGAT 57.273 34.783 0.00 0.00 36.44 2.40
4332 4430 6.211587 TGATGGATCCTGCAACAAAATAAG 57.788 37.500 14.23 0.00 0.00 1.73
4335 4433 5.486735 TTTGATGGATCCTGCAACAAAAT 57.513 34.783 14.23 0.00 37.48 1.82
4422 4520 0.106708 AGCAACTCTGAAACAGCCGA 59.893 50.000 0.00 0.00 0.00 5.54
4477 4575 5.395435 GGAGGGAGTCAATAACTAACCAGTC 60.395 48.000 0.00 0.00 38.74 3.51
4556 4654 0.814457 ACAGTGCAACGCTGGAAAAA 59.186 45.000 12.35 0.00 45.11 1.94
4583 4681 4.331443 TCATACCGATTTCACACATTTCCG 59.669 41.667 0.00 0.00 0.00 4.30
4584 4682 5.220854 CCTCATACCGATTTCACACATTTCC 60.221 44.000 0.00 0.00 0.00 3.13
4675 4773 8.748582 CGTATTAGATATAAGCAAACGAACACA 58.251 33.333 0.00 0.00 0.00 3.72
4681 4779 8.503486 ACACTCGTATTAGATATAAGCAAACG 57.497 34.615 0.00 0.00 0.00 3.60
4706 4804 3.953712 TCATCTGCAACCGAAGTTAGA 57.046 42.857 0.00 0.00 33.27 2.10
4714 4812 1.541147 ACCACATTTCATCTGCAACCG 59.459 47.619 0.00 0.00 0.00 4.44
4717 4815 2.964464 ACCAACCACATTTCATCTGCAA 59.036 40.909 0.00 0.00 0.00 4.08
4729 4827 2.039746 CCAGGATGTTAGACCAACCACA 59.960 50.000 0.00 0.00 36.20 4.17
4883 4981 7.341805 AGACCAAACTAGACAATATGCAGAAT 58.658 34.615 0.00 0.00 0.00 2.40
5218 5321 4.650972 AGCACAATGACTTTACCCCTTA 57.349 40.909 0.00 0.00 0.00 2.69
5249 5353 7.504403 CACAGATACCAGAATCTCCTGTAAAT 58.496 38.462 0.00 0.00 33.87 1.40
5252 5356 4.342378 GCACAGATACCAGAATCTCCTGTA 59.658 45.833 0.00 0.00 33.87 2.74
5256 5360 3.827008 TGCACAGATACCAGAATCTCC 57.173 47.619 0.00 0.00 33.87 3.71
5287 5391 0.323178 AGGCCAGGTTGATGCTTCAG 60.323 55.000 5.01 0.00 32.27 3.02
5292 5396 1.980772 AGCAAGGCCAGGTTGATGC 60.981 57.895 5.01 3.59 0.00 3.91
5318 5422 7.753580 GCCATGTTTAACAACTTATAGGTTCAC 59.246 37.037 0.66 0.00 33.58 3.18
5321 5425 6.431852 ACGCCATGTTTAACAACTTATAGGTT 59.568 34.615 0.66 0.00 33.58 3.50
5327 5431 6.482641 TGTTCTACGCCATGTTTAACAACTTA 59.517 34.615 0.66 0.00 33.58 2.24
5379 5483 5.532406 AGAGAAGCAACATAATTGTGTGTGT 59.468 36.000 8.74 0.00 35.83 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.