Multiple sequence alignment - TraesCS7D01G240100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G240100 chr7D 100.000 8189 0 0 1 8189 204457464 204449276 0.000000e+00 15123.0
1 TraesCS7D01G240100 chr7D 90.000 80 4 3 7772 7847 287721376 287721297 5.230000e-17 100.0
2 TraesCS7D01G240100 chr7B 95.666 5422 131 43 237 5584 168363925 168358534 0.000000e+00 8615.0
3 TraesCS7D01G240100 chr7B 94.286 1890 71 19 5585 7450 168358474 168356598 0.000000e+00 2857.0
4 TraesCS7D01G240100 chr7B 85.503 338 26 8 7873 8189 168356109 168355774 1.700000e-86 331.0
5 TraesCS7D01G240100 chr7B 92.958 213 15 0 1 213 673685090 673685302 2.220000e-80 311.0
6 TraesCS7D01G240100 chr7B 90.341 176 15 2 7602 7776 168356287 168356113 6.390000e-56 230.0
7 TraesCS7D01G240100 chr7B 88.095 84 6 3 7768 7847 388716518 388716435 6.770000e-16 97.1
8 TraesCS7D01G240100 chr7A 96.662 2217 64 7 2722 4934 216427772 216425562 0.000000e+00 3675.0
9 TraesCS7D01G240100 chr7A 92.027 2107 107 21 468 2530 216429914 216427825 0.000000e+00 2904.0
10 TraesCS7D01G240100 chr7A 93.052 1871 67 35 5585 7432 216424789 216422959 0.000000e+00 2676.0
11 TraesCS7D01G240100 chr7A 95.789 570 17 2 5017 5586 216425413 216424851 0.000000e+00 913.0
12 TraesCS7D01G240100 chr7A 93.333 210 14 0 2 211 284120471 284120262 2.220000e-80 311.0
13 TraesCS7D01G240100 chr7A 84.436 257 11 12 7942 8173 216422254 216422002 8.270000e-55 226.0
14 TraesCS7D01G240100 chr7A 91.083 157 10 2 7628 7780 216422452 216422296 8.330000e-50 209.0
15 TraesCS7D01G240100 chr7A 92.453 106 7 1 298 403 216429999 216429895 5.120000e-32 150.0
16 TraesCS7D01G240100 chr7A 98.361 61 1 0 4971 5031 216425430 216425370 3.130000e-19 108.0
17 TraesCS7D01G240100 chr3D 91.064 235 21 0 1 235 411810222 411810456 1.330000e-82 318.0
18 TraesCS7D01G240100 chr3D 84.158 101 16 0 2338 2438 381013807 381013907 1.880000e-16 99.0
19 TraesCS7D01G240100 chr3D 90.541 74 3 3 7778 7847 939706 939633 2.430000e-15 95.3
20 TraesCS7D01G240100 chr3D 90.541 74 3 4 7778 7847 123018569 123018642 2.430000e-15 95.3
21 TraesCS7D01G240100 chr6A 92.958 213 15 0 1 213 71509077 71509289 2.220000e-80 311.0
22 TraesCS7D01G240100 chr6A 87.059 85 7 1 7767 7847 1841226 1841142 8.750000e-15 93.5
23 TraesCS7D01G240100 chr2B 92.488 213 16 0 1 213 642811511 642811299 1.030000e-78 305.0
24 TraesCS7D01G240100 chr2B 88.344 163 19 0 3996 4158 201373505 201373343 6.480000e-46 196.0
25 TraesCS7D01G240100 chr2B 87.179 156 17 2 4616 4768 201372882 201372727 3.040000e-39 174.0
26 TraesCS7D01G240100 chr2B 86.905 84 7 3 7768 7847 289960891 289960808 3.150000e-14 91.6
27 TraesCS7D01G240100 chr1A 92.488 213 16 0 1 213 255865065 255864853 1.030000e-78 305.0
28 TraesCS7D01G240100 chr1A 92.453 212 16 0 1 212 584496390 584496601 3.710000e-78 303.0
29 TraesCS7D01G240100 chr1A 93.443 61 2 1 2647 2705 508633016 508633076 1.130000e-13 89.8
30 TraesCS7D01G240100 chr1A 85.000 80 8 2 7773 7848 409834775 409834696 2.450000e-10 78.7
31 TraesCS7D01G240100 chr1A 84.810 79 8 1 7773 7847 41368713 41368635 8.810000e-10 76.8
32 TraesCS7D01G240100 chr4D 89.344 244 20 2 1 239 416579720 416579962 1.340000e-77 302.0
33 TraesCS7D01G240100 chr4D 86.420 81 7 2 7771 7847 335315734 335315814 1.460000e-12 86.1
34 TraesCS7D01G240100 chr1D 92.019 213 16 1 1 213 95172673 95172884 1.730000e-76 298.0
35 TraesCS7D01G240100 chr2D 85.897 156 19 2 4616 4768 143307536 143307381 6.580000e-36 163.0
36 TraesCS7D01G240100 chr2D 96.364 55 2 0 2653 2707 247819805 247819751 3.150000e-14 91.6
37 TraesCS7D01G240100 chr2A 85.897 156 19 2 4616 4768 158043761 158043916 6.580000e-36 163.0
38 TraesCS7D01G240100 chr2A 86.207 87 7 4 7765 7847 78805665 78805750 1.130000e-13 89.8
39 TraesCS7D01G240100 chr3A 85.366 123 18 0 3266 3388 504160489 504160611 2.400000e-25 128.0
40 TraesCS7D01G240100 chr1B 96.667 60 2 0 2646 2705 572529352 572529411 5.230000e-17 100.0
41 TraesCS7D01G240100 chr1B 87.500 80 6 1 7772 7847 230031799 230031878 1.130000e-13 89.8
42 TraesCS7D01G240100 chr1B 93.443 61 2 1 2647 2705 555629384 555629444 1.130000e-13 89.8
43 TraesCS7D01G240100 chr1B 87.838 74 4 2 2648 2721 683383600 683383532 1.890000e-11 82.4
44 TraesCS7D01G240100 chr4B 88.095 84 6 3 7768 7847 136939885 136939802 6.770000e-16 97.1
45 TraesCS7D01G240100 chr4B 86.905 84 7 3 7768 7847 278295820 278295737 3.150000e-14 91.6
46 TraesCS7D01G240100 chr4B 83.721 86 9 3 7767 7847 12233508 12233423 8.810000e-10 76.8
47 TraesCS7D01G240100 chr6B 94.737 57 3 0 2646 2702 431227773 431227717 1.130000e-13 89.8
48 TraesCS7D01G240100 chr6B 85.882 85 8 1 7767 7847 65452597 65452513 4.070000e-13 87.9
49 TraesCS7D01G240100 chr5D 94.737 57 3 0 2649 2705 369429228 369429172 1.130000e-13 89.8
50 TraesCS7D01G240100 chr5D 83.951 81 9 3 7771 7847 371845059 371845139 3.170000e-09 75.0
51 TraesCS7D01G240100 chr5A 86.207 87 7 3 7766 7847 706078641 706078555 1.130000e-13 89.8
52 TraesCS7D01G240100 chr4A 87.671 73 3 4 2655 2727 606733856 606733790 6.810000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G240100 chr7D 204449276 204457464 8188 True 15123.000 15123 100.000000 1 8189 1 chr7D.!!$R1 8188
1 TraesCS7D01G240100 chr7B 168355774 168363925 8151 True 3008.250 8615 91.449000 237 8189 4 chr7B.!!$R2 7952
2 TraesCS7D01G240100 chr7A 216422002 216429999 7997 True 1357.625 3675 92.982875 298 8173 8 chr7A.!!$R2 7875

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
92 93 0.028374 AAAAACAACGTTCGAGCCGG 59.972 50.000 0.00 0.00 0.0 6.13 F
261 262 0.249031 CTGATGCGTGCGTGGATAGA 60.249 55.000 0.00 0.00 0.0 1.98 F
1443 1501 0.322975 ATTCTGCACGCCTCTTCACT 59.677 50.000 0.00 0.00 0.0 3.41 F
1726 1784 1.136502 GCAAAGAAGAGAGCAACGTCG 60.137 52.381 0.00 0.00 0.0 5.12 F
2666 2740 1.108776 TTTGATACTCCCTCCGTCCG 58.891 55.000 0.00 0.00 0.0 4.79 F
3095 3199 3.824151 TGATGATTTGTCGTTGCACATG 58.176 40.909 0.00 0.00 0.0 3.21 F
3957 4069 6.870971 TGTTTGAGTGGGTTTGTATACTTC 57.129 37.500 4.17 0.00 0.0 3.01 F
5094 5306 4.018960 ACAACTATCCTGCTCAAAGACCAT 60.019 41.667 0.00 0.00 0.0 3.55 F
6021 6302 3.826729 GGTAAGACTTGCAAATCCACCTT 59.173 43.478 17.54 4.24 0.0 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1650 1708 0.179240 GCTCGAACAATGACACAGCG 60.179 55.000 0.00 0.00 0.00 5.18 R
1726 1784 0.456995 CAGCCGTCGGTTTCTCTCTC 60.457 60.000 13.94 0.00 0.00 3.20 R
2556 2630 2.939103 GTGGGATGTGAAGAAGAATCCG 59.061 50.000 0.00 0.00 39.66 4.18 R
3480 3584 1.613630 AAGCGTCAGATGGGTCCCT 60.614 57.895 10.00 0.00 0.00 4.20 R
3957 4069 4.488126 TTTCAGTTCGCCATTTCAGAAG 57.512 40.909 0.00 0.00 0.00 2.85 R
4231 4346 6.737254 AAATCCTTACGTGAAGTTATGTGG 57.263 37.500 0.00 0.00 32.74 4.17 R
5300 5513 0.035820 TTTGGACACCGCCCTGATAC 60.036 55.000 0.00 0.00 0.00 2.24 R
6123 6404 1.745087 CAACACAGTTCAGCAACCACT 59.255 47.619 0.00 0.00 32.22 4.00 R
7532 8087 0.179150 ACGTTTCAAAAGCTTGCGCA 60.179 45.000 5.66 5.66 39.10 6.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.987752 GAAAGATACTTCGGGCCGG 58.012 57.895 27.98 13.85 0.00 6.13
19 20 0.532196 GAAAGATACTTCGGGCCGGG 60.532 60.000 27.98 20.93 0.00 5.73
20 21 2.604299 AAAGATACTTCGGGCCGGGC 62.604 60.000 27.98 22.00 0.00 6.13
21 22 3.547513 GATACTTCGGGCCGGGCT 61.548 66.667 28.80 10.22 0.00 5.19
22 23 3.516866 GATACTTCGGGCCGGGCTC 62.517 68.421 28.80 15.19 0.00 4.70
33 34 2.438434 CGGGCTCGGGCTTCAATT 60.438 61.111 7.48 0.00 38.73 2.32
34 35 2.046285 CGGGCTCGGGCTTCAATTT 61.046 57.895 7.48 0.00 38.73 1.82
35 36 1.595093 CGGGCTCGGGCTTCAATTTT 61.595 55.000 7.48 0.00 38.73 1.82
36 37 0.608130 GGGCTCGGGCTTCAATTTTT 59.392 50.000 7.48 0.00 38.73 1.94
37 38 1.404181 GGGCTCGGGCTTCAATTTTTC 60.404 52.381 7.48 0.00 38.73 2.29
38 39 1.546029 GGCTCGGGCTTCAATTTTTCT 59.454 47.619 7.48 0.00 38.73 2.52
39 40 2.599659 GCTCGGGCTTCAATTTTTCTG 58.400 47.619 0.00 0.00 35.22 3.02
40 41 2.029918 GCTCGGGCTTCAATTTTTCTGT 60.030 45.455 0.00 0.00 35.22 3.41
41 42 3.190535 GCTCGGGCTTCAATTTTTCTGTA 59.809 43.478 0.00 0.00 35.22 2.74
42 43 4.142381 GCTCGGGCTTCAATTTTTCTGTAT 60.142 41.667 0.00 0.00 35.22 2.29
43 44 5.622233 GCTCGGGCTTCAATTTTTCTGTATT 60.622 40.000 0.00 0.00 35.22 1.89
44 45 6.339587 TCGGGCTTCAATTTTTCTGTATTT 57.660 33.333 0.00 0.00 0.00 1.40
45 46 6.386654 TCGGGCTTCAATTTTTCTGTATTTC 58.613 36.000 0.00 0.00 0.00 2.17
46 47 5.286082 CGGGCTTCAATTTTTCTGTATTTCG 59.714 40.000 0.00 0.00 0.00 3.46
47 48 5.576774 GGGCTTCAATTTTTCTGTATTTCGG 59.423 40.000 0.00 0.00 0.00 4.30
48 49 6.386654 GGCTTCAATTTTTCTGTATTTCGGA 58.613 36.000 0.00 0.00 0.00 4.55
49 50 6.308041 GGCTTCAATTTTTCTGTATTTCGGAC 59.692 38.462 0.00 0.00 0.00 4.79
50 51 6.308041 GCTTCAATTTTTCTGTATTTCGGACC 59.692 38.462 0.00 0.00 0.00 4.46
51 52 5.933790 TCAATTTTTCTGTATTTCGGACCG 58.066 37.500 7.84 7.84 0.00 4.79
52 53 4.957759 ATTTTTCTGTATTTCGGACCGG 57.042 40.909 15.25 0.00 0.00 5.28
53 54 2.389962 TTTCTGTATTTCGGACCGGG 57.610 50.000 15.25 0.00 0.00 5.73
54 55 0.108041 TTCTGTATTTCGGACCGGGC 60.108 55.000 15.25 0.21 0.00 6.13
55 56 0.974010 TCTGTATTTCGGACCGGGCT 60.974 55.000 15.25 1.03 0.00 5.19
56 57 0.107848 CTGTATTTCGGACCGGGCTT 60.108 55.000 15.25 0.00 0.00 4.35
57 58 0.391927 TGTATTTCGGACCGGGCTTG 60.392 55.000 15.25 0.00 0.00 4.01
58 59 1.450669 TATTTCGGACCGGGCTTGC 60.451 57.895 15.25 0.00 0.00 4.01
59 60 2.186602 TATTTCGGACCGGGCTTGCA 62.187 55.000 15.25 0.00 0.00 4.08
91 92 3.519774 AAAAACAACGTTCGAGCCG 57.480 47.368 0.00 5.18 0.00 5.52
92 93 0.028374 AAAAACAACGTTCGAGCCGG 59.972 50.000 0.00 0.00 0.00 6.13
93 94 1.778027 AAAACAACGTTCGAGCCGGG 61.778 55.000 2.18 0.00 0.00 5.73
96 97 4.309950 AACGTTCGAGCCGGGCTT 62.310 61.111 24.71 6.85 39.88 4.35
97 98 3.819877 AACGTTCGAGCCGGGCTTT 62.820 57.895 24.71 9.41 39.88 3.51
98 99 3.488090 CGTTCGAGCCGGGCTTTC 61.488 66.667 24.71 10.75 39.88 2.62
99 100 3.488090 GTTCGAGCCGGGCTTTCG 61.488 66.667 24.71 22.47 39.88 3.46
111 112 2.359975 CTTTCGGGCTTCGGGCTT 60.360 61.111 1.83 0.00 41.46 4.35
112 113 2.671619 TTTCGGGCTTCGGGCTTG 60.672 61.111 1.83 0.00 41.46 4.01
113 114 3.185299 TTTCGGGCTTCGGGCTTGA 62.185 57.895 1.83 0.00 41.46 3.02
114 115 2.478335 TTTCGGGCTTCGGGCTTGAT 62.478 55.000 1.83 0.00 41.46 2.57
115 116 2.438434 CGGGCTTCGGGCTTGATT 60.438 61.111 1.83 0.00 41.46 2.57
116 117 2.046285 CGGGCTTCGGGCTTGATTT 61.046 57.895 1.83 0.00 41.46 2.17
117 118 1.809869 GGGCTTCGGGCTTGATTTC 59.190 57.895 1.83 0.00 41.46 2.17
118 119 1.429423 GGCTTCGGGCTTGATTTCG 59.571 57.895 1.83 0.00 41.46 3.46
119 120 1.429423 GCTTCGGGCTTGATTTCGG 59.571 57.895 0.00 0.00 38.06 4.30
120 121 1.993369 GCTTCGGGCTTGATTTCGGG 61.993 60.000 0.00 0.00 38.06 5.14
121 122 0.392461 CTTCGGGCTTGATTTCGGGA 60.392 55.000 0.00 0.00 0.00 5.14
122 123 0.675522 TTCGGGCTTGATTTCGGGAC 60.676 55.000 0.00 0.00 0.00 4.46
135 136 3.081409 GGGACGGGCTCAGGCTTA 61.081 66.667 0.00 0.00 38.73 3.09
136 137 2.666098 GGGACGGGCTCAGGCTTAA 61.666 63.158 0.00 0.00 38.73 1.85
137 138 1.298667 GGACGGGCTCAGGCTTAAA 59.701 57.895 0.00 0.00 38.73 1.52
138 139 0.322187 GGACGGGCTCAGGCTTAAAA 60.322 55.000 0.00 0.00 38.73 1.52
139 140 1.530323 GACGGGCTCAGGCTTAAAAA 58.470 50.000 0.00 0.00 38.73 1.94
140 141 1.199327 GACGGGCTCAGGCTTAAAAAC 59.801 52.381 0.00 0.00 38.73 2.43
141 142 1.243902 CGGGCTCAGGCTTAAAAACA 58.756 50.000 0.00 0.00 38.73 2.83
142 143 1.200020 CGGGCTCAGGCTTAAAAACAG 59.800 52.381 0.00 0.00 38.73 3.16
143 144 1.546029 GGGCTCAGGCTTAAAAACAGG 59.454 52.381 0.00 0.00 38.73 4.00
144 145 1.546029 GGCTCAGGCTTAAAAACAGGG 59.454 52.381 0.00 0.00 38.73 4.45
145 146 2.514803 GCTCAGGCTTAAAAACAGGGA 58.485 47.619 0.00 0.00 35.22 4.20
146 147 2.489722 GCTCAGGCTTAAAAACAGGGAG 59.510 50.000 0.00 0.00 35.22 4.30
147 148 3.756117 CTCAGGCTTAAAAACAGGGAGT 58.244 45.455 0.00 0.00 0.00 3.85
148 149 4.806286 GCTCAGGCTTAAAAACAGGGAGTA 60.806 45.833 0.00 0.00 35.22 2.59
149 150 5.501156 CTCAGGCTTAAAAACAGGGAGTAT 58.499 41.667 0.00 0.00 0.00 2.12
150 151 5.887754 TCAGGCTTAAAAACAGGGAGTATT 58.112 37.500 0.00 0.00 0.00 1.89
151 152 6.311735 TCAGGCTTAAAAACAGGGAGTATTT 58.688 36.000 0.00 0.00 0.00 1.40
152 153 6.433093 TCAGGCTTAAAAACAGGGAGTATTTC 59.567 38.462 0.00 0.00 0.00 2.17
153 154 6.208599 CAGGCTTAAAAACAGGGAGTATTTCA 59.791 38.462 0.00 0.00 0.00 2.69
154 155 6.434340 AGGCTTAAAAACAGGGAGTATTTCAG 59.566 38.462 0.00 0.00 0.00 3.02
155 156 6.350194 GGCTTAAAAACAGGGAGTATTTCAGG 60.350 42.308 0.00 0.00 0.00 3.86
156 157 6.584185 TTAAAAACAGGGAGTATTTCAGGC 57.416 37.500 0.00 0.00 0.00 4.85
157 158 4.388577 AAAACAGGGAGTATTTCAGGCT 57.611 40.909 0.00 0.00 0.00 4.58
158 159 4.388577 AAACAGGGAGTATTTCAGGCTT 57.611 40.909 0.00 0.00 0.00 4.35
159 160 3.636153 ACAGGGAGTATTTCAGGCTTC 57.364 47.619 0.00 0.00 0.00 3.86
160 161 2.093447 ACAGGGAGTATTTCAGGCTTCG 60.093 50.000 0.00 0.00 0.00 3.79
161 162 1.486726 AGGGAGTATTTCAGGCTTCGG 59.513 52.381 0.00 0.00 0.00 4.30
162 163 1.475213 GGGAGTATTTCAGGCTTCGGG 60.475 57.143 0.00 0.00 0.00 5.14
163 164 1.300481 GAGTATTTCAGGCTTCGGGC 58.700 55.000 0.00 0.00 41.18 6.13
180 181 4.033776 CCGGGCTTGGGCTTGAGA 62.034 66.667 0.00 0.00 38.73 3.27
181 182 2.034066 CGGGCTTGGGCTTGAGAA 59.966 61.111 0.00 0.00 38.73 2.87
182 183 1.603455 CGGGCTTGGGCTTGAGAAA 60.603 57.895 0.00 0.00 38.73 2.52
183 184 0.967380 CGGGCTTGGGCTTGAGAAAT 60.967 55.000 0.00 0.00 38.73 2.17
184 185 0.533951 GGGCTTGGGCTTGAGAAATG 59.466 55.000 0.00 0.00 38.73 2.32
185 186 1.549203 GGCTTGGGCTTGAGAAATGA 58.451 50.000 0.00 0.00 38.73 2.57
186 187 1.895131 GGCTTGGGCTTGAGAAATGAA 59.105 47.619 0.00 0.00 38.73 2.57
187 188 2.094338 GGCTTGGGCTTGAGAAATGAAG 60.094 50.000 0.00 0.00 38.73 3.02
188 189 2.094338 GCTTGGGCTTGAGAAATGAAGG 60.094 50.000 0.00 0.00 35.22 3.46
189 190 2.978156 TGGGCTTGAGAAATGAAGGT 57.022 45.000 0.00 0.00 0.00 3.50
190 191 2.795329 TGGGCTTGAGAAATGAAGGTC 58.205 47.619 0.00 0.00 0.00 3.85
191 192 1.740025 GGGCTTGAGAAATGAAGGTCG 59.260 52.381 0.00 0.00 0.00 4.79
192 193 1.740025 GGCTTGAGAAATGAAGGTCGG 59.260 52.381 0.00 0.00 0.00 4.79
193 194 1.740025 GCTTGAGAAATGAAGGTCGGG 59.260 52.381 0.00 0.00 0.00 5.14
194 195 1.740025 CTTGAGAAATGAAGGTCGGGC 59.260 52.381 0.00 0.00 0.00 6.13
195 196 0.984230 TGAGAAATGAAGGTCGGGCT 59.016 50.000 0.00 0.00 0.00 5.19
196 197 1.351017 TGAGAAATGAAGGTCGGGCTT 59.649 47.619 0.00 0.00 0.00 4.35
197 198 2.224769 TGAGAAATGAAGGTCGGGCTTT 60.225 45.455 0.00 0.00 0.00 3.51
198 199 2.820197 GAGAAATGAAGGTCGGGCTTTT 59.180 45.455 0.00 0.00 0.00 2.27
199 200 4.007659 GAGAAATGAAGGTCGGGCTTTTA 58.992 43.478 0.00 0.00 0.00 1.52
200 201 3.756963 AGAAATGAAGGTCGGGCTTTTAC 59.243 43.478 0.00 0.00 0.00 2.01
201 202 2.871096 ATGAAGGTCGGGCTTTTACA 57.129 45.000 0.00 0.00 0.00 2.41
202 203 2.642154 TGAAGGTCGGGCTTTTACAA 57.358 45.000 0.00 0.00 0.00 2.41
203 204 2.500229 TGAAGGTCGGGCTTTTACAAG 58.500 47.619 0.00 0.00 0.00 3.16
211 212 3.284336 CTTTTACAAGCCCGGCCC 58.716 61.111 5.55 0.00 0.00 5.80
212 213 2.673687 TTTTACAAGCCCGGCCCG 60.674 61.111 5.55 0.00 0.00 6.13
233 234 3.340253 CGACGTTCGCCCGGTTTT 61.340 61.111 0.00 0.00 31.14 2.43
234 235 2.021039 CGACGTTCGCCCGGTTTTA 61.021 57.895 0.00 0.00 31.14 1.52
235 236 1.555741 CGACGTTCGCCCGGTTTTAA 61.556 55.000 0.00 0.00 31.14 1.52
251 252 4.394795 GTTTTAACTACAGCTGATGCGTG 58.605 43.478 23.35 5.83 45.42 5.34
261 262 0.249031 CTGATGCGTGCGTGGATAGA 60.249 55.000 0.00 0.00 0.00 1.98
293 295 7.413767 GGGTCGGATCATACAAAACTTCTAAAC 60.414 40.741 0.00 0.00 0.00 2.01
294 296 7.171434 GTCGGATCATACAAAACTTCTAAACG 58.829 38.462 0.00 0.00 0.00 3.60
392 395 1.600916 GGGAGAAAAGCCGTGCAGT 60.601 57.895 0.00 0.00 0.00 4.40
421 424 1.824329 TTTTTCGAGGGCACGCCAA 60.824 52.632 10.83 0.00 37.98 4.52
422 425 1.384989 TTTTTCGAGGGCACGCCAAA 61.385 50.000 10.83 0.00 37.98 3.28
423 426 1.791103 TTTTCGAGGGCACGCCAAAG 61.791 55.000 10.83 0.00 37.98 2.77
424 427 4.697756 TCGAGGGCACGCCAAAGG 62.698 66.667 10.83 0.00 37.98 3.11
427 430 3.842925 GAGGGCACGCCAAAGGTGA 62.843 63.158 10.83 0.00 37.60 4.02
671 676 1.692173 GGGCATTGGCATTGGCTGAT 61.692 55.000 27.65 3.12 43.71 2.90
766 771 1.600413 CCACGGAAGCAAACAAGAAGC 60.600 52.381 0.00 0.00 0.00 3.86
769 774 1.039856 GGAAGCAAACAAGAAGCCCA 58.960 50.000 0.00 0.00 0.00 5.36
817 826 1.821088 ATATCCCACTCCCCCACTTC 58.179 55.000 0.00 0.00 0.00 3.01
996 1042 4.115199 AATCTCGCCTGCACCCCC 62.115 66.667 0.00 0.00 0.00 5.40
1170 1219 2.590859 GGAGCGGGGTTATTCGGC 60.591 66.667 0.00 0.00 0.00 5.54
1180 1229 1.070786 TTATTCGGCGATGGGGCTC 59.929 57.895 11.76 0.00 39.52 4.70
1186 1235 2.737830 GCGATGGGGCTCTAGGTC 59.262 66.667 0.00 0.00 0.00 3.85
1415 1466 2.568090 CATTTCGGTGCTGTGGGC 59.432 61.111 0.00 0.00 42.22 5.36
1441 1499 0.737367 CGATTCTGCACGCCTCTTCA 60.737 55.000 0.00 0.00 0.00 3.02
1443 1501 0.322975 ATTCTGCACGCCTCTTCACT 59.677 50.000 0.00 0.00 0.00 3.41
1469 1527 8.447053 TGTTTTGATTGCTTAGTTTTTGGTTTC 58.553 29.630 0.00 0.00 0.00 2.78
1470 1528 8.447053 GTTTTGATTGCTTAGTTTTTGGTTTCA 58.553 29.630 0.00 0.00 0.00 2.69
1478 1536 6.761242 GCTTAGTTTTTGGTTTCACCTCAAAT 59.239 34.615 0.00 0.00 39.58 2.32
1508 1566 3.260632 TGATGGGATCGTTCAACAAGAGA 59.739 43.478 0.00 0.00 0.00 3.10
1517 1575 5.130350 TCGTTCAACAAGAGAGGGATTTTT 58.870 37.500 0.00 0.00 0.00 1.94
1568 1626 6.093495 CACATGCCGAGTTAGGAATTCTTAAA 59.907 38.462 11.24 0.00 0.00 1.52
1610 1668 6.073058 TCGCATAATCTTGCTGGACATATTTC 60.073 38.462 0.00 0.00 40.54 2.17
1650 1708 2.701163 ATCTCCGCGGCCTCGATTTC 62.701 60.000 23.51 0.00 39.00 2.17
1654 1712 3.929948 GCGGCCTCGATTTCGCTG 61.930 66.667 15.71 8.27 44.10 5.18
1726 1784 1.136502 GCAAAGAAGAGAGCAACGTCG 60.137 52.381 0.00 0.00 0.00 5.12
1763 1821 2.632377 CTGGTTGCGATATGAGTGGTT 58.368 47.619 0.00 0.00 0.00 3.67
1774 1832 6.074249 GCGATATGAGTGGTTAAGCTAGTTTC 60.074 42.308 6.19 0.00 0.00 2.78
1853 1917 6.677781 ATAAATTAACTGCTGCACGTGTAT 57.322 33.333 18.38 0.00 0.00 2.29
1869 1933 5.966335 ACGTGTATTTCGTGTTACTTTCAC 58.034 37.500 0.00 0.00 40.07 3.18
1872 1936 5.844396 GTGTATTTCGTGTTACTTTCACTGC 59.156 40.000 0.00 0.00 34.14 4.40
2041 2105 9.743057 CACTGTACATGAAAATTACCAAGAAAA 57.257 29.630 0.00 0.00 0.00 2.29
2059 2123 1.419381 AAAAATCTTGCACCCGGGTT 58.581 45.000 27.83 5.07 0.00 4.11
2210 2274 4.341806 AGTGTTCATTGGCTGAAATGACAA 59.658 37.500 8.79 0.00 45.27 3.18
2319 2383 7.433708 TTGACAACTTATGTGTAGTTCCATG 57.566 36.000 0.00 0.00 44.12 3.66
2321 2385 7.220740 TGACAACTTATGTGTAGTTCCATGAA 58.779 34.615 0.00 0.00 44.12 2.57
2332 2396 9.241919 TGTGTAGTTCCATGAAATTCACATTAT 57.758 29.630 11.03 0.00 40.69 1.28
2398 2462 4.568152 ATTTGTTCTTGTTCCTGGAACG 57.432 40.909 28.92 18.49 44.55 3.95
2452 2516 4.880696 AGAGGTTAGCTGAAGATTTGCATC 59.119 41.667 0.00 0.00 0.00 3.91
2616 2690 6.867816 TCATTGATGTGTTTGAACCTATTTGC 59.132 34.615 0.00 0.00 0.00 3.68
2662 2736 2.609737 GCCGTATTTGATACTCCCTCCG 60.610 54.545 0.00 0.00 33.59 4.63
2666 2740 1.108776 TTTGATACTCCCTCCGTCCG 58.891 55.000 0.00 0.00 0.00 4.79
2686 2760 4.698304 TCCGAAAACAAGTGTCTCAACTTT 59.302 37.500 0.00 0.00 38.34 2.66
2802 2906 7.327275 GTGAGCTCTGGATAAAGATTACGTATG 59.673 40.741 16.19 0.00 0.00 2.39
2997 3101 9.793259 AGTATTGAAGTCATTTCTTGGTTCTTA 57.207 29.630 0.00 0.00 36.71 2.10
3040 3144 7.517734 CGAAGTACTGCAAAGTAAAAGCTACAA 60.518 37.037 0.74 0.00 0.00 2.41
3095 3199 3.824151 TGATGATTTGTCGTTGCACATG 58.176 40.909 0.00 0.00 0.00 3.21
3480 3584 9.422681 ACTAAGAGTAGTCAAAGGCAGATATAA 57.577 33.333 0.00 0.00 35.55 0.98
3957 4069 6.870971 TGTTTGAGTGGGTTTGTATACTTC 57.129 37.500 4.17 0.00 0.00 3.01
5094 5306 4.018960 ACAACTATCCTGCTCAAAGACCAT 60.019 41.667 0.00 0.00 0.00 3.55
5239 5452 5.293324 TGATGTACGGCAGTTCATGTATTTC 59.707 40.000 13.38 0.57 38.27 2.17
5581 5794 9.433153 CTATCAATGTCACAGCAGATAATATGT 57.567 33.333 0.00 0.00 0.00 2.29
5647 5923 8.762645 AGAGATATGTATGAAGGAACAAGAACA 58.237 33.333 0.00 0.00 0.00 3.18
5689 5965 6.920569 TCTGGTATTAGAAAAATCCTTCGC 57.079 37.500 0.00 0.00 0.00 4.70
5800 6079 4.394300 CCTGAGTTAAGACATGCCTCTTTG 59.606 45.833 4.10 0.00 32.54 2.77
6021 6302 3.826729 GGTAAGACTTGCAAATCCACCTT 59.173 43.478 17.54 4.24 0.00 3.50
6203 6485 1.313772 TGAAAGTAGGCAAAAGCGCA 58.686 45.000 11.47 0.00 0.00 6.09
6254 6537 4.202182 CGAGTGGGAGAACGGGATTATAAA 60.202 45.833 0.00 0.00 0.00 1.40
6299 6582 6.037172 CGCAGCCTACAACTTCAATACTTAAT 59.963 38.462 0.00 0.00 0.00 1.40
6300 6583 7.223971 CGCAGCCTACAACTTCAATACTTAATA 59.776 37.037 0.00 0.00 0.00 0.98
6301 6584 8.889717 GCAGCCTACAACTTCAATACTTAATAA 58.110 33.333 0.00 0.00 0.00 1.40
6330 6613 5.525378 CACATTAGTAGAAAGCATGGAGGTC 59.475 44.000 0.00 0.00 0.00 3.85
6366 6649 3.328382 AGAGCGTTGGCATACTGTTTA 57.672 42.857 0.00 0.00 43.41 2.01
6475 6759 5.872070 AGAGAGATTTTGCTTAACCGAGAAG 59.128 40.000 0.00 0.00 0.00 2.85
6550 6840 5.865013 ACCAAGAAACTTAAACAAAACACCG 59.135 36.000 0.00 0.00 0.00 4.94
6570 6860 3.334691 CGCAATTGAGTCTCCACCTTAA 58.665 45.455 10.34 0.00 0.00 1.85
6574 6864 5.644644 CAATTGAGTCTCCACCTTAAATGC 58.355 41.667 0.00 0.00 0.00 3.56
6631 6921 2.301583 TGTGCACTGCAATGGACTAGTA 59.698 45.455 20.38 0.00 41.47 1.82
6780 7070 5.310451 TCTAGTTGTGGTCAAATTGGTACC 58.690 41.667 4.43 4.43 35.20 3.34
6791 7081 6.537660 GGTCAAATTGGTACCTATGTGTAGAC 59.462 42.308 21.44 14.31 0.00 2.59
6872 7163 4.721132 TGGAATACTTCACGGTTCCTTTT 58.279 39.130 4.81 0.00 40.55 2.27
6904 7195 4.290985 TCAACCCCACCATCTTTCTTGATA 59.709 41.667 0.00 0.00 0.00 2.15
7002 7294 1.033746 AAAGATGCAGTGCCGGATGG 61.034 55.000 13.72 0.00 38.77 3.51
7021 7313 5.473504 GGATGGTTCTCATGTTTACACTTGT 59.526 40.000 0.00 0.00 35.97 3.16
7155 7447 1.453379 CCAGCCAGCAGAGATTGGG 60.453 63.158 0.00 0.00 34.96 4.12
7204 7497 1.284657 ATGATCTCTGCAAGCGAACG 58.715 50.000 0.00 0.00 27.77 3.95
7274 7567 5.106594 TGCAGCTGTTGTACATTGTAGAATG 60.107 40.000 16.64 10.87 44.11 2.67
7325 7629 6.723339 ACAAGTGTCTGTAGAGTAGGACTAT 58.277 40.000 0.00 0.00 0.00 2.12
7326 7630 7.859540 ACAAGTGTCTGTAGAGTAGGACTATA 58.140 38.462 0.00 0.00 0.00 1.31
7327 7631 8.496088 ACAAGTGTCTGTAGAGTAGGACTATAT 58.504 37.037 0.00 0.00 0.00 0.86
7371 7676 2.276201 CGTCTGGTGTTCTTGTGTGAA 58.724 47.619 0.00 0.00 0.00 3.18
7434 7750 2.437281 GAGGAGAAATGGATCTGGCTCA 59.563 50.000 0.00 0.00 0.00 4.26
7455 7803 0.746659 AAACTTGCCAGTGAACAGCC 59.253 50.000 0.00 0.00 31.60 4.85
7481 7829 6.015519 CCCCTTGTTGTGTTCTGAATTTATGA 60.016 38.462 0.00 0.00 0.00 2.15
7499 8054 4.574674 ATGAGGAGCAACAAACATAGGA 57.425 40.909 0.00 0.00 0.00 2.94
7505 8060 4.702131 GGAGCAACAAACATAGGAGAACAT 59.298 41.667 0.00 0.00 0.00 2.71
7508 8063 4.218417 GCAACAAACATAGGAGAACATGGT 59.782 41.667 0.00 0.00 0.00 3.55
7509 8064 5.702865 CAACAAACATAGGAGAACATGGTG 58.297 41.667 0.00 0.00 0.00 4.17
7561 8116 7.501515 CAAGCTTTTGAAACGTTATCCATTTC 58.498 34.615 0.00 0.00 33.75 2.17
7602 8157 8.038944 TGAGTTTTCTAACGCTTCCAAGTATAT 58.961 33.333 0.00 0.00 39.31 0.86
7697 8460 9.161629 ACGAGAATACAACATAATGTCAATGAA 57.838 29.630 0.00 0.00 34.75 2.57
7763 8527 4.071423 TGGTTGTAGTGACATGAACATGG 58.929 43.478 17.25 2.27 42.91 3.66
7765 8529 4.154195 GGTTGTAGTGACATGAACATGGTC 59.846 45.833 17.25 2.98 42.91 4.02
7768 8532 6.353404 TGTAGTGACATGAACATGGTCTAA 57.647 37.500 12.94 0.00 42.91 2.10
7769 8533 6.163476 TGTAGTGACATGAACATGGTCTAAC 58.837 40.000 12.94 3.33 42.91 2.34
7770 8534 5.489792 AGTGACATGAACATGGTCTAACT 57.510 39.130 12.94 5.55 42.91 2.24
7772 8536 7.004555 AGTGACATGAACATGGTCTAACTAA 57.995 36.000 12.94 0.00 42.91 2.24
7773 8537 7.099764 AGTGACATGAACATGGTCTAACTAAG 58.900 38.462 12.94 0.00 42.91 2.18
7774 8538 6.874134 GTGACATGAACATGGTCTAACTAAGT 59.126 38.462 12.94 0.00 42.91 2.24
7777 8541 8.135382 ACATGAACATGGTCTAACTAAGTAGT 57.865 34.615 12.94 0.00 42.91 2.73
7778 8542 9.251440 ACATGAACATGGTCTAACTAAGTAGTA 57.749 33.333 12.94 0.00 42.91 1.82
7779 8543 9.517609 CATGAACATGGTCTAACTAAGTAGTAC 57.482 37.037 12.94 0.00 33.72 2.73
7780 8544 8.874744 TGAACATGGTCTAACTAAGTAGTACT 57.125 34.615 12.94 0.00 34.99 2.73
7781 8545 8.954350 TGAACATGGTCTAACTAAGTAGTACTC 58.046 37.037 12.94 0.00 34.99 2.59
7782 8546 7.878547 ACATGGTCTAACTAAGTAGTACTCC 57.121 40.000 2.58 0.00 34.99 3.85
7783 8547 6.832900 ACATGGTCTAACTAAGTAGTACTCCC 59.167 42.308 2.58 0.00 34.99 4.30
7784 8548 6.649041 TGGTCTAACTAAGTAGTACTCCCT 57.351 41.667 2.58 0.00 34.99 4.20
7785 8549 6.657875 TGGTCTAACTAAGTAGTACTCCCTC 58.342 44.000 2.58 0.00 34.99 4.30
7786 8550 6.061441 GGTCTAACTAAGTAGTACTCCCTCC 58.939 48.000 2.58 0.00 34.99 4.30
7787 8551 5.757808 GTCTAACTAAGTAGTACTCCCTCCG 59.242 48.000 2.58 0.00 34.99 4.63
7788 8552 4.582973 AACTAAGTAGTACTCCCTCCGT 57.417 45.455 2.58 0.00 34.99 4.69
7789 8553 5.700402 AACTAAGTAGTACTCCCTCCGTA 57.300 43.478 2.58 0.00 34.99 4.02
7790 8554 5.700402 ACTAAGTAGTACTCCCTCCGTAA 57.300 43.478 2.58 0.00 34.13 3.18
7791 8555 6.067217 ACTAAGTAGTACTCCCTCCGTAAA 57.933 41.667 2.58 0.00 34.13 2.01
7792 8556 5.883115 ACTAAGTAGTACTCCCTCCGTAAAC 59.117 44.000 2.58 0.00 34.13 2.01
7793 8557 4.582973 AGTAGTACTCCCTCCGTAAACT 57.417 45.455 0.00 0.00 0.00 2.66
7794 8558 5.700402 AGTAGTACTCCCTCCGTAAACTA 57.300 43.478 0.00 0.00 0.00 2.24
7795 8559 6.067217 AGTAGTACTCCCTCCGTAAACTAA 57.933 41.667 0.00 0.00 0.00 2.24
7796 8560 6.667661 AGTAGTACTCCCTCCGTAAACTAAT 58.332 40.000 0.00 0.00 0.00 1.73
7797 8561 7.806180 AGTAGTACTCCCTCCGTAAACTAATA 58.194 38.462 0.00 0.00 0.00 0.98
7798 8562 8.443979 AGTAGTACTCCCTCCGTAAACTAATAT 58.556 37.037 0.00 0.00 0.00 1.28
7799 8563 9.726438 GTAGTACTCCCTCCGTAAACTAATATA 57.274 37.037 0.00 0.00 0.00 0.86
7800 8564 8.860780 AGTACTCCCTCCGTAAACTAATATAG 57.139 38.462 0.00 0.00 0.00 1.31
7801 8565 8.664079 AGTACTCCCTCCGTAAACTAATATAGA 58.336 37.037 0.00 0.00 0.00 1.98
7802 8566 9.289782 GTACTCCCTCCGTAAACTAATATAGAA 57.710 37.037 0.00 0.00 0.00 2.10
7803 8567 8.406730 ACTCCCTCCGTAAACTAATATAGAAG 57.593 38.462 0.00 0.00 0.00 2.85
7804 8568 8.003629 ACTCCCTCCGTAAACTAATATAGAAGT 58.996 37.037 0.00 0.00 0.00 3.01
7805 8569 8.174733 TCCCTCCGTAAACTAATATAGAAGTG 57.825 38.462 0.00 0.00 0.00 3.16
7806 8570 7.781693 TCCCTCCGTAAACTAATATAGAAGTGT 59.218 37.037 0.00 0.00 0.00 3.55
7807 8571 8.419442 CCCTCCGTAAACTAATATAGAAGTGTT 58.581 37.037 0.00 0.00 0.00 3.32
7808 8572 9.813446 CCTCCGTAAACTAATATAGAAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
7831 8595 9.949377 GTTTAGAACACTTAGTAATCTAAACGC 57.051 33.333 27.17 16.64 45.70 4.84
7832 8596 9.918630 TTTAGAACACTTAGTAATCTAAACGCT 57.081 29.630 19.12 0.00 37.55 5.07
7833 8597 9.565213 TTAGAACACTTAGTAATCTAAACGCTC 57.435 33.333 13.25 0.00 35.98 5.03
7834 8598 7.828712 AGAACACTTAGTAATCTAAACGCTCT 58.171 34.615 0.00 0.00 35.98 4.09
7835 8599 8.305317 AGAACACTTAGTAATCTAAACGCTCTT 58.695 33.333 0.00 0.00 35.98 2.85
7836 8600 8.828688 AACACTTAGTAATCTAAACGCTCTTT 57.171 30.769 0.00 0.00 35.98 2.52
7837 8601 8.828688 ACACTTAGTAATCTAAACGCTCTTTT 57.171 30.769 0.00 0.00 35.98 2.27
7838 8602 9.918630 ACACTTAGTAATCTAAACGCTCTTTTA 57.081 29.630 0.00 0.00 35.98 1.52
7870 8634 7.274442 AGTAATTTAAACGCTCTTACAGACG 57.726 36.000 9.96 0.00 0.00 4.18
7871 8635 5.526010 AATTTAAACGCTCTTACAGACGG 57.474 39.130 0.00 0.00 0.00 4.79
7894 8658 4.408276 AGTACCAGTGTATGTGTGTCTCT 58.592 43.478 0.00 0.00 0.00 3.10
7911 8675 4.520874 TGTCTCTCAGTAGCAGTATATGGC 59.479 45.833 0.00 0.00 0.00 4.40
7921 8685 3.452627 AGCAGTATATGGCTATGCTACCC 59.547 47.826 0.00 0.00 44.97 3.69
7922 8686 3.432326 GCAGTATATGGCTATGCTACCCC 60.432 52.174 0.00 0.00 34.10 4.95
7978 8745 1.334054 CTTGCACGAAGCTGCAAATC 58.666 50.000 11.64 0.00 47.00 2.17
8021 8788 2.498167 GGCAGAAGAAAGCTCACTTCA 58.502 47.619 24.56 0.00 43.13 3.02
8063 8830 3.320626 GCTTGTTTTCCTCCAAATGCTC 58.679 45.455 0.00 0.00 0.00 4.26
8065 8832 2.247358 TGTTTTCCTCCAAATGCTCCC 58.753 47.619 0.00 0.00 0.00 4.30
8066 8833 1.550524 GTTTTCCTCCAAATGCTCCCC 59.449 52.381 0.00 0.00 0.00 4.81
8067 8834 0.783206 TTTCCTCCAAATGCTCCCCA 59.217 50.000 0.00 0.00 0.00 4.96
8068 8835 0.332632 TTCCTCCAAATGCTCCCCAG 59.667 55.000 0.00 0.00 0.00 4.45
8096 8885 2.959465 ACCTGTGAAGAGGGGAAAAG 57.041 50.000 0.00 0.00 37.45 2.27
8097 8886 1.425448 ACCTGTGAAGAGGGGAAAAGG 59.575 52.381 0.00 0.00 37.45 3.11
8159 8948 1.303309 GCATTGCTGTAGGTAGCCAG 58.697 55.000 0.16 0.00 43.02 4.85
8176 8965 2.878406 GCCAGATGTGCATTAATACCGT 59.122 45.455 0.00 0.00 0.00 4.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.532196 CCCGGCCCGAAGTATCTTTC 60.532 60.000 3.71 0.00 0.00 2.62
1 2 1.525442 CCCGGCCCGAAGTATCTTT 59.475 57.895 3.71 0.00 0.00 2.52
2 3 3.103091 GCCCGGCCCGAAGTATCTT 62.103 63.158 3.71 0.00 0.00 2.40
3 4 3.547513 GCCCGGCCCGAAGTATCT 61.548 66.667 3.71 0.00 0.00 1.98
4 5 3.516866 GAGCCCGGCCCGAAGTATC 62.517 68.421 3.71 0.00 0.00 2.24
5 6 3.547513 GAGCCCGGCCCGAAGTAT 61.548 66.667 3.71 0.00 0.00 2.12
16 17 1.595093 AAAATTGAAGCCCGAGCCCG 61.595 55.000 0.00 0.00 41.25 6.13
17 18 0.608130 AAAAATTGAAGCCCGAGCCC 59.392 50.000 0.00 0.00 41.25 5.19
18 19 1.546029 AGAAAAATTGAAGCCCGAGCC 59.454 47.619 0.00 0.00 41.25 4.70
19 20 2.029918 ACAGAAAAATTGAAGCCCGAGC 60.030 45.455 0.00 0.00 40.32 5.03
20 21 3.923017 ACAGAAAAATTGAAGCCCGAG 57.077 42.857 0.00 0.00 0.00 4.63
21 22 5.975693 AATACAGAAAAATTGAAGCCCGA 57.024 34.783 0.00 0.00 0.00 5.14
22 23 5.286082 CGAAATACAGAAAAATTGAAGCCCG 59.714 40.000 0.00 0.00 0.00 6.13
23 24 5.576774 CCGAAATACAGAAAAATTGAAGCCC 59.423 40.000 0.00 0.00 0.00 5.19
24 25 6.308041 GTCCGAAATACAGAAAAATTGAAGCC 59.692 38.462 0.00 0.00 0.00 4.35
25 26 6.308041 GGTCCGAAATACAGAAAAATTGAAGC 59.692 38.462 0.00 0.00 0.00 3.86
26 27 6.523201 CGGTCCGAAATACAGAAAAATTGAAG 59.477 38.462 4.91 0.00 0.00 3.02
27 28 6.375377 CGGTCCGAAATACAGAAAAATTGAA 58.625 36.000 4.91 0.00 0.00 2.69
28 29 5.106475 CCGGTCCGAAATACAGAAAAATTGA 60.106 40.000 14.39 0.00 0.00 2.57
29 30 5.092781 CCGGTCCGAAATACAGAAAAATTG 58.907 41.667 14.39 0.00 0.00 2.32
30 31 4.157105 CCCGGTCCGAAATACAGAAAAATT 59.843 41.667 14.39 0.00 0.00 1.82
31 32 3.692593 CCCGGTCCGAAATACAGAAAAAT 59.307 43.478 14.39 0.00 0.00 1.82
32 33 3.075884 CCCGGTCCGAAATACAGAAAAA 58.924 45.455 14.39 0.00 0.00 1.94
33 34 2.702261 CCCGGTCCGAAATACAGAAAA 58.298 47.619 14.39 0.00 0.00 2.29
34 35 1.676615 GCCCGGTCCGAAATACAGAAA 60.677 52.381 14.39 0.00 0.00 2.52
35 36 0.108041 GCCCGGTCCGAAATACAGAA 60.108 55.000 14.39 0.00 0.00 3.02
36 37 0.974010 AGCCCGGTCCGAAATACAGA 60.974 55.000 14.39 0.00 0.00 3.41
37 38 0.107848 AAGCCCGGTCCGAAATACAG 60.108 55.000 14.39 0.00 0.00 2.74
38 39 0.391927 CAAGCCCGGTCCGAAATACA 60.392 55.000 14.39 0.00 0.00 2.29
39 40 1.712018 GCAAGCCCGGTCCGAAATAC 61.712 60.000 14.39 0.00 0.00 1.89
40 41 1.450669 GCAAGCCCGGTCCGAAATA 60.451 57.895 14.39 0.00 0.00 1.40
41 42 2.750237 GCAAGCCCGGTCCGAAAT 60.750 61.111 14.39 0.00 0.00 2.17
42 43 4.257654 TGCAAGCCCGGTCCGAAA 62.258 61.111 14.39 0.00 0.00 3.46
73 74 0.028374 CCGGCTCGAACGTTGTTTTT 59.972 50.000 5.00 0.00 0.00 1.94
74 75 1.644913 CCGGCTCGAACGTTGTTTT 59.355 52.632 5.00 0.00 0.00 2.43
75 76 2.248835 CCCGGCTCGAACGTTGTTT 61.249 57.895 5.00 0.00 0.00 2.83
76 77 2.663852 CCCGGCTCGAACGTTGTT 60.664 61.111 5.00 0.00 0.00 2.83
79 80 3.819877 AAAGCCCGGCTCGAACGTT 62.820 57.895 13.72 0.00 38.25 3.99
80 81 4.309950 AAAGCCCGGCTCGAACGT 62.310 61.111 13.72 0.00 38.25 3.99
81 82 3.488090 GAAAGCCCGGCTCGAACG 61.488 66.667 13.72 2.46 38.25 3.95
82 83 3.488090 CGAAAGCCCGGCTCGAAC 61.488 66.667 13.72 3.87 38.25 3.95
83 84 4.752879 CCGAAAGCCCGGCTCGAA 62.753 66.667 19.70 0.00 43.25 3.71
94 95 2.359975 AAGCCCGAAGCCCGAAAG 60.360 61.111 0.00 0.00 45.47 2.62
95 96 2.478335 ATCAAGCCCGAAGCCCGAAA 62.478 55.000 0.00 0.00 45.47 3.46
96 97 2.478335 AATCAAGCCCGAAGCCCGAA 62.478 55.000 0.00 0.00 45.47 4.30
97 98 2.478335 AAATCAAGCCCGAAGCCCGA 62.478 55.000 0.00 0.00 45.47 5.14
98 99 1.993369 GAAATCAAGCCCGAAGCCCG 61.993 60.000 0.00 0.00 45.47 6.13
99 100 1.809869 GAAATCAAGCCCGAAGCCC 59.190 57.895 0.00 0.00 45.47 5.19
100 101 1.429423 CGAAATCAAGCCCGAAGCC 59.571 57.895 0.00 0.00 45.47 4.35
101 102 1.429423 CCGAAATCAAGCCCGAAGC 59.571 57.895 0.00 0.00 44.25 3.86
102 103 0.392461 TCCCGAAATCAAGCCCGAAG 60.392 55.000 0.00 0.00 0.00 3.79
103 104 0.675522 GTCCCGAAATCAAGCCCGAA 60.676 55.000 0.00 0.00 0.00 4.30
104 105 1.078708 GTCCCGAAATCAAGCCCGA 60.079 57.895 0.00 0.00 0.00 5.14
105 106 2.461110 CGTCCCGAAATCAAGCCCG 61.461 63.158 0.00 0.00 0.00 6.13
106 107 2.112815 CCGTCCCGAAATCAAGCCC 61.113 63.158 0.00 0.00 0.00 5.19
107 108 2.112815 CCCGTCCCGAAATCAAGCC 61.113 63.158 0.00 0.00 0.00 4.35
108 109 2.761195 GCCCGTCCCGAAATCAAGC 61.761 63.158 0.00 0.00 0.00 4.01
109 110 1.078426 AGCCCGTCCCGAAATCAAG 60.078 57.895 0.00 0.00 0.00 3.02
110 111 1.078708 GAGCCCGTCCCGAAATCAA 60.079 57.895 0.00 0.00 0.00 2.57
111 112 2.238847 CTGAGCCCGTCCCGAAATCA 62.239 60.000 0.00 0.00 0.00 2.57
112 113 1.521681 CTGAGCCCGTCCCGAAATC 60.522 63.158 0.00 0.00 0.00 2.17
113 114 2.584608 CTGAGCCCGTCCCGAAAT 59.415 61.111 0.00 0.00 0.00 2.17
114 115 3.702048 CCTGAGCCCGTCCCGAAA 61.702 66.667 0.00 0.00 0.00 3.46
118 119 2.193087 TTTAAGCCTGAGCCCGTCCC 62.193 60.000 0.00 0.00 41.25 4.46
119 120 0.322187 TTTTAAGCCTGAGCCCGTCC 60.322 55.000 0.00 0.00 41.25 4.79
120 121 1.199327 GTTTTTAAGCCTGAGCCCGTC 59.801 52.381 0.00 0.00 41.25 4.79
121 122 1.244816 GTTTTTAAGCCTGAGCCCGT 58.755 50.000 0.00 0.00 41.25 5.28
122 123 1.200020 CTGTTTTTAAGCCTGAGCCCG 59.800 52.381 0.00 0.00 41.25 6.13
123 124 1.546029 CCTGTTTTTAAGCCTGAGCCC 59.454 52.381 0.00 0.00 41.25 5.19
124 125 1.546029 CCCTGTTTTTAAGCCTGAGCC 59.454 52.381 0.00 0.00 41.25 4.70
125 126 2.489722 CTCCCTGTTTTTAAGCCTGAGC 59.510 50.000 0.00 0.00 40.32 4.26
126 127 3.756117 ACTCCCTGTTTTTAAGCCTGAG 58.244 45.455 0.00 0.00 0.00 3.35
127 128 3.876309 ACTCCCTGTTTTTAAGCCTGA 57.124 42.857 0.00 0.00 0.00 3.86
128 129 6.208599 TGAAATACTCCCTGTTTTTAAGCCTG 59.791 38.462 0.00 0.00 31.65 4.85
129 130 6.311735 TGAAATACTCCCTGTTTTTAAGCCT 58.688 36.000 0.00 0.00 31.65 4.58
130 131 6.350194 CCTGAAATACTCCCTGTTTTTAAGCC 60.350 42.308 0.00 0.00 31.02 4.35
131 132 6.621613 CCTGAAATACTCCCTGTTTTTAAGC 58.378 40.000 0.00 0.00 31.02 3.09
132 133 6.434340 AGCCTGAAATACTCCCTGTTTTTAAG 59.566 38.462 0.00 0.00 31.65 1.85
133 134 6.311735 AGCCTGAAATACTCCCTGTTTTTAA 58.688 36.000 0.00 0.00 31.65 1.52
134 135 5.887754 AGCCTGAAATACTCCCTGTTTTTA 58.112 37.500 0.00 0.00 31.65 1.52
135 136 4.740902 AGCCTGAAATACTCCCTGTTTTT 58.259 39.130 0.00 0.00 33.61 1.94
136 137 4.388577 AGCCTGAAATACTCCCTGTTTT 57.611 40.909 0.00 0.00 0.00 2.43
137 138 4.336280 GAAGCCTGAAATACTCCCTGTTT 58.664 43.478 0.00 0.00 0.00 2.83
138 139 3.619979 CGAAGCCTGAAATACTCCCTGTT 60.620 47.826 0.00 0.00 0.00 3.16
139 140 2.093447 CGAAGCCTGAAATACTCCCTGT 60.093 50.000 0.00 0.00 0.00 4.00
140 141 2.555199 CGAAGCCTGAAATACTCCCTG 58.445 52.381 0.00 0.00 0.00 4.45
141 142 1.486726 CCGAAGCCTGAAATACTCCCT 59.513 52.381 0.00 0.00 0.00 4.20
142 143 1.475213 CCCGAAGCCTGAAATACTCCC 60.475 57.143 0.00 0.00 0.00 4.30
143 144 1.954927 CCCGAAGCCTGAAATACTCC 58.045 55.000 0.00 0.00 0.00 3.85
144 145 1.300481 GCCCGAAGCCTGAAATACTC 58.700 55.000 0.00 0.00 34.35 2.59
145 146 3.478540 GCCCGAAGCCTGAAATACT 57.521 52.632 0.00 0.00 34.35 2.12
163 164 3.567579 TTCTCAAGCCCAAGCCCGG 62.568 63.158 0.00 0.00 41.25 5.73
164 165 0.967380 ATTTCTCAAGCCCAAGCCCG 60.967 55.000 0.00 0.00 41.25 6.13
165 166 0.533951 CATTTCTCAAGCCCAAGCCC 59.466 55.000 0.00 0.00 41.25 5.19
166 167 1.549203 TCATTTCTCAAGCCCAAGCC 58.451 50.000 0.00 0.00 41.25 4.35
167 168 2.094338 CCTTCATTTCTCAAGCCCAAGC 60.094 50.000 0.00 0.00 40.32 4.01
168 169 3.160269 ACCTTCATTTCTCAAGCCCAAG 58.840 45.455 0.00 0.00 0.00 3.61
169 170 3.157087 GACCTTCATTTCTCAAGCCCAA 58.843 45.455 0.00 0.00 0.00 4.12
170 171 2.795329 GACCTTCATTTCTCAAGCCCA 58.205 47.619 0.00 0.00 0.00 5.36
171 172 1.740025 CGACCTTCATTTCTCAAGCCC 59.260 52.381 0.00 0.00 0.00 5.19
172 173 1.740025 CCGACCTTCATTTCTCAAGCC 59.260 52.381 0.00 0.00 0.00 4.35
173 174 1.740025 CCCGACCTTCATTTCTCAAGC 59.260 52.381 0.00 0.00 0.00 4.01
174 175 1.740025 GCCCGACCTTCATTTCTCAAG 59.260 52.381 0.00 0.00 0.00 3.02
175 176 1.351017 AGCCCGACCTTCATTTCTCAA 59.649 47.619 0.00 0.00 0.00 3.02
176 177 0.984230 AGCCCGACCTTCATTTCTCA 59.016 50.000 0.00 0.00 0.00 3.27
177 178 2.115343 AAGCCCGACCTTCATTTCTC 57.885 50.000 0.00 0.00 0.00 2.87
178 179 2.586648 AAAGCCCGACCTTCATTTCT 57.413 45.000 0.00 0.00 0.00 2.52
179 180 3.504520 TGTAAAAGCCCGACCTTCATTTC 59.495 43.478 0.00 0.00 0.00 2.17
180 181 3.492337 TGTAAAAGCCCGACCTTCATTT 58.508 40.909 0.00 0.00 0.00 2.32
181 182 3.149005 TGTAAAAGCCCGACCTTCATT 57.851 42.857 0.00 0.00 0.00 2.57
182 183 2.871096 TGTAAAAGCCCGACCTTCAT 57.129 45.000 0.00 0.00 0.00 2.57
183 184 2.500229 CTTGTAAAAGCCCGACCTTCA 58.500 47.619 0.00 0.00 0.00 3.02
184 185 1.199327 GCTTGTAAAAGCCCGACCTTC 59.801 52.381 6.34 0.00 39.81 3.46
185 186 1.244816 GCTTGTAAAAGCCCGACCTT 58.755 50.000 6.34 0.00 39.81 3.50
186 187 2.942641 GCTTGTAAAAGCCCGACCT 58.057 52.632 6.34 0.00 39.81 3.85
193 194 2.571757 GGCCGGGCTTGTAAAAGC 59.428 61.111 22.87 9.32 44.76 3.51
194 195 2.696759 CGGGCCGGGCTTGTAAAAG 61.697 63.158 28.80 5.53 0.00 2.27
195 196 2.673687 CGGGCCGGGCTTGTAAAA 60.674 61.111 28.80 0.00 0.00 1.52
196 197 4.726304 CCGGGCCGGGCTTGTAAA 62.726 66.667 37.27 0.00 44.15 2.01
216 217 1.555741 TTAAAACCGGGCGAACGTCG 61.556 55.000 6.32 0.00 43.89 5.12
217 218 0.110688 GTTAAAACCGGGCGAACGTC 60.111 55.000 6.32 0.00 0.00 4.34
218 219 0.532640 AGTTAAAACCGGGCGAACGT 60.533 50.000 6.32 0.00 0.00 3.99
219 220 1.126662 GTAGTTAAAACCGGGCGAACG 59.873 52.381 6.32 0.00 0.00 3.95
220 221 2.142319 TGTAGTTAAAACCGGGCGAAC 58.858 47.619 6.32 4.47 0.00 3.95
221 222 2.415776 CTGTAGTTAAAACCGGGCGAA 58.584 47.619 6.32 0.00 0.00 4.70
222 223 1.940752 GCTGTAGTTAAAACCGGGCGA 60.941 52.381 6.32 0.00 0.00 5.54
223 224 0.445043 GCTGTAGTTAAAACCGGGCG 59.555 55.000 6.32 0.00 0.00 6.13
224 225 1.467342 CAGCTGTAGTTAAAACCGGGC 59.533 52.381 6.32 0.00 0.00 6.13
225 226 3.048337 TCAGCTGTAGTTAAAACCGGG 57.952 47.619 14.67 0.00 0.00 5.73
226 227 3.181510 GCATCAGCTGTAGTTAAAACCGG 60.182 47.826 14.67 0.00 37.91 5.28
227 228 3.483574 CGCATCAGCTGTAGTTAAAACCG 60.484 47.826 14.67 1.32 39.10 4.44
228 229 3.435671 ACGCATCAGCTGTAGTTAAAACC 59.564 43.478 14.67 0.00 39.10 3.27
229 230 4.394795 CACGCATCAGCTGTAGTTAAAAC 58.605 43.478 14.67 0.00 39.10 2.43
230 231 3.120338 GCACGCATCAGCTGTAGTTAAAA 60.120 43.478 14.67 0.00 39.10 1.52
231 232 2.415168 GCACGCATCAGCTGTAGTTAAA 59.585 45.455 14.67 0.00 39.10 1.52
232 233 1.999735 GCACGCATCAGCTGTAGTTAA 59.000 47.619 14.67 0.00 39.10 2.01
233 234 1.640428 GCACGCATCAGCTGTAGTTA 58.360 50.000 14.67 0.00 39.10 2.24
234 235 1.354337 CGCACGCATCAGCTGTAGTT 61.354 55.000 14.67 0.00 39.10 2.24
235 236 1.807165 CGCACGCATCAGCTGTAGT 60.807 57.895 14.67 6.94 39.10 2.73
261 262 1.030457 GTATGATCCGACCCTCGTGT 58.970 55.000 0.00 0.00 38.40 4.49
293 295 0.686441 TAGGACCATGTGACCCTCCG 60.686 60.000 0.00 0.00 0.00 4.63
294 296 1.580059 TTAGGACCATGTGACCCTCC 58.420 55.000 0.00 0.00 0.00 4.30
414 417 3.302365 AAATCAATCACCTTTGGCGTG 57.698 42.857 0.00 0.00 0.00 5.34
487 492 3.052036 CCGTGACAAATTGCCTTCTTTG 58.948 45.455 0.00 0.00 38.13 2.77
766 771 1.890041 TGTTGACCGACGCTTTGGG 60.890 57.895 0.87 0.00 0.00 4.12
769 774 1.227031 TCGTGTTGACCGACGCTTT 60.227 52.632 0.00 0.00 35.53 3.51
817 826 2.224042 GGGTTTGGGTTTTGCTCAGAAG 60.224 50.000 0.00 0.00 0.00 2.85
1170 1219 1.828660 ACGACCTAGAGCCCCATCG 60.829 63.158 0.00 0.00 35.74 3.84
1180 1229 3.528370 CGCCTCCCCACGACCTAG 61.528 72.222 0.00 0.00 0.00 3.02
1415 1466 1.706301 CGTGCAGAATCGCTGTCAG 59.294 57.895 0.00 0.00 46.62 3.51
1437 1495 7.992180 AAACTAAGCAATCAAAACAGTGAAG 57.008 32.000 0.00 0.00 0.00 3.02
1441 1499 7.102993 ACCAAAAACTAAGCAATCAAAACAGT 58.897 30.769 0.00 0.00 0.00 3.55
1443 1501 7.913674 AACCAAAAACTAAGCAATCAAAACA 57.086 28.000 0.00 0.00 0.00 2.83
1508 1566 4.561326 CGGAACAAATCTGCAAAAATCCCT 60.561 41.667 0.00 0.00 0.00 4.20
1517 1575 3.366273 GCTGAATTCGGAACAAATCTGCA 60.366 43.478 18.72 0.00 34.15 4.41
1568 1626 1.605058 CGATCCACGGTCCAACCTCT 61.605 60.000 0.00 0.00 35.66 3.69
1610 1668 2.224378 TGGCCTCAAGTTCACTCTCTTG 60.224 50.000 3.32 0.00 41.36 3.02
1650 1708 0.179240 GCTCGAACAATGACACAGCG 60.179 55.000 0.00 0.00 0.00 5.18
1654 1712 1.461127 GTCCAGCTCGAACAATGACAC 59.539 52.381 0.00 0.00 0.00 3.67
1726 1784 0.456995 CAGCCGTCGGTTTCTCTCTC 60.457 60.000 13.94 0.00 0.00 3.20
1763 1821 9.216117 GGTTTGAACTTAGATGAAACTAGCTTA 57.784 33.333 4.87 0.00 0.00 3.09
1774 1832 4.142730 GCAGAGCTGGTTTGAACTTAGATG 60.143 45.833 0.00 0.00 0.00 2.90
1840 1898 2.907431 ACGAAATACACGTGCAGCA 58.093 47.368 17.22 0.00 42.37 4.41
1853 1917 2.285950 GCGCAGTGAAAGTAACACGAAA 60.286 45.455 0.30 0.00 42.25 3.46
1869 1933 1.394917 GACAATGACTGTTAGGCGCAG 59.605 52.381 10.83 0.00 38.84 5.18
1872 1936 3.261580 TGATGACAATGACTGTTAGGCG 58.738 45.455 0.00 0.00 38.84 5.52
1916 1980 5.569413 GCACCTTCCAAGATATTGTTAACG 58.431 41.667 0.26 0.00 0.00 3.18
2010 2074 6.995686 TGGTAATTTTCATGTACAGTGACACT 59.004 34.615 1.07 1.07 30.52 3.55
2041 2105 0.678950 CAACCCGGGTGCAAGATTTT 59.321 50.000 31.05 4.46 0.00 1.82
2059 2123 1.792757 ATCCAAACCCAGGCTCAGCA 61.793 55.000 0.00 0.00 0.00 4.41
2319 2383 8.385111 CCTGCATGTTGAAATAATGTGAATTTC 58.615 33.333 0.00 2.38 41.60 2.17
2321 2385 7.613585 TCCTGCATGTTGAAATAATGTGAATT 58.386 30.769 0.00 0.00 0.00 2.17
2332 2396 5.308014 AGCGATATATCCTGCATGTTGAAA 58.692 37.500 13.12 0.00 0.00 2.69
2398 2462 6.200100 CAAGAGCTTATCAATCTGAACATGC 58.800 40.000 0.00 0.00 0.00 4.06
2525 2597 2.944349 GTTCCAACGGTAACCAAACAGA 59.056 45.455 0.00 0.00 0.00 3.41
2556 2630 2.939103 GTGGGATGTGAAGAAGAATCCG 59.061 50.000 0.00 0.00 39.66 4.18
2562 2636 5.005740 TGAGATTTGTGGGATGTGAAGAAG 58.994 41.667 0.00 0.00 0.00 2.85
2662 2736 3.621715 AGTTGAGACACTTGTTTTCGGAC 59.378 43.478 0.00 0.00 0.00 4.79
2666 2740 8.662141 TGTACTAAAGTTGAGACACTTGTTTTC 58.338 33.333 0.00 0.00 37.07 2.29
2706 2780 8.785946 GCCACCAAATACTTGTACTAACTTTAA 58.214 33.333 0.00 0.00 0.00 1.52
2707 2781 7.937942 TGCCACCAAATACTTGTACTAACTTTA 59.062 33.333 0.00 0.00 0.00 1.85
2708 2782 6.773685 TGCCACCAAATACTTGTACTAACTTT 59.226 34.615 0.00 0.00 0.00 2.66
2709 2783 6.300703 TGCCACCAAATACTTGTACTAACTT 58.699 36.000 0.00 0.00 0.00 2.66
2997 3101 4.517285 ACTTCGCCAATCATCAACACTAT 58.483 39.130 0.00 0.00 0.00 2.12
3040 3144 8.677300 CATCAATACAAAGTATAGCACTGGTTT 58.323 33.333 0.00 0.00 37.63 3.27
3480 3584 1.613630 AAGCGTCAGATGGGTCCCT 60.614 57.895 10.00 0.00 0.00 4.20
3957 4069 4.488126 TTTCAGTTCGCCATTTCAGAAG 57.512 40.909 0.00 0.00 0.00 2.85
4231 4346 6.737254 AAATCCTTACGTGAAGTTATGTGG 57.263 37.500 0.00 0.00 32.74 4.17
5239 5452 7.857389 ACAACAGCGATGCATAAATAATACAAG 59.143 33.333 0.00 0.00 0.00 3.16
5257 5470 2.357637 TCAGGAAAAAGGAACAACAGCG 59.642 45.455 0.00 0.00 0.00 5.18
5300 5513 0.035820 TTTGGACACCGCCCTGATAC 60.036 55.000 0.00 0.00 0.00 2.24
5525 5738 2.319472 GTTTTGAGCAATCCGCAGAAC 58.681 47.619 0.00 0.00 46.13 3.01
5527 5740 0.516877 CGTTTTGAGCAATCCGCAGA 59.483 50.000 0.00 0.00 46.13 4.26
5530 5743 1.081509 TGCGTTTTGAGCAATCCGC 60.082 52.632 15.55 15.55 42.18 5.54
5581 5794 2.300956 TATTTCCCTGCACTTTGGCA 57.699 45.000 0.00 0.00 42.53 4.92
5647 5923 5.487131 ACCAGAAAAATCTTCCTCTCTAGCT 59.513 40.000 0.00 0.00 0.00 3.32
5689 5965 0.759346 CACCGGATTCTTCTAGGGGG 59.241 60.000 9.46 0.00 0.00 5.40
5800 6079 7.195839 AGAGAATAGCTTTGTTCAGTTTCAC 57.804 36.000 0.00 0.00 0.00 3.18
5956 6235 3.131933 CCTGTCCTCGACATTCTTCAGAT 59.868 47.826 0.00 0.00 41.94 2.90
6021 6302 3.578716 AGCCTTTACTGAGCAGACTAACA 59.421 43.478 4.21 0.00 0.00 2.41
6123 6404 1.745087 CAACACAGTTCAGCAACCACT 59.255 47.619 0.00 0.00 32.22 4.00
6203 6485 5.580022 ACCCTATTTTAGTGCCTGTTTGAT 58.420 37.500 0.00 0.00 0.00 2.57
6254 6537 2.167662 GTTTGGGATCACGGTGGATTT 58.832 47.619 8.50 0.00 0.00 2.17
6299 6582 8.190122 CCATGCTTTCTACTAATGTGCAATTTA 58.810 33.333 0.00 0.00 32.66 1.40
6300 6583 7.037438 CCATGCTTTCTACTAATGTGCAATTT 58.963 34.615 0.00 0.00 32.66 1.82
6301 6584 6.377996 TCCATGCTTTCTACTAATGTGCAATT 59.622 34.615 0.00 0.00 32.66 2.32
6330 6613 6.581542 CCAACGCTCTAGAGTTAATATTACCG 59.418 42.308 20.75 13.26 35.92 4.02
6408 6692 7.972832 ATTCATTTCGTGTTGGTAGACTAAA 57.027 32.000 0.00 0.00 0.00 1.85
6475 6759 5.535030 ACATTCCCAAGAAAAACTGAGGTAC 59.465 40.000 0.00 0.00 35.09 3.34
6523 6812 8.012809 GGTGTTTTGTTTAAGTTTCTTGGTTTG 58.987 33.333 0.00 0.00 0.00 2.93
6550 6840 5.644644 CATTTAAGGTGGAGACTCAATTGC 58.355 41.667 4.53 0.00 0.00 3.56
6816 7107 5.066117 ACAGCTGCTCATCAACAATGAATAG 59.934 40.000 15.27 0.00 43.78 1.73
6872 7163 5.036916 AGATGGTGGGGTTGACTCTTAATA 58.963 41.667 0.00 0.00 0.00 0.98
6904 7195 7.941238 AGCAGATATAGCAGGTTTTATTGATGT 59.059 33.333 2.84 0.00 0.00 3.06
6935 7226 7.489113 CACCAGAAATAAAATGCGCTCTAAAAT 59.511 33.333 9.73 0.00 0.00 1.82
6944 7235 4.433186 TCACCACCAGAAATAAAATGCG 57.567 40.909 0.00 0.00 0.00 4.73
7002 7294 8.138365 TGAAGTACAAGTGTAAACATGAGAAC 57.862 34.615 0.00 0.00 31.52 3.01
7021 7313 2.841215 CCGGACAAACCTGTTGAAGTA 58.159 47.619 0.00 0.00 35.30 2.24
7155 7447 2.607631 AATTGTTGGCAGCCATATGC 57.392 45.000 17.09 6.91 45.74 3.14
7204 7497 4.697514 TGCAGCAACTAGATTCCTATGTC 58.302 43.478 0.00 0.00 0.00 3.06
7325 7629 6.295518 CCTCACAGCTATCAGCCAGATTAATA 60.296 42.308 0.00 0.00 43.77 0.98
7326 7630 5.512749 CCTCACAGCTATCAGCCAGATTAAT 60.513 44.000 0.00 0.00 43.77 1.40
7327 7631 4.202295 CCTCACAGCTATCAGCCAGATTAA 60.202 45.833 0.00 0.00 43.77 1.40
7329 7633 2.104451 CCTCACAGCTATCAGCCAGATT 59.896 50.000 0.00 0.00 43.77 2.40
7371 7676 5.415077 CCGATCTTTATACCGTCTCCTATGT 59.585 44.000 0.00 0.00 0.00 2.29
7413 7721 2.437281 TGAGCCAGATCCATTTCTCCTC 59.563 50.000 0.00 0.00 0.00 3.71
7434 7750 2.418609 GGCTGTTCACTGGCAAGTTTTT 60.419 45.455 0.00 0.00 39.55 1.94
7455 7803 2.065899 TTCAGAACACAACAAGGGGG 57.934 50.000 0.00 0.00 0.00 5.40
7464 7812 5.559770 TGCTCCTCATAAATTCAGAACACA 58.440 37.500 0.00 0.00 0.00 3.72
7481 7829 4.202461 TGTTCTCCTATGTTTGTTGCTCCT 60.202 41.667 0.00 0.00 0.00 3.69
7525 8080 6.399459 CGTTTCAAAAGCTTGCGCAATAAATA 60.399 34.615 25.26 0.00 39.10 1.40
7526 8081 5.612276 CGTTTCAAAAGCTTGCGCAATAAAT 60.612 36.000 25.26 8.06 39.10 1.40
7527 8082 4.317698 CGTTTCAAAAGCTTGCGCAATAAA 60.318 37.500 25.26 12.02 39.10 1.40
7528 8083 3.181377 CGTTTCAAAAGCTTGCGCAATAA 59.819 39.130 25.26 0.56 39.10 1.40
7529 8084 2.723658 CGTTTCAAAAGCTTGCGCAATA 59.276 40.909 25.26 1.47 39.10 1.90
7530 8085 1.522258 CGTTTCAAAAGCTTGCGCAAT 59.478 42.857 25.26 6.90 39.10 3.56
7531 8086 0.919981 CGTTTCAAAAGCTTGCGCAA 59.080 45.000 23.48 23.48 39.10 4.85
7532 8087 0.179150 ACGTTTCAAAAGCTTGCGCA 60.179 45.000 5.66 5.66 39.10 6.09
7548 8103 8.792633 TCAAAAATTCTGAGAAATGGATAACGT 58.207 29.630 0.00 0.00 0.00 3.99
7553 8108 9.871238 CTCAATCAAAAATTCTGAGAAATGGAT 57.129 29.630 0.00 0.00 36.44 3.41
7586 8141 8.639761 ACTGTATTCTATATACTTGGAAGCGTT 58.360 33.333 0.00 0.00 0.00 4.84
7616 8306 8.181573 CAGGTGGTACAATATAAAACACATGTC 58.818 37.037 0.00 0.00 44.16 3.06
7620 8310 6.999272 ACACAGGTGGTACAATATAAAACACA 59.001 34.615 4.24 0.00 44.16 3.72
7655 8418 8.085909 TGTATTCTCGTTGTTTCTACTCAATCA 58.914 33.333 0.00 0.00 0.00 2.57
7697 8460 7.335627 TGTCCGGTTCTTCATGTAGAAAATAT 58.664 34.615 15.43 0.00 36.01 1.28
7698 8461 6.703319 TGTCCGGTTCTTCATGTAGAAAATA 58.297 36.000 15.43 1.07 36.01 1.40
7763 8527 5.757808 CGGAGGGAGTACTACTTAGTTAGAC 59.242 48.000 4.77 0.00 37.73 2.59
7765 8529 5.679601 ACGGAGGGAGTACTACTTAGTTAG 58.320 45.833 4.77 0.00 37.73 2.34
7768 8532 5.700402 TTACGGAGGGAGTACTACTTAGT 57.300 43.478 4.77 4.19 40.24 2.24
7769 8533 6.118852 AGTTTACGGAGGGAGTACTACTTAG 58.881 44.000 4.77 0.00 0.00 2.18
7770 8534 6.067217 AGTTTACGGAGGGAGTACTACTTA 57.933 41.667 4.77 0.00 0.00 2.24
7772 8536 4.582973 AGTTTACGGAGGGAGTACTACT 57.417 45.455 4.77 1.85 0.00 2.57
7773 8537 6.951062 ATTAGTTTACGGAGGGAGTACTAC 57.049 41.667 0.00 0.00 0.00 2.73
7774 8538 9.950496 CTATATTAGTTTACGGAGGGAGTACTA 57.050 37.037 0.00 0.00 0.00 1.82
7777 8541 9.512588 CTTCTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
7778 8542 8.003629 ACTTCTATATTAGTTTACGGAGGGAGT 58.996 37.037 0.00 0.00 0.00 3.85
7779 8543 8.298140 CACTTCTATATTAGTTTACGGAGGGAG 58.702 40.741 0.00 0.00 0.00 4.30
7780 8544 7.781693 ACACTTCTATATTAGTTTACGGAGGGA 59.218 37.037 0.00 0.00 0.00 4.20
7781 8545 7.949434 ACACTTCTATATTAGTTTACGGAGGG 58.051 38.462 0.00 0.00 0.00 4.30
7782 8546 9.813446 AAACACTTCTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30
7805 8569 9.949377 GCGTTTAGATTACTAAGTGTTCTAAAC 57.051 33.333 21.99 21.99 46.48 2.01
7806 8570 9.918630 AGCGTTTAGATTACTAAGTGTTCTAAA 57.081 29.630 9.41 9.41 39.36 1.85
7807 8571 9.565213 GAGCGTTTAGATTACTAAGTGTTCTAA 57.435 33.333 0.00 0.00 39.36 2.10
7808 8572 8.954350 AGAGCGTTTAGATTACTAAGTGTTCTA 58.046 33.333 0.00 0.00 39.36 2.10
7809 8573 7.828712 AGAGCGTTTAGATTACTAAGTGTTCT 58.171 34.615 0.00 0.00 39.36 3.01
7810 8574 8.463456 AAGAGCGTTTAGATTACTAAGTGTTC 57.537 34.615 0.00 0.00 39.36 3.18
7811 8575 8.828688 AAAGAGCGTTTAGATTACTAAGTGTT 57.171 30.769 0.00 0.00 39.36 3.32
7812 8576 8.828688 AAAAGAGCGTTTAGATTACTAAGTGT 57.171 30.769 0.00 0.00 39.36 3.55
7859 8623 7.351780 ATACACTGGTACTCCGTCTGTAAGAG 61.352 46.154 0.00 0.00 36.36 2.85
7860 8624 3.079578 CACTGGTACTCCGTCTGTAAGA 58.920 50.000 0.00 0.00 37.26 2.10
7861 8625 2.818432 ACACTGGTACTCCGTCTGTAAG 59.182 50.000 0.00 0.00 36.30 2.34
7862 8626 2.867624 ACACTGGTACTCCGTCTGTAA 58.132 47.619 0.00 0.00 36.30 2.41
7863 8627 2.574006 ACACTGGTACTCCGTCTGTA 57.426 50.000 0.00 0.00 36.30 2.74
7864 8628 2.574006 TACACTGGTACTCCGTCTGT 57.426 50.000 0.00 0.00 36.30 3.41
7865 8629 2.753452 ACATACACTGGTACTCCGTCTG 59.247 50.000 0.00 0.00 36.30 3.51
7866 8630 2.753452 CACATACACTGGTACTCCGTCT 59.247 50.000 0.00 0.00 36.30 4.18
7867 8631 2.490903 ACACATACACTGGTACTCCGTC 59.509 50.000 0.00 0.00 36.30 4.79
7868 8632 2.230508 CACACATACACTGGTACTCCGT 59.769 50.000 0.00 0.00 36.30 4.69
7869 8633 2.230508 ACACACATACACTGGTACTCCG 59.769 50.000 0.00 0.00 36.30 4.63
7870 8634 3.510360 AGACACACATACACTGGTACTCC 59.490 47.826 0.00 0.00 30.94 3.85
7871 8635 4.459685 AGAGACACACATACACTGGTACTC 59.540 45.833 0.00 0.00 30.94 2.59
7894 8658 5.019470 AGCATAGCCATATACTGCTACTGA 58.981 41.667 7.09 0.00 42.43 3.41
7911 8675 0.532862 CCAACAGCGGGGTAGCATAG 60.533 60.000 0.00 0.00 40.15 2.23
7921 8685 5.235186 CAGAAGAGATTTATACCAACAGCGG 59.765 44.000 0.00 0.00 0.00 5.52
7922 8686 5.235186 CCAGAAGAGATTTATACCAACAGCG 59.765 44.000 0.00 0.00 0.00 5.18
8021 8788 4.979564 CGTATTGATCATCAATCGCAGT 57.020 40.909 16.46 0.00 43.03 4.40
8063 8830 1.079127 CAGGTAGACGTTGCTGGGG 60.079 63.158 0.00 0.00 0.00 4.96
8065 8832 0.317160 TCACAGGTAGACGTTGCTGG 59.683 55.000 0.00 0.00 0.00 4.85
8066 8833 2.061773 CTTCACAGGTAGACGTTGCTG 58.938 52.381 0.00 0.00 0.00 4.41
8067 8834 1.961394 TCTTCACAGGTAGACGTTGCT 59.039 47.619 0.00 0.00 0.00 3.91
8068 8835 2.329379 CTCTTCACAGGTAGACGTTGC 58.671 52.381 0.00 0.00 0.00 4.17
8069 8836 2.352814 CCCTCTTCACAGGTAGACGTTG 60.353 54.545 0.00 0.00 0.00 4.10
8143 8932 2.093500 CACATCTGGCTACCTACAGCAA 60.093 50.000 0.00 0.00 43.67 3.91
8144 8933 1.482182 CACATCTGGCTACCTACAGCA 59.518 52.381 0.00 0.00 43.67 4.41
8148 8937 2.918712 ATGCACATCTGGCTACCTAC 57.081 50.000 0.00 0.00 0.00 3.18
8159 8948 3.961477 TGCACGGTATTAATGCACATC 57.039 42.857 5.87 0.00 44.17 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.