Multiple sequence alignment - TraesCS7D01G241400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G241400 chr7D 100.000 3768 0 0 1 3768 205727668 205731435 0.000000e+00 6959.0
1 TraesCS7D01G241400 chr7D 83.607 427 66 2 197 620 37539862 37539437 7.580000e-107 398.0
2 TraesCS7D01G241400 chr7D 83.571 140 20 3 2 139 108989995 108989857 1.100000e-25 128.0
3 TraesCS7D01G241400 chr7D 89.583 96 9 1 2981 3075 205730549 205730644 1.840000e-23 121.0
4 TraesCS7D01G241400 chr7D 89.583 96 9 1 2882 2977 205730648 205730742 1.840000e-23 121.0
5 TraesCS7D01G241400 chr7D 95.652 46 0 2 3204 3249 205730761 205730804 5.220000e-09 73.1
6 TraesCS7D01G241400 chr7D 95.652 46 0 2 3094 3137 205730871 205730916 5.220000e-09 73.1
7 TraesCS7D01G241400 chr7A 93.602 2110 113 12 1680 3768 218233305 218235413 0.000000e+00 3129.0
8 TraesCS7D01G241400 chr7A 90.792 619 45 7 973 1587 218232595 218233205 0.000000e+00 817.0
9 TraesCS7D01G241400 chr7A 94.898 196 9 1 750 944 218232344 218232539 4.730000e-79 305.0
10 TraesCS7D01G241400 chr7A 91.667 96 8 0 2882 2977 218234618 218234713 2.360000e-27 134.0
11 TraesCS7D01G241400 chr7A 89.583 96 9 1 2981 3075 218234519 218234614 1.840000e-23 121.0
12 TraesCS7D01G241400 chr7A 74.516 310 61 17 3303 3605 223474756 223474458 6.610000e-23 119.0
13 TraesCS7D01G241400 chr7B 93.018 1375 76 7 1784 3142 196390825 196389455 0.000000e+00 1989.0
14 TraesCS7D01G241400 chr7B 93.165 790 35 8 942 1730 196391696 196390925 0.000000e+00 1142.0
15 TraesCS7D01G241400 chr7B 92.812 626 26 5 3144 3768 196388018 196387411 0.000000e+00 889.0
16 TraesCS7D01G241400 chr7B 96.133 181 7 0 764 944 196391903 196391723 2.850000e-76 296.0
17 TraesCS7D01G241400 chr7B 89.899 99 9 1 2882 2980 196389615 196389518 3.950000e-25 126.0
18 TraesCS7D01G241400 chr7B 93.878 49 1 2 3094 3140 196387969 196387921 5.220000e-09 73.1
19 TraesCS7D01G241400 chr3D 86.290 496 55 6 137 620 116337217 116336723 9.270000e-146 527.0
20 TraesCS7D01G241400 chr3D 82.658 444 73 2 177 617 25280680 25281122 1.270000e-104 390.0
21 TraesCS7D01G241400 chr3D 81.333 450 72 8 179 620 441582157 441581712 4.630000e-94 355.0
22 TraesCS7D01G241400 chr3D 93.284 134 8 1 1 133 116337411 116337278 2.970000e-46 196.0
23 TraesCS7D01G241400 chr5B 84.910 444 61 3 179 619 281251141 281250701 9.600000e-121 444.0
24 TraesCS7D01G241400 chr1A 80.372 591 86 20 2407 2979 575385255 575385833 4.500000e-114 422.0
25 TraesCS7D01G241400 chr1D 84.116 447 53 7 177 620 63606460 63606029 2.090000e-112 416.0
26 TraesCS7D01G241400 chr1D 88.701 177 15 4 2407 2579 479103893 479104068 1.060000e-50 211.0
27 TraesCS7D01G241400 chr1D 78.529 340 58 8 2646 2979 479104226 479104556 3.810000e-50 209.0
28 TraesCS7D01G241400 chr2B 85.237 359 53 0 177 535 619399322 619398964 1.650000e-98 370.0
29 TraesCS7D01G241400 chr5D 81.556 450 79 3 171 619 543769312 543769758 5.950000e-98 368.0
30 TraesCS7D01G241400 chr1B 83.333 408 52 8 137 532 495959670 495960073 2.770000e-96 363.0
31 TraesCS7D01G241400 chr4D 80.889 450 83 3 171 619 421888897 421889344 5.990000e-93 351.0
32 TraesCS7D01G241400 chr4D 80.605 397 61 8 3239 3622 366286540 366286147 3.680000e-75 292.0
33 TraesCS7D01G241400 chr4D 87.903 124 14 1 16 138 478034800 478034923 1.090000e-30 145.0
34 TraesCS7D01G241400 chr4D 85.612 139 16 4 2 139 470200241 470200376 3.920000e-30 143.0
35 TraesCS7D01G241400 chr4B 80.653 398 59 10 3239 3622 450869668 450869275 3.680000e-75 292.0
36 TraesCS7D01G241400 chr5A 78.673 422 64 17 3238 3644 25841974 25841564 1.340000e-64 257.0
37 TraesCS7D01G241400 chr5A 93.571 140 8 1 1 139 407932443 407932304 1.370000e-49 207.0
38 TraesCS7D01G241400 chr5A 85.827 127 14 4 16 139 588751265 588751390 8.490000e-27 132.0
39 TraesCS7D01G241400 chr5A 73.580 352 63 21 3239 3568 159524055 159524398 1.430000e-19 108.0
40 TraesCS7D01G241400 chr4A 82.895 304 32 10 3239 3531 405428834 405429128 4.830000e-64 255.0
41 TraesCS7D01G241400 chr4A 91.406 128 10 1 13 139 485290225 485290352 1.390000e-39 174.0
42 TraesCS7D01G241400 chr3B 79.381 388 61 13 3248 3622 389095291 389095672 4.830000e-64 255.0
43 TraesCS7D01G241400 chr3B 90.323 124 9 3 16 137 573365296 573365418 3.900000e-35 159.0
44 TraesCS7D01G241400 chr3B 87.234 47 5 1 3539 3584 488517940 488517894 7.000000e-03 52.8
45 TraesCS7D01G241400 chr2D 83.448 145 17 6 1 139 492298401 492298544 1.100000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G241400 chr7D 205727668 205731435 3767 False 1469.440000 6959 94.094000 1 3768 5 chr7D.!!$F1 3767
1 TraesCS7D01G241400 chr7A 218232344 218235413 3069 False 901.200000 3129 92.108400 750 3768 5 chr7A.!!$F1 3018
2 TraesCS7D01G241400 chr7B 196387411 196391903 4492 True 752.516667 1989 93.150833 764 3768 6 chr7B.!!$R1 3004
3 TraesCS7D01G241400 chr3D 116336723 116337411 688 True 361.500000 527 89.787000 1 620 2 chr3D.!!$R2 619
4 TraesCS7D01G241400 chr1A 575385255 575385833 578 False 422.000000 422 80.372000 2407 2979 1 chr1A.!!$F1 572
5 TraesCS7D01G241400 chr1D 479103893 479104556 663 False 210.000000 211 83.615000 2407 2979 2 chr1D.!!$F1 572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
662 732 0.037697 TTTGTGAGCGTGGATAGCGT 60.038 50.0 0.0 0.0 40.04 5.07 F
1737 1889 0.606604 GACGGGCTTTCTGTACCTCA 59.393 55.0 0.0 0.0 34.56 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1907 2130 0.114954 ACATGGGTGCATTTGGAGGT 59.885 50.0 0.0 0.0 0.00 3.85 R
3589 5386 1.002857 CCCCAAGAGGAAGGGTGAAT 58.997 55.0 0.0 0.0 43.89 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.685467 GGCCGAACGTTTCCCCGA 62.685 66.667 0.46 0.00 0.00 5.14
43 44 1.595357 GTTTCCCCGACGATGGAGT 59.405 57.895 0.00 0.00 30.91 3.85
145 204 2.514592 ATGCGGGTGCCAAGATCG 60.515 61.111 0.00 0.00 41.78 3.69
168 227 3.381983 ATCAGGTCGTCGCTGCCA 61.382 61.111 0.00 0.00 0.00 4.92
169 228 2.942796 ATCAGGTCGTCGCTGCCAA 61.943 57.895 0.00 0.00 0.00 4.52
171 230 2.357517 AGGTCGTCGCTGCCAAAG 60.358 61.111 0.00 0.00 0.00 2.77
181 240 4.927782 TGCCAAAGCACGCGAGGT 62.928 61.111 15.93 8.15 46.52 3.85
183 242 2.106683 GCCAAAGCACGCGAGGTAT 61.107 57.895 15.93 0.00 39.53 2.73
223 293 0.172803 GTGGACGGCATACTTCGACT 59.827 55.000 0.00 0.00 0.00 4.18
226 296 1.472276 GACGGCATACTTCGACTGCG 61.472 60.000 0.00 0.00 36.76 5.18
245 315 3.041940 CCACTCCGACCAACACGC 61.042 66.667 0.00 0.00 0.00 5.34
291 361 1.303888 ACGCTACAACTCCGAGGGA 60.304 57.895 0.00 0.00 0.00 4.20
292 362 0.683504 ACGCTACAACTCCGAGGGAT 60.684 55.000 0.00 0.00 0.00 3.85
308 378 2.044053 ATGGCGTCAATGGTGGGG 60.044 61.111 0.00 0.00 0.00 4.96
383 453 2.109181 GCTGATGGAGTACCCGGC 59.891 66.667 0.00 0.00 37.93 6.13
400 470 3.157949 CGGGCCCCTCCTTCTCTC 61.158 72.222 18.66 0.00 34.39 3.20
405 475 2.756283 CCCTCCTTCTCTCGCCGT 60.756 66.667 0.00 0.00 0.00 5.68
406 476 2.776913 CCCTCCTTCTCTCGCCGTC 61.777 68.421 0.00 0.00 0.00 4.79
440 510 2.423446 GCCGAGGCGAATGGAGAT 59.577 61.111 0.00 0.00 0.00 2.75
444 514 1.958205 GAGGCGAATGGAGATGGCG 60.958 63.158 0.00 0.00 0.00 5.69
503 573 2.264120 GAGCTCCTCCCCTTCAAGCC 62.264 65.000 0.87 0.00 33.43 4.35
508 578 1.990060 CTCCCCTTCAAGCCGGAGA 60.990 63.158 5.05 0.00 43.96 3.71
588 658 1.758906 CGTCCCTTCTCCTCCCTCC 60.759 68.421 0.00 0.00 0.00 4.30
590 660 0.043485 GTCCCTTCTCCTCCCTCCTT 59.957 60.000 0.00 0.00 0.00 3.36
591 661 0.340208 TCCCTTCTCCTCCCTCCTTC 59.660 60.000 0.00 0.00 0.00 3.46
592 662 0.341609 CCCTTCTCCTCCCTCCTTCT 59.658 60.000 0.00 0.00 0.00 2.85
597 667 0.620121 CTCCTCCCTCCTTCTGCCTT 60.620 60.000 0.00 0.00 0.00 4.35
605 675 0.767375 TCCTTCTGCCTTGTCAAGCT 59.233 50.000 7.09 0.00 0.00 3.74
634 704 3.691342 CGGAGGAACGGGAGCACA 61.691 66.667 0.00 0.00 0.00 4.57
635 705 2.990479 GGAGGAACGGGAGCACAT 59.010 61.111 0.00 0.00 0.00 3.21
636 706 1.672854 CGGAGGAACGGGAGCACATA 61.673 60.000 0.00 0.00 0.00 2.29
637 707 0.759346 GGAGGAACGGGAGCACATAT 59.241 55.000 0.00 0.00 0.00 1.78
638 708 1.141053 GGAGGAACGGGAGCACATATT 59.859 52.381 0.00 0.00 0.00 1.28
639 709 2.421529 GGAGGAACGGGAGCACATATTT 60.422 50.000 0.00 0.00 0.00 1.40
640 710 3.279434 GAGGAACGGGAGCACATATTTT 58.721 45.455 0.00 0.00 0.00 1.82
641 711 3.694566 GAGGAACGGGAGCACATATTTTT 59.305 43.478 0.00 0.00 0.00 1.94
661 731 1.075542 TTTTGTGAGCGTGGATAGCG 58.924 50.000 0.00 0.00 40.04 4.26
662 732 0.037697 TTTGTGAGCGTGGATAGCGT 60.038 50.000 0.00 0.00 40.04 5.07
663 733 0.735978 TTGTGAGCGTGGATAGCGTG 60.736 55.000 0.00 0.00 40.04 5.34
664 734 1.138883 GTGAGCGTGGATAGCGTGA 59.861 57.895 0.00 0.00 40.04 4.35
665 735 1.138883 TGAGCGTGGATAGCGTGAC 59.861 57.895 0.00 0.00 40.04 3.67
666 736 1.138883 GAGCGTGGATAGCGTGACA 59.861 57.895 0.00 0.00 40.04 3.58
667 737 1.140407 GAGCGTGGATAGCGTGACAC 61.140 60.000 0.00 0.00 40.04 3.67
668 738 1.445410 GCGTGGATAGCGTGACACA 60.445 57.895 6.37 0.00 33.62 3.72
669 739 0.806102 GCGTGGATAGCGTGACACAT 60.806 55.000 6.37 0.00 33.62 3.21
670 740 1.640428 CGTGGATAGCGTGACACATT 58.360 50.000 6.37 0.00 33.62 2.71
671 741 1.999735 CGTGGATAGCGTGACACATTT 59.000 47.619 6.37 0.00 33.62 2.32
672 742 2.415168 CGTGGATAGCGTGACACATTTT 59.585 45.455 6.37 0.00 33.62 1.82
673 743 3.120338 CGTGGATAGCGTGACACATTTTT 60.120 43.478 6.37 0.00 33.62 1.94
697 767 4.742438 TTTTTGTTGAGGATAGCGTGAC 57.258 40.909 0.00 0.00 0.00 3.67
698 768 3.394674 TTTGTTGAGGATAGCGTGACA 57.605 42.857 0.00 0.00 0.00 3.58
699 769 2.363788 TGTTGAGGATAGCGTGACAC 57.636 50.000 0.00 0.00 0.00 3.67
700 770 1.616374 TGTTGAGGATAGCGTGACACA 59.384 47.619 6.37 0.00 0.00 3.72
701 771 2.233676 TGTTGAGGATAGCGTGACACAT 59.766 45.455 6.37 0.00 0.00 3.21
702 772 3.445805 TGTTGAGGATAGCGTGACACATA 59.554 43.478 6.37 0.00 0.00 2.29
703 773 4.081917 TGTTGAGGATAGCGTGACACATAA 60.082 41.667 6.37 0.00 0.00 1.90
704 774 4.729227 TGAGGATAGCGTGACACATAAA 57.271 40.909 6.37 0.00 0.00 1.40
705 775 4.430007 TGAGGATAGCGTGACACATAAAC 58.570 43.478 6.37 0.00 0.00 2.01
706 776 4.081917 TGAGGATAGCGTGACACATAAACA 60.082 41.667 6.37 0.00 0.00 2.83
707 777 5.023533 AGGATAGCGTGACACATAAACAT 57.976 39.130 6.37 0.00 0.00 2.71
708 778 5.428253 AGGATAGCGTGACACATAAACATT 58.572 37.500 6.37 0.00 0.00 2.71
709 779 6.578944 AGGATAGCGTGACACATAAACATTA 58.421 36.000 6.37 0.00 0.00 1.90
710 780 6.479001 AGGATAGCGTGACACATAAACATTAC 59.521 38.462 6.37 0.00 0.00 1.89
711 781 4.577687 AGCGTGACACATAAACATTACG 57.422 40.909 6.37 0.00 0.00 3.18
712 782 3.369756 AGCGTGACACATAAACATTACGG 59.630 43.478 6.37 0.00 0.00 4.02
713 783 3.123959 GCGTGACACATAAACATTACGGT 59.876 43.478 6.37 0.00 0.00 4.83
714 784 4.377635 GCGTGACACATAAACATTACGGTT 60.378 41.667 6.37 0.00 0.00 4.44
715 785 5.681880 CGTGACACATAAACATTACGGTTT 58.318 37.500 6.37 0.00 43.08 3.27
716 786 6.137415 CGTGACACATAAACATTACGGTTTT 58.863 36.000 6.37 0.00 41.07 2.43
717 787 6.633634 CGTGACACATAAACATTACGGTTTTT 59.366 34.615 6.37 0.00 41.07 1.94
718 788 7.356881 CGTGACACATAAACATTACGGTTTTTG 60.357 37.037 6.37 0.00 42.01 2.44
719 789 7.432838 GTGACACATAAACATTACGGTTTTTGT 59.567 33.333 0.00 8.40 46.55 2.83
720 790 8.618677 TGACACATAAACATTACGGTTTTTGTA 58.381 29.630 12.24 0.00 45.04 2.41
721 791 9.109533 GACACATAAACATTACGGTTTTTGTAG 57.890 33.333 12.24 10.14 45.04 2.74
722 792 7.592164 ACACATAAACATTACGGTTTTTGTAGC 59.408 33.333 12.24 0.00 45.04 3.58
723 793 7.591795 CACATAAACATTACGGTTTTTGTAGCA 59.408 33.333 12.24 0.00 45.04 3.49
724 794 8.136165 ACATAAACATTACGGTTTTTGTAGCAA 58.864 29.630 11.35 0.00 45.00 3.91
725 795 6.815672 AAACATTACGGTTTTTGTAGCAAC 57.184 33.333 0.00 0.00 37.72 4.17
726 796 5.502153 ACATTACGGTTTTTGTAGCAACA 57.498 34.783 0.00 0.00 0.00 3.33
727 797 5.275494 ACATTACGGTTTTTGTAGCAACAC 58.725 37.500 0.00 0.00 34.61 3.32
728 798 4.959596 TTACGGTTTTTGTAGCAACACA 57.040 36.364 0.00 0.00 34.61 3.72
729 799 5.502153 TTACGGTTTTTGTAGCAACACAT 57.498 34.783 0.00 0.00 34.61 3.21
730 800 6.615264 TTACGGTTTTTGTAGCAACACATA 57.385 33.333 0.00 0.00 34.61 2.29
731 801 5.502153 ACGGTTTTTGTAGCAACACATAA 57.498 34.783 0.00 0.00 34.61 1.90
732 802 5.892568 ACGGTTTTTGTAGCAACACATAAA 58.107 33.333 0.00 0.00 34.61 1.40
733 803 5.744819 ACGGTTTTTGTAGCAACACATAAAC 59.255 36.000 16.49 16.49 43.61 2.01
734 804 5.108555 CGGTTTTTGTAGCAACACATAAACG 60.109 40.000 17.37 11.72 44.45 3.60
735 805 5.744819 GGTTTTTGTAGCAACACATAAACGT 59.255 36.000 17.37 0.00 44.45 3.99
736 806 6.253942 GGTTTTTGTAGCAACACATAAACGTT 59.746 34.615 17.37 0.00 44.45 3.99
737 807 7.431668 GGTTTTTGTAGCAACACATAAACGTTA 59.568 33.333 0.00 0.00 44.45 3.18
738 808 7.895582 TTTTGTAGCAACACATAAACGTTAC 57.104 32.000 0.00 0.00 34.61 2.50
739 809 5.253334 TGTAGCAACACATAAACGTTACG 57.747 39.130 0.00 2.19 0.00 3.18
740 810 4.744137 TGTAGCAACACATAAACGTTACGT 59.256 37.500 3.95 3.95 43.97 3.57
741 811 6.238049 TTGTAGCAACACATAAACGTTACGTT 60.238 34.615 17.82 17.82 43.14 3.99
754 824 3.996363 ACGTTACGTTTGGGGAATCTTAC 59.004 43.478 3.95 0.00 36.35 2.34
757 827 5.220529 CGTTACGTTTGGGGAATCTTACATC 60.221 44.000 0.00 0.00 0.00 3.06
758 828 3.617284 ACGTTTGGGGAATCTTACATCC 58.383 45.455 0.00 0.00 34.85 3.51
810 880 5.824904 AAAATTATGCTAGGCTCAGTGTG 57.175 39.130 0.00 0.00 0.00 3.82
926 997 1.153628 CCGGTGCTAGGGTTCTTCG 60.154 63.158 0.00 0.00 0.00 3.79
952 1062 3.231818 CACCTTCATACCTCCGGATACT 58.768 50.000 3.57 0.00 0.00 2.12
966 1076 2.428890 CGGATACTCACCTTCTCTTGCT 59.571 50.000 0.00 0.00 0.00 3.91
1073 1183 1.077787 CCGCCCTGAACCAGCATAA 60.078 57.895 0.00 0.00 0.00 1.90
1239 1349 1.000486 CGGGGTGAGGAGGAAGAGA 60.000 63.158 0.00 0.00 0.00 3.10
1263 1373 2.418356 GTGTTCGTGTCCGGTGGA 59.582 61.111 0.00 0.00 33.95 4.02
1338 1448 2.661866 GTGGTTGCGCTCGTCACT 60.662 61.111 9.73 0.00 0.00 3.41
1362 1472 2.029838 AGCCAGGTGACGATGAATTC 57.970 50.000 0.00 0.00 0.00 2.17
1367 1477 3.273434 CAGGTGACGATGAATTCCATGT 58.727 45.455 2.27 0.00 35.17 3.21
1534 1646 2.028020 GGGGTCTCGACAGATGAACTTT 60.028 50.000 0.00 0.00 0.00 2.66
1583 1697 3.870274 TCTCATCTCAGGCTGTGATTTG 58.130 45.455 25.08 20.02 33.51 2.32
1590 1704 3.603532 TCAGGCTGTGATTTGTCATCTC 58.396 45.455 15.27 0.00 0.00 2.75
1651 1803 6.538263 AGTCAGATAGCCTCAAAAGAACTTT 58.462 36.000 0.00 0.00 0.00 2.66
1653 1805 7.503902 AGTCAGATAGCCTCAAAAGAACTTTTT 59.496 33.333 9.42 0.00 40.45 1.94
1716 1868 7.161404 TGCATACATTTCTAACTTCTGACTGT 58.839 34.615 0.00 0.00 0.00 3.55
1721 1873 3.917329 TCTAACTTCTGACTGTGGACG 57.083 47.619 0.00 0.00 0.00 4.79
1737 1889 0.606604 GACGGGCTTTCTGTACCTCA 59.393 55.000 0.00 0.00 34.56 3.86
1744 1896 4.381411 GGCTTTCTGTACCTCACATATCC 58.619 47.826 0.00 0.00 36.29 2.59
1808 2021 7.751047 TTACATAGAAACTTACAGATGCGAC 57.249 36.000 0.00 0.00 0.00 5.19
1833 2046 4.641094 TGTTACTGTCTTCTAGGCTCTAGC 59.359 45.833 0.00 0.00 41.14 3.42
1836 2049 3.287222 CTGTCTTCTAGGCTCTAGCTGT 58.713 50.000 0.00 0.00 41.70 4.40
1863 2076 4.828291 CTTGTGTTCACAAGTTTTGCTG 57.172 40.909 27.38 9.24 41.43 4.41
1864 2077 3.932545 TGTGTTCACAAGTTTTGCTGT 57.067 38.095 2.99 0.00 0.00 4.40
1865 2078 3.573598 TGTGTTCACAAGTTTTGCTGTG 58.426 40.909 2.99 0.00 0.00 3.66
1951 2174 1.035139 AGCTTGCCCTTTCAAGTGTG 58.965 50.000 5.55 0.00 43.92 3.82
1958 2182 4.724399 TGCCCTTTCAAGTGTGAAGATTA 58.276 39.130 0.00 0.00 44.49 1.75
2000 2224 7.678947 AGAATGTATTAGCTCATGGTTATGC 57.321 36.000 0.00 0.00 34.21 3.14
2002 2226 5.567037 TGTATTAGCTCATGGTTATGCCT 57.433 39.130 0.00 0.00 38.35 4.75
2034 2258 4.223923 ACAGGGATCTGAAGGTAGACTTTG 59.776 45.833 0.00 0.00 43.49 2.77
2242 2466 3.094572 ACATCTTGCATTTTCCTCCCAG 58.905 45.455 0.00 0.00 0.00 4.45
2259 2483 2.092212 CCCAGAAGTACTTGGCATCCAT 60.092 50.000 14.14 0.00 31.53 3.41
2274 2500 6.297582 TGGCATCCATTTGAAAGAAAATTGT 58.702 32.000 0.00 0.00 0.00 2.71
2275 2501 7.448420 TGGCATCCATTTGAAAGAAAATTGTA 58.552 30.769 0.00 0.00 0.00 2.41
2304 2530 6.392354 AGCATTATTGTTCATTGTCTTGTGG 58.608 36.000 0.00 0.00 0.00 4.17
2330 2558 5.111989 ACTGATAGTCGATTTGTGTGATGG 58.888 41.667 0.00 0.00 0.00 3.51
2331 2559 3.871006 TGATAGTCGATTTGTGTGATGGC 59.129 43.478 0.00 0.00 0.00 4.40
2339 2567 0.892814 TTGTGTGATGGCGGCATTGA 60.893 50.000 26.52 13.02 0.00 2.57
2374 2602 6.633856 ACTGATTTCTTGTTTTCCATATGGC 58.366 36.000 17.58 3.46 34.44 4.40
2485 2719 0.969149 TGGATGAGCAGTTCGACACT 59.031 50.000 0.00 0.00 35.35 3.55
2602 2956 3.181497 TGCATTTGAGATTTCTTAGCGGC 60.181 43.478 0.00 0.00 0.00 6.53
2857 3211 0.179121 TCGCCACGGCATGTAGTTAG 60.179 55.000 9.11 0.00 42.06 2.34
3355 5152 5.409826 CCGGATCTATTCTCCATTGCTTAAC 59.590 44.000 0.00 0.00 32.72 2.01
3368 5165 8.099364 TCCATTGCTTAACTCTTCTACAAAAG 57.901 34.615 0.00 0.00 0.00 2.27
3460 5257 0.846693 AGACAAGGGCTTGACAACCT 59.153 50.000 0.00 0.21 42.93 3.50
3534 5331 9.787435 TTGTTGACCTGTGTAGTTTAGAATATT 57.213 29.630 0.00 0.00 0.00 1.28
3581 5378 6.877611 TCTTAACTAAGGGAAAACTTGCTG 57.122 37.500 0.00 0.00 34.14 4.41
3588 5385 3.295973 AGGGAAAACTTGCTGCTTGTTA 58.704 40.909 0.00 0.00 0.00 2.41
3589 5386 3.704061 AGGGAAAACTTGCTGCTTGTTAA 59.296 39.130 0.00 0.00 0.00 2.01
3622 5419 1.557832 CTTGGGGGAATCCTAACGACA 59.442 52.381 0.00 0.00 32.27 4.35
3689 5492 0.753111 GGCCTTGGCATTCTTCCGAT 60.753 55.000 14.04 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.329542 ATTGGCCGCACTCCATCGT 62.330 57.895 0.00 0.00 32.92 3.73
83 85 1.753463 CGTAGAGGAGACGGGCCTT 60.753 63.158 0.84 0.00 35.44 4.35
168 227 2.106683 GGCATACCTCGCGTGCTTT 61.107 57.895 16.71 0.30 38.83 3.51
169 228 2.511600 GGCATACCTCGCGTGCTT 60.512 61.111 16.71 2.64 38.83 3.91
181 240 1.987306 TGTGGCTGTCGAGGGCATA 60.987 57.895 15.54 11.30 41.11 3.14
183 242 4.314440 GTGTGGCTGTCGAGGGCA 62.314 66.667 9.89 9.89 36.92 5.36
213 283 1.153628 GTGGCCGCAGTCGAAGTAT 60.154 57.895 12.58 0.00 38.10 2.12
226 296 2.668550 GTGTTGGTCGGAGTGGCC 60.669 66.667 0.00 0.00 0.00 5.36
269 339 0.798771 CTCGGAGTTGTAGCGTCTGC 60.799 60.000 0.00 0.00 43.24 4.26
271 341 1.313812 CCCTCGGAGTTGTAGCGTCT 61.314 60.000 4.02 0.00 0.00 4.18
272 342 1.139095 CCCTCGGAGTTGTAGCGTC 59.861 63.158 4.02 0.00 0.00 5.19
276 346 0.105039 GCCATCCCTCGGAGTTGTAG 59.895 60.000 4.02 0.00 34.05 2.74
291 361 2.044053 CCCCACCATTGACGCCAT 60.044 61.111 0.00 0.00 0.00 4.40
363 433 2.109181 GGGTACTCCATCAGCGGC 59.891 66.667 0.00 0.00 35.00 6.53
364 434 2.417516 CGGGTACTCCATCAGCGG 59.582 66.667 0.00 0.00 34.36 5.52
368 438 3.151710 CCGCCGGGTACTCCATCA 61.152 66.667 2.18 0.00 34.36 3.07
369 439 3.925090 CCCGCCGGGTACTCCATC 61.925 72.222 15.86 0.00 38.25 3.51
383 453 3.157949 GAGAGAAGGAGGGGCCCG 61.158 72.222 18.95 0.00 37.37 6.13
386 456 3.855853 GGCGAGAGAAGGAGGGGC 61.856 72.222 0.00 0.00 0.00 5.80
405 475 2.435938 GTCCAGGAATTGCCGCGA 60.436 61.111 8.23 0.00 43.43 5.87
406 476 3.864686 CGTCCAGGAATTGCCGCG 61.865 66.667 0.00 0.00 43.43 6.46
413 483 4.162690 GCCTCGGCGTCCAGGAAT 62.163 66.667 16.41 0.00 30.32 3.01
485 555 2.304831 GGCTTGAAGGGGAGGAGCT 61.305 63.158 0.00 0.00 33.96 4.09
494 564 1.738099 CGTGTCTCCGGCTTGAAGG 60.738 63.158 0.00 0.00 0.00 3.46
496 566 2.342279 CCGTGTCTCCGGCTTGAA 59.658 61.111 0.00 0.00 41.78 2.69
498 568 1.672854 TATCCCGTGTCTCCGGCTTG 61.673 60.000 0.00 0.00 46.71 4.01
503 573 2.025727 GCGTATCCCGTGTCTCCG 59.974 66.667 0.00 0.00 39.32 4.63
552 622 2.989639 CCGCCCTCCTTGATGACA 59.010 61.111 0.00 0.00 0.00 3.58
575 645 0.829990 GCAGAAGGAGGGAGGAGAAG 59.170 60.000 0.00 0.00 0.00 2.85
578 648 0.620121 AAGGCAGAAGGAGGGAGGAG 60.620 60.000 0.00 0.00 0.00 3.69
588 658 1.888215 TCAGCTTGACAAGGCAGAAG 58.112 50.000 16.80 0.00 0.00 2.85
590 660 1.417517 TCTTCAGCTTGACAAGGCAGA 59.582 47.619 16.80 8.56 0.00 4.26
591 661 1.534595 GTCTTCAGCTTGACAAGGCAG 59.465 52.381 16.80 6.52 33.75 4.85
592 662 1.597742 GTCTTCAGCTTGACAAGGCA 58.402 50.000 16.80 0.00 33.75 4.75
597 667 0.319900 GCTCGGTCTTCAGCTTGACA 60.320 55.000 11.74 0.00 35.11 3.58
620 690 3.366052 AAAATATGTGCTCCCGTTCCT 57.634 42.857 0.00 0.00 0.00 3.36
641 711 1.463056 CGCTATCCACGCTCACAAAAA 59.537 47.619 0.00 0.00 0.00 1.94
642 712 1.075542 CGCTATCCACGCTCACAAAA 58.924 50.000 0.00 0.00 0.00 2.44
643 713 0.037697 ACGCTATCCACGCTCACAAA 60.038 50.000 0.00 0.00 0.00 2.83
644 714 0.735978 CACGCTATCCACGCTCACAA 60.736 55.000 0.00 0.00 0.00 3.33
645 715 1.153842 CACGCTATCCACGCTCACA 60.154 57.895 0.00 0.00 0.00 3.58
646 716 1.138883 TCACGCTATCCACGCTCAC 59.861 57.895 0.00 0.00 0.00 3.51
647 717 1.138883 GTCACGCTATCCACGCTCA 59.861 57.895 0.00 0.00 0.00 4.26
648 718 1.138883 TGTCACGCTATCCACGCTC 59.861 57.895 0.00 0.00 0.00 5.03
649 719 1.153823 GTGTCACGCTATCCACGCT 60.154 57.895 0.00 0.00 0.00 5.07
650 720 0.806102 ATGTGTCACGCTATCCACGC 60.806 55.000 0.00 0.00 0.00 5.34
651 721 1.640428 AATGTGTCACGCTATCCACG 58.360 50.000 0.00 0.00 0.00 4.94
652 722 4.419522 AAAAATGTGTCACGCTATCCAC 57.580 40.909 0.00 0.00 0.00 4.02
676 746 4.024387 GTGTCACGCTATCCTCAACAAAAA 60.024 41.667 0.00 0.00 0.00 1.94
677 747 3.496884 GTGTCACGCTATCCTCAACAAAA 59.503 43.478 0.00 0.00 0.00 2.44
678 748 3.064207 GTGTCACGCTATCCTCAACAAA 58.936 45.455 0.00 0.00 0.00 2.83
679 749 2.036604 TGTGTCACGCTATCCTCAACAA 59.963 45.455 0.00 0.00 0.00 2.83
680 750 1.616374 TGTGTCACGCTATCCTCAACA 59.384 47.619 0.00 0.00 0.00 3.33
681 751 2.363788 TGTGTCACGCTATCCTCAAC 57.636 50.000 0.00 0.00 0.00 3.18
682 752 4.729227 TTATGTGTCACGCTATCCTCAA 57.271 40.909 0.00 0.00 0.00 3.02
683 753 4.081917 TGTTTATGTGTCACGCTATCCTCA 60.082 41.667 0.00 0.00 0.00 3.86
684 754 4.430007 TGTTTATGTGTCACGCTATCCTC 58.570 43.478 0.00 0.00 0.00 3.71
685 755 4.465632 TGTTTATGTGTCACGCTATCCT 57.534 40.909 0.00 0.00 0.00 3.24
686 756 5.734855 AATGTTTATGTGTCACGCTATCC 57.265 39.130 0.00 0.00 0.00 2.59
687 757 6.344800 CGTAATGTTTATGTGTCACGCTATC 58.655 40.000 0.00 0.00 0.00 2.08
688 758 5.233476 CCGTAATGTTTATGTGTCACGCTAT 59.767 40.000 0.00 0.00 0.00 2.97
689 759 4.563580 CCGTAATGTTTATGTGTCACGCTA 59.436 41.667 0.00 0.00 0.00 4.26
690 760 3.369756 CCGTAATGTTTATGTGTCACGCT 59.630 43.478 0.00 0.00 0.00 5.07
691 761 3.123959 ACCGTAATGTTTATGTGTCACGC 59.876 43.478 0.00 0.00 0.00 5.34
692 762 4.914312 ACCGTAATGTTTATGTGTCACG 57.086 40.909 0.00 0.00 0.00 4.35
693 763 7.432838 ACAAAAACCGTAATGTTTATGTGTCAC 59.567 33.333 0.00 0.00 37.46 3.67
694 764 7.481642 ACAAAAACCGTAATGTTTATGTGTCA 58.518 30.769 0.00 0.00 37.46 3.58
695 765 7.917720 ACAAAAACCGTAATGTTTATGTGTC 57.082 32.000 0.00 0.00 37.46 3.67
696 766 7.592164 GCTACAAAAACCGTAATGTTTATGTGT 59.408 33.333 0.00 0.00 37.46 3.72
697 767 7.591795 TGCTACAAAAACCGTAATGTTTATGTG 59.408 33.333 0.00 0.00 37.46 3.21
698 768 7.649973 TGCTACAAAAACCGTAATGTTTATGT 58.350 30.769 0.00 0.00 37.46 2.29
699 769 8.421701 GTTGCTACAAAAACCGTAATGTTTATG 58.578 33.333 0.00 0.00 37.46 1.90
700 770 8.136165 TGTTGCTACAAAAACCGTAATGTTTAT 58.864 29.630 0.00 0.00 37.46 1.40
701 771 7.431668 GTGTTGCTACAAAAACCGTAATGTTTA 59.568 33.333 1.60 0.00 37.46 2.01
702 772 6.253942 GTGTTGCTACAAAAACCGTAATGTTT 59.746 34.615 1.60 0.00 40.05 2.83
703 773 5.744819 GTGTTGCTACAAAAACCGTAATGTT 59.255 36.000 1.60 0.00 35.69 2.71
704 774 5.163642 TGTGTTGCTACAAAAACCGTAATGT 60.164 36.000 1.60 0.00 35.69 2.71
705 775 5.274718 TGTGTTGCTACAAAAACCGTAATG 58.725 37.500 1.60 0.00 35.69 1.90
706 776 5.502153 TGTGTTGCTACAAAAACCGTAAT 57.498 34.783 1.60 0.00 35.69 1.89
707 777 4.959596 TGTGTTGCTACAAAAACCGTAA 57.040 36.364 1.60 0.00 35.69 3.18
708 778 6.615264 TTATGTGTTGCTACAAAAACCGTA 57.385 33.333 1.60 0.00 35.69 4.02
709 779 5.502153 TTATGTGTTGCTACAAAAACCGT 57.498 34.783 1.60 0.00 35.69 4.83
710 780 5.108555 CGTTTATGTGTTGCTACAAAAACCG 60.109 40.000 19.46 14.32 35.69 4.44
711 781 5.744819 ACGTTTATGTGTTGCTACAAAAACC 59.255 36.000 19.46 4.90 35.69 3.27
712 782 6.799786 ACGTTTATGTGTTGCTACAAAAAC 57.200 33.333 17.33 17.33 35.69 2.43
713 783 7.163845 CGTAACGTTTATGTGTTGCTACAAAAA 59.836 33.333 5.91 2.00 35.69 1.94
714 784 6.628065 CGTAACGTTTATGTGTTGCTACAAAA 59.372 34.615 5.91 0.00 35.69 2.44
715 785 6.128066 CGTAACGTTTATGTGTTGCTACAAA 58.872 36.000 5.91 0.00 35.69 2.83
716 786 5.233902 ACGTAACGTTTATGTGTTGCTACAA 59.766 36.000 5.91 0.00 36.35 2.41
717 787 4.744137 ACGTAACGTTTATGTGTTGCTACA 59.256 37.500 5.91 0.00 36.35 2.74
718 788 5.254669 ACGTAACGTTTATGTGTTGCTAC 57.745 39.130 5.91 0.00 36.35 3.58
732 802 2.845363 AGATTCCCCAAACGTAACGT 57.155 45.000 0.00 0.00 43.97 3.99
733 803 3.995705 TGTAAGATTCCCCAAACGTAACG 59.004 43.478 0.00 0.00 0.00 3.18
734 804 5.065602 GGATGTAAGATTCCCCAAACGTAAC 59.934 44.000 0.00 0.00 0.00 2.50
735 805 5.045432 AGGATGTAAGATTCCCCAAACGTAA 60.045 40.000 0.00 0.00 32.05 3.18
736 806 4.472108 AGGATGTAAGATTCCCCAAACGTA 59.528 41.667 0.00 0.00 32.05 3.57
737 807 3.265995 AGGATGTAAGATTCCCCAAACGT 59.734 43.478 0.00 0.00 32.05 3.99
738 808 3.627577 CAGGATGTAAGATTCCCCAAACG 59.372 47.826 0.00 0.00 32.05 3.60
739 809 3.954258 CCAGGATGTAAGATTCCCCAAAC 59.046 47.826 0.00 0.00 32.05 2.93
740 810 3.052944 CCCAGGATGTAAGATTCCCCAAA 60.053 47.826 0.00 0.00 32.05 3.28
741 811 2.513738 CCCAGGATGTAAGATTCCCCAA 59.486 50.000 0.00 0.00 32.05 4.12
742 812 2.135189 CCCAGGATGTAAGATTCCCCA 58.865 52.381 0.00 0.00 32.05 4.96
743 813 1.202940 GCCCAGGATGTAAGATTCCCC 60.203 57.143 0.00 0.00 32.05 4.81
744 814 1.777272 AGCCCAGGATGTAAGATTCCC 59.223 52.381 0.00 0.00 32.05 3.97
745 815 2.487986 CCAGCCCAGGATGTAAGATTCC 60.488 54.545 0.61 0.00 0.00 3.01
746 816 2.439507 TCCAGCCCAGGATGTAAGATTC 59.560 50.000 0.61 0.00 31.23 2.52
747 817 2.492025 TCCAGCCCAGGATGTAAGATT 58.508 47.619 0.61 0.00 31.23 2.40
748 818 2.196742 TCCAGCCCAGGATGTAAGAT 57.803 50.000 0.61 0.00 31.23 2.40
754 824 0.110104 GAGGATTCCAGCCCAGGATG 59.890 60.000 5.29 0.00 37.56 3.51
757 827 1.530771 CAGAGGATTCCAGCCCAGG 59.469 63.158 5.29 0.00 0.00 4.45
758 828 1.153005 GCAGAGGATTCCAGCCCAG 60.153 63.158 5.29 0.00 0.00 4.45
810 880 3.252627 AAATGCTTTTGGGCCGGGC 62.253 57.895 22.00 22.00 0.00 6.13
926 997 0.470341 GGAGGTATGAAGGTGGAGGC 59.530 60.000 0.00 0.00 0.00 4.70
952 1062 3.118261 AGAAACACAGCAAGAGAAGGTGA 60.118 43.478 0.00 0.00 37.86 4.02
1061 1171 2.083774 CGCCTTTCTTATGCTGGTTCA 58.916 47.619 0.00 0.00 0.00 3.18
1239 1349 2.354305 GACACGAACACCGCGAGT 60.354 61.111 8.23 2.18 43.32 4.18
1263 1373 2.943978 CGACCGGAAGTTGGAGCCT 61.944 63.158 9.46 0.00 0.00 4.58
1338 1448 2.107366 TCATCGTCACCTGGCTTATCA 58.893 47.619 0.00 0.00 0.00 2.15
1362 1472 1.542492 AAGAGCTGCAGGAAACATGG 58.458 50.000 17.12 0.00 0.00 3.66
1367 1477 1.956477 GTCCAAAAGAGCTGCAGGAAA 59.044 47.619 17.12 0.00 0.00 3.13
1521 1633 7.642669 TCAGAACATTCAAAAGTTCATCTGTC 58.357 34.615 11.94 0.00 44.94 3.51
1534 1646 4.580167 CAGAACCAACCTCAGAACATTCAA 59.420 41.667 0.00 0.00 0.00 2.69
1583 1697 8.618702 AGACCAAATGAATGATATGAGATGAC 57.381 34.615 0.00 0.00 0.00 3.06
1590 1704 7.808381 GCATGAAGAGACCAAATGAATGATATG 59.192 37.037 0.00 0.00 0.00 1.78
1653 1805 8.311109 ACAAGAAGTTCTTTTGAGCCTTTAAAA 58.689 29.630 15.60 0.00 33.78 1.52
1654 1806 7.836842 ACAAGAAGTTCTTTTGAGCCTTTAAA 58.163 30.769 15.60 0.00 33.78 1.52
1655 1807 7.404671 ACAAGAAGTTCTTTTGAGCCTTTAA 57.595 32.000 15.60 0.00 33.78 1.52
1656 1808 6.039382 GGACAAGAAGTTCTTTTGAGCCTTTA 59.961 38.462 15.60 0.00 33.78 1.85
1657 1809 5.163509 GGACAAGAAGTTCTTTTGAGCCTTT 60.164 40.000 15.60 0.00 33.78 3.11
1658 1810 4.339530 GGACAAGAAGTTCTTTTGAGCCTT 59.660 41.667 15.60 0.00 33.78 4.35
1659 1811 3.885901 GGACAAGAAGTTCTTTTGAGCCT 59.114 43.478 15.60 0.00 33.78 4.58
1660 1812 3.885901 AGGACAAGAAGTTCTTTTGAGCC 59.114 43.478 15.60 12.45 33.78 4.70
1661 1813 5.506686 AAGGACAAGAAGTTCTTTTGAGC 57.493 39.130 15.60 4.90 43.80 4.26
1668 1820 6.681368 GCATTTCACAAAGGACAAGAAGTTCT 60.681 38.462 0.00 0.00 37.83 3.01
1669 1821 5.460091 GCATTTCACAAAGGACAAGAAGTTC 59.540 40.000 0.00 0.00 0.00 3.01
1670 1822 5.105392 TGCATTTCACAAAGGACAAGAAGTT 60.105 36.000 0.00 0.00 0.00 2.66
1671 1823 4.402155 TGCATTTCACAAAGGACAAGAAGT 59.598 37.500 0.00 0.00 0.00 3.01
1672 1824 4.935702 TGCATTTCACAAAGGACAAGAAG 58.064 39.130 0.00 0.00 0.00 2.85
1673 1825 4.998671 TGCATTTCACAAAGGACAAGAA 57.001 36.364 0.00 0.00 0.00 2.52
1674 1826 5.534278 TGTATGCATTTCACAAAGGACAAGA 59.466 36.000 3.54 0.00 0.00 3.02
1675 1827 5.771469 TGTATGCATTTCACAAAGGACAAG 58.229 37.500 3.54 0.00 0.00 3.16
1676 1828 5.781210 TGTATGCATTTCACAAAGGACAA 57.219 34.783 3.54 0.00 0.00 3.18
1677 1829 5.981088 ATGTATGCATTTCACAAAGGACA 57.019 34.783 3.54 0.00 29.54 4.02
1702 1854 2.352814 CCCGTCCACAGTCAGAAGTTAG 60.353 54.545 0.00 0.00 0.00 2.34
1716 1868 0.834687 AGGTACAGAAAGCCCGTCCA 60.835 55.000 0.00 0.00 0.00 4.02
1721 1873 2.789409 ATGTGAGGTACAGAAAGCCC 57.211 50.000 0.00 0.00 43.80 5.19
1737 1889 6.598457 GCAGCTTCAGAATATGATGGATATGT 59.402 38.462 0.00 0.00 37.89 2.29
1744 1896 4.023963 CACTGGCAGCTTCAGAATATGATG 60.024 45.833 15.89 0.00 37.89 3.07
1808 2021 5.590530 AGAGCCTAGAAGACAGTAACATG 57.409 43.478 0.00 0.00 0.00 3.21
1863 2076 1.664965 GTCAGAGCCGTCACACCAC 60.665 63.158 0.00 0.00 0.00 4.16
1864 2077 2.734591 GTCAGAGCCGTCACACCA 59.265 61.111 0.00 0.00 0.00 4.17
1865 2078 2.048127 GGTCAGAGCCGTCACACC 60.048 66.667 0.00 0.00 0.00 4.16
1905 2128 2.024080 ACATGGGTGCATTTGGAGGTAT 60.024 45.455 0.00 0.00 0.00 2.73
1907 2130 0.114954 ACATGGGTGCATTTGGAGGT 59.885 50.000 0.00 0.00 0.00 3.85
1975 2199 7.824289 GGCATAACCATGAGCTAATACATTCTA 59.176 37.037 0.00 0.00 38.86 2.10
1978 2202 6.546484 AGGCATAACCATGAGCTAATACATT 58.454 36.000 0.00 0.00 43.14 2.71
1983 2207 6.432162 CACAATAGGCATAACCATGAGCTAAT 59.568 38.462 0.00 0.00 43.14 1.73
2000 2224 5.102953 TCAGATCCCTGTTTCACAATAGG 57.897 43.478 0.00 0.00 40.30 2.57
2002 2226 5.014123 ACCTTCAGATCCCTGTTTCACAATA 59.986 40.000 0.00 0.00 41.16 1.90
2034 2258 5.334182 GCTTCAAGTAACCAGCAAGTAGAAC 60.334 44.000 0.00 0.00 32.17 3.01
2242 2466 5.643379 TTCAAATGGATGCCAAGTACTTC 57.357 39.130 4.77 0.00 36.95 3.01
2259 2483 7.783090 TGCTTGCATACAATTTTCTTTCAAA 57.217 28.000 0.00 0.00 34.61 2.69
2274 2500 7.774134 AGACAATGAACAATAATGCTTGCATA 58.226 30.769 8.61 0.00 0.00 3.14
2275 2501 6.636705 AGACAATGAACAATAATGCTTGCAT 58.363 32.000 1.81 1.81 0.00 3.96
2304 2530 7.254117 CCATCACACAAATCGACTATCAGTTAC 60.254 40.741 0.00 0.00 0.00 2.50
2339 2567 7.516198 AACAAGAAATCAGTAGTTCAGCAAT 57.484 32.000 0.00 0.00 32.11 3.56
2374 2602 8.940768 TTTTTCCAAAAGAGAAACAGGTAATG 57.059 30.769 0.00 0.00 33.11 1.90
2485 2719 0.326618 TTTGGGCCAAGGTTTTCCCA 60.327 50.000 19.90 0.00 46.34 4.37
2857 3211 4.996113 CAGACAAACGGTGTGTGC 57.004 55.556 9.06 1.00 43.78 4.57
3017 3377 4.377021 TGAACACAGTACAAGGTGACATC 58.623 43.478 16.19 11.89 38.38 3.06
3368 5165 4.446385 GGAACGGCAAATAAAAGGAACAAC 59.554 41.667 0.00 0.00 0.00 3.32
3460 5257 1.129917 TGTCCCCAACACGGTAAGAA 58.870 50.000 0.00 0.00 31.20 2.52
3544 5341 6.999871 CCTTAGTTAAGAACCAAGGTTTACCA 59.000 38.462 5.87 0.00 42.86 3.25
3546 5343 7.226441 TCCCTTAGTTAAGAACCAAGGTTTAC 58.774 38.462 13.27 3.27 45.28 2.01
3581 5378 4.336280 AGAGGAAGGGTGAATTAACAAGC 58.664 43.478 0.00 0.00 0.00 4.01
3588 5385 1.359130 CCCCAAGAGGAAGGGTGAATT 59.641 52.381 0.00 0.00 43.89 2.17
3589 5386 1.002857 CCCCAAGAGGAAGGGTGAAT 58.997 55.000 0.00 0.00 43.89 2.57
3622 5419 1.687493 GGAGGTGGCTGCTACTCCT 60.687 63.158 21.74 11.43 44.74 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.