Multiple sequence alignment - TraesCS7D01G238300
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS7D01G238300
chr7D
100.000
2246
0
0
1
2246
203484196
203486441
0.000000e+00
4148
1
TraesCS7D01G238300
chr7D
99.513
1438
4
2
812
2246
381904983
381906420
0.000000e+00
2614
2
TraesCS7D01G238300
chr7D
94.406
286
15
1
528
812
372336279
372335994
2.650000e-119
438
3
TraesCS7D01G238300
chr7D
94.056
286
16
1
528
812
362853231
362852946
1.230000e-117
433
4
TraesCS7D01G238300
chr7D
93.706
286
17
1
528
812
544290691
544290976
5.730000e-116
427
5
TraesCS7D01G238300
chrUn
99.513
1437
5
2
812
2246
206783665
206785101
0.000000e+00
2614
6
TraesCS7D01G238300
chrUn
99.444
1438
5
2
812
2246
86516147
86517584
0.000000e+00
2608
7
TraesCS7D01G238300
chrUn
99.304
1436
8
2
812
2246
345389633
345388199
0.000000e+00
2595
8
TraesCS7D01G238300
chr4D
99.513
1436
5
2
812
2246
123320492
123321926
0.000000e+00
2612
9
TraesCS7D01G238300
chr4D
99.164
1436
10
2
812
2246
123288723
123290157
0.000000e+00
2584
10
TraesCS7D01G238300
chr4D
96.154
546
16
3
1
543
362200956
362200413
0.000000e+00
887
11
TraesCS7D01G238300
chr4D
96.422
531
18
1
1
531
372113375
372112846
0.000000e+00
874
12
TraesCS7D01G238300
chr4D
97.193
285
8
0
528
812
361213723
361213439
1.210000e-132
483
13
TraesCS7D01G238300
chr7A
99.304
1436
8
2
812
2246
60264320
60265754
0.000000e+00
2595
14
TraesCS7D01G238300
chr6D
99.304
1436
6
4
812
2246
124502543
124503975
0.000000e+00
2593
15
TraesCS7D01G238300
chr6D
95.564
541
21
3
1
541
330351017
330351554
0.000000e+00
863
16
TraesCS7D01G238300
chr2B
99.164
1436
11
1
812
2246
391091845
391090410
0.000000e+00
2584
17
TraesCS7D01G238300
chr5D
96.798
531
15
1
1
531
175820239
175819711
0.000000e+00
885
18
TraesCS7D01G238300
chr5D
96.610
531
14
3
1
531
528426130
528425604
0.000000e+00
878
19
TraesCS7D01G238300
chr5D
96.408
529
19
0
1
529
191451812
191451284
0.000000e+00
872
20
TraesCS7D01G238300
chr5D
96.402
528
19
0
1
528
442214743
442214216
0.000000e+00
870
21
TraesCS7D01G238300
chr2D
96.774
527
16
1
1
527
197606687
197606162
0.000000e+00
878
22
TraesCS7D01G238300
chr2D
94.755
286
14
1
528
812
545293855
545294140
5.690000e-121
444
23
TraesCS7D01G238300
chr2D
94.056
286
16
1
528
812
516132529
516132814
1.230000e-117
433
24
TraesCS7D01G238300
chr3D
96.395
527
19
0
1
527
114434095
114433569
0.000000e+00
869
25
TraesCS7D01G238300
chr3D
94.386
285
16
0
528
812
65113812
65114096
2.650000e-119
438
26
TraesCS7D01G238300
chr3D
93.706
286
17
1
528
812
308607363
308607648
5.730000e-116
427
27
TraesCS7D01G238300
chr1D
85.814
571
74
7
1
568
88400043
88400609
1.150000e-167
599
28
TraesCS7D01G238300
chr1A
94.464
289
15
1
525
812
311303548
311303836
5.690000e-121
444
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS7D01G238300
chr7D
203484196
203486441
2245
False
4148
4148
100.000
1
2246
1
chr7D.!!$F1
2245
1
TraesCS7D01G238300
chr7D
381904983
381906420
1437
False
2614
2614
99.513
812
2246
1
chr7D.!!$F2
1434
2
TraesCS7D01G238300
chrUn
206783665
206785101
1436
False
2614
2614
99.513
812
2246
1
chrUn.!!$F2
1434
3
TraesCS7D01G238300
chrUn
86516147
86517584
1437
False
2608
2608
99.444
812
2246
1
chrUn.!!$F1
1434
4
TraesCS7D01G238300
chrUn
345388199
345389633
1434
True
2595
2595
99.304
812
2246
1
chrUn.!!$R1
1434
5
TraesCS7D01G238300
chr4D
123320492
123321926
1434
False
2612
2612
99.513
812
2246
1
chr4D.!!$F2
1434
6
TraesCS7D01G238300
chr4D
123288723
123290157
1434
False
2584
2584
99.164
812
2246
1
chr4D.!!$F1
1434
7
TraesCS7D01G238300
chr4D
362200413
362200956
543
True
887
887
96.154
1
543
1
chr4D.!!$R2
542
8
TraesCS7D01G238300
chr4D
372112846
372113375
529
True
874
874
96.422
1
531
1
chr4D.!!$R3
530
9
TraesCS7D01G238300
chr7A
60264320
60265754
1434
False
2595
2595
99.304
812
2246
1
chr7A.!!$F1
1434
10
TraesCS7D01G238300
chr6D
124502543
124503975
1432
False
2593
2593
99.304
812
2246
1
chr6D.!!$F1
1434
11
TraesCS7D01G238300
chr6D
330351017
330351554
537
False
863
863
95.564
1
541
1
chr6D.!!$F2
540
12
TraesCS7D01G238300
chr2B
391090410
391091845
1435
True
2584
2584
99.164
812
2246
1
chr2B.!!$R1
1434
13
TraesCS7D01G238300
chr5D
175819711
175820239
528
True
885
885
96.798
1
531
1
chr5D.!!$R1
530
14
TraesCS7D01G238300
chr5D
528425604
528426130
526
True
878
878
96.610
1
531
1
chr5D.!!$R4
530
15
TraesCS7D01G238300
chr5D
191451284
191451812
528
True
872
872
96.408
1
529
1
chr5D.!!$R2
528
16
TraesCS7D01G238300
chr5D
442214216
442214743
527
True
870
870
96.402
1
528
1
chr5D.!!$R3
527
17
TraesCS7D01G238300
chr2D
197606162
197606687
525
True
878
878
96.774
1
527
1
chr2D.!!$R1
526
18
TraesCS7D01G238300
chr3D
114433569
114434095
526
True
869
869
96.395
1
527
1
chr3D.!!$R1
526
19
TraesCS7D01G238300
chr1D
88400043
88400609
566
False
599
599
85.814
1
568
1
chr1D.!!$F1
567
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
583
584
0.034059
CATATGGCTCGGGTCAGACC
59.966
60.0
11.7
11.7
37.6
3.85
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1637
1638
3.961414
GGCCCGTTGAAGTCCCCA
61.961
66.667
0.0
0.0
0.0
4.96
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
71
72
1.343142
GTCAAATGGGTCGGCCTTTTT
59.657
47.619
5.77
3.22
34.45
1.94
168
169
2.358737
GTCCCAACGGTGAGCTGG
60.359
66.667
0.00
0.00
0.00
4.85
482
483
5.466819
CATGACAGAAAACGTGACCTACTA
58.533
41.667
0.00
0.00
0.00
1.82
539
540
4.991153
TTTGTAGTGCATGGTGAAAACA
57.009
36.364
0.00
0.00
0.00
2.83
540
541
5.528043
TTTGTAGTGCATGGTGAAAACAT
57.472
34.783
0.00
0.00
0.00
2.71
541
542
4.502171
TGTAGTGCATGGTGAAAACATG
57.498
40.909
0.80
0.80
46.45
3.21
542
543
3.255395
TGTAGTGCATGGTGAAAACATGG
59.745
43.478
7.35
0.00
44.45
3.66
544
545
3.495331
AGTGCATGGTGAAAACATGGTA
58.505
40.909
7.35
0.00
44.45
3.25
545
546
3.255642
AGTGCATGGTGAAAACATGGTAC
59.744
43.478
7.35
0.00
44.45
3.34
546
547
3.005261
GTGCATGGTGAAAACATGGTACA
59.995
43.478
7.35
0.00
44.45
2.90
559
560
1.533625
TGGTACACCAAGCTTGATGC
58.466
50.000
28.05
15.00
44.35
3.91
560
561
0.447801
GGTACACCAAGCTTGATGCG
59.552
55.000
28.05
13.14
40.62
4.73
561
562
1.943968
GGTACACCAAGCTTGATGCGA
60.944
52.381
28.05
10.04
40.62
5.10
562
563
3.447937
GGTACACCAAGCTTGATGCGAA
61.448
50.000
28.05
7.52
40.62
4.70
563
564
4.729277
GGTACACCAAGCTTGATGCGAAT
61.729
47.826
28.05
7.47
40.62
3.34
564
565
6.489787
GGTACACCAAGCTTGATGCGAATC
62.490
50.000
28.05
6.96
40.62
2.52
571
572
2.860062
GCTTGATGCGAATCATATGGC
58.140
47.619
6.98
6.20
35.05
4.40
572
573
2.486982
GCTTGATGCGAATCATATGGCT
59.513
45.455
6.98
0.00
35.05
4.75
573
574
3.425892
GCTTGATGCGAATCATATGGCTC
60.426
47.826
6.98
0.00
35.05
4.70
574
575
2.340337
TGATGCGAATCATATGGCTCG
58.660
47.619
17.77
17.77
35.05
5.03
575
576
1.662629
GATGCGAATCATATGGCTCGG
59.337
52.381
21.25
9.38
35.05
4.63
576
577
0.320683
TGCGAATCATATGGCTCGGG
60.321
55.000
21.25
3.39
0.00
5.14
577
578
0.320771
GCGAATCATATGGCTCGGGT
60.321
55.000
21.25
0.00
0.00
5.28
578
579
1.714794
CGAATCATATGGCTCGGGTC
58.285
55.000
15.51
0.00
0.00
4.46
579
580
1.000843
CGAATCATATGGCTCGGGTCA
59.999
52.381
15.51
0.00
0.00
4.02
580
581
2.693069
GAATCATATGGCTCGGGTCAG
58.307
52.381
0.00
0.00
0.00
3.51
581
582
2.015456
ATCATATGGCTCGGGTCAGA
57.985
50.000
0.00
0.00
0.00
3.27
582
583
1.040646
TCATATGGCTCGGGTCAGAC
58.959
55.000
0.00
0.00
0.00
3.51
583
584
0.034059
CATATGGCTCGGGTCAGACC
59.966
60.000
11.70
11.70
37.60
3.85
584
585
0.105453
ATATGGCTCGGGTCAGACCT
60.105
55.000
19.57
0.00
38.64
3.85
585
586
0.755698
TATGGCTCGGGTCAGACCTC
60.756
60.000
19.57
8.61
38.64
3.85
586
587
2.363147
GGCTCGGGTCAGACCTCT
60.363
66.667
19.57
0.00
38.64
3.69
587
588
1.076923
GGCTCGGGTCAGACCTCTA
60.077
63.158
19.57
4.41
38.64
2.43
588
589
1.104577
GGCTCGGGTCAGACCTCTAG
61.105
65.000
19.57
14.21
38.64
2.43
589
590
1.104577
GCTCGGGTCAGACCTCTAGG
61.105
65.000
19.57
6.84
38.64
3.02
590
591
0.466555
CTCGGGTCAGACCTCTAGGG
60.467
65.000
19.57
5.12
38.64
3.53
601
602
2.478872
CCTCTAGGGTCAGATGGGAA
57.521
55.000
0.00
0.00
0.00
3.97
602
603
2.764269
CCTCTAGGGTCAGATGGGAAA
58.236
52.381
0.00
0.00
0.00
3.13
603
604
2.703007
CCTCTAGGGTCAGATGGGAAAG
59.297
54.545
0.00
0.00
0.00
2.62
604
605
3.631087
CCTCTAGGGTCAGATGGGAAAGA
60.631
52.174
0.00
0.00
0.00
2.52
605
606
4.033709
CTCTAGGGTCAGATGGGAAAGAA
58.966
47.826
0.00
0.00
0.00
2.52
606
607
4.033709
TCTAGGGTCAGATGGGAAAGAAG
58.966
47.826
0.00
0.00
0.00
2.85
607
608
2.637165
AGGGTCAGATGGGAAAGAAGT
58.363
47.619
0.00
0.00
0.00
3.01
608
609
2.989571
AGGGTCAGATGGGAAAGAAGTT
59.010
45.455
0.00
0.00
0.00
2.66
609
610
3.009584
AGGGTCAGATGGGAAAGAAGTTC
59.990
47.826
0.00
0.00
35.28
3.01
622
623
6.080648
GAAAGAAGTTCCCGTTAATTTGGT
57.919
37.500
0.00
0.00
0.00
3.67
623
624
7.205737
GAAAGAAGTTCCCGTTAATTTGGTA
57.794
36.000
0.00
0.00
0.00
3.25
624
625
7.770366
AAAGAAGTTCCCGTTAATTTGGTAT
57.230
32.000
0.00
0.00
0.00
2.73
625
626
8.866970
AAAGAAGTTCCCGTTAATTTGGTATA
57.133
30.769
0.00
0.00
0.00
1.47
626
627
9.470399
AAAGAAGTTCCCGTTAATTTGGTATAT
57.530
29.630
0.00
0.00
0.00
0.86
627
628
8.446599
AGAAGTTCCCGTTAATTTGGTATATG
57.553
34.615
0.00
0.00
0.00
1.78
628
629
8.269317
AGAAGTTCCCGTTAATTTGGTATATGA
58.731
33.333
0.00
0.00
0.00
2.15
629
630
7.797038
AGTTCCCGTTAATTTGGTATATGAC
57.203
36.000
0.00
0.00
0.00
3.06
645
646
7.404139
GTATATGACCAAGTAAAAGTAGCCG
57.596
40.000
0.00
0.00
0.00
5.52
646
647
2.419667
TGACCAAGTAAAAGTAGCCGC
58.580
47.619
0.00
0.00
0.00
6.53
647
648
1.736126
GACCAAGTAAAAGTAGCCGCC
59.264
52.381
0.00
0.00
0.00
6.13
648
649
1.072648
ACCAAGTAAAAGTAGCCGCCA
59.927
47.619
0.00
0.00
0.00
5.69
649
650
2.156098
CCAAGTAAAAGTAGCCGCCAA
58.844
47.619
0.00
0.00
0.00
4.52
650
651
2.161609
CCAAGTAAAAGTAGCCGCCAAG
59.838
50.000
0.00
0.00
0.00
3.61
651
652
2.812011
CAAGTAAAAGTAGCCGCCAAGT
59.188
45.455
0.00
0.00
0.00
3.16
652
653
3.967332
AGTAAAAGTAGCCGCCAAGTA
57.033
42.857
0.00
0.00
0.00
2.24
653
654
4.482952
AGTAAAAGTAGCCGCCAAGTAT
57.517
40.909
0.00
0.00
0.00
2.12
654
655
4.840271
AGTAAAAGTAGCCGCCAAGTATT
58.160
39.130
0.00
0.00
0.00
1.89
655
656
4.874396
AGTAAAAGTAGCCGCCAAGTATTC
59.126
41.667
0.00
0.00
0.00
1.75
656
657
2.327200
AAGTAGCCGCCAAGTATTCC
57.673
50.000
0.00
0.00
0.00
3.01
657
658
1.497161
AGTAGCCGCCAAGTATTCCT
58.503
50.000
0.00
0.00
0.00
3.36
658
659
2.674420
AGTAGCCGCCAAGTATTCCTA
58.326
47.619
0.00
0.00
0.00
2.94
659
660
2.628657
AGTAGCCGCCAAGTATTCCTAG
59.371
50.000
0.00
0.00
0.00
3.02
660
661
0.106894
AGCCGCCAAGTATTCCTAGC
59.893
55.000
0.00
0.00
0.00
3.42
661
662
0.179056
GCCGCCAAGTATTCCTAGCA
60.179
55.000
0.00
0.00
0.00
3.49
662
663
1.871080
CCGCCAAGTATTCCTAGCAG
58.129
55.000
0.00
0.00
0.00
4.24
663
664
1.541233
CCGCCAAGTATTCCTAGCAGG
60.541
57.143
0.00
0.00
36.46
4.85
664
665
1.412710
CGCCAAGTATTCCTAGCAGGA
59.587
52.381
1.25
1.25
44.10
3.86
665
666
2.037772
CGCCAAGTATTCCTAGCAGGAT
59.962
50.000
5.83
0.97
45.34
3.24
666
667
3.495100
CGCCAAGTATTCCTAGCAGGATT
60.495
47.826
5.83
5.58
45.34
3.01
667
668
3.817647
GCCAAGTATTCCTAGCAGGATTG
59.182
47.826
5.83
7.26
45.34
2.67
668
669
3.817647
CCAAGTATTCCTAGCAGGATTGC
59.182
47.826
5.83
6.45
45.34
3.56
680
681
3.754188
CAGGATTGCAAGTTAGACAGC
57.246
47.619
4.94
0.00
0.00
4.40
681
682
2.421424
CAGGATTGCAAGTTAGACAGCC
59.579
50.000
4.94
0.00
0.00
4.85
682
683
2.307098
AGGATTGCAAGTTAGACAGCCT
59.693
45.455
4.94
0.00
0.00
4.58
683
684
2.421424
GGATTGCAAGTTAGACAGCCTG
59.579
50.000
4.94
0.00
0.00
4.85
684
685
1.238439
TTGCAAGTTAGACAGCCTGC
58.762
50.000
0.00
0.00
0.00
4.85
685
686
0.397941
TGCAAGTTAGACAGCCTGCT
59.602
50.000
0.00
0.00
0.00
4.24
699
700
3.976339
CTGCTGGACGGGATAGAAG
57.024
57.895
0.00
0.00
0.00
2.85
700
701
1.403814
CTGCTGGACGGGATAGAAGA
58.596
55.000
0.00
0.00
0.00
2.87
701
702
1.967066
CTGCTGGACGGGATAGAAGAT
59.033
52.381
0.00
0.00
0.00
2.40
702
703
1.688735
TGCTGGACGGGATAGAAGATG
59.311
52.381
0.00
0.00
0.00
2.90
703
704
1.964223
GCTGGACGGGATAGAAGATGA
59.036
52.381
0.00
0.00
0.00
2.92
704
705
2.564947
GCTGGACGGGATAGAAGATGAT
59.435
50.000
0.00
0.00
0.00
2.45
705
706
3.007398
GCTGGACGGGATAGAAGATGATT
59.993
47.826
0.00
0.00
0.00
2.57
706
707
4.503991
GCTGGACGGGATAGAAGATGATTT
60.504
45.833
0.00
0.00
0.00
2.17
707
708
5.615289
CTGGACGGGATAGAAGATGATTTT
58.385
41.667
0.00
0.00
0.00
1.82
708
709
6.001449
TGGACGGGATAGAAGATGATTTTT
57.999
37.500
0.00
0.00
0.00
1.94
736
737
6.038997
GTCCAAGTGACTATGTACTTTCCT
57.961
41.667
0.00
0.00
41.03
3.36
737
738
6.465084
GTCCAAGTGACTATGTACTTTCCTT
58.535
40.000
0.00
0.00
41.03
3.36
738
739
6.590677
GTCCAAGTGACTATGTACTTTCCTTC
59.409
42.308
0.00
0.00
41.03
3.46
739
740
6.497259
TCCAAGTGACTATGTACTTTCCTTCT
59.503
38.462
0.00
0.00
35.08
2.85
740
741
7.672660
TCCAAGTGACTATGTACTTTCCTTCTA
59.327
37.037
0.00
0.00
35.08
2.10
741
742
7.976734
CCAAGTGACTATGTACTTTCCTTCTAG
59.023
40.741
0.00
0.00
35.08
2.43
742
743
7.102847
AGTGACTATGTACTTTCCTTCTAGC
57.897
40.000
0.00
0.00
0.00
3.42
743
744
6.097129
AGTGACTATGTACTTTCCTTCTAGCC
59.903
42.308
0.00
0.00
0.00
3.93
744
745
5.067413
TGACTATGTACTTTCCTTCTAGCCG
59.933
44.000
0.00
0.00
0.00
5.52
745
746
5.198965
ACTATGTACTTTCCTTCTAGCCGA
58.801
41.667
0.00
0.00
0.00
5.54
746
747
5.655532
ACTATGTACTTTCCTTCTAGCCGAA
59.344
40.000
0.00
0.00
0.00
4.30
747
748
5.615925
ATGTACTTTCCTTCTAGCCGAAT
57.384
39.130
0.00
0.00
0.00
3.34
748
749
5.416271
TGTACTTTCCTTCTAGCCGAATT
57.584
39.130
0.00
0.00
0.00
2.17
749
750
5.175859
TGTACTTTCCTTCTAGCCGAATTG
58.824
41.667
0.00
0.00
0.00
2.32
750
751
4.287766
ACTTTCCTTCTAGCCGAATTGT
57.712
40.909
0.00
0.00
0.00
2.71
751
752
5.416271
ACTTTCCTTCTAGCCGAATTGTA
57.584
39.130
0.00
0.00
0.00
2.41
752
753
5.801380
ACTTTCCTTCTAGCCGAATTGTAA
58.199
37.500
0.00
0.00
0.00
2.41
753
754
6.235664
ACTTTCCTTCTAGCCGAATTGTAAA
58.764
36.000
0.00
0.00
0.00
2.01
754
755
6.713450
ACTTTCCTTCTAGCCGAATTGTAAAA
59.287
34.615
0.00
0.00
0.00
1.52
755
756
7.393515
ACTTTCCTTCTAGCCGAATTGTAAAAT
59.606
33.333
0.00
0.00
0.00
1.82
756
757
6.677781
TCCTTCTAGCCGAATTGTAAAATG
57.322
37.500
0.00
0.00
0.00
2.32
757
758
6.411376
TCCTTCTAGCCGAATTGTAAAATGA
58.589
36.000
0.00
0.00
0.00
2.57
758
759
7.054124
TCCTTCTAGCCGAATTGTAAAATGAT
58.946
34.615
0.00
0.00
0.00
2.45
759
760
7.556275
TCCTTCTAGCCGAATTGTAAAATGATT
59.444
33.333
0.00
0.00
0.00
2.57
760
761
7.645340
CCTTCTAGCCGAATTGTAAAATGATTG
59.355
37.037
0.00
0.00
0.00
2.67
761
762
7.624360
TCTAGCCGAATTGTAAAATGATTGT
57.376
32.000
0.00
0.00
0.00
2.71
762
763
7.693952
TCTAGCCGAATTGTAAAATGATTGTC
58.306
34.615
0.00
0.00
0.00
3.18
763
764
6.266168
AGCCGAATTGTAAAATGATTGTCA
57.734
33.333
0.00
0.00
0.00
3.58
764
765
6.866480
AGCCGAATTGTAAAATGATTGTCAT
58.134
32.000
0.00
0.00
39.09
3.06
765
766
6.753279
AGCCGAATTGTAAAATGATTGTCATG
59.247
34.615
0.00
0.00
37.15
3.07
766
767
6.019640
GCCGAATTGTAAAATGATTGTCATGG
60.020
38.462
0.00
0.00
37.15
3.66
767
768
7.035004
CCGAATTGTAAAATGATTGTCATGGT
58.965
34.615
0.00
0.00
37.15
3.55
768
769
8.187480
CCGAATTGTAAAATGATTGTCATGGTA
58.813
33.333
0.00
0.00
37.15
3.25
769
770
9.225201
CGAATTGTAAAATGATTGTCATGGTAG
57.775
33.333
0.00
0.00
37.15
3.18
772
773
7.624360
TGTAAAATGATTGTCATGGTAGACC
57.376
36.000
0.00
0.00
37.15
3.85
773
774
7.402054
TGTAAAATGATTGTCATGGTAGACCT
58.598
34.615
0.00
0.00
37.15
3.85
774
775
7.888021
TGTAAAATGATTGTCATGGTAGACCTT
59.112
33.333
0.00
0.00
37.15
3.50
775
776
7.781324
AAAATGATTGTCATGGTAGACCTTT
57.219
32.000
0.00
0.00
37.15
3.11
776
777
7.781324
AAATGATTGTCATGGTAGACCTTTT
57.219
32.000
0.00
0.00
37.15
2.27
777
778
7.396540
AATGATTGTCATGGTAGACCTTTTC
57.603
36.000
0.00
0.00
37.15
2.29
778
779
4.935205
TGATTGTCATGGTAGACCTTTTCG
59.065
41.667
0.00
0.00
37.73
3.46
779
780
2.695359
TGTCATGGTAGACCTTTTCGC
58.305
47.619
0.00
0.00
37.73
4.70
780
781
2.301870
TGTCATGGTAGACCTTTTCGCT
59.698
45.455
0.00
0.00
37.73
4.93
781
782
3.244422
TGTCATGGTAGACCTTTTCGCTT
60.244
43.478
0.00
0.00
37.73
4.68
782
783
3.371285
GTCATGGTAGACCTTTTCGCTTC
59.629
47.826
0.00
0.00
36.82
3.86
783
784
2.074547
TGGTAGACCTTTTCGCTTCG
57.925
50.000
0.00
0.00
36.82
3.79
784
785
1.614903
TGGTAGACCTTTTCGCTTCGA
59.385
47.619
0.00
0.00
36.82
3.71
785
786
1.991264
GGTAGACCTTTTCGCTTCGAC
59.009
52.381
0.00
0.00
34.89
4.20
786
787
1.991264
GTAGACCTTTTCGCTTCGACC
59.009
52.381
0.00
0.00
34.89
4.79
787
788
0.680061
AGACCTTTTCGCTTCGACCT
59.320
50.000
0.00
0.00
34.89
3.85
788
789
1.069255
GACCTTTTCGCTTCGACCTC
58.931
55.000
0.00
0.00
34.89
3.85
789
790
0.680061
ACCTTTTCGCTTCGACCTCT
59.320
50.000
0.00
0.00
34.89
3.69
790
791
1.071605
CCTTTTCGCTTCGACCTCTG
58.928
55.000
0.00
0.00
34.89
3.35
791
792
1.071605
CTTTTCGCTTCGACCTCTGG
58.928
55.000
0.00
0.00
34.89
3.86
792
793
0.677288
TTTTCGCTTCGACCTCTGGA
59.323
50.000
0.00
0.00
34.89
3.86
793
794
0.038526
TTTCGCTTCGACCTCTGGAC
60.039
55.000
0.00
0.00
34.89
4.02
794
795
2.196382
TTCGCTTCGACCTCTGGACG
62.196
60.000
2.38
2.38
41.67
4.79
795
796
2.182030
GCTTCGACCTCTGGACGG
59.818
66.667
8.36
0.00
40.79
4.79
796
797
2.341101
GCTTCGACCTCTGGACGGA
61.341
63.158
8.36
0.00
40.79
4.69
797
798
1.874345
GCTTCGACCTCTGGACGGAA
61.874
60.000
8.36
2.33
40.79
4.30
798
799
0.171455
CTTCGACCTCTGGACGGAAG
59.829
60.000
8.36
7.21
40.79
3.46
799
800
1.248785
TTCGACCTCTGGACGGAAGG
61.249
60.000
8.36
0.00
40.79
3.46
800
801
1.977544
CGACCTCTGGACGGAAGGT
60.978
63.158
0.92
0.00
37.24
3.50
801
802
1.592223
GACCTCTGGACGGAAGGTG
59.408
63.158
0.00
0.00
32.35
4.00
802
803
2.266055
CCTCTGGACGGAAGGTGC
59.734
66.667
0.00
0.00
37.52
5.01
803
804
2.583441
CCTCTGGACGGAAGGTGCA
61.583
63.158
0.00
0.00
45.48
4.57
806
807
3.059982
TGGACGGAAGGTGCAGAG
58.940
61.111
0.00
0.00
42.55
3.35
807
808
1.837051
TGGACGGAAGGTGCAGAGT
60.837
57.895
0.00
0.00
42.55
3.24
808
809
1.374758
GGACGGAAGGTGCAGAGTG
60.375
63.158
0.00
0.00
36.89
3.51
809
810
1.367840
GACGGAAGGTGCAGAGTGT
59.632
57.895
0.00
0.00
0.00
3.55
810
811
0.249911
GACGGAAGGTGCAGAGTGTT
60.250
55.000
0.00
0.00
0.00
3.32
1697
1698
5.184671
GCAATTCTTCACCTTTTCCTCAGAT
59.815
40.000
0.00
0.00
0.00
2.90
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
71
72
1.281867
CAACAGAGGCCCATTCCTGTA
59.718
52.381
0.00
0.00
38.75
2.74
168
169
2.617274
GGCTGGAGGAAACACGTGC
61.617
63.158
17.22
0.00
0.00
5.34
482
483
3.616821
CCGTGATGATACGTGTTTGTCAT
59.383
43.478
0.00
0.04
42.24
3.06
532
533
3.561143
AGCTTGGTGTACCATGTTTTCA
58.439
40.909
15.66
0.00
46.97
2.69
533
534
4.037446
TCAAGCTTGGTGTACCATGTTTTC
59.963
41.667
25.73
1.81
46.97
2.29
536
537
3.222173
TCAAGCTTGGTGTACCATGTT
57.778
42.857
25.73
9.02
46.97
2.71
538
539
2.159338
GCATCAAGCTTGGTGTACCATG
60.159
50.000
34.05
23.81
46.97
3.66
539
540
2.094675
GCATCAAGCTTGGTGTACCAT
58.905
47.619
34.05
14.03
46.97
3.55
540
541
1.533625
GCATCAAGCTTGGTGTACCA
58.466
50.000
34.05
12.36
45.94
3.25
541
542
0.447801
CGCATCAAGCTTGGTGTACC
59.552
55.000
34.05
20.19
41.32
3.34
542
543
1.438651
TCGCATCAAGCTTGGTGTAC
58.561
50.000
34.05
20.83
41.32
2.90
544
545
1.470098
GATTCGCATCAAGCTTGGTGT
59.530
47.619
34.05
19.00
41.32
4.16
545
546
1.469703
TGATTCGCATCAAGCTTGGTG
59.530
47.619
31.31
31.31
42.15
4.17
546
547
1.825090
TGATTCGCATCAAGCTTGGT
58.175
45.000
25.73
17.40
42.61
3.67
547
548
4.473199
CATATGATTCGCATCAAGCTTGG
58.527
43.478
25.73
12.18
42.93
3.61
548
549
4.473199
CCATATGATTCGCATCAAGCTTG
58.527
43.478
20.81
20.81
42.93
4.01
549
550
3.057736
GCCATATGATTCGCATCAAGCTT
60.058
43.478
3.65
0.00
42.93
3.74
550
551
2.486982
GCCATATGATTCGCATCAAGCT
59.513
45.455
3.65
0.00
42.93
3.74
551
552
2.486982
AGCCATATGATTCGCATCAAGC
59.513
45.455
3.65
3.54
42.93
4.01
552
553
3.181523
CGAGCCATATGATTCGCATCAAG
60.182
47.826
3.65
0.00
42.93
3.02
553
554
2.738314
CGAGCCATATGATTCGCATCAA
59.262
45.455
3.65
0.00
42.93
2.57
554
555
2.340337
CGAGCCATATGATTCGCATCA
58.660
47.619
3.65
0.00
43.85
3.07
555
556
1.662629
CCGAGCCATATGATTCGCATC
59.337
52.381
17.90
6.99
38.44
3.91
556
557
1.676916
CCCGAGCCATATGATTCGCAT
60.677
52.381
17.90
0.00
41.08
4.73
557
558
0.320683
CCCGAGCCATATGATTCGCA
60.321
55.000
17.90
0.00
0.00
5.10
558
559
0.320771
ACCCGAGCCATATGATTCGC
60.321
55.000
17.90
8.06
0.00
4.70
559
560
1.000843
TGACCCGAGCCATATGATTCG
59.999
52.381
16.92
16.92
0.00
3.34
560
561
2.300152
TCTGACCCGAGCCATATGATTC
59.700
50.000
3.65
0.39
0.00
2.52
561
562
2.037772
GTCTGACCCGAGCCATATGATT
59.962
50.000
3.65
0.00
0.00
2.57
562
563
1.620819
GTCTGACCCGAGCCATATGAT
59.379
52.381
3.65
0.00
0.00
2.45
563
564
1.040646
GTCTGACCCGAGCCATATGA
58.959
55.000
3.65
0.00
0.00
2.15
564
565
0.034059
GGTCTGACCCGAGCCATATG
59.966
60.000
16.14
0.00
30.04
1.78
565
566
0.105453
AGGTCTGACCCGAGCCATAT
60.105
55.000
22.81
0.00
39.75
1.78
566
567
0.755698
GAGGTCTGACCCGAGCCATA
60.756
60.000
22.81
0.00
39.75
2.74
567
568
2.039624
AGGTCTGACCCGAGCCAT
59.960
61.111
22.81
0.00
39.75
4.40
568
569
1.859841
TAGAGGTCTGACCCGAGCCA
61.860
60.000
22.81
0.48
39.75
4.75
569
570
1.076923
TAGAGGTCTGACCCGAGCC
60.077
63.158
22.81
7.76
39.75
4.70
570
571
1.104577
CCTAGAGGTCTGACCCGAGC
61.105
65.000
22.81
10.35
39.75
5.03
571
572
0.466555
CCCTAGAGGTCTGACCCGAG
60.467
65.000
22.81
17.61
39.75
4.63
572
573
1.613610
CCCTAGAGGTCTGACCCGA
59.386
63.158
22.81
10.00
39.75
5.14
573
574
4.261701
CCCTAGAGGTCTGACCCG
57.738
66.667
22.81
9.26
39.75
5.28
582
583
2.478872
TTCCCATCTGACCCTAGAGG
57.521
55.000
0.00
0.00
43.78
3.69
583
584
3.647636
TCTTTCCCATCTGACCCTAGAG
58.352
50.000
0.00
0.00
0.00
2.43
584
585
3.776731
TCTTTCCCATCTGACCCTAGA
57.223
47.619
0.00
0.00
0.00
2.43
585
586
3.777522
ACTTCTTTCCCATCTGACCCTAG
59.222
47.826
0.00
0.00
0.00
3.02
586
587
3.803340
ACTTCTTTCCCATCTGACCCTA
58.197
45.455
0.00
0.00
0.00
3.53
587
588
2.637165
ACTTCTTTCCCATCTGACCCT
58.363
47.619
0.00
0.00
0.00
4.34
588
589
3.348119
GAACTTCTTTCCCATCTGACCC
58.652
50.000
0.00
0.00
0.00
4.46
599
600
6.080648
ACCAAATTAACGGGAACTTCTTTC
57.919
37.500
0.00
0.00
0.00
2.62
600
601
7.770366
ATACCAAATTAACGGGAACTTCTTT
57.230
32.000
0.00
0.00
0.00
2.52
601
602
8.899771
CATATACCAAATTAACGGGAACTTCTT
58.100
33.333
0.00
0.00
0.00
2.52
602
603
8.269317
TCATATACCAAATTAACGGGAACTTCT
58.731
33.333
0.00
0.00
0.00
2.85
603
604
8.340443
GTCATATACCAAATTAACGGGAACTTC
58.660
37.037
0.00
0.00
0.00
3.01
604
605
8.217131
GTCATATACCAAATTAACGGGAACTT
57.783
34.615
0.00
0.00
0.00
2.66
605
606
7.797038
GTCATATACCAAATTAACGGGAACT
57.203
36.000
0.00
0.00
0.00
3.01
621
622
6.073927
GCGGCTACTTTTACTTGGTCATATAC
60.074
42.308
0.00
0.00
0.00
1.47
622
623
5.987347
GCGGCTACTTTTACTTGGTCATATA
59.013
40.000
0.00
0.00
0.00
0.86
623
624
4.814771
GCGGCTACTTTTACTTGGTCATAT
59.185
41.667
0.00
0.00
0.00
1.78
624
625
4.186159
GCGGCTACTTTTACTTGGTCATA
58.814
43.478
0.00
0.00
0.00
2.15
625
626
3.007635
GCGGCTACTTTTACTTGGTCAT
58.992
45.455
0.00
0.00
0.00
3.06
626
627
2.419667
GCGGCTACTTTTACTTGGTCA
58.580
47.619
0.00
0.00
0.00
4.02
627
628
1.736126
GGCGGCTACTTTTACTTGGTC
59.264
52.381
0.00
0.00
0.00
4.02
628
629
1.072648
TGGCGGCTACTTTTACTTGGT
59.927
47.619
11.43
0.00
0.00
3.67
629
630
1.816074
TGGCGGCTACTTTTACTTGG
58.184
50.000
11.43
0.00
0.00
3.61
630
631
2.812011
ACTTGGCGGCTACTTTTACTTG
59.188
45.455
11.43
0.00
0.00
3.16
631
632
3.136009
ACTTGGCGGCTACTTTTACTT
57.864
42.857
11.43
0.00
0.00
2.24
632
633
2.853235
ACTTGGCGGCTACTTTTACT
57.147
45.000
11.43
0.00
0.00
2.24
633
634
4.034858
GGAATACTTGGCGGCTACTTTTAC
59.965
45.833
11.43
0.00
0.00
2.01
634
635
4.080751
AGGAATACTTGGCGGCTACTTTTA
60.081
41.667
11.43
0.00
0.00
1.52
635
636
3.014623
GGAATACTTGGCGGCTACTTTT
58.985
45.455
11.43
0.00
0.00
2.27
636
637
2.238898
AGGAATACTTGGCGGCTACTTT
59.761
45.455
11.43
0.00
0.00
2.66
637
638
1.838077
AGGAATACTTGGCGGCTACTT
59.162
47.619
11.43
0.00
0.00
2.24
638
639
1.497161
AGGAATACTTGGCGGCTACT
58.503
50.000
11.43
0.00
0.00
2.57
639
640
2.866855
GCTAGGAATACTTGGCGGCTAC
60.867
54.545
11.43
0.00
0.00
3.58
640
641
1.343465
GCTAGGAATACTTGGCGGCTA
59.657
52.381
11.43
0.46
0.00
3.93
641
642
0.106894
GCTAGGAATACTTGGCGGCT
59.893
55.000
11.43
0.00
0.00
5.52
642
643
0.179056
TGCTAGGAATACTTGGCGGC
60.179
55.000
0.00
0.00
32.01
6.53
643
644
1.541233
CCTGCTAGGAATACTTGGCGG
60.541
57.143
0.00
0.00
37.67
6.13
644
645
1.412710
TCCTGCTAGGAATACTTGGCG
59.587
52.381
2.78
0.00
42.51
5.69
660
661
2.421424
GGCTGTCTAACTTGCAATCCTG
59.579
50.000
0.00
0.00
0.00
3.86
661
662
2.307098
AGGCTGTCTAACTTGCAATCCT
59.693
45.455
0.00
0.00
0.00
3.24
662
663
2.421424
CAGGCTGTCTAACTTGCAATCC
59.579
50.000
6.28
0.00
0.00
3.01
663
664
2.159462
GCAGGCTGTCTAACTTGCAATC
60.159
50.000
17.16
0.00
0.00
2.67
664
665
1.815003
GCAGGCTGTCTAACTTGCAAT
59.185
47.619
17.16
0.00
0.00
3.56
665
666
1.202806
AGCAGGCTGTCTAACTTGCAA
60.203
47.619
17.16
0.00
0.00
4.08
666
667
0.397941
AGCAGGCTGTCTAACTTGCA
59.602
50.000
17.16
0.00
0.00
4.08
667
668
0.801251
CAGCAGGCTGTCTAACTTGC
59.199
55.000
17.16
0.00
39.10
4.01
668
669
1.002430
TCCAGCAGGCTGTCTAACTTG
59.998
52.381
17.16
0.19
42.15
3.16
669
670
1.002544
GTCCAGCAGGCTGTCTAACTT
59.997
52.381
17.16
0.00
42.15
2.66
670
671
0.610687
GTCCAGCAGGCTGTCTAACT
59.389
55.000
17.16
0.59
42.15
2.24
671
672
0.737715
CGTCCAGCAGGCTGTCTAAC
60.738
60.000
17.16
12.96
42.15
2.34
672
673
1.591703
CGTCCAGCAGGCTGTCTAA
59.408
57.895
17.16
3.21
42.15
2.10
673
674
2.351244
CCGTCCAGCAGGCTGTCTA
61.351
63.158
17.16
2.73
42.15
2.59
674
675
3.699894
CCGTCCAGCAGGCTGTCT
61.700
66.667
17.16
10.85
42.15
3.41
675
676
4.767255
CCCGTCCAGCAGGCTGTC
62.767
72.222
17.16
8.57
42.15
3.51
677
678
2.374830
CTATCCCGTCCAGCAGGCTG
62.375
65.000
10.94
10.94
43.26
4.85
678
679
2.041922
TATCCCGTCCAGCAGGCT
60.042
61.111
0.00
0.00
33.74
4.58
679
680
1.686325
TTCTATCCCGTCCAGCAGGC
61.686
60.000
0.00
0.00
33.74
4.85
680
681
0.390860
CTTCTATCCCGTCCAGCAGG
59.609
60.000
0.00
0.00
0.00
4.85
681
682
1.403814
TCTTCTATCCCGTCCAGCAG
58.596
55.000
0.00
0.00
0.00
4.24
682
683
1.688735
CATCTTCTATCCCGTCCAGCA
59.311
52.381
0.00
0.00
0.00
4.41
683
684
1.964223
TCATCTTCTATCCCGTCCAGC
59.036
52.381
0.00
0.00
0.00
4.85
684
685
4.881019
AATCATCTTCTATCCCGTCCAG
57.119
45.455
0.00
0.00
0.00
3.86
685
686
5.630415
AAAATCATCTTCTATCCCGTCCA
57.370
39.130
0.00
0.00
0.00
4.02
714
715
6.497259
AGAAGGAAAGTACATAGTCACTTGGA
59.503
38.462
0.00
0.00
35.23
3.53
715
716
6.702329
AGAAGGAAAGTACATAGTCACTTGG
58.298
40.000
0.00
0.00
35.23
3.61
716
717
7.489757
GCTAGAAGGAAAGTACATAGTCACTTG
59.510
40.741
0.00
0.00
35.23
3.16
717
718
7.363968
GGCTAGAAGGAAAGTACATAGTCACTT
60.364
40.741
0.00
0.00
36.56
3.16
718
719
6.097129
GGCTAGAAGGAAAGTACATAGTCACT
59.903
42.308
0.00
0.00
0.00
3.41
719
720
6.274579
GGCTAGAAGGAAAGTACATAGTCAC
58.725
44.000
0.00
0.00
0.00
3.67
720
721
5.067413
CGGCTAGAAGGAAAGTACATAGTCA
59.933
44.000
0.00
0.00
0.00
3.41
721
722
5.298777
TCGGCTAGAAGGAAAGTACATAGTC
59.701
44.000
0.00
0.00
0.00
2.59
722
723
5.198965
TCGGCTAGAAGGAAAGTACATAGT
58.801
41.667
0.00
0.00
0.00
2.12
723
724
5.769484
TCGGCTAGAAGGAAAGTACATAG
57.231
43.478
0.00
0.00
0.00
2.23
724
725
6.726490
ATTCGGCTAGAAGGAAAGTACATA
57.274
37.500
0.00
0.00
42.92
2.29
725
726
5.615925
ATTCGGCTAGAAGGAAAGTACAT
57.384
39.130
0.00
0.00
42.92
2.29
726
727
5.175859
CAATTCGGCTAGAAGGAAAGTACA
58.824
41.667
0.00
0.00
42.92
2.90
727
728
5.176592
ACAATTCGGCTAGAAGGAAAGTAC
58.823
41.667
0.00
0.00
42.92
2.73
728
729
5.416271
ACAATTCGGCTAGAAGGAAAGTA
57.584
39.130
0.00
0.00
42.92
2.24
729
730
4.287766
ACAATTCGGCTAGAAGGAAAGT
57.712
40.909
0.00
0.00
42.92
2.66
730
731
6.737254
TTTACAATTCGGCTAGAAGGAAAG
57.263
37.500
0.00
0.00
42.92
2.62
731
732
7.392113
TCATTTTACAATTCGGCTAGAAGGAAA
59.608
33.333
0.00
0.00
42.92
3.13
732
733
6.882140
TCATTTTACAATTCGGCTAGAAGGAA
59.118
34.615
0.00
0.00
42.92
3.36
733
734
6.411376
TCATTTTACAATTCGGCTAGAAGGA
58.589
36.000
0.00
0.00
42.92
3.36
734
735
6.677781
TCATTTTACAATTCGGCTAGAAGG
57.322
37.500
0.00
0.30
42.92
3.46
735
736
8.184192
ACAATCATTTTACAATTCGGCTAGAAG
58.816
33.333
0.00
0.00
42.92
2.85
736
737
8.050778
ACAATCATTTTACAATTCGGCTAGAA
57.949
30.769
0.00
0.00
43.93
2.10
737
738
7.335673
TGACAATCATTTTACAATTCGGCTAGA
59.664
33.333
0.00
0.00
0.00
2.43
738
739
7.471721
TGACAATCATTTTACAATTCGGCTAG
58.528
34.615
0.00
0.00
0.00
3.42
739
740
7.384439
TGACAATCATTTTACAATTCGGCTA
57.616
32.000
0.00
0.00
0.00
3.93
740
741
6.266168
TGACAATCATTTTACAATTCGGCT
57.734
33.333
0.00
0.00
0.00
5.52
741
742
6.019640
CCATGACAATCATTTTACAATTCGGC
60.020
38.462
0.00
0.00
34.28
5.54
742
743
7.035004
ACCATGACAATCATTTTACAATTCGG
58.965
34.615
0.00
0.00
34.28
4.30
743
744
9.225201
CTACCATGACAATCATTTTACAATTCG
57.775
33.333
0.00
0.00
34.28
3.34
746
747
8.686334
GGTCTACCATGACAATCATTTTACAAT
58.314
33.333
0.00
0.00
34.28
2.71
747
748
7.888021
AGGTCTACCATGACAATCATTTTACAA
59.112
33.333
1.26
0.00
34.28
2.41
748
749
7.402054
AGGTCTACCATGACAATCATTTTACA
58.598
34.615
1.26
0.00
34.28
2.41
749
750
7.865706
AGGTCTACCATGACAATCATTTTAC
57.134
36.000
1.26
0.00
34.28
2.01
750
751
8.877864
AAAGGTCTACCATGACAATCATTTTA
57.122
30.769
1.26
0.00
34.28
1.52
751
752
7.781324
AAAGGTCTACCATGACAATCATTTT
57.219
32.000
1.26
0.00
34.28
1.82
752
753
7.362056
CGAAAAGGTCTACCATGACAATCATTT
60.362
37.037
1.26
0.00
34.28
2.32
753
754
6.094048
CGAAAAGGTCTACCATGACAATCATT
59.906
38.462
1.26
0.00
34.28
2.57
754
755
5.586243
CGAAAAGGTCTACCATGACAATCAT
59.414
40.000
1.26
0.00
37.65
2.45
755
756
4.935205
CGAAAAGGTCTACCATGACAATCA
59.065
41.667
1.26
0.00
38.61
2.57
756
757
4.201822
GCGAAAAGGTCTACCATGACAATC
60.202
45.833
1.26
0.00
38.61
2.67
757
758
3.689649
GCGAAAAGGTCTACCATGACAAT
59.310
43.478
1.26
0.00
38.61
2.71
758
759
3.071479
GCGAAAAGGTCTACCATGACAA
58.929
45.455
1.26
0.00
38.61
3.18
759
760
2.301870
AGCGAAAAGGTCTACCATGACA
59.698
45.455
1.26
0.00
38.61
3.58
760
761
2.973945
AGCGAAAAGGTCTACCATGAC
58.026
47.619
1.26
0.00
38.89
3.06
761
762
3.596214
GAAGCGAAAAGGTCTACCATGA
58.404
45.455
1.26
0.00
38.89
3.07
762
763
2.348666
CGAAGCGAAAAGGTCTACCATG
59.651
50.000
1.26
0.00
38.89
3.66
763
764
2.232941
TCGAAGCGAAAAGGTCTACCAT
59.767
45.455
1.26
0.00
33.28
3.55
764
765
1.614903
TCGAAGCGAAAAGGTCTACCA
59.385
47.619
1.26
0.00
33.28
3.25
765
766
1.991264
GTCGAAGCGAAAAGGTCTACC
59.009
52.381
0.00
0.00
37.72
3.18
766
767
1.991264
GGTCGAAGCGAAAAGGTCTAC
59.009
52.381
0.00
0.00
37.72
2.59
767
768
1.891150
AGGTCGAAGCGAAAAGGTCTA
59.109
47.619
0.00
0.00
37.72
2.59
768
769
0.680061
AGGTCGAAGCGAAAAGGTCT
59.320
50.000
0.00
0.00
37.72
3.85
769
770
1.069255
GAGGTCGAAGCGAAAAGGTC
58.931
55.000
0.00
0.00
37.72
3.85
770
771
0.680061
AGAGGTCGAAGCGAAAAGGT
59.320
50.000
0.00
0.00
37.72
3.50
771
772
1.071605
CAGAGGTCGAAGCGAAAAGG
58.928
55.000
0.00
0.00
37.72
3.11
772
773
1.071605
CCAGAGGTCGAAGCGAAAAG
58.928
55.000
0.00
0.00
37.72
2.27
773
774
0.677288
TCCAGAGGTCGAAGCGAAAA
59.323
50.000
0.00
0.00
37.72
2.29
774
775
0.038526
GTCCAGAGGTCGAAGCGAAA
60.039
55.000
0.00
0.00
37.72
3.46
775
776
1.585006
GTCCAGAGGTCGAAGCGAA
59.415
57.895
0.00
0.00
37.72
4.70
776
777
2.687805
CGTCCAGAGGTCGAAGCGA
61.688
63.158
0.00
0.00
36.43
4.93
777
778
2.202492
CGTCCAGAGGTCGAAGCG
60.202
66.667
0.00
0.00
36.43
4.68
778
779
1.874345
TTCCGTCCAGAGGTCGAAGC
61.874
60.000
4.33
0.00
36.43
3.86
779
780
0.171455
CTTCCGTCCAGAGGTCGAAG
59.829
60.000
4.33
3.35
36.43
3.79
780
781
1.248785
CCTTCCGTCCAGAGGTCGAA
61.249
60.000
4.33
0.00
36.43
3.71
781
782
1.677966
CCTTCCGTCCAGAGGTCGA
60.678
63.158
4.33
0.00
36.43
4.20
782
783
1.977544
ACCTTCCGTCCAGAGGTCG
60.978
63.158
0.00
0.00
39.55
4.79
783
784
1.592223
CACCTTCCGTCCAGAGGTC
59.408
63.158
0.00
0.00
41.72
3.85
784
785
2.584391
GCACCTTCCGTCCAGAGGT
61.584
63.158
0.00
0.00
44.39
3.85
785
786
2.266055
GCACCTTCCGTCCAGAGG
59.734
66.667
0.00
0.00
36.62
3.69
786
787
1.079543
CTGCACCTTCCGTCCAGAG
60.080
63.158
0.00
0.00
0.00
3.35
787
788
1.533033
TCTGCACCTTCCGTCCAGA
60.533
57.895
0.00
0.00
0.00
3.86
788
789
1.079543
CTCTGCACCTTCCGTCCAG
60.080
63.158
0.00
0.00
0.00
3.86
789
790
1.837051
ACTCTGCACCTTCCGTCCA
60.837
57.895
0.00
0.00
0.00
4.02
790
791
1.374758
CACTCTGCACCTTCCGTCC
60.375
63.158
0.00
0.00
0.00
4.79
791
792
0.249911
AACACTCTGCACCTTCCGTC
60.250
55.000
0.00
0.00
0.00
4.79
792
793
0.180406
AAACACTCTGCACCTTCCGT
59.820
50.000
0.00
0.00
0.00
4.69
793
794
1.002468
CAAAACACTCTGCACCTTCCG
60.002
52.381
0.00
0.00
0.00
4.30
794
795
1.269257
GCAAAACACTCTGCACCTTCC
60.269
52.381
0.00
0.00
38.48
3.46
795
796
1.405105
TGCAAAACACTCTGCACCTTC
59.595
47.619
0.00
0.00
43.44
3.46
796
797
1.473258
TGCAAAACACTCTGCACCTT
58.527
45.000
0.00
0.00
43.44
3.50
797
798
3.189568
TGCAAAACACTCTGCACCT
57.810
47.368
0.00
0.00
43.44
4.00
800
801
2.090760
TGACTTGCAAAACACTCTGCA
58.909
42.857
0.00
0.00
46.50
4.41
801
802
2.849880
TGACTTGCAAAACACTCTGC
57.150
45.000
0.00
0.00
39.09
4.26
802
803
4.361451
ACTTGACTTGCAAAACACTCTG
57.639
40.909
0.00
0.00
35.74
3.35
803
804
5.163513
CAAACTTGACTTGCAAAACACTCT
58.836
37.500
0.00
0.00
35.74
3.24
804
805
4.327087
CCAAACTTGACTTGCAAAACACTC
59.673
41.667
0.00
0.00
35.74
3.51
805
806
4.244862
CCAAACTTGACTTGCAAAACACT
58.755
39.130
0.00
0.00
35.74
3.55
806
807
3.370672
CCCAAACTTGACTTGCAAAACAC
59.629
43.478
0.00
0.00
35.74
3.32
807
808
3.594134
CCCAAACTTGACTTGCAAAACA
58.406
40.909
0.00
0.49
35.74
2.83
808
809
2.935849
CCCCAAACTTGACTTGCAAAAC
59.064
45.455
0.00
0.00
35.74
2.43
809
810
2.093235
CCCCCAAACTTGACTTGCAAAA
60.093
45.455
0.00
0.00
35.74
2.44
810
811
1.484240
CCCCCAAACTTGACTTGCAAA
59.516
47.619
0.00
0.00
35.74
3.68
1637
1638
3.961414
GGCCCGTTGAAGTCCCCA
61.961
66.667
0.00
0.00
0.00
4.96
1697
1698
6.945435
TCAAGTAAGAAAATGCATTCCCACTA
59.055
34.615
13.38
0.00
0.00
2.74
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.