Multiple sequence alignment - TraesCS7D01G239500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G239500 chr7D 100.000 2984 0 0 1 2984 204094790 204091807 0.000000e+00 5511.0
1 TraesCS7D01G239500 chr7D 89.583 144 11 2 2842 2984 457148948 457148808 2.360000e-41 180.0
2 TraesCS7D01G239500 chr7D 88.194 144 13 3 2842 2984 47404407 47404267 5.120000e-38 169.0
3 TraesCS7D01G239500 chr7D 87.413 143 9 7 2842 2981 176162863 176162999 3.980000e-34 156.0
4 TraesCS7D01G239500 chr7A 92.123 1168 63 12 1523 2672 215889109 215887953 0.000000e+00 1620.0
5 TraesCS7D01G239500 chr7A 92.756 704 38 7 832 1526 215889724 215889025 0.000000e+00 1005.0
6 TraesCS7D01G239500 chr7A 90.174 631 35 11 3 623 215890328 215889715 0.000000e+00 797.0
7 TraesCS7D01G239500 chr7A 90.604 149 9 3 2838 2984 130229699 130229554 3.040000e-45 193.0
8 TraesCS7D01G239500 chr7A 88.194 144 13 2 2842 2984 137770552 137770412 5.120000e-38 169.0
9 TraesCS7D01G239500 chr7B 92.029 828 40 13 1540 2364 167750121 167749317 0.000000e+00 1140.0
10 TraesCS7D01G239500 chr7B 87.188 601 36 13 963 1526 167750653 167750057 0.000000e+00 645.0
11 TraesCS7D01G239500 chr7B 85.213 399 32 15 1 390 167751388 167751008 4.670000e-103 385.0
12 TraesCS7D01G239500 chr7B 89.865 148 10 3 832 974 167750825 167750678 5.080000e-43 185.0
13 TraesCS7D01G239500 chr7B 82.251 231 21 12 2614 2843 167717526 167717315 6.570000e-42 182.0
14 TraesCS7D01G239500 chr7B 93.182 88 6 0 2410 2497 167749310 167749223 2.410000e-26 130.0
15 TraesCS7D01G239500 chr7B 90.141 71 7 0 2542 2612 167746183 167746113 3.170000e-15 93.5
16 TraesCS7D01G239500 chr3D 97.630 211 3 2 624 832 554922068 554922278 7.860000e-96 361.0
17 TraesCS7D01G239500 chr3D 95.370 216 8 2 620 833 94437556 94437771 2.850000e-90 342.0
18 TraesCS7D01G239500 chr3D 86.792 159 14 4 2828 2984 603322784 603322631 1.420000e-38 171.0
19 TraesCS7D01G239500 chr6D 97.619 210 4 1 624 832 451070623 451070414 2.830000e-95 359.0
20 TraesCS7D01G239500 chr6D 96.729 214 5 2 624 835 114768407 114768194 3.660000e-94 355.0
21 TraesCS7D01G239500 chr4D 97.619 210 4 1 624 832 92303575 92303784 2.830000e-95 359.0
22 TraesCS7D01G239500 chr1D 96.729 214 5 2 624 835 64209773 64209986 3.660000e-94 355.0
23 TraesCS7D01G239500 chr1D 97.170 212 3 3 623 833 432561598 432561807 3.660000e-94 355.0
24 TraesCS7D01G239500 chr1D 96.279 215 6 2 623 836 488617817 488618030 4.730000e-93 351.0
25 TraesCS7D01G239500 chr2D 94.643 224 11 1 614 836 603126214 603126437 2.200000e-91 346.0
26 TraesCS7D01G239500 chr3B 88.079 151 13 4 2836 2984 14466830 14466977 1.100000e-39 174.0
27 TraesCS7D01G239500 chrUn 88.194 144 13 2 2842 2984 95996573 95996433 5.120000e-38 169.0
28 TraesCS7D01G239500 chr1A 89.051 137 11 3 2842 2977 516570619 516570486 1.840000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G239500 chr7D 204091807 204094790 2983 True 5511.000000 5511 100.000000 1 2984 1 chr7D.!!$R2 2983
1 TraesCS7D01G239500 chr7A 215887953 215890328 2375 True 1140.666667 1620 91.684333 3 2672 3 chr7A.!!$R3 2669
2 TraesCS7D01G239500 chr7B 167746113 167751388 5275 True 429.750000 1140 89.603000 1 2612 6 chr7B.!!$R2 2611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
648 689 0.035915 GACTTGACTGCTCCCTTCCC 60.036 60.0 0.0 0.0 0.0 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2197 2318 0.318275 CGGACTCTAATCAGCGAGGC 60.318 60.0 0.0 0.0 34.48 4.7 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 115 2.032071 GTACCTGGCGCCAACACT 59.968 61.111 32.09 14.85 0.00 3.55
114 128 3.290710 GCCAACACTACCCATGATTCAT 58.709 45.455 0.00 0.00 0.00 2.57
161 175 4.240096 ACTAATGAACAGCAAAGCAATGC 58.760 39.130 0.00 0.00 46.78 3.56
198 213 4.178540 TCGTTGCTAATACTAACAGGCAC 58.821 43.478 0.00 0.00 0.00 5.01
200 215 4.032900 CGTTGCTAATACTAACAGGCACAG 59.967 45.833 0.00 0.00 0.00 3.66
248 263 2.025418 CACTACCAACGTCCGGTGC 61.025 63.158 17.55 0.00 37.33 5.01
333 353 2.159338 GCGTCACAATTGCTGATCCATT 60.159 45.455 5.05 0.00 0.00 3.16
408 428 2.182537 GCAGCCGCTTCCATTTGG 59.817 61.111 0.00 0.00 34.30 3.28
409 429 2.342650 GCAGCCGCTTCCATTTGGA 61.343 57.895 0.00 0.00 43.73 3.53
420 440 2.452505 TCCATTTGGAAATCGGAACCC 58.547 47.619 0.00 0.00 42.18 4.11
421 441 2.042433 TCCATTTGGAAATCGGAACCCT 59.958 45.455 0.00 0.00 42.18 4.34
422 442 2.427095 CCATTTGGAAATCGGAACCCTC 59.573 50.000 0.00 0.00 37.39 4.30
423 443 2.209690 TTTGGAAATCGGAACCCTCC 57.790 50.000 0.00 0.00 38.52 4.30
431 451 4.191015 GGAACCCTCCGGCCATCC 62.191 72.222 2.24 0.00 30.03 3.51
432 452 4.191015 GAACCCTCCGGCCATCCC 62.191 72.222 2.24 0.00 0.00 3.85
445 465 1.263217 GCCATCCCGTACTTAATTGCG 59.737 52.381 0.00 0.00 0.00 4.85
590 631 3.356290 CAACGGGGAGAATCTTTCCAAT 58.644 45.455 6.07 0.00 36.40 3.16
599 640 5.510430 GAGAATCTTTCCAATAACCCAGGT 58.490 41.667 0.00 0.00 0.00 4.00
623 664 9.032420 GGTAGGTAATTCTTCTCGTTCTTATTG 57.968 37.037 0.00 0.00 0.00 1.90
624 665 9.032420 GTAGGTAATTCTTCTCGTTCTTATTGG 57.968 37.037 0.00 0.00 0.00 3.16
625 666 7.848128 AGGTAATTCTTCTCGTTCTTATTGGA 58.152 34.615 0.00 0.00 0.00 3.53
626 667 7.764901 AGGTAATTCTTCTCGTTCTTATTGGAC 59.235 37.037 0.00 0.00 0.00 4.02
627 668 6.648725 AATTCTTCTCGTTCTTATTGGACG 57.351 37.500 0.00 0.00 0.00 4.79
628 669 5.381174 TTCTTCTCGTTCTTATTGGACGA 57.619 39.130 0.00 0.00 0.00 4.20
633 674 4.778534 TCGTTCTTATTGGACGAGACTT 57.221 40.909 0.00 0.00 0.00 3.01
634 675 4.482386 TCGTTCTTATTGGACGAGACTTG 58.518 43.478 0.00 0.00 0.00 3.16
635 676 4.216902 TCGTTCTTATTGGACGAGACTTGA 59.783 41.667 0.00 0.00 0.00 3.02
636 677 4.323868 CGTTCTTATTGGACGAGACTTGAC 59.676 45.833 0.00 0.00 0.00 3.18
637 678 5.471257 GTTCTTATTGGACGAGACTTGACT 58.529 41.667 0.00 0.00 0.00 3.41
638 679 5.060662 TCTTATTGGACGAGACTTGACTG 57.939 43.478 0.00 0.00 0.00 3.51
639 680 2.086054 ATTGGACGAGACTTGACTGC 57.914 50.000 0.00 0.00 0.00 4.40
640 681 1.040646 TTGGACGAGACTTGACTGCT 58.959 50.000 0.00 0.00 0.00 4.24
641 682 0.598562 TGGACGAGACTTGACTGCTC 59.401 55.000 0.00 0.00 0.00 4.26
642 683 0.109039 GGACGAGACTTGACTGCTCC 60.109 60.000 0.00 0.00 0.00 4.70
643 684 0.109039 GACGAGACTTGACTGCTCCC 60.109 60.000 0.00 0.00 0.00 4.30
644 685 0.540830 ACGAGACTTGACTGCTCCCT 60.541 55.000 0.00 0.00 0.00 4.20
645 686 0.605589 CGAGACTTGACTGCTCCCTT 59.394 55.000 0.00 0.00 0.00 3.95
646 687 1.403514 CGAGACTTGACTGCTCCCTTC 60.404 57.143 0.00 0.00 0.00 3.46
647 688 0.980423 AGACTTGACTGCTCCCTTCC 59.020 55.000 0.00 0.00 0.00 3.46
648 689 0.035915 GACTTGACTGCTCCCTTCCC 60.036 60.000 0.00 0.00 0.00 3.97
649 690 0.768221 ACTTGACTGCTCCCTTCCCA 60.768 55.000 0.00 0.00 0.00 4.37
650 691 0.622665 CTTGACTGCTCCCTTCCCAT 59.377 55.000 0.00 0.00 0.00 4.00
651 692 0.329261 TTGACTGCTCCCTTCCCATG 59.671 55.000 0.00 0.00 0.00 3.66
652 693 1.452833 GACTGCTCCCTTCCCATGC 60.453 63.158 0.00 0.00 0.00 4.06
653 694 1.919600 GACTGCTCCCTTCCCATGCT 61.920 60.000 0.00 0.00 0.00 3.79
654 695 1.153005 CTGCTCCCTTCCCATGCTC 60.153 63.158 0.00 0.00 0.00 4.26
655 696 2.194326 GCTCCCTTCCCATGCTCC 59.806 66.667 0.00 0.00 0.00 4.70
656 697 2.922234 CTCCCTTCCCATGCTCCC 59.078 66.667 0.00 0.00 0.00 4.30
657 698 2.002977 CTCCCTTCCCATGCTCCCA 61.003 63.158 0.00 0.00 0.00 4.37
658 699 1.309013 TCCCTTCCCATGCTCCCAT 60.309 57.895 0.00 0.00 0.00 4.00
659 700 1.152368 CCCTTCCCATGCTCCCATC 59.848 63.158 0.00 0.00 0.00 3.51
660 701 1.152368 CCTTCCCATGCTCCCATCC 59.848 63.158 0.00 0.00 0.00 3.51
661 702 1.228063 CTTCCCATGCTCCCATCCG 60.228 63.158 0.00 0.00 0.00 4.18
662 703 1.987807 CTTCCCATGCTCCCATCCGT 61.988 60.000 0.00 0.00 0.00 4.69
663 704 2.203252 CCCATGCTCCCATCCGTG 60.203 66.667 0.00 0.00 0.00 4.94
664 705 2.903855 CCATGCTCCCATCCGTGC 60.904 66.667 0.00 0.00 0.00 5.34
665 706 2.191375 CATGCTCCCATCCGTGCT 59.809 61.111 0.00 0.00 0.00 4.40
666 707 1.890979 CATGCTCCCATCCGTGCTC 60.891 63.158 0.00 0.00 0.00 4.26
667 708 3.112205 ATGCTCCCATCCGTGCTCC 62.112 63.158 0.00 0.00 0.00 4.70
668 709 4.554036 GCTCCCATCCGTGCTCCC 62.554 72.222 0.00 0.00 0.00 4.30
669 710 4.227134 CTCCCATCCGTGCTCCCG 62.227 72.222 0.00 0.00 0.00 5.14
679 720 4.830765 TGCTCCCGCATACGTGGC 62.831 66.667 0.00 0.21 42.25 5.01
680 721 4.530857 GCTCCCGCATACGTGGCT 62.531 66.667 11.48 0.00 41.87 4.75
681 722 2.186903 CTCCCGCATACGTGGCTT 59.813 61.111 11.48 0.00 41.87 4.35
682 723 2.125310 TCCCGCATACGTGGCTTG 60.125 61.111 11.48 3.68 41.87 4.01
683 724 2.125310 CCCGCATACGTGGCTTGA 60.125 61.111 11.48 0.00 41.87 3.02
684 725 1.523711 CCCGCATACGTGGCTTGAT 60.524 57.895 11.48 0.00 41.87 2.57
685 726 1.095228 CCCGCATACGTGGCTTGATT 61.095 55.000 11.48 0.00 41.87 2.57
686 727 0.732571 CCGCATACGTGGCTTGATTT 59.267 50.000 11.48 0.00 35.59 2.17
687 728 1.531677 CCGCATACGTGGCTTGATTTG 60.532 52.381 11.48 0.00 35.59 2.32
688 729 1.396648 CGCATACGTGGCTTGATTTGA 59.603 47.619 11.48 0.00 33.53 2.69
689 730 2.032054 CGCATACGTGGCTTGATTTGAT 59.968 45.455 11.48 0.00 33.53 2.57
690 731 3.487376 CGCATACGTGGCTTGATTTGATT 60.487 43.478 11.48 0.00 33.53 2.57
691 732 3.792956 GCATACGTGGCTTGATTTGATTG 59.207 43.478 0.00 0.00 0.00 2.67
692 733 4.353737 CATACGTGGCTTGATTTGATTGG 58.646 43.478 0.00 0.00 0.00 3.16
693 734 2.513753 ACGTGGCTTGATTTGATTGGA 58.486 42.857 0.00 0.00 0.00 3.53
694 735 2.890311 ACGTGGCTTGATTTGATTGGAA 59.110 40.909 0.00 0.00 0.00 3.53
695 736 3.057315 ACGTGGCTTGATTTGATTGGAAG 60.057 43.478 0.00 0.00 0.00 3.46
696 737 3.191162 CGTGGCTTGATTTGATTGGAAGA 59.809 43.478 0.00 0.00 0.00 2.87
697 738 4.321156 CGTGGCTTGATTTGATTGGAAGAA 60.321 41.667 0.00 0.00 0.00 2.52
698 739 5.540911 GTGGCTTGATTTGATTGGAAGAAA 58.459 37.500 0.00 0.00 0.00 2.52
699 740 5.990996 GTGGCTTGATTTGATTGGAAGAAAA 59.009 36.000 0.00 0.00 0.00 2.29
700 741 6.652062 GTGGCTTGATTTGATTGGAAGAAAAT 59.348 34.615 0.00 0.00 0.00 1.82
701 742 7.818930 GTGGCTTGATTTGATTGGAAGAAAATA 59.181 33.333 0.00 0.00 0.00 1.40
702 743 8.373981 TGGCTTGATTTGATTGGAAGAAAATAA 58.626 29.630 0.00 0.00 0.00 1.40
703 744 8.876790 GGCTTGATTTGATTGGAAGAAAATAAG 58.123 33.333 0.00 0.00 0.00 1.73
704 745 8.876790 GCTTGATTTGATTGGAAGAAAATAAGG 58.123 33.333 0.00 0.00 0.00 2.69
705 746 8.776376 TTGATTTGATTGGAAGAAAATAAGGC 57.224 30.769 0.00 0.00 0.00 4.35
706 747 7.330262 TGATTTGATTGGAAGAAAATAAGGCC 58.670 34.615 0.00 0.00 0.00 5.19
707 748 5.675684 TTGATTGGAAGAAAATAAGGCCC 57.324 39.130 0.00 0.00 0.00 5.80
708 749 3.699038 TGATTGGAAGAAAATAAGGCCCG 59.301 43.478 0.00 0.00 0.00 6.13
709 750 2.137810 TGGAAGAAAATAAGGCCCGG 57.862 50.000 0.00 0.00 0.00 5.73
710 751 0.744874 GGAAGAAAATAAGGCCCGGC 59.255 55.000 0.00 0.00 0.00 6.13
723 764 4.293671 CCGGCCCCACCCTTGAAA 62.294 66.667 0.00 0.00 33.26 2.69
724 765 2.203567 CGGCCCCACCCTTGAAAA 60.204 61.111 0.00 0.00 33.26 2.29
725 766 1.609210 CGGCCCCACCCTTGAAAAT 60.609 57.895 0.00 0.00 33.26 1.82
726 767 1.604147 CGGCCCCACCCTTGAAAATC 61.604 60.000 0.00 0.00 33.26 2.17
727 768 0.544120 GGCCCCACCCTTGAAAATCA 60.544 55.000 0.00 0.00 0.00 2.57
728 769 0.897621 GCCCCACCCTTGAAAATCAG 59.102 55.000 0.00 0.00 0.00 2.90
729 770 1.560505 CCCCACCCTTGAAAATCAGG 58.439 55.000 0.00 0.00 0.00 3.86
730 771 1.560505 CCCACCCTTGAAAATCAGGG 58.439 55.000 2.47 2.47 42.66 4.45
738 779 5.334724 CCTTGAAAATCAGGGGAAAGATG 57.665 43.478 0.81 0.00 39.69 2.90
739 780 5.018809 CCTTGAAAATCAGGGGAAAGATGA 58.981 41.667 0.81 0.00 39.69 2.92
740 781 5.659971 CCTTGAAAATCAGGGGAAAGATGAT 59.340 40.000 0.81 0.00 39.69 2.45
741 782 6.155737 CCTTGAAAATCAGGGGAAAGATGATT 59.844 38.462 0.81 0.00 43.64 2.57
742 783 7.342799 CCTTGAAAATCAGGGGAAAGATGATTA 59.657 37.037 0.81 0.00 41.56 1.75
743 784 7.886629 TGAAAATCAGGGGAAAGATGATTAG 57.113 36.000 0.49 0.00 41.56 1.73
744 785 7.642186 TGAAAATCAGGGGAAAGATGATTAGA 58.358 34.615 0.49 0.00 41.56 2.10
745 786 8.284435 TGAAAATCAGGGGAAAGATGATTAGAT 58.716 33.333 0.49 0.00 41.56 1.98
746 787 9.140874 GAAAATCAGGGGAAAGATGATTAGATT 57.859 33.333 0.49 0.00 41.56 2.40
748 789 9.804977 AAATCAGGGGAAAGATGATTAGATTAG 57.195 33.333 0.49 0.00 41.56 1.73
749 790 8.748179 ATCAGGGGAAAGATGATTAGATTAGA 57.252 34.615 0.00 0.00 29.42 2.10
750 791 8.567198 TCAGGGGAAAGATGATTAGATTAGAA 57.433 34.615 0.00 0.00 0.00 2.10
751 792 9.003145 TCAGGGGAAAGATGATTAGATTAGAAA 57.997 33.333 0.00 0.00 0.00 2.52
752 793 9.632638 CAGGGGAAAGATGATTAGATTAGAAAA 57.367 33.333 0.00 0.00 0.00 2.29
753 794 9.859152 AGGGGAAAGATGATTAGATTAGAAAAG 57.141 33.333 0.00 0.00 0.00 2.27
754 795 9.853177 GGGGAAAGATGATTAGATTAGAAAAGA 57.147 33.333 0.00 0.00 0.00 2.52
772 813 8.256611 AGAAAAGAAAAAGGAAAAAGAACAGC 57.743 30.769 0.00 0.00 0.00 4.40
773 814 6.985188 AAAGAAAAAGGAAAAAGAACAGCC 57.015 33.333 0.00 0.00 0.00 4.85
774 815 4.682787 AGAAAAAGGAAAAAGAACAGCCG 58.317 39.130 0.00 0.00 0.00 5.52
775 816 4.159693 AGAAAAAGGAAAAAGAACAGCCGT 59.840 37.500 0.00 0.00 0.00 5.68
776 817 5.358725 AGAAAAAGGAAAAAGAACAGCCGTA 59.641 36.000 0.00 0.00 0.00 4.02
777 818 4.830826 AAAGGAAAAAGAACAGCCGTAG 57.169 40.909 0.00 0.00 0.00 3.51
791 832 3.669354 CGTAGGATGAAGTGGGAGC 57.331 57.895 0.00 0.00 0.00 4.70
792 833 0.824109 CGTAGGATGAAGTGGGAGCA 59.176 55.000 0.00 0.00 0.00 4.26
793 834 1.471676 CGTAGGATGAAGTGGGAGCAC 60.472 57.143 0.00 0.00 0.00 4.40
794 835 0.824109 TAGGATGAAGTGGGAGCACG 59.176 55.000 0.00 0.00 0.00 5.34
795 836 1.450312 GGATGAAGTGGGAGCACGG 60.450 63.158 0.00 0.00 0.00 4.94
796 837 1.596934 GATGAAGTGGGAGCACGGA 59.403 57.895 0.00 0.00 0.00 4.69
797 838 0.179000 GATGAAGTGGGAGCACGGAT 59.821 55.000 0.00 0.00 0.00 4.18
798 839 0.107508 ATGAAGTGGGAGCACGGATG 60.108 55.000 0.00 0.00 0.00 3.51
799 840 1.450312 GAAGTGGGAGCACGGATGG 60.450 63.158 0.00 0.00 0.00 3.51
800 841 2.876368 GAAGTGGGAGCACGGATGGG 62.876 65.000 0.00 0.00 0.00 4.00
801 842 3.399181 GTGGGAGCACGGATGGGA 61.399 66.667 0.00 0.00 0.00 4.37
802 843 3.083349 TGGGAGCACGGATGGGAG 61.083 66.667 0.00 0.00 0.00 4.30
803 844 4.554036 GGGAGCACGGATGGGAGC 62.554 72.222 0.00 0.00 0.00 4.70
804 845 3.785859 GGAGCACGGATGGGAGCA 61.786 66.667 0.00 0.00 0.00 4.26
805 846 2.507944 GAGCACGGATGGGAGCAT 59.492 61.111 0.00 0.00 0.00 3.79
806 847 1.890979 GAGCACGGATGGGAGCATG 60.891 63.158 0.00 0.00 0.00 4.06
807 848 2.903855 GCACGGATGGGAGCATGG 60.904 66.667 0.00 0.00 0.00 3.66
808 849 2.910360 CACGGATGGGAGCATGGA 59.090 61.111 0.00 0.00 0.00 3.41
809 850 1.227764 CACGGATGGGAGCATGGAG 60.228 63.158 0.00 0.00 0.00 3.86
810 851 1.383109 ACGGATGGGAGCATGGAGA 60.383 57.895 0.00 0.00 0.00 3.71
811 852 1.370437 CGGATGGGAGCATGGAGAG 59.630 63.158 0.00 0.00 0.00 3.20
812 853 1.759881 GGATGGGAGCATGGAGAGG 59.240 63.158 0.00 0.00 0.00 3.69
813 854 1.759881 GATGGGAGCATGGAGAGGG 59.240 63.158 0.00 0.00 0.00 4.30
814 855 0.765903 GATGGGAGCATGGAGAGGGA 60.766 60.000 0.00 0.00 0.00 4.20
815 856 0.767446 ATGGGAGCATGGAGAGGGAG 60.767 60.000 0.00 0.00 0.00 4.30
816 857 2.817056 GGGAGCATGGAGAGGGAGC 61.817 68.421 0.00 0.00 0.00 4.70
817 858 2.068821 GGAGCATGGAGAGGGAGCA 61.069 63.158 0.00 0.00 0.00 4.26
818 859 1.446791 GAGCATGGAGAGGGAGCAG 59.553 63.158 0.00 0.00 0.00 4.24
819 860 2.042404 GAGCATGGAGAGGGAGCAGG 62.042 65.000 0.00 0.00 0.00 4.85
820 861 2.509916 CATGGAGAGGGAGCAGGC 59.490 66.667 0.00 0.00 0.00 4.85
821 862 2.041762 ATGGAGAGGGAGCAGGCA 59.958 61.111 0.00 0.00 0.00 4.75
822 863 1.617536 ATGGAGAGGGAGCAGGCAA 60.618 57.895 0.00 0.00 0.00 4.52
823 864 1.633915 ATGGAGAGGGAGCAGGCAAG 61.634 60.000 0.00 0.00 0.00 4.01
824 865 2.124778 GAGAGGGAGCAGGCAAGC 60.125 66.667 0.00 0.00 0.00 4.01
825 866 3.695747 GAGAGGGAGCAGGCAAGCC 62.696 68.421 2.02 2.02 34.23 4.35
829 870 4.496336 GGAGCAGGCAAGCCGGAT 62.496 66.667 15.46 8.74 41.95 4.18
830 871 2.899339 GAGCAGGCAAGCCGGATC 60.899 66.667 15.46 14.32 39.23 3.36
831 872 4.496336 AGCAGGCAAGCCGGATCC 62.496 66.667 15.46 0.00 41.95 3.36
833 874 4.473520 CAGGCAAGCCGGATCCGT 62.474 66.667 31.22 12.64 41.95 4.69
834 875 3.717294 AGGCAAGCCGGATCCGTT 61.717 61.111 31.22 18.10 41.95 4.44
835 876 3.202706 GGCAAGCCGGATCCGTTC 61.203 66.667 31.22 21.97 37.81 3.95
836 877 2.125106 GCAAGCCGGATCCGTTCT 60.125 61.111 31.22 23.74 37.81 3.01
837 878 1.745489 GCAAGCCGGATCCGTTCTT 60.745 57.895 31.22 27.42 37.81 2.52
838 879 0.461339 GCAAGCCGGATCCGTTCTTA 60.461 55.000 31.22 0.00 37.81 2.10
839 880 1.810412 GCAAGCCGGATCCGTTCTTAT 60.810 52.381 31.22 11.84 37.81 1.73
840 881 2.561569 CAAGCCGGATCCGTTCTTATT 58.438 47.619 31.22 13.79 37.81 1.40
878 920 2.360350 ATTGGGCAGCCTGTCGTG 60.360 61.111 12.43 0.00 0.00 4.35
887 929 1.662629 CAGCCTGTCGTGCTTAAGATG 59.337 52.381 6.67 0.00 36.81 2.90
894 936 3.930229 TGTCGTGCTTAAGATGCGTAATT 59.070 39.130 6.67 0.00 0.00 1.40
1022 1105 1.452833 GGTGCATCTCCTCCAAGGC 60.453 63.158 0.00 0.00 34.61 4.35
1144 1227 1.684049 CAGTTCCTCGCCCTCCTCT 60.684 63.158 0.00 0.00 0.00 3.69
1332 1445 3.261216 TGTGCATACGATGGCGCG 61.261 61.111 0.00 0.00 43.19 6.86
1378 1491 2.979197 CTGGAGGAGTTCGACGCGT 61.979 63.158 13.85 13.85 0.00 6.01
1479 1592 4.527583 CCGCAGAGCAGCTCCTCC 62.528 72.222 19.40 6.64 32.17 4.30
1480 1593 3.767806 CGCAGAGCAGCTCCTCCA 61.768 66.667 19.40 0.00 32.17 3.86
1481 1594 2.667418 GCAGAGCAGCTCCTCCAA 59.333 61.111 19.40 0.00 32.17 3.53
1482 1595 1.449956 GCAGAGCAGCTCCTCCAAG 60.450 63.158 19.40 3.77 32.17 3.61
1483 1596 1.221293 CAGAGCAGCTCCTCCAAGG 59.779 63.158 19.40 0.00 36.46 3.61
1484 1597 1.079987 AGAGCAGCTCCTCCAAGGA 59.920 57.895 19.40 0.00 43.43 3.36
1491 1604 3.081554 TCCTCCAAGGAGCAAGCC 58.918 61.111 10.68 0.00 40.06 4.35
1492 1605 2.437359 CCTCCAAGGAGCAAGCCG 60.437 66.667 10.68 0.00 37.67 5.52
1493 1606 3.130160 CTCCAAGGAGCAAGCCGC 61.130 66.667 2.68 0.00 42.91 6.53
1511 1624 4.767255 GACGGCCACAGGGAGCAG 62.767 72.222 2.24 0.00 35.59 4.24
1515 1628 4.704833 GCCACAGGGAGCAGCGAA 62.705 66.667 0.00 0.00 35.59 4.70
1516 1629 2.270205 CCACAGGGAGCAGCGAAT 59.730 61.111 0.00 0.00 35.59 3.34
1517 1630 1.817099 CCACAGGGAGCAGCGAATC 60.817 63.158 0.00 0.00 35.59 2.52
1518 1631 1.817099 CACAGGGAGCAGCGAATCC 60.817 63.158 0.00 0.00 34.64 3.01
1519 1632 2.587194 CAGGGAGCAGCGAATCCG 60.587 66.667 0.00 0.00 36.38 4.18
1520 1633 2.759973 AGGGAGCAGCGAATCCGA 60.760 61.111 0.00 0.00 36.38 4.55
1521 1634 2.186903 GGGAGCAGCGAATCCGAA 59.813 61.111 0.00 0.00 36.38 4.30
1522 1635 2.174319 GGGAGCAGCGAATCCGAAC 61.174 63.158 0.00 0.00 36.38 3.95
1523 1636 2.174319 GGAGCAGCGAATCCGAACC 61.174 63.158 0.00 0.00 38.22 3.62
1524 1637 1.447838 GAGCAGCGAATCCGAACCA 60.448 57.895 0.00 0.00 38.22 3.67
1525 1638 1.424493 GAGCAGCGAATCCGAACCAG 61.424 60.000 0.00 0.00 38.22 4.00
1526 1639 1.447838 GCAGCGAATCCGAACCAGA 60.448 57.895 0.00 0.00 38.22 3.86
1527 1640 1.696832 GCAGCGAATCCGAACCAGAC 61.697 60.000 0.00 0.00 38.22 3.51
1528 1641 1.153823 AGCGAATCCGAACCAGACG 60.154 57.895 0.00 0.00 38.22 4.18
1529 1642 2.799540 GCGAATCCGAACCAGACGC 61.800 63.158 0.00 0.00 38.22 5.19
1530 1643 2.505498 CGAATCCGAACCAGACGCG 61.505 63.158 3.53 3.53 38.22 6.01
1531 1644 1.445582 GAATCCGAACCAGACGCGT 60.446 57.895 13.85 13.85 0.00 6.01
1532 1645 1.411493 GAATCCGAACCAGACGCGTC 61.411 60.000 31.30 31.30 0.00 5.19
1533 1646 2.149803 AATCCGAACCAGACGCGTCA 62.150 55.000 37.85 17.51 0.00 4.35
1534 1647 2.543687 ATCCGAACCAGACGCGTCAG 62.544 60.000 37.85 30.63 0.00 3.51
1535 1648 3.470567 CGAACCAGACGCGTCAGC 61.471 66.667 37.85 20.93 40.74 4.26
1571 1684 4.069232 CTCCACGGAGCAAGGCGA 62.069 66.667 0.00 0.00 35.31 5.54
1891 2004 3.615562 GACGAAGAACGCGTGCTGC 62.616 63.158 23.14 19.48 46.94 5.25
1950 2063 1.519719 GTTGGAGAGGCGAGATGCT 59.480 57.895 0.00 0.00 45.43 3.79
1960 2079 1.880340 CGAGATGCTCCGGAAGTGC 60.880 63.158 5.23 6.39 0.00 4.40
1995 2114 2.009774 CAGGATTAGGCGTCAGTTTGG 58.990 52.381 0.00 0.00 0.00 3.28
2048 2168 6.486253 TTAGAGTGCTTGTGATGTGATTTC 57.514 37.500 0.00 0.00 0.00 2.17
2049 2169 4.392047 AGAGTGCTTGTGATGTGATTTCA 58.608 39.130 0.00 0.00 0.00 2.69
2050 2170 4.454847 AGAGTGCTTGTGATGTGATTTCAG 59.545 41.667 0.00 0.00 0.00 3.02
2051 2171 4.392047 AGTGCTTGTGATGTGATTTCAGA 58.608 39.130 0.00 0.00 0.00 3.27
2052 2172 5.008331 AGTGCTTGTGATGTGATTTCAGAT 58.992 37.500 0.00 0.00 32.05 2.90
2053 2173 5.475909 AGTGCTTGTGATGTGATTTCAGATT 59.524 36.000 0.00 0.00 29.27 2.40
2054 2174 6.015688 AGTGCTTGTGATGTGATTTCAGATTT 60.016 34.615 0.00 0.00 29.27 2.17
2197 2318 8.746922 AATAATGTGCACAAACTAGTGAATTG 57.253 30.769 25.72 0.00 42.05 2.32
2207 2328 2.169352 ACTAGTGAATTGCCTCGCTGAT 59.831 45.455 0.00 0.00 36.82 2.90
2237 2359 4.929808 CCGTGTAAGTAGGATATTGGCATC 59.070 45.833 0.00 0.00 0.00 3.91
2245 2367 5.702670 AGTAGGATATTGGCATCGTTTCATG 59.297 40.000 0.00 0.00 0.00 3.07
2332 2457 9.029368 AGATATACTATGACTAGCATTGCTTCA 57.971 33.333 17.71 15.46 40.44 3.02
2333 2458 9.814899 GATATACTATGACTAGCATTGCTTCAT 57.185 33.333 22.76 22.76 38.89 2.57
2367 2495 4.276678 CCACCATTGTCCATGTCATATGTC 59.723 45.833 1.90 0.00 0.00 3.06
2379 2511 6.014755 CCATGTCATATGTCATAGTCACTCCT 60.015 42.308 13.93 0.00 0.00 3.69
2382 2514 6.040955 TGTCATATGTCATAGTCACTCCTTCC 59.959 42.308 1.90 0.00 0.00 3.46
2385 2517 3.162666 TGTCATAGTCACTCCTTCCGTT 58.837 45.455 0.00 0.00 0.00 4.44
2386 2518 3.056821 TGTCATAGTCACTCCTTCCGTTG 60.057 47.826 0.00 0.00 0.00 4.10
2405 2537 4.666655 CGTTGCAAAATAAGTGTCTCGAGG 60.667 45.833 13.56 0.00 0.00 4.63
2426 2558 5.919272 GGTAGTACCTTCTTTGTTGTCAC 57.081 43.478 12.41 0.00 34.73 3.67
2442 2574 5.417266 TGTTGTCACAATTCTGTTCCAAGAA 59.583 36.000 0.00 0.00 40.36 2.52
2444 2576 5.436175 TGTCACAATTCTGTTCCAAGAAGA 58.564 37.500 0.00 0.00 39.47 2.87
2445 2577 6.064060 TGTCACAATTCTGTTCCAAGAAGAT 58.936 36.000 0.00 0.00 39.47 2.40
2609 5736 5.723492 TTGATCGCAATTGTATCACTCAG 57.277 39.130 19.15 0.00 29.64 3.35
2676 5803 5.819825 GCATTAGTGCCTACTAGCTTTTT 57.180 39.130 0.00 0.00 45.76 1.94
2702 5829 3.394719 GGCTATTAGTGCCTACTTGAGC 58.605 50.000 0.00 0.00 46.38 4.26
2703 5830 3.394719 GCTATTAGTGCCTACTTGAGCC 58.605 50.000 0.00 0.00 38.36 4.70
2704 5831 3.070302 GCTATTAGTGCCTACTTGAGCCT 59.930 47.826 0.00 0.00 38.36 4.58
2705 5832 4.443598 GCTATTAGTGCCTACTTGAGCCTT 60.444 45.833 0.00 0.00 38.36 4.35
2706 5833 4.576330 ATTAGTGCCTACTTGAGCCTTT 57.424 40.909 0.00 0.00 38.36 3.11
2707 5834 2.959465 AGTGCCTACTTGAGCCTTTT 57.041 45.000 0.00 0.00 31.66 2.27
2708 5835 2.784347 AGTGCCTACTTGAGCCTTTTC 58.216 47.619 0.00 0.00 31.66 2.29
2709 5836 1.464997 GTGCCTACTTGAGCCTTTTCG 59.535 52.381 0.00 0.00 0.00 3.46
2710 5837 0.448197 GCCTACTTGAGCCTTTTCGC 59.552 55.000 0.00 0.00 0.00 4.70
2711 5838 1.808411 CCTACTTGAGCCTTTTCGCA 58.192 50.000 0.00 0.00 0.00 5.10
2712 5839 1.464997 CCTACTTGAGCCTTTTCGCAC 59.535 52.381 0.00 0.00 0.00 5.34
2713 5840 1.464997 CTACTTGAGCCTTTTCGCACC 59.535 52.381 0.00 0.00 0.00 5.01
2714 5841 0.179018 ACTTGAGCCTTTTCGCACCT 60.179 50.000 0.00 0.00 0.00 4.00
2715 5842 0.239347 CTTGAGCCTTTTCGCACCTG 59.761 55.000 0.00 0.00 0.00 4.00
2716 5843 0.465460 TTGAGCCTTTTCGCACCTGT 60.465 50.000 0.00 0.00 0.00 4.00
2717 5844 1.165907 TGAGCCTTTTCGCACCTGTG 61.166 55.000 0.00 0.00 0.00 3.66
2728 5855 3.091318 CACCTGTGCTCCATGGATC 57.909 57.895 16.63 12.38 0.00 3.36
2729 5856 0.812811 CACCTGTGCTCCATGGATCG 60.813 60.000 16.63 5.67 0.00 3.69
2730 5857 1.267574 ACCTGTGCTCCATGGATCGT 61.268 55.000 16.63 1.20 0.00 3.73
2731 5858 0.752658 CCTGTGCTCCATGGATCGTA 59.247 55.000 16.63 0.54 0.00 3.43
2732 5859 1.269988 CCTGTGCTCCATGGATCGTAG 60.270 57.143 16.63 12.71 0.00 3.51
2733 5860 1.410517 CTGTGCTCCATGGATCGTAGT 59.589 52.381 16.63 0.00 0.00 2.73
2734 5861 1.831106 TGTGCTCCATGGATCGTAGTT 59.169 47.619 16.63 0.00 0.00 2.24
2735 5862 2.236146 TGTGCTCCATGGATCGTAGTTT 59.764 45.455 16.63 0.00 0.00 2.66
2736 5863 3.270877 GTGCTCCATGGATCGTAGTTTT 58.729 45.455 16.63 0.00 0.00 2.43
2737 5864 3.689649 GTGCTCCATGGATCGTAGTTTTT 59.310 43.478 16.63 0.00 0.00 1.94
2768 5895 6.575162 AAGCAAGAAATGGTATTTCGAAGT 57.425 33.333 0.00 0.00 39.29 3.01
2769 5896 6.575162 AGCAAGAAATGGTATTTCGAAGTT 57.425 33.333 0.00 0.00 38.18 2.66
2770 5897 6.612306 AGCAAGAAATGGTATTTCGAAGTTC 58.388 36.000 0.00 0.00 38.18 3.01
2771 5898 5.800438 GCAAGAAATGGTATTTCGAAGTTCC 59.200 40.000 9.05 9.05 33.86 3.62
2772 5899 6.349363 GCAAGAAATGGTATTTCGAAGTTCCT 60.349 38.462 15.56 0.00 33.86 3.36
2773 5900 7.593825 CAAGAAATGGTATTTCGAAGTTCCTT 58.406 34.615 15.56 8.06 33.86 3.36
2774 5901 7.761038 AGAAATGGTATTTCGAAGTTCCTTT 57.239 32.000 15.56 12.78 33.86 3.11
2775 5902 8.857694 AGAAATGGTATTTCGAAGTTCCTTTA 57.142 30.769 15.56 0.00 33.86 1.85
2776 5903 9.292195 AGAAATGGTATTTCGAAGTTCCTTTAA 57.708 29.630 15.56 0.00 33.86 1.52
2777 5904 9.902196 GAAATGGTATTTCGAAGTTCCTTTAAA 57.098 29.630 15.56 0.00 0.00 1.52
2780 5907 9.855021 ATGGTATTTCGAAGTTCCTTTAAAATG 57.145 29.630 15.56 0.00 0.00 2.32
2781 5908 9.069082 TGGTATTTCGAAGTTCCTTTAAAATGA 57.931 29.630 15.56 0.00 0.00 2.57
2782 5909 9.902196 GGTATTTCGAAGTTCCTTTAAAATGAA 57.098 29.630 8.77 0.00 0.00 2.57
2785 5912 9.981114 ATTTCGAAGTTCCTTTAAAATGAATGT 57.019 25.926 0.00 0.00 0.00 2.71
2786 5913 9.810545 TTTCGAAGTTCCTTTAAAATGAATGTT 57.189 25.926 0.00 2.17 0.00 2.71
2787 5914 8.795786 TCGAAGTTCCTTTAAAATGAATGTTG 57.204 30.769 0.00 1.18 0.00 3.33
2788 5915 8.410141 TCGAAGTTCCTTTAAAATGAATGTTGT 58.590 29.630 0.00 0.00 0.00 3.32
2789 5916 8.690840 CGAAGTTCCTTTAAAATGAATGTTGTC 58.309 33.333 0.00 0.00 0.00 3.18
2790 5917 9.750125 GAAGTTCCTTTAAAATGAATGTTGTCT 57.250 29.630 0.00 0.00 0.00 3.41
2791 5918 9.750125 AAGTTCCTTTAAAATGAATGTTGTCTC 57.250 29.630 3.85 0.00 0.00 3.36
2792 5919 8.912988 AGTTCCTTTAAAATGAATGTTGTCTCA 58.087 29.630 3.85 0.00 0.00 3.27
2793 5920 9.528018 GTTCCTTTAAAATGAATGTTGTCTCAA 57.472 29.630 3.85 0.00 0.00 3.02
2794 5921 9.748708 TTCCTTTAAAATGAATGTTGTCTCAAG 57.251 29.630 0.00 0.00 0.00 3.02
2795 5922 8.912988 TCCTTTAAAATGAATGTTGTCTCAAGT 58.087 29.630 0.00 0.00 0.00 3.16
2803 5930 7.848223 TGAATGTTGTCTCAAGTACATATGG 57.152 36.000 7.80 0.00 31.40 2.74
2804 5931 7.619965 TGAATGTTGTCTCAAGTACATATGGA 58.380 34.615 7.80 0.00 31.40 3.41
2805 5932 8.267183 TGAATGTTGTCTCAAGTACATATGGAT 58.733 33.333 7.80 0.00 31.40 3.41
2806 5933 8.442632 AATGTTGTCTCAAGTACATATGGATG 57.557 34.615 7.80 0.00 39.16 3.51
2808 5935 7.394016 TGTTGTCTCAAGTACATATGGATGTT 58.606 34.615 7.80 0.00 44.18 2.71
2809 5936 7.549134 TGTTGTCTCAAGTACATATGGATGTTC 59.451 37.037 7.80 0.00 44.18 3.18
2810 5937 7.423844 TGTCTCAAGTACATATGGATGTTCT 57.576 36.000 7.80 0.00 44.18 3.01
2811 5938 7.492524 TGTCTCAAGTACATATGGATGTTCTC 58.507 38.462 7.80 0.00 44.18 2.87
2812 5939 6.926272 GTCTCAAGTACATATGGATGTTCTCC 59.074 42.308 7.80 0.00 44.18 3.71
2820 5947 3.890527 GGATGTTCTCCATGCACCT 57.109 52.632 0.00 0.00 44.26 4.00
2821 5948 1.386533 GGATGTTCTCCATGCACCTG 58.613 55.000 0.00 0.00 44.26 4.00
2822 5949 1.340405 GGATGTTCTCCATGCACCTGT 60.340 52.381 0.00 0.00 44.26 4.00
2823 5950 2.092968 GGATGTTCTCCATGCACCTGTA 60.093 50.000 0.00 0.00 44.26 2.74
2824 5951 3.609853 GATGTTCTCCATGCACCTGTAA 58.390 45.455 0.00 0.00 32.56 2.41
2825 5952 3.500448 TGTTCTCCATGCACCTGTAAA 57.500 42.857 0.00 0.00 0.00 2.01
2826 5953 3.826524 TGTTCTCCATGCACCTGTAAAA 58.173 40.909 0.00 0.00 0.00 1.52
2827 5954 4.406456 TGTTCTCCATGCACCTGTAAAAT 58.594 39.130 0.00 0.00 0.00 1.82
2828 5955 4.832266 TGTTCTCCATGCACCTGTAAAATT 59.168 37.500 0.00 0.00 0.00 1.82
2829 5956 5.304101 TGTTCTCCATGCACCTGTAAAATTT 59.696 36.000 0.00 0.00 0.00 1.82
2830 5957 5.643379 TCTCCATGCACCTGTAAAATTTC 57.357 39.130 0.00 0.00 0.00 2.17
2831 5958 5.076182 TCTCCATGCACCTGTAAAATTTCA 58.924 37.500 0.00 0.00 0.00 2.69
2832 5959 5.716228 TCTCCATGCACCTGTAAAATTTCAT 59.284 36.000 0.00 0.00 0.00 2.57
2833 5960 6.211184 TCTCCATGCACCTGTAAAATTTCATT 59.789 34.615 0.00 0.00 0.00 2.57
2834 5961 7.395772 TCTCCATGCACCTGTAAAATTTCATTA 59.604 33.333 0.00 0.00 0.00 1.90
2835 5962 7.901029 TCCATGCACCTGTAAAATTTCATTAA 58.099 30.769 0.00 0.00 0.00 1.40
2836 5963 8.370940 TCCATGCACCTGTAAAATTTCATTAAA 58.629 29.630 0.00 0.00 0.00 1.52
2837 5964 9.165035 CCATGCACCTGTAAAATTTCATTAAAT 57.835 29.630 0.00 0.00 36.87 1.40
2850 5977 9.869757 AAATTTCATTAAATAAAACTCCCTCCG 57.130 29.630 0.00 0.00 34.12 4.63
2851 5978 8.589701 ATTTCATTAAATAAAACTCCCTCCGT 57.410 30.769 0.00 0.00 33.45 4.69
2852 5979 8.411991 TTTCATTAAATAAAACTCCCTCCGTT 57.588 30.769 0.00 0.00 0.00 4.44
2853 5980 7.619964 TCATTAAATAAAACTCCCTCCGTTC 57.380 36.000 0.00 0.00 0.00 3.95
2854 5981 7.399634 TCATTAAATAAAACTCCCTCCGTTCT 58.600 34.615 0.00 0.00 0.00 3.01
2855 5982 7.551617 TCATTAAATAAAACTCCCTCCGTTCTC 59.448 37.037 0.00 0.00 0.00 2.87
2856 5983 5.500546 AAATAAAACTCCCTCCGTTCTCT 57.499 39.130 0.00 0.00 0.00 3.10
2857 5984 6.616237 AAATAAAACTCCCTCCGTTCTCTA 57.384 37.500 0.00 0.00 0.00 2.43
2858 5985 6.616237 AATAAAACTCCCTCCGTTCTCTAA 57.384 37.500 0.00 0.00 0.00 2.10
2859 5986 6.809976 ATAAAACTCCCTCCGTTCTCTAAT 57.190 37.500 0.00 0.00 0.00 1.73
2860 5987 7.909485 ATAAAACTCCCTCCGTTCTCTAATA 57.091 36.000 0.00 0.00 0.00 0.98
2861 5988 6.809976 AAAACTCCCTCCGTTCTCTAATAT 57.190 37.500 0.00 0.00 0.00 1.28
2862 5989 7.909485 AAAACTCCCTCCGTTCTCTAATATA 57.091 36.000 0.00 0.00 0.00 0.86
2863 5990 7.909485 AAACTCCCTCCGTTCTCTAATATAA 57.091 36.000 0.00 0.00 0.00 0.98
2864 5991 7.527568 AACTCCCTCCGTTCTCTAATATAAG 57.472 40.000 0.00 0.00 0.00 1.73
2865 5992 6.850234 ACTCCCTCCGTTCTCTAATATAAGA 58.150 40.000 0.00 0.00 0.00 2.10
2866 5993 6.716173 ACTCCCTCCGTTCTCTAATATAAGAC 59.284 42.308 0.00 0.00 0.00 3.01
2867 5994 6.008960 TCCCTCCGTTCTCTAATATAAGACC 58.991 44.000 0.00 0.00 0.00 3.85
2868 5995 6.011481 CCCTCCGTTCTCTAATATAAGACCT 58.989 44.000 0.00 0.00 0.00 3.85
2869 5996 6.494146 CCCTCCGTTCTCTAATATAAGACCTT 59.506 42.308 0.00 0.00 0.00 3.50
2870 5997 7.309316 CCCTCCGTTCTCTAATATAAGACCTTC 60.309 44.444 0.00 0.00 0.00 3.46
2871 5998 7.449086 CCTCCGTTCTCTAATATAAGACCTTCT 59.551 40.741 0.00 0.00 0.00 2.85
2872 5999 9.504708 CTCCGTTCTCTAATATAAGACCTTCTA 57.495 37.037 0.00 0.00 0.00 2.10
2873 6000 9.504708 TCCGTTCTCTAATATAAGACCTTCTAG 57.495 37.037 0.00 0.00 0.00 2.43
2874 6001 8.732531 CCGTTCTCTAATATAAGACCTTCTAGG 58.267 40.741 0.00 0.00 42.49 3.02
2958 6085 9.863845 TGTGTTTAGATACATACGAATCAAGAA 57.136 29.630 0.00 0.00 0.00 2.52
2964 6091 8.723942 AGATACATACGAATCAAGAAAAAGCT 57.276 30.769 0.00 0.00 0.00 3.74
2965 6092 9.817809 AGATACATACGAATCAAGAAAAAGCTA 57.182 29.630 0.00 0.00 0.00 3.32
2969 6096 9.612620 ACATACGAATCAAGAAAAAGCTAAAAG 57.387 29.630 0.00 0.00 0.00 2.27
2970 6097 9.825972 CATACGAATCAAGAAAAAGCTAAAAGA 57.174 29.630 0.00 0.00 0.00 2.52
2972 6099 8.956617 ACGAATCAAGAAAAAGCTAAAAGATC 57.043 30.769 0.00 0.00 0.00 2.75
2973 6100 8.787852 ACGAATCAAGAAAAAGCTAAAAGATCT 58.212 29.630 0.00 0.00 0.00 2.75
2974 6101 9.617975 CGAATCAAGAAAAAGCTAAAAGATCTT 57.382 29.630 0.88 0.88 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.166459 GGAGAAAAGTTTAGGCATGCCC 59.834 50.000 33.14 17.70 36.58 5.36
94 107 5.436175 TGTATGAATCATGGGTAGTGTTGG 58.564 41.667 5.91 0.00 0.00 3.77
101 115 6.548321 GGGGTTTATGTATGAATCATGGGTA 58.452 40.000 5.91 0.00 0.00 3.69
114 128 2.026169 TGGCATTGTCGGGGTTTATGTA 60.026 45.455 0.00 0.00 0.00 2.29
198 213 2.287788 CCGCATAAATTAGCCTTGGCTG 60.288 50.000 23.03 7.35 0.00 4.85
200 215 1.602920 GCCGCATAAATTAGCCTTGGC 60.603 52.381 2.97 2.97 0.00 4.52
297 317 0.882042 GACGCTACGGACCTATCGGA 60.882 60.000 0.00 0.00 0.00 4.55
314 334 9.585099 TTTAATTAATGGATCAGCAATTGTGAC 57.415 29.630 7.40 5.15 0.00 3.67
350 370 1.137086 GGGCTTCGAGTCAGCAGAATA 59.863 52.381 9.64 0.00 39.21 1.75
420 440 1.111116 TAAGTACGGGATGGCCGGAG 61.111 60.000 5.05 0.00 37.87 4.63
421 441 0.687098 TTAAGTACGGGATGGCCGGA 60.687 55.000 5.05 0.00 37.87 5.14
422 442 0.395312 ATTAAGTACGGGATGGCCGG 59.605 55.000 0.00 0.00 40.16 6.13
423 443 1.871039 CAATTAAGTACGGGATGGCCG 59.129 52.381 0.00 0.00 33.83 6.13
424 444 1.607148 GCAATTAAGTACGGGATGGCC 59.393 52.381 0.00 0.00 0.00 5.36
425 445 1.263217 CGCAATTAAGTACGGGATGGC 59.737 52.381 0.00 0.00 0.00 4.40
426 446 1.871039 CCGCAATTAAGTACGGGATGG 59.129 52.381 6.68 0.00 41.95 3.51
427 447 1.263217 GCCGCAATTAAGTACGGGATG 59.737 52.381 15.76 0.00 45.72 3.51
428 448 1.589803 GCCGCAATTAAGTACGGGAT 58.410 50.000 15.76 0.00 45.72 3.85
429 449 0.462403 GGCCGCAATTAAGTACGGGA 60.462 55.000 15.76 0.00 45.72 5.14
430 450 0.745128 TGGCCGCAATTAAGTACGGG 60.745 55.000 15.76 0.00 45.72 5.28
432 452 3.558418 ACTAATGGCCGCAATTAAGTACG 59.442 43.478 0.00 0.00 0.00 3.67
445 465 2.157738 GATCATGGCTGACTAATGGCC 58.842 52.381 0.00 0.00 45.45 5.36
497 538 0.913205 TTAAGATTAGCACCGGGGCA 59.087 50.000 34.08 12.43 35.83 5.36
498 539 2.152016 GATTAAGATTAGCACCGGGGC 58.848 52.381 24.88 24.88 0.00 5.80
499 540 3.403038 CAGATTAAGATTAGCACCGGGG 58.597 50.000 6.32 0.84 0.00 5.73
505 546 7.188834 CGATTTGTTGCAGATTAAGATTAGCA 58.811 34.615 0.00 0.00 0.00 3.49
590 631 5.361857 CGAGAAGAATTACCTACCTGGGTTA 59.638 44.000 0.00 0.00 40.48 2.85
599 640 8.974238 TCCAATAAGAACGAGAAGAATTACCTA 58.026 33.333 0.00 0.00 0.00 3.08
623 664 0.109039 GGAGCAGTCAAGTCTCGTCC 60.109 60.000 0.00 0.00 0.00 4.79
624 665 0.109039 GGGAGCAGTCAAGTCTCGTC 60.109 60.000 0.00 0.00 0.00 4.20
625 666 0.540830 AGGGAGCAGTCAAGTCTCGT 60.541 55.000 0.00 0.00 0.00 4.18
626 667 0.605589 AAGGGAGCAGTCAAGTCTCG 59.394 55.000 0.00 0.00 0.00 4.04
627 668 1.066502 GGAAGGGAGCAGTCAAGTCTC 60.067 57.143 0.00 0.00 0.00 3.36
628 669 0.980423 GGAAGGGAGCAGTCAAGTCT 59.020 55.000 0.00 0.00 0.00 3.24
629 670 0.035915 GGGAAGGGAGCAGTCAAGTC 60.036 60.000 0.00 0.00 0.00 3.01
630 671 0.768221 TGGGAAGGGAGCAGTCAAGT 60.768 55.000 0.00 0.00 0.00 3.16
631 672 0.622665 ATGGGAAGGGAGCAGTCAAG 59.377 55.000 0.00 0.00 0.00 3.02
632 673 0.329261 CATGGGAAGGGAGCAGTCAA 59.671 55.000 0.00 0.00 0.00 3.18
633 674 1.993653 CATGGGAAGGGAGCAGTCA 59.006 57.895 0.00 0.00 0.00 3.41
634 675 1.452833 GCATGGGAAGGGAGCAGTC 60.453 63.158 0.00 0.00 0.00 3.51
635 676 1.919600 GAGCATGGGAAGGGAGCAGT 61.920 60.000 0.00 0.00 0.00 4.40
636 677 1.153005 GAGCATGGGAAGGGAGCAG 60.153 63.158 0.00 0.00 0.00 4.24
637 678 2.683465 GGAGCATGGGAAGGGAGCA 61.683 63.158 0.00 0.00 0.00 4.26
638 679 2.194326 GGAGCATGGGAAGGGAGC 59.806 66.667 0.00 0.00 0.00 4.70
639 680 1.358830 ATGGGAGCATGGGAAGGGAG 61.359 60.000 0.00 0.00 0.00 4.30
640 681 1.309013 ATGGGAGCATGGGAAGGGA 60.309 57.895 0.00 0.00 0.00 4.20
641 682 1.152368 GATGGGAGCATGGGAAGGG 59.848 63.158 0.00 0.00 0.00 3.95
642 683 1.152368 GGATGGGAGCATGGGAAGG 59.848 63.158 0.00 0.00 0.00 3.46
643 684 1.228063 CGGATGGGAGCATGGGAAG 60.228 63.158 0.00 0.00 0.00 3.46
644 685 2.000701 ACGGATGGGAGCATGGGAA 61.001 57.895 0.00 0.00 0.00 3.97
645 686 2.366837 ACGGATGGGAGCATGGGA 60.367 61.111 0.00 0.00 0.00 4.37
646 687 2.203252 CACGGATGGGAGCATGGG 60.203 66.667 0.00 0.00 0.00 4.00
647 688 2.903855 GCACGGATGGGAGCATGG 60.904 66.667 0.00 0.00 0.00 3.66
648 689 1.890979 GAGCACGGATGGGAGCATG 60.891 63.158 0.00 0.00 0.00 4.06
649 690 2.507944 GAGCACGGATGGGAGCAT 59.492 61.111 0.00 0.00 0.00 3.79
650 691 3.785859 GGAGCACGGATGGGAGCA 61.786 66.667 0.00 0.00 0.00 4.26
651 692 4.554036 GGGAGCACGGATGGGAGC 62.554 72.222 0.00 0.00 0.00 4.70
652 693 4.227134 CGGGAGCACGGATGGGAG 62.227 72.222 0.00 0.00 0.00 4.30
664 705 2.173669 CAAGCCACGTATGCGGGAG 61.174 63.158 7.15 0.00 45.97 4.30
665 706 1.966901 ATCAAGCCACGTATGCGGGA 61.967 55.000 7.15 6.11 45.97 5.14
666 707 1.095228 AATCAAGCCACGTATGCGGG 61.095 55.000 8.39 2.48 43.45 6.13
667 708 0.732571 AAATCAAGCCACGTATGCGG 59.267 50.000 8.39 0.00 43.45 5.69
668 709 1.396648 TCAAATCAAGCCACGTATGCG 59.603 47.619 0.19 0.19 44.93 4.73
669 710 3.698029 ATCAAATCAAGCCACGTATGC 57.302 42.857 1.17 1.17 0.00 3.14
670 711 4.096231 TCCAATCAAATCAAGCCACGTATG 59.904 41.667 0.00 0.00 0.00 2.39
671 712 4.269183 TCCAATCAAATCAAGCCACGTAT 58.731 39.130 0.00 0.00 0.00 3.06
672 713 3.680490 TCCAATCAAATCAAGCCACGTA 58.320 40.909 0.00 0.00 0.00 3.57
673 714 2.513753 TCCAATCAAATCAAGCCACGT 58.486 42.857 0.00 0.00 0.00 4.49
674 715 3.191162 TCTTCCAATCAAATCAAGCCACG 59.809 43.478 0.00 0.00 0.00 4.94
675 716 4.789012 TCTTCCAATCAAATCAAGCCAC 57.211 40.909 0.00 0.00 0.00 5.01
676 717 5.804944 TTTCTTCCAATCAAATCAAGCCA 57.195 34.783 0.00 0.00 0.00 4.75
677 718 8.776376 TTATTTTCTTCCAATCAAATCAAGCC 57.224 30.769 0.00 0.00 0.00 4.35
678 719 8.876790 CCTTATTTTCTTCCAATCAAATCAAGC 58.123 33.333 0.00 0.00 0.00 4.01
679 720 8.876790 GCCTTATTTTCTTCCAATCAAATCAAG 58.123 33.333 0.00 0.00 0.00 3.02
680 721 7.823799 GGCCTTATTTTCTTCCAATCAAATCAA 59.176 33.333 0.00 0.00 0.00 2.57
681 722 7.330262 GGCCTTATTTTCTTCCAATCAAATCA 58.670 34.615 0.00 0.00 0.00 2.57
682 723 6.763135 GGGCCTTATTTTCTTCCAATCAAATC 59.237 38.462 0.84 0.00 0.00 2.17
683 724 6.630188 CGGGCCTTATTTTCTTCCAATCAAAT 60.630 38.462 0.84 0.00 0.00 2.32
684 725 5.337169 CGGGCCTTATTTTCTTCCAATCAAA 60.337 40.000 0.84 0.00 0.00 2.69
685 726 4.159506 CGGGCCTTATTTTCTTCCAATCAA 59.840 41.667 0.84 0.00 0.00 2.57
686 727 3.699038 CGGGCCTTATTTTCTTCCAATCA 59.301 43.478 0.84 0.00 0.00 2.57
687 728 3.068165 CCGGGCCTTATTTTCTTCCAATC 59.932 47.826 0.84 0.00 0.00 2.67
688 729 3.031013 CCGGGCCTTATTTTCTTCCAAT 58.969 45.455 0.84 0.00 0.00 3.16
689 730 2.452505 CCGGGCCTTATTTTCTTCCAA 58.547 47.619 0.84 0.00 0.00 3.53
690 731 1.958069 GCCGGGCCTTATTTTCTTCCA 60.958 52.381 8.12 0.00 0.00 3.53
691 732 0.744874 GCCGGGCCTTATTTTCTTCC 59.255 55.000 8.12 0.00 0.00 3.46
692 733 0.744874 GGCCGGGCCTTATTTTCTTC 59.255 55.000 30.86 0.00 46.69 2.87
693 734 2.896278 GGCCGGGCCTTATTTTCTT 58.104 52.632 30.86 0.00 46.69 2.52
694 735 4.678423 GGCCGGGCCTTATTTTCT 57.322 55.556 30.86 0.00 46.69 2.52
706 747 3.819016 TTTTCAAGGGTGGGGCCGG 62.819 63.158 0.00 0.00 38.44 6.13
707 748 1.604147 GATTTTCAAGGGTGGGGCCG 61.604 60.000 0.00 0.00 38.44 6.13
708 749 0.544120 TGATTTTCAAGGGTGGGGCC 60.544 55.000 0.00 0.00 0.00 5.80
709 750 0.897621 CTGATTTTCAAGGGTGGGGC 59.102 55.000 0.00 0.00 0.00 5.80
710 751 1.560505 CCTGATTTTCAAGGGTGGGG 58.439 55.000 0.00 0.00 0.00 4.96
711 752 1.560505 CCCTGATTTTCAAGGGTGGG 58.439 55.000 0.00 0.00 33.17 4.61
712 753 1.077005 TCCCCTGATTTTCAAGGGTGG 59.923 52.381 10.30 0.00 46.17 4.61
713 754 2.603075 TCCCCTGATTTTCAAGGGTG 57.397 50.000 10.30 0.00 46.17 4.61
714 755 3.142028 TCTTTCCCCTGATTTTCAAGGGT 59.858 43.478 10.30 0.00 46.17 4.34
716 757 5.018809 TCATCTTTCCCCTGATTTTCAAGG 58.981 41.667 0.00 0.00 0.00 3.61
717 758 6.786967 ATCATCTTTCCCCTGATTTTCAAG 57.213 37.500 0.00 0.00 0.00 3.02
718 759 8.115384 TCTAATCATCTTTCCCCTGATTTTCAA 58.885 33.333 2.71 0.00 39.60 2.69
719 760 7.642186 TCTAATCATCTTTCCCCTGATTTTCA 58.358 34.615 2.71 0.00 39.60 2.69
720 761 8.703378 ATCTAATCATCTTTCCCCTGATTTTC 57.297 34.615 2.71 0.00 39.60 2.29
722 763 9.804977 CTAATCTAATCATCTTTCCCCTGATTT 57.195 33.333 2.71 0.00 39.60 2.17
723 764 9.175577 TCTAATCTAATCATCTTTCCCCTGATT 57.824 33.333 0.00 0.00 41.28 2.57
724 765 8.748179 TCTAATCTAATCATCTTTCCCCTGAT 57.252 34.615 0.00 0.00 0.00 2.90
725 766 8.567198 TTCTAATCTAATCATCTTTCCCCTGA 57.433 34.615 0.00 0.00 0.00 3.86
726 767 9.632638 TTTTCTAATCTAATCATCTTTCCCCTG 57.367 33.333 0.00 0.00 0.00 4.45
727 768 9.859152 CTTTTCTAATCTAATCATCTTTCCCCT 57.141 33.333 0.00 0.00 0.00 4.79
728 769 9.853177 TCTTTTCTAATCTAATCATCTTTCCCC 57.147 33.333 0.00 0.00 0.00 4.81
746 787 9.366216 GCTGTTCTTTTTCCTTTTTCTTTTCTA 57.634 29.630 0.00 0.00 0.00 2.10
747 788 7.334421 GGCTGTTCTTTTTCCTTTTTCTTTTCT 59.666 33.333 0.00 0.00 0.00 2.52
748 789 7.464358 GGCTGTTCTTTTTCCTTTTTCTTTTC 58.536 34.615 0.00 0.00 0.00 2.29
749 790 6.092122 CGGCTGTTCTTTTTCCTTTTTCTTTT 59.908 34.615 0.00 0.00 0.00 2.27
750 791 5.580691 CGGCTGTTCTTTTTCCTTTTTCTTT 59.419 36.000 0.00 0.00 0.00 2.52
751 792 5.109210 CGGCTGTTCTTTTTCCTTTTTCTT 58.891 37.500 0.00 0.00 0.00 2.52
752 793 4.159693 ACGGCTGTTCTTTTTCCTTTTTCT 59.840 37.500 0.00 0.00 0.00 2.52
753 794 4.430007 ACGGCTGTTCTTTTTCCTTTTTC 58.570 39.130 0.00 0.00 0.00 2.29
754 795 4.465632 ACGGCTGTTCTTTTTCCTTTTT 57.534 36.364 0.00 0.00 0.00 1.94
755 796 4.037565 CCTACGGCTGTTCTTTTTCCTTTT 59.962 41.667 1.99 0.00 0.00 2.27
756 797 3.568430 CCTACGGCTGTTCTTTTTCCTTT 59.432 43.478 1.99 0.00 0.00 3.11
757 798 3.146847 CCTACGGCTGTTCTTTTTCCTT 58.853 45.455 1.99 0.00 0.00 3.36
758 799 2.370849 TCCTACGGCTGTTCTTTTTCCT 59.629 45.455 1.99 0.00 0.00 3.36
759 800 2.774687 TCCTACGGCTGTTCTTTTTCC 58.225 47.619 1.99 0.00 0.00 3.13
760 801 4.000988 TCATCCTACGGCTGTTCTTTTTC 58.999 43.478 1.99 0.00 0.00 2.29
761 802 4.015872 TCATCCTACGGCTGTTCTTTTT 57.984 40.909 1.99 0.00 0.00 1.94
762 803 3.695830 TCATCCTACGGCTGTTCTTTT 57.304 42.857 1.99 0.00 0.00 2.27
763 804 3.008049 ACTTCATCCTACGGCTGTTCTTT 59.992 43.478 1.99 0.00 0.00 2.52
764 805 2.567615 ACTTCATCCTACGGCTGTTCTT 59.432 45.455 1.99 0.00 0.00 2.52
765 806 2.093973 CACTTCATCCTACGGCTGTTCT 60.094 50.000 1.99 0.00 0.00 3.01
766 807 2.271800 CACTTCATCCTACGGCTGTTC 58.728 52.381 1.99 0.00 0.00 3.18
767 808 1.066143 CCACTTCATCCTACGGCTGTT 60.066 52.381 1.99 0.00 0.00 3.16
768 809 0.537188 CCACTTCATCCTACGGCTGT 59.463 55.000 2.42 2.42 0.00 4.40
769 810 0.179073 CCCACTTCATCCTACGGCTG 60.179 60.000 0.00 0.00 0.00 4.85
770 811 0.325296 TCCCACTTCATCCTACGGCT 60.325 55.000 0.00 0.00 0.00 5.52
771 812 0.105039 CTCCCACTTCATCCTACGGC 59.895 60.000 0.00 0.00 0.00 5.68
772 813 0.105039 GCTCCCACTTCATCCTACGG 59.895 60.000 0.00 0.00 0.00 4.02
773 814 0.824109 TGCTCCCACTTCATCCTACG 59.176 55.000 0.00 0.00 0.00 3.51
774 815 1.471676 CGTGCTCCCACTTCATCCTAC 60.472 57.143 0.00 0.00 39.86 3.18
775 816 0.824109 CGTGCTCCCACTTCATCCTA 59.176 55.000 0.00 0.00 39.86 2.94
776 817 1.599047 CGTGCTCCCACTTCATCCT 59.401 57.895 0.00 0.00 39.86 3.24
777 818 1.450312 CCGTGCTCCCACTTCATCC 60.450 63.158 0.00 0.00 39.86 3.51
778 819 0.179000 ATCCGTGCTCCCACTTCATC 59.821 55.000 0.00 0.00 39.86 2.92
779 820 0.107508 CATCCGTGCTCCCACTTCAT 60.108 55.000 0.00 0.00 39.86 2.57
780 821 1.296392 CATCCGTGCTCCCACTTCA 59.704 57.895 0.00 0.00 39.86 3.02
781 822 1.450312 CCATCCGTGCTCCCACTTC 60.450 63.158 0.00 0.00 39.86 3.01
782 823 2.671070 CCATCCGTGCTCCCACTT 59.329 61.111 0.00 0.00 39.86 3.16
783 824 3.402681 CCCATCCGTGCTCCCACT 61.403 66.667 0.00 0.00 39.86 4.00
784 825 3.391665 CTCCCATCCGTGCTCCCAC 62.392 68.421 0.00 0.00 38.62 4.61
785 826 3.083349 CTCCCATCCGTGCTCCCA 61.083 66.667 0.00 0.00 0.00 4.37
786 827 4.554036 GCTCCCATCCGTGCTCCC 62.554 72.222 0.00 0.00 0.00 4.30
787 828 3.112205 ATGCTCCCATCCGTGCTCC 62.112 63.158 0.00 0.00 0.00 4.70
788 829 1.890979 CATGCTCCCATCCGTGCTC 60.891 63.158 0.00 0.00 0.00 4.26
789 830 2.191375 CATGCTCCCATCCGTGCT 59.809 61.111 0.00 0.00 0.00 4.40
790 831 2.903855 CCATGCTCCCATCCGTGC 60.904 66.667 0.00 0.00 0.00 5.34
791 832 1.227764 CTCCATGCTCCCATCCGTG 60.228 63.158 0.00 0.00 0.00 4.94
792 833 1.383109 TCTCCATGCTCCCATCCGT 60.383 57.895 0.00 0.00 0.00 4.69
793 834 1.370437 CTCTCCATGCTCCCATCCG 59.630 63.158 0.00 0.00 0.00 4.18
794 835 1.759881 CCTCTCCATGCTCCCATCC 59.240 63.158 0.00 0.00 0.00 3.51
795 836 0.765903 TCCCTCTCCATGCTCCCATC 60.766 60.000 0.00 0.00 0.00 3.51
796 837 0.767446 CTCCCTCTCCATGCTCCCAT 60.767 60.000 0.00 0.00 0.00 4.00
797 838 1.383664 CTCCCTCTCCATGCTCCCA 60.384 63.158 0.00 0.00 0.00 4.37
798 839 2.817056 GCTCCCTCTCCATGCTCCC 61.817 68.421 0.00 0.00 0.00 4.30
799 840 2.042404 CTGCTCCCTCTCCATGCTCC 62.042 65.000 0.00 0.00 0.00 4.70
800 841 1.446791 CTGCTCCCTCTCCATGCTC 59.553 63.158 0.00 0.00 0.00 4.26
801 842 2.071262 CCTGCTCCCTCTCCATGCT 61.071 63.158 0.00 0.00 0.00 3.79
802 843 2.509916 CCTGCTCCCTCTCCATGC 59.490 66.667 0.00 0.00 0.00 4.06
803 844 1.918467 TTGCCTGCTCCCTCTCCATG 61.918 60.000 0.00 0.00 0.00 3.66
804 845 1.617536 TTGCCTGCTCCCTCTCCAT 60.618 57.895 0.00 0.00 0.00 3.41
805 846 2.203983 TTGCCTGCTCCCTCTCCA 60.204 61.111 0.00 0.00 0.00 3.86
806 847 2.588989 CTTGCCTGCTCCCTCTCC 59.411 66.667 0.00 0.00 0.00 3.71
807 848 2.124778 GCTTGCCTGCTCCCTCTC 60.125 66.667 0.00 0.00 0.00 3.20
808 849 3.726144 GGCTTGCCTGCTCCCTCT 61.726 66.667 4.11 0.00 0.00 3.69
812 853 4.496336 ATCCGGCTTGCCTGCTCC 62.496 66.667 10.12 0.00 0.00 4.70
813 854 2.899339 GATCCGGCTTGCCTGCTC 60.899 66.667 10.12 0.76 0.00 4.26
814 855 4.496336 GGATCCGGCTTGCCTGCT 62.496 66.667 10.12 0.00 0.00 4.24
816 857 3.976701 AACGGATCCGGCTTGCCTG 62.977 63.158 35.87 7.52 44.69 4.85
817 858 3.682292 GAACGGATCCGGCTTGCCT 62.682 63.158 35.87 12.31 44.69 4.75
818 859 3.202706 GAACGGATCCGGCTTGCC 61.203 66.667 35.87 14.99 44.69 4.52
819 860 0.461339 TAAGAACGGATCCGGCTTGC 60.461 55.000 35.26 19.85 44.69 4.01
820 861 2.240493 ATAAGAACGGATCCGGCTTG 57.760 50.000 35.26 15.84 44.69 4.01
821 862 4.283722 AGATAATAAGAACGGATCCGGCTT 59.716 41.667 35.87 34.00 44.69 4.35
822 863 3.833070 AGATAATAAGAACGGATCCGGCT 59.167 43.478 35.87 28.23 44.69 5.52
823 864 4.189639 AGATAATAAGAACGGATCCGGC 57.810 45.455 35.87 26.56 44.69 6.13
824 865 7.993101 TGTATAGATAATAAGAACGGATCCGG 58.007 38.462 35.87 19.10 44.69 5.14
825 866 9.452065 CATGTATAGATAATAAGAACGGATCCG 57.548 37.037 32.20 32.20 46.03 4.18
826 867 9.250624 GCATGTATAGATAATAAGAACGGATCC 57.749 37.037 0.00 0.00 0.00 3.36
829 870 9.856488 GAAGCATGTATAGATAATAAGAACGGA 57.144 33.333 0.00 0.00 0.00 4.69
830 871 9.639601 TGAAGCATGTATAGATAATAAGAACGG 57.360 33.333 0.00 0.00 0.00 4.44
839 880 9.276590 CCAATCAACTGAAGCATGTATAGATAA 57.723 33.333 0.00 0.00 0.00 1.75
840 881 7.879677 CCCAATCAACTGAAGCATGTATAGATA 59.120 37.037 0.00 0.00 0.00 1.98
858 900 1.675310 CGACAGGCTGCCCAATCAA 60.675 57.895 16.57 0.00 0.00 2.57
864 906 3.605749 TAAGCACGACAGGCTGCCC 62.606 63.158 16.57 5.89 41.66 5.36
878 920 4.856487 TGCAAACAATTACGCATCTTAAGC 59.144 37.500 0.00 0.00 0.00 3.09
887 929 4.602957 CGTTTTGTCTGCAAACAATTACGC 60.603 41.667 20.70 5.74 43.47 4.42
894 936 3.266636 TCTCTCGTTTTGTCTGCAAACA 58.733 40.909 0.00 0.00 43.47 2.83
1022 1105 1.595882 CTCCCTGACCTGCTCAGTG 59.404 63.158 1.28 0.00 44.69 3.66
1078 1161 1.118356 ATGATCTCCTCGACCAGGCC 61.118 60.000 0.00 0.00 43.08 5.19
1169 1252 4.421479 CGGCGTCGACCTTGCTCT 62.421 66.667 1.44 0.00 39.00 4.09
1239 1352 2.836020 ACCTTCCGGTGTGTTCTCT 58.164 52.632 0.00 0.00 43.51 3.10
1432 1545 3.112709 GGACGCGTCTGGTTCAGC 61.113 66.667 35.50 15.03 0.00 4.26
1464 1577 1.449956 CTTGGAGGAGCTGCTCTGC 60.450 63.158 30.98 18.00 0.00 4.26
1465 1578 1.221293 CCTTGGAGGAGCTGCTCTG 59.779 63.158 30.98 21.09 37.67 3.35
1466 1579 1.079987 TCCTTGGAGGAGCTGCTCT 59.920 57.895 30.98 14.40 40.06 4.09
1467 1580 3.719121 TCCTTGGAGGAGCTGCTC 58.281 61.111 25.81 25.81 40.06 4.26
1474 1587 2.959484 CGGCTTGCTCCTTGGAGGA 61.959 63.158 17.33 12.46 43.43 3.71
1475 1588 2.437359 CGGCTTGCTCCTTGGAGG 60.437 66.667 17.33 0.00 36.46 4.30
1476 1589 3.130160 GCGGCTTGCTCCTTGGAG 61.130 66.667 12.07 12.07 41.73 3.86
1479 1592 3.793144 GTCGCGGCTTGCTCCTTG 61.793 66.667 1.90 0.00 43.27 3.61
1494 1607 4.767255 CTGCTCCCTGTGGCCGTC 62.767 72.222 0.00 0.00 0.00 4.79
1498 1611 3.984193 ATTCGCTGCTCCCTGTGGC 62.984 63.158 0.00 0.00 0.00 5.01
1499 1612 1.817099 GATTCGCTGCTCCCTGTGG 60.817 63.158 0.00 0.00 0.00 4.17
1500 1613 1.817099 GGATTCGCTGCTCCCTGTG 60.817 63.158 0.00 0.00 0.00 3.66
1501 1614 2.586792 GGATTCGCTGCTCCCTGT 59.413 61.111 0.00 0.00 0.00 4.00
1502 1615 2.578163 TTCGGATTCGCTGCTCCCTG 62.578 60.000 0.00 0.00 36.13 4.45
1503 1616 2.359169 TTCGGATTCGCTGCTCCCT 61.359 57.895 0.00 0.00 36.13 4.20
1504 1617 2.174319 GTTCGGATTCGCTGCTCCC 61.174 63.158 0.00 0.00 36.13 4.30
1505 1618 2.174319 GGTTCGGATTCGCTGCTCC 61.174 63.158 0.00 0.00 36.13 4.70
1506 1619 1.424493 CTGGTTCGGATTCGCTGCTC 61.424 60.000 0.00 0.00 36.13 4.26
1507 1620 1.448540 CTGGTTCGGATTCGCTGCT 60.449 57.895 0.00 0.00 36.13 4.24
1508 1621 1.447838 TCTGGTTCGGATTCGCTGC 60.448 57.895 0.00 0.00 36.13 5.25
1509 1622 1.413767 CGTCTGGTTCGGATTCGCTG 61.414 60.000 0.00 0.00 36.13 5.18
1510 1623 1.153823 CGTCTGGTTCGGATTCGCT 60.154 57.895 0.00 0.00 36.13 4.93
1511 1624 2.799540 GCGTCTGGTTCGGATTCGC 61.800 63.158 0.00 0.00 36.13 4.70
1512 1625 2.505498 CGCGTCTGGTTCGGATTCG 61.505 63.158 0.00 0.00 37.82 3.34
1513 1626 1.411493 GACGCGTCTGGTTCGGATTC 61.411 60.000 31.12 0.44 0.00 2.52
1514 1627 1.445582 GACGCGTCTGGTTCGGATT 60.446 57.895 31.12 0.00 0.00 3.01
1515 1628 2.181021 GACGCGTCTGGTTCGGAT 59.819 61.111 31.12 0.00 0.00 4.18
1516 1629 3.263503 CTGACGCGTCTGGTTCGGA 62.264 63.158 36.27 15.40 0.00 4.55
1517 1630 2.805353 CTGACGCGTCTGGTTCGG 60.805 66.667 36.27 14.00 0.00 4.30
1518 1631 3.470567 GCTGACGCGTCTGGTTCG 61.471 66.667 36.45 20.72 0.00 3.95
1598 1711 3.854669 CAGGCGCCTCCCCTAGTG 61.855 72.222 30.29 10.27 34.51 2.74
1891 2004 1.413077 GATTACCTCCAAGACCTCCCG 59.587 57.143 0.00 0.00 0.00 5.14
1960 2079 2.693762 CCTGCACAATCACCGCCAG 61.694 63.158 0.00 0.00 0.00 4.85
1995 2114 6.346838 GCAACAAAAGCTACCAAAATCATCAC 60.347 38.462 0.00 0.00 0.00 3.06
2165 2286 9.377312 ACTAGTTTGTGCACATTATTTTTGTTT 57.623 25.926 22.39 0.00 0.00 2.83
2166 2287 8.816144 CACTAGTTTGTGCACATTATTTTTGTT 58.184 29.630 22.39 0.59 0.00 2.83
2167 2288 8.194104 TCACTAGTTTGTGCACATTATTTTTGT 58.806 29.630 22.39 9.50 37.81 2.83
2169 2290 9.762933 ATTCACTAGTTTGTGCACATTATTTTT 57.237 25.926 22.39 5.17 37.81 1.94
2173 2294 6.808212 GCAATTCACTAGTTTGTGCACATTAT 59.192 34.615 22.39 11.67 37.81 1.28
2197 2318 0.318275 CGGACTCTAATCAGCGAGGC 60.318 60.000 0.00 0.00 34.48 4.70
2207 2328 7.230108 CCAATATCCTACTTACACGGACTCTAA 59.770 40.741 0.00 0.00 0.00 2.10
2237 2359 0.704551 GCTTTGAAGCGCATGAAACG 59.295 50.000 11.47 0.00 42.88 3.60
2281 2406 2.355818 GGGTCCACCACCTCTATTGTTC 60.356 54.545 0.00 0.00 45.95 3.18
2282 2407 1.633945 GGGTCCACCACCTCTATTGTT 59.366 52.381 0.00 0.00 45.95 2.83
2329 2454 8.474025 GGACAATGGTGGTATGAAAATTATGAA 58.526 33.333 0.00 0.00 0.00 2.57
2332 2457 7.969690 TGGACAATGGTGGTATGAAAATTAT 57.030 32.000 0.00 0.00 0.00 1.28
2333 2458 7.398618 ACATGGACAATGGTGGTATGAAAATTA 59.601 33.333 0.00 0.00 40.94 1.40
2334 2459 6.213195 ACATGGACAATGGTGGTATGAAAATT 59.787 34.615 0.00 0.00 40.94 1.82
2367 2495 2.271800 GCAACGGAAGGAGTGACTATG 58.728 52.381 0.00 0.00 0.00 2.23
2379 2511 4.319190 CGAGACACTTATTTTGCAACGGAA 60.319 41.667 0.00 0.00 0.00 4.30
2382 2514 4.383774 TCGAGACACTTATTTTGCAACG 57.616 40.909 0.00 0.00 0.00 4.10
2385 2517 4.002906 ACCTCGAGACACTTATTTTGCA 57.997 40.909 15.71 0.00 0.00 4.08
2386 2518 5.169295 ACTACCTCGAGACACTTATTTTGC 58.831 41.667 15.71 0.00 0.00 3.68
2405 2537 6.913873 TTGTGACAACAAAGAAGGTACTAC 57.086 37.500 0.00 0.00 43.32 2.73
2426 2558 9.565213 GAATAACATCTTCTTGGAACAGAATTG 57.435 33.333 0.00 0.00 42.39 2.32
2526 5623 4.653801 ACACCCTCCAGCTTAAAAATGTTT 59.346 37.500 0.00 0.00 0.00 2.83
2581 5708 5.745294 GTGATACAATTGCGATCAAATGCTT 59.255 36.000 19.81 0.00 36.75 3.91
2692 5819 1.464997 GTGCGAAAAGGCTCAAGTAGG 59.535 52.381 0.00 0.00 0.00 3.18
2693 5820 1.464997 GGTGCGAAAAGGCTCAAGTAG 59.535 52.381 0.00 0.00 0.00 2.57
2694 5821 1.071699 AGGTGCGAAAAGGCTCAAGTA 59.928 47.619 0.00 0.00 0.00 2.24
2695 5822 0.179018 AGGTGCGAAAAGGCTCAAGT 60.179 50.000 0.00 0.00 0.00 3.16
2696 5823 0.239347 CAGGTGCGAAAAGGCTCAAG 59.761 55.000 0.00 0.00 0.00 3.02
2697 5824 0.465460 ACAGGTGCGAAAAGGCTCAA 60.465 50.000 0.00 0.00 0.00 3.02
2698 5825 1.148273 ACAGGTGCGAAAAGGCTCA 59.852 52.632 0.00 0.00 0.00 4.26
2699 5826 1.576421 CACAGGTGCGAAAAGGCTC 59.424 57.895 0.00 0.00 0.00 4.70
2700 5827 3.749981 CACAGGTGCGAAAAGGCT 58.250 55.556 0.00 0.00 0.00 4.58
2710 5837 0.812811 CGATCCATGGAGCACAGGTG 60.813 60.000 28.47 8.31 0.00 4.00
2711 5838 1.267574 ACGATCCATGGAGCACAGGT 61.268 55.000 28.47 15.70 0.00 4.00
2712 5839 0.752658 TACGATCCATGGAGCACAGG 59.247 55.000 28.47 15.05 0.00 4.00
2713 5840 1.410517 ACTACGATCCATGGAGCACAG 59.589 52.381 28.47 24.13 0.00 3.66
2714 5841 1.485124 ACTACGATCCATGGAGCACA 58.515 50.000 28.47 14.66 0.00 4.57
2715 5842 2.604046 AACTACGATCCATGGAGCAC 57.396 50.000 28.47 16.56 0.00 4.40
2716 5843 3.627395 AAAACTACGATCCATGGAGCA 57.373 42.857 28.47 10.24 0.00 4.26
2742 5869 8.739972 ACTTCGAAATACCATTTCTTGCTTATT 58.260 29.630 0.00 0.00 0.00 1.40
2743 5870 8.281212 ACTTCGAAATACCATTTCTTGCTTAT 57.719 30.769 0.00 0.00 0.00 1.73
2744 5871 7.681939 ACTTCGAAATACCATTTCTTGCTTA 57.318 32.000 0.00 0.00 0.00 3.09
2745 5872 6.575162 ACTTCGAAATACCATTTCTTGCTT 57.425 33.333 0.00 0.00 0.00 3.91
2746 5873 6.349363 GGAACTTCGAAATACCATTTCTTGCT 60.349 38.462 0.00 0.00 0.00 3.91
2747 5874 5.800438 GGAACTTCGAAATACCATTTCTTGC 59.200 40.000 0.00 0.58 0.00 4.01
2748 5875 7.145932 AGGAACTTCGAAATACCATTTCTTG 57.854 36.000 13.82 3.32 27.25 3.02
2767 5894 9.528018 TTGAGACAACATTCATTTTAAAGGAAC 57.472 29.630 6.94 0.00 0.00 3.62
2768 5895 9.748708 CTTGAGACAACATTCATTTTAAAGGAA 57.251 29.630 7.23 7.23 0.00 3.36
2769 5896 8.912988 ACTTGAGACAACATTCATTTTAAAGGA 58.087 29.630 0.00 0.00 0.00 3.36
2777 5904 8.896744 CCATATGTACTTGAGACAACATTCATT 58.103 33.333 1.24 0.00 34.54 2.57
2778 5905 8.267183 TCCATATGTACTTGAGACAACATTCAT 58.733 33.333 1.24 0.00 34.54 2.57
2779 5906 7.619965 TCCATATGTACTTGAGACAACATTCA 58.380 34.615 1.24 0.00 34.54 2.57
2780 5907 8.554528 CATCCATATGTACTTGAGACAACATTC 58.445 37.037 1.24 0.00 34.54 2.67
2781 5908 8.049117 ACATCCATATGTACTTGAGACAACATT 58.951 33.333 1.24 0.00 44.66 2.71
2782 5909 7.568349 ACATCCATATGTACTTGAGACAACAT 58.432 34.615 1.24 0.00 44.66 2.71
2783 5910 6.946340 ACATCCATATGTACTTGAGACAACA 58.054 36.000 1.24 0.00 44.66 3.33
2784 5911 7.766278 AGAACATCCATATGTACTTGAGACAAC 59.234 37.037 1.24 0.00 45.79 3.32
2785 5912 7.851228 AGAACATCCATATGTACTTGAGACAA 58.149 34.615 1.24 0.00 45.79 3.18
2786 5913 7.417911 GGAGAACATCCATATGTACTTGAGACA 60.418 40.741 1.24 0.00 45.79 3.41
2787 5914 6.926272 GGAGAACATCCATATGTACTTGAGAC 59.074 42.308 1.24 0.00 45.79 3.36
2788 5915 7.055667 GGAGAACATCCATATGTACTTGAGA 57.944 40.000 1.24 0.00 45.79 3.27
2803 5930 2.119801 ACAGGTGCATGGAGAACATC 57.880 50.000 0.00 0.00 37.84 3.06
2804 5931 3.719268 TTACAGGTGCATGGAGAACAT 57.281 42.857 0.00 0.00 41.57 2.71
2805 5932 3.500448 TTTACAGGTGCATGGAGAACA 57.500 42.857 0.00 0.00 0.00 3.18
2806 5933 5.391312 AATTTTACAGGTGCATGGAGAAC 57.609 39.130 0.00 0.00 0.00 3.01
2807 5934 5.538053 TGAAATTTTACAGGTGCATGGAGAA 59.462 36.000 0.00 0.00 0.00 2.87
2808 5935 5.076182 TGAAATTTTACAGGTGCATGGAGA 58.924 37.500 0.00 0.00 0.00 3.71
2809 5936 5.389859 TGAAATTTTACAGGTGCATGGAG 57.610 39.130 0.00 0.00 0.00 3.86
2810 5937 5.999205 ATGAAATTTTACAGGTGCATGGA 57.001 34.783 0.00 0.00 0.00 3.41
2811 5938 8.545229 TTTAATGAAATTTTACAGGTGCATGG 57.455 30.769 0.00 0.00 37.87 3.66
2824 5951 9.869757 CGGAGGGAGTTTTATTTAATGAAATTT 57.130 29.630 0.00 0.00 37.87 1.82
2825 5952 9.031537 ACGGAGGGAGTTTTATTTAATGAAATT 57.968 29.630 0.00 0.00 41.28 1.82
2826 5953 8.589701 ACGGAGGGAGTTTTATTTAATGAAAT 57.410 30.769 0.00 0.00 38.79 2.17
2827 5954 8.411991 AACGGAGGGAGTTTTATTTAATGAAA 57.588 30.769 0.00 0.00 0.00 2.69
2828 5955 7.886446 AGAACGGAGGGAGTTTTATTTAATGAA 59.114 33.333 0.00 0.00 31.14 2.57
2829 5956 7.399634 AGAACGGAGGGAGTTTTATTTAATGA 58.600 34.615 0.00 0.00 31.14 2.57
2830 5957 7.553044 AGAGAACGGAGGGAGTTTTATTTAATG 59.447 37.037 0.00 0.00 31.14 1.90
2831 5958 7.631007 AGAGAACGGAGGGAGTTTTATTTAAT 58.369 34.615 0.00 0.00 31.14 1.40
2832 5959 7.012661 AGAGAACGGAGGGAGTTTTATTTAA 57.987 36.000 0.00 0.00 31.14 1.52
2833 5960 6.616237 AGAGAACGGAGGGAGTTTTATTTA 57.384 37.500 0.00 0.00 31.14 1.40
2834 5961 5.500546 AGAGAACGGAGGGAGTTTTATTT 57.499 39.130 0.00 0.00 31.14 1.40
2835 5962 6.616237 TTAGAGAACGGAGGGAGTTTTATT 57.384 37.500 0.00 0.00 31.14 1.40
2836 5963 6.809976 ATTAGAGAACGGAGGGAGTTTTAT 57.190 37.500 0.00 0.00 31.14 1.40
2837 5964 7.909485 ATATTAGAGAACGGAGGGAGTTTTA 57.091 36.000 0.00 0.00 31.14 1.52
2838 5965 6.809976 ATATTAGAGAACGGAGGGAGTTTT 57.190 37.500 0.00 0.00 31.14 2.43
2839 5966 7.783596 TCTTATATTAGAGAACGGAGGGAGTTT 59.216 37.037 0.00 0.00 31.14 2.66
2840 5967 7.231115 GTCTTATATTAGAGAACGGAGGGAGTT 59.769 40.741 0.00 0.00 34.07 3.01
2841 5968 6.716173 GTCTTATATTAGAGAACGGAGGGAGT 59.284 42.308 0.00 0.00 0.00 3.85
2842 5969 6.151480 GGTCTTATATTAGAGAACGGAGGGAG 59.849 46.154 0.00 0.00 0.00 4.30
2843 5970 6.008960 GGTCTTATATTAGAGAACGGAGGGA 58.991 44.000 0.00 0.00 0.00 4.20
2844 5971 6.011481 AGGTCTTATATTAGAGAACGGAGGG 58.989 44.000 0.00 0.00 34.79 4.30
2845 5972 7.449086 AGAAGGTCTTATATTAGAGAACGGAGG 59.551 40.741 0.00 0.00 34.79 4.30
2846 5973 8.398878 AGAAGGTCTTATATTAGAGAACGGAG 57.601 38.462 0.00 0.00 34.79 4.63
2847 5974 9.504708 CTAGAAGGTCTTATATTAGAGAACGGA 57.495 37.037 0.00 0.00 34.79 4.69
2848 5975 8.732531 CCTAGAAGGTCTTATATTAGAGAACGG 58.267 40.741 0.00 0.00 34.79 4.44
2932 6059 9.863845 TTCTTGATTCGTATGTATCTAAACACA 57.136 29.630 3.57 0.00 30.75 3.72
2938 6065 9.817809 AGCTTTTTCTTGATTCGTATGTATCTA 57.182 29.630 3.57 0.00 0.00 1.98
2939 6066 8.723942 AGCTTTTTCTTGATTCGTATGTATCT 57.276 30.769 3.57 0.00 0.00 1.98
2943 6070 9.612620 CTTTTAGCTTTTTCTTGATTCGTATGT 57.387 29.630 0.00 0.00 0.00 2.29
2944 6071 9.825972 TCTTTTAGCTTTTTCTTGATTCGTATG 57.174 29.630 0.00 0.00 0.00 2.39
2947 6074 8.787852 AGATCTTTTAGCTTTTTCTTGATTCGT 58.212 29.630 0.00 0.00 0.00 3.85
2948 6075 9.617975 AAGATCTTTTAGCTTTTTCTTGATTCG 57.382 29.630 0.88 0.00 26.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.