Multiple sequence alignment - TraesCS7D01G238300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G238300 chr7D 100.000 2246 0 0 1 2246 203484196 203486441 0.000000e+00 4148
1 TraesCS7D01G238300 chr7D 99.513 1438 4 2 812 2246 381904983 381906420 0.000000e+00 2614
2 TraesCS7D01G238300 chr7D 94.406 286 15 1 528 812 372336279 372335994 2.650000e-119 438
3 TraesCS7D01G238300 chr7D 94.056 286 16 1 528 812 362853231 362852946 1.230000e-117 433
4 TraesCS7D01G238300 chr7D 93.706 286 17 1 528 812 544290691 544290976 5.730000e-116 427
5 TraesCS7D01G238300 chrUn 99.513 1437 5 2 812 2246 206783665 206785101 0.000000e+00 2614
6 TraesCS7D01G238300 chrUn 99.444 1438 5 2 812 2246 86516147 86517584 0.000000e+00 2608
7 TraesCS7D01G238300 chrUn 99.304 1436 8 2 812 2246 345389633 345388199 0.000000e+00 2595
8 TraesCS7D01G238300 chr4D 99.513 1436 5 2 812 2246 123320492 123321926 0.000000e+00 2612
9 TraesCS7D01G238300 chr4D 99.164 1436 10 2 812 2246 123288723 123290157 0.000000e+00 2584
10 TraesCS7D01G238300 chr4D 96.154 546 16 3 1 543 362200956 362200413 0.000000e+00 887
11 TraesCS7D01G238300 chr4D 96.422 531 18 1 1 531 372113375 372112846 0.000000e+00 874
12 TraesCS7D01G238300 chr4D 97.193 285 8 0 528 812 361213723 361213439 1.210000e-132 483
13 TraesCS7D01G238300 chr7A 99.304 1436 8 2 812 2246 60264320 60265754 0.000000e+00 2595
14 TraesCS7D01G238300 chr6D 99.304 1436 6 4 812 2246 124502543 124503975 0.000000e+00 2593
15 TraesCS7D01G238300 chr6D 95.564 541 21 3 1 541 330351017 330351554 0.000000e+00 863
16 TraesCS7D01G238300 chr2B 99.164 1436 11 1 812 2246 391091845 391090410 0.000000e+00 2584
17 TraesCS7D01G238300 chr5D 96.798 531 15 1 1 531 175820239 175819711 0.000000e+00 885
18 TraesCS7D01G238300 chr5D 96.610 531 14 3 1 531 528426130 528425604 0.000000e+00 878
19 TraesCS7D01G238300 chr5D 96.408 529 19 0 1 529 191451812 191451284 0.000000e+00 872
20 TraesCS7D01G238300 chr5D 96.402 528 19 0 1 528 442214743 442214216 0.000000e+00 870
21 TraesCS7D01G238300 chr2D 96.774 527 16 1 1 527 197606687 197606162 0.000000e+00 878
22 TraesCS7D01G238300 chr2D 94.755 286 14 1 528 812 545293855 545294140 5.690000e-121 444
23 TraesCS7D01G238300 chr2D 94.056 286 16 1 528 812 516132529 516132814 1.230000e-117 433
24 TraesCS7D01G238300 chr3D 96.395 527 19 0 1 527 114434095 114433569 0.000000e+00 869
25 TraesCS7D01G238300 chr3D 94.386 285 16 0 528 812 65113812 65114096 2.650000e-119 438
26 TraesCS7D01G238300 chr3D 93.706 286 17 1 528 812 308607363 308607648 5.730000e-116 427
27 TraesCS7D01G238300 chr1D 85.814 571 74 7 1 568 88400043 88400609 1.150000e-167 599
28 TraesCS7D01G238300 chr1A 94.464 289 15 1 525 812 311303548 311303836 5.690000e-121 444


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G238300 chr7D 203484196 203486441 2245 False 4148 4148 100.000 1 2246 1 chr7D.!!$F1 2245
1 TraesCS7D01G238300 chr7D 381904983 381906420 1437 False 2614 2614 99.513 812 2246 1 chr7D.!!$F2 1434
2 TraesCS7D01G238300 chrUn 206783665 206785101 1436 False 2614 2614 99.513 812 2246 1 chrUn.!!$F2 1434
3 TraesCS7D01G238300 chrUn 86516147 86517584 1437 False 2608 2608 99.444 812 2246 1 chrUn.!!$F1 1434
4 TraesCS7D01G238300 chrUn 345388199 345389633 1434 True 2595 2595 99.304 812 2246 1 chrUn.!!$R1 1434
5 TraesCS7D01G238300 chr4D 123320492 123321926 1434 False 2612 2612 99.513 812 2246 1 chr4D.!!$F2 1434
6 TraesCS7D01G238300 chr4D 123288723 123290157 1434 False 2584 2584 99.164 812 2246 1 chr4D.!!$F1 1434
7 TraesCS7D01G238300 chr4D 362200413 362200956 543 True 887 887 96.154 1 543 1 chr4D.!!$R2 542
8 TraesCS7D01G238300 chr4D 372112846 372113375 529 True 874 874 96.422 1 531 1 chr4D.!!$R3 530
9 TraesCS7D01G238300 chr7A 60264320 60265754 1434 False 2595 2595 99.304 812 2246 1 chr7A.!!$F1 1434
10 TraesCS7D01G238300 chr6D 124502543 124503975 1432 False 2593 2593 99.304 812 2246 1 chr6D.!!$F1 1434
11 TraesCS7D01G238300 chr6D 330351017 330351554 537 False 863 863 95.564 1 541 1 chr6D.!!$F2 540
12 TraesCS7D01G238300 chr2B 391090410 391091845 1435 True 2584 2584 99.164 812 2246 1 chr2B.!!$R1 1434
13 TraesCS7D01G238300 chr5D 175819711 175820239 528 True 885 885 96.798 1 531 1 chr5D.!!$R1 530
14 TraesCS7D01G238300 chr5D 528425604 528426130 526 True 878 878 96.610 1 531 1 chr5D.!!$R4 530
15 TraesCS7D01G238300 chr5D 191451284 191451812 528 True 872 872 96.408 1 529 1 chr5D.!!$R2 528
16 TraesCS7D01G238300 chr5D 442214216 442214743 527 True 870 870 96.402 1 528 1 chr5D.!!$R3 527
17 TraesCS7D01G238300 chr2D 197606162 197606687 525 True 878 878 96.774 1 527 1 chr2D.!!$R1 526
18 TraesCS7D01G238300 chr3D 114433569 114434095 526 True 869 869 96.395 1 527 1 chr3D.!!$R1 526
19 TraesCS7D01G238300 chr1D 88400043 88400609 566 False 599 599 85.814 1 568 1 chr1D.!!$F1 567


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
583 584 0.034059 CATATGGCTCGGGTCAGACC 59.966 60.0 11.7 11.7 37.6 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1637 1638 3.961414 GGCCCGTTGAAGTCCCCA 61.961 66.667 0.0 0.0 0.0 4.96 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 1.343142 GTCAAATGGGTCGGCCTTTTT 59.657 47.619 5.77 3.22 34.45 1.94
168 169 2.358737 GTCCCAACGGTGAGCTGG 60.359 66.667 0.00 0.00 0.00 4.85
482 483 5.466819 CATGACAGAAAACGTGACCTACTA 58.533 41.667 0.00 0.00 0.00 1.82
539 540 4.991153 TTTGTAGTGCATGGTGAAAACA 57.009 36.364 0.00 0.00 0.00 2.83
540 541 5.528043 TTTGTAGTGCATGGTGAAAACAT 57.472 34.783 0.00 0.00 0.00 2.71
541 542 4.502171 TGTAGTGCATGGTGAAAACATG 57.498 40.909 0.80 0.80 46.45 3.21
542 543 3.255395 TGTAGTGCATGGTGAAAACATGG 59.745 43.478 7.35 0.00 44.45 3.66
544 545 3.495331 AGTGCATGGTGAAAACATGGTA 58.505 40.909 7.35 0.00 44.45 3.25
545 546 3.255642 AGTGCATGGTGAAAACATGGTAC 59.744 43.478 7.35 0.00 44.45 3.34
546 547 3.005261 GTGCATGGTGAAAACATGGTACA 59.995 43.478 7.35 0.00 44.45 2.90
559 560 1.533625 TGGTACACCAAGCTTGATGC 58.466 50.000 28.05 15.00 44.35 3.91
560 561 0.447801 GGTACACCAAGCTTGATGCG 59.552 55.000 28.05 13.14 40.62 4.73
561 562 1.943968 GGTACACCAAGCTTGATGCGA 60.944 52.381 28.05 10.04 40.62 5.10
562 563 3.447937 GGTACACCAAGCTTGATGCGAA 61.448 50.000 28.05 7.52 40.62 4.70
563 564 4.729277 GGTACACCAAGCTTGATGCGAAT 61.729 47.826 28.05 7.47 40.62 3.34
564 565 6.489787 GGTACACCAAGCTTGATGCGAATC 62.490 50.000 28.05 6.96 40.62 2.52
571 572 2.860062 GCTTGATGCGAATCATATGGC 58.140 47.619 6.98 6.20 35.05 4.40
572 573 2.486982 GCTTGATGCGAATCATATGGCT 59.513 45.455 6.98 0.00 35.05 4.75
573 574 3.425892 GCTTGATGCGAATCATATGGCTC 60.426 47.826 6.98 0.00 35.05 4.70
574 575 2.340337 TGATGCGAATCATATGGCTCG 58.660 47.619 17.77 17.77 35.05 5.03
575 576 1.662629 GATGCGAATCATATGGCTCGG 59.337 52.381 21.25 9.38 35.05 4.63
576 577 0.320683 TGCGAATCATATGGCTCGGG 60.321 55.000 21.25 3.39 0.00 5.14
577 578 0.320771 GCGAATCATATGGCTCGGGT 60.321 55.000 21.25 0.00 0.00 5.28
578 579 1.714794 CGAATCATATGGCTCGGGTC 58.285 55.000 15.51 0.00 0.00 4.46
579 580 1.000843 CGAATCATATGGCTCGGGTCA 59.999 52.381 15.51 0.00 0.00 4.02
580 581 2.693069 GAATCATATGGCTCGGGTCAG 58.307 52.381 0.00 0.00 0.00 3.51
581 582 2.015456 ATCATATGGCTCGGGTCAGA 57.985 50.000 0.00 0.00 0.00 3.27
582 583 1.040646 TCATATGGCTCGGGTCAGAC 58.959 55.000 0.00 0.00 0.00 3.51
583 584 0.034059 CATATGGCTCGGGTCAGACC 59.966 60.000 11.70 11.70 37.60 3.85
584 585 0.105453 ATATGGCTCGGGTCAGACCT 60.105 55.000 19.57 0.00 38.64 3.85
585 586 0.755698 TATGGCTCGGGTCAGACCTC 60.756 60.000 19.57 8.61 38.64 3.85
586 587 2.363147 GGCTCGGGTCAGACCTCT 60.363 66.667 19.57 0.00 38.64 3.69
587 588 1.076923 GGCTCGGGTCAGACCTCTA 60.077 63.158 19.57 4.41 38.64 2.43
588 589 1.104577 GGCTCGGGTCAGACCTCTAG 61.105 65.000 19.57 14.21 38.64 2.43
589 590 1.104577 GCTCGGGTCAGACCTCTAGG 61.105 65.000 19.57 6.84 38.64 3.02
590 591 0.466555 CTCGGGTCAGACCTCTAGGG 60.467 65.000 19.57 5.12 38.64 3.53
601 602 2.478872 CCTCTAGGGTCAGATGGGAA 57.521 55.000 0.00 0.00 0.00 3.97
602 603 2.764269 CCTCTAGGGTCAGATGGGAAA 58.236 52.381 0.00 0.00 0.00 3.13
603 604 2.703007 CCTCTAGGGTCAGATGGGAAAG 59.297 54.545 0.00 0.00 0.00 2.62
604 605 3.631087 CCTCTAGGGTCAGATGGGAAAGA 60.631 52.174 0.00 0.00 0.00 2.52
605 606 4.033709 CTCTAGGGTCAGATGGGAAAGAA 58.966 47.826 0.00 0.00 0.00 2.52
606 607 4.033709 TCTAGGGTCAGATGGGAAAGAAG 58.966 47.826 0.00 0.00 0.00 2.85
607 608 2.637165 AGGGTCAGATGGGAAAGAAGT 58.363 47.619 0.00 0.00 0.00 3.01
608 609 2.989571 AGGGTCAGATGGGAAAGAAGTT 59.010 45.455 0.00 0.00 0.00 2.66
609 610 3.009584 AGGGTCAGATGGGAAAGAAGTTC 59.990 47.826 0.00 0.00 35.28 3.01
622 623 6.080648 GAAAGAAGTTCCCGTTAATTTGGT 57.919 37.500 0.00 0.00 0.00 3.67
623 624 7.205737 GAAAGAAGTTCCCGTTAATTTGGTA 57.794 36.000 0.00 0.00 0.00 3.25
624 625 7.770366 AAAGAAGTTCCCGTTAATTTGGTAT 57.230 32.000 0.00 0.00 0.00 2.73
625 626 8.866970 AAAGAAGTTCCCGTTAATTTGGTATA 57.133 30.769 0.00 0.00 0.00 1.47
626 627 9.470399 AAAGAAGTTCCCGTTAATTTGGTATAT 57.530 29.630 0.00 0.00 0.00 0.86
627 628 8.446599 AGAAGTTCCCGTTAATTTGGTATATG 57.553 34.615 0.00 0.00 0.00 1.78
628 629 8.269317 AGAAGTTCCCGTTAATTTGGTATATGA 58.731 33.333 0.00 0.00 0.00 2.15
629 630 7.797038 AGTTCCCGTTAATTTGGTATATGAC 57.203 36.000 0.00 0.00 0.00 3.06
645 646 7.404139 GTATATGACCAAGTAAAAGTAGCCG 57.596 40.000 0.00 0.00 0.00 5.52
646 647 2.419667 TGACCAAGTAAAAGTAGCCGC 58.580 47.619 0.00 0.00 0.00 6.53
647 648 1.736126 GACCAAGTAAAAGTAGCCGCC 59.264 52.381 0.00 0.00 0.00 6.13
648 649 1.072648 ACCAAGTAAAAGTAGCCGCCA 59.927 47.619 0.00 0.00 0.00 5.69
649 650 2.156098 CCAAGTAAAAGTAGCCGCCAA 58.844 47.619 0.00 0.00 0.00 4.52
650 651 2.161609 CCAAGTAAAAGTAGCCGCCAAG 59.838 50.000 0.00 0.00 0.00 3.61
651 652 2.812011 CAAGTAAAAGTAGCCGCCAAGT 59.188 45.455 0.00 0.00 0.00 3.16
652 653 3.967332 AGTAAAAGTAGCCGCCAAGTA 57.033 42.857 0.00 0.00 0.00 2.24
653 654 4.482952 AGTAAAAGTAGCCGCCAAGTAT 57.517 40.909 0.00 0.00 0.00 2.12
654 655 4.840271 AGTAAAAGTAGCCGCCAAGTATT 58.160 39.130 0.00 0.00 0.00 1.89
655 656 4.874396 AGTAAAAGTAGCCGCCAAGTATTC 59.126 41.667 0.00 0.00 0.00 1.75
656 657 2.327200 AAGTAGCCGCCAAGTATTCC 57.673 50.000 0.00 0.00 0.00 3.01
657 658 1.497161 AGTAGCCGCCAAGTATTCCT 58.503 50.000 0.00 0.00 0.00 3.36
658 659 2.674420 AGTAGCCGCCAAGTATTCCTA 58.326 47.619 0.00 0.00 0.00 2.94
659 660 2.628657 AGTAGCCGCCAAGTATTCCTAG 59.371 50.000 0.00 0.00 0.00 3.02
660 661 0.106894 AGCCGCCAAGTATTCCTAGC 59.893 55.000 0.00 0.00 0.00 3.42
661 662 0.179056 GCCGCCAAGTATTCCTAGCA 60.179 55.000 0.00 0.00 0.00 3.49
662 663 1.871080 CCGCCAAGTATTCCTAGCAG 58.129 55.000 0.00 0.00 0.00 4.24
663 664 1.541233 CCGCCAAGTATTCCTAGCAGG 60.541 57.143 0.00 0.00 36.46 4.85
664 665 1.412710 CGCCAAGTATTCCTAGCAGGA 59.587 52.381 1.25 1.25 44.10 3.86
665 666 2.037772 CGCCAAGTATTCCTAGCAGGAT 59.962 50.000 5.83 0.97 45.34 3.24
666 667 3.495100 CGCCAAGTATTCCTAGCAGGATT 60.495 47.826 5.83 5.58 45.34 3.01
667 668 3.817647 GCCAAGTATTCCTAGCAGGATTG 59.182 47.826 5.83 7.26 45.34 2.67
668 669 3.817647 CCAAGTATTCCTAGCAGGATTGC 59.182 47.826 5.83 6.45 45.34 3.56
680 681 3.754188 CAGGATTGCAAGTTAGACAGC 57.246 47.619 4.94 0.00 0.00 4.40
681 682 2.421424 CAGGATTGCAAGTTAGACAGCC 59.579 50.000 4.94 0.00 0.00 4.85
682 683 2.307098 AGGATTGCAAGTTAGACAGCCT 59.693 45.455 4.94 0.00 0.00 4.58
683 684 2.421424 GGATTGCAAGTTAGACAGCCTG 59.579 50.000 4.94 0.00 0.00 4.85
684 685 1.238439 TTGCAAGTTAGACAGCCTGC 58.762 50.000 0.00 0.00 0.00 4.85
685 686 0.397941 TGCAAGTTAGACAGCCTGCT 59.602 50.000 0.00 0.00 0.00 4.24
699 700 3.976339 CTGCTGGACGGGATAGAAG 57.024 57.895 0.00 0.00 0.00 2.85
700 701 1.403814 CTGCTGGACGGGATAGAAGA 58.596 55.000 0.00 0.00 0.00 2.87
701 702 1.967066 CTGCTGGACGGGATAGAAGAT 59.033 52.381 0.00 0.00 0.00 2.40
702 703 1.688735 TGCTGGACGGGATAGAAGATG 59.311 52.381 0.00 0.00 0.00 2.90
703 704 1.964223 GCTGGACGGGATAGAAGATGA 59.036 52.381 0.00 0.00 0.00 2.92
704 705 2.564947 GCTGGACGGGATAGAAGATGAT 59.435 50.000 0.00 0.00 0.00 2.45
705 706 3.007398 GCTGGACGGGATAGAAGATGATT 59.993 47.826 0.00 0.00 0.00 2.57
706 707 4.503991 GCTGGACGGGATAGAAGATGATTT 60.504 45.833 0.00 0.00 0.00 2.17
707 708 5.615289 CTGGACGGGATAGAAGATGATTTT 58.385 41.667 0.00 0.00 0.00 1.82
708 709 6.001449 TGGACGGGATAGAAGATGATTTTT 57.999 37.500 0.00 0.00 0.00 1.94
736 737 6.038997 GTCCAAGTGACTATGTACTTTCCT 57.961 41.667 0.00 0.00 41.03 3.36
737 738 6.465084 GTCCAAGTGACTATGTACTTTCCTT 58.535 40.000 0.00 0.00 41.03 3.36
738 739 6.590677 GTCCAAGTGACTATGTACTTTCCTTC 59.409 42.308 0.00 0.00 41.03 3.46
739 740 6.497259 TCCAAGTGACTATGTACTTTCCTTCT 59.503 38.462 0.00 0.00 35.08 2.85
740 741 7.672660 TCCAAGTGACTATGTACTTTCCTTCTA 59.327 37.037 0.00 0.00 35.08 2.10
741 742 7.976734 CCAAGTGACTATGTACTTTCCTTCTAG 59.023 40.741 0.00 0.00 35.08 2.43
742 743 7.102847 AGTGACTATGTACTTTCCTTCTAGC 57.897 40.000 0.00 0.00 0.00 3.42
743 744 6.097129 AGTGACTATGTACTTTCCTTCTAGCC 59.903 42.308 0.00 0.00 0.00 3.93
744 745 5.067413 TGACTATGTACTTTCCTTCTAGCCG 59.933 44.000 0.00 0.00 0.00 5.52
745 746 5.198965 ACTATGTACTTTCCTTCTAGCCGA 58.801 41.667 0.00 0.00 0.00 5.54
746 747 5.655532 ACTATGTACTTTCCTTCTAGCCGAA 59.344 40.000 0.00 0.00 0.00 4.30
747 748 5.615925 ATGTACTTTCCTTCTAGCCGAAT 57.384 39.130 0.00 0.00 0.00 3.34
748 749 5.416271 TGTACTTTCCTTCTAGCCGAATT 57.584 39.130 0.00 0.00 0.00 2.17
749 750 5.175859 TGTACTTTCCTTCTAGCCGAATTG 58.824 41.667 0.00 0.00 0.00 2.32
750 751 4.287766 ACTTTCCTTCTAGCCGAATTGT 57.712 40.909 0.00 0.00 0.00 2.71
751 752 5.416271 ACTTTCCTTCTAGCCGAATTGTA 57.584 39.130 0.00 0.00 0.00 2.41
752 753 5.801380 ACTTTCCTTCTAGCCGAATTGTAA 58.199 37.500 0.00 0.00 0.00 2.41
753 754 6.235664 ACTTTCCTTCTAGCCGAATTGTAAA 58.764 36.000 0.00 0.00 0.00 2.01
754 755 6.713450 ACTTTCCTTCTAGCCGAATTGTAAAA 59.287 34.615 0.00 0.00 0.00 1.52
755 756 7.393515 ACTTTCCTTCTAGCCGAATTGTAAAAT 59.606 33.333 0.00 0.00 0.00 1.82
756 757 6.677781 TCCTTCTAGCCGAATTGTAAAATG 57.322 37.500 0.00 0.00 0.00 2.32
757 758 6.411376 TCCTTCTAGCCGAATTGTAAAATGA 58.589 36.000 0.00 0.00 0.00 2.57
758 759 7.054124 TCCTTCTAGCCGAATTGTAAAATGAT 58.946 34.615 0.00 0.00 0.00 2.45
759 760 7.556275 TCCTTCTAGCCGAATTGTAAAATGATT 59.444 33.333 0.00 0.00 0.00 2.57
760 761 7.645340 CCTTCTAGCCGAATTGTAAAATGATTG 59.355 37.037 0.00 0.00 0.00 2.67
761 762 7.624360 TCTAGCCGAATTGTAAAATGATTGT 57.376 32.000 0.00 0.00 0.00 2.71
762 763 7.693952 TCTAGCCGAATTGTAAAATGATTGTC 58.306 34.615 0.00 0.00 0.00 3.18
763 764 6.266168 AGCCGAATTGTAAAATGATTGTCA 57.734 33.333 0.00 0.00 0.00 3.58
764 765 6.866480 AGCCGAATTGTAAAATGATTGTCAT 58.134 32.000 0.00 0.00 39.09 3.06
765 766 6.753279 AGCCGAATTGTAAAATGATTGTCATG 59.247 34.615 0.00 0.00 37.15 3.07
766 767 6.019640 GCCGAATTGTAAAATGATTGTCATGG 60.020 38.462 0.00 0.00 37.15 3.66
767 768 7.035004 CCGAATTGTAAAATGATTGTCATGGT 58.965 34.615 0.00 0.00 37.15 3.55
768 769 8.187480 CCGAATTGTAAAATGATTGTCATGGTA 58.813 33.333 0.00 0.00 37.15 3.25
769 770 9.225201 CGAATTGTAAAATGATTGTCATGGTAG 57.775 33.333 0.00 0.00 37.15 3.18
772 773 7.624360 TGTAAAATGATTGTCATGGTAGACC 57.376 36.000 0.00 0.00 37.15 3.85
773 774 7.402054 TGTAAAATGATTGTCATGGTAGACCT 58.598 34.615 0.00 0.00 37.15 3.85
774 775 7.888021 TGTAAAATGATTGTCATGGTAGACCTT 59.112 33.333 0.00 0.00 37.15 3.50
775 776 7.781324 AAAATGATTGTCATGGTAGACCTTT 57.219 32.000 0.00 0.00 37.15 3.11
776 777 7.781324 AAATGATTGTCATGGTAGACCTTTT 57.219 32.000 0.00 0.00 37.15 2.27
777 778 7.396540 AATGATTGTCATGGTAGACCTTTTC 57.603 36.000 0.00 0.00 37.15 2.29
778 779 4.935205 TGATTGTCATGGTAGACCTTTTCG 59.065 41.667 0.00 0.00 37.73 3.46
779 780 2.695359 TGTCATGGTAGACCTTTTCGC 58.305 47.619 0.00 0.00 37.73 4.70
780 781 2.301870 TGTCATGGTAGACCTTTTCGCT 59.698 45.455 0.00 0.00 37.73 4.93
781 782 3.244422 TGTCATGGTAGACCTTTTCGCTT 60.244 43.478 0.00 0.00 37.73 4.68
782 783 3.371285 GTCATGGTAGACCTTTTCGCTTC 59.629 47.826 0.00 0.00 36.82 3.86
783 784 2.074547 TGGTAGACCTTTTCGCTTCG 57.925 50.000 0.00 0.00 36.82 3.79
784 785 1.614903 TGGTAGACCTTTTCGCTTCGA 59.385 47.619 0.00 0.00 36.82 3.71
785 786 1.991264 GGTAGACCTTTTCGCTTCGAC 59.009 52.381 0.00 0.00 34.89 4.20
786 787 1.991264 GTAGACCTTTTCGCTTCGACC 59.009 52.381 0.00 0.00 34.89 4.79
787 788 0.680061 AGACCTTTTCGCTTCGACCT 59.320 50.000 0.00 0.00 34.89 3.85
788 789 1.069255 GACCTTTTCGCTTCGACCTC 58.931 55.000 0.00 0.00 34.89 3.85
789 790 0.680061 ACCTTTTCGCTTCGACCTCT 59.320 50.000 0.00 0.00 34.89 3.69
790 791 1.071605 CCTTTTCGCTTCGACCTCTG 58.928 55.000 0.00 0.00 34.89 3.35
791 792 1.071605 CTTTTCGCTTCGACCTCTGG 58.928 55.000 0.00 0.00 34.89 3.86
792 793 0.677288 TTTTCGCTTCGACCTCTGGA 59.323 50.000 0.00 0.00 34.89 3.86
793 794 0.038526 TTTCGCTTCGACCTCTGGAC 60.039 55.000 0.00 0.00 34.89 4.02
794 795 2.196382 TTCGCTTCGACCTCTGGACG 62.196 60.000 2.38 2.38 41.67 4.79
795 796 2.182030 GCTTCGACCTCTGGACGG 59.818 66.667 8.36 0.00 40.79 4.79
796 797 2.341101 GCTTCGACCTCTGGACGGA 61.341 63.158 8.36 0.00 40.79 4.69
797 798 1.874345 GCTTCGACCTCTGGACGGAA 61.874 60.000 8.36 2.33 40.79 4.30
798 799 0.171455 CTTCGACCTCTGGACGGAAG 59.829 60.000 8.36 7.21 40.79 3.46
799 800 1.248785 TTCGACCTCTGGACGGAAGG 61.249 60.000 8.36 0.00 40.79 3.46
800 801 1.977544 CGACCTCTGGACGGAAGGT 60.978 63.158 0.92 0.00 37.24 3.50
801 802 1.592223 GACCTCTGGACGGAAGGTG 59.408 63.158 0.00 0.00 32.35 4.00
802 803 2.266055 CCTCTGGACGGAAGGTGC 59.734 66.667 0.00 0.00 37.52 5.01
803 804 2.583441 CCTCTGGACGGAAGGTGCA 61.583 63.158 0.00 0.00 45.48 4.57
806 807 3.059982 TGGACGGAAGGTGCAGAG 58.940 61.111 0.00 0.00 42.55 3.35
807 808 1.837051 TGGACGGAAGGTGCAGAGT 60.837 57.895 0.00 0.00 42.55 3.24
808 809 1.374758 GGACGGAAGGTGCAGAGTG 60.375 63.158 0.00 0.00 36.89 3.51
809 810 1.367840 GACGGAAGGTGCAGAGTGT 59.632 57.895 0.00 0.00 0.00 3.55
810 811 0.249911 GACGGAAGGTGCAGAGTGTT 60.250 55.000 0.00 0.00 0.00 3.32
1697 1698 5.184671 GCAATTCTTCACCTTTTCCTCAGAT 59.815 40.000 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 1.281867 CAACAGAGGCCCATTCCTGTA 59.718 52.381 0.00 0.00 38.75 2.74
168 169 2.617274 GGCTGGAGGAAACACGTGC 61.617 63.158 17.22 0.00 0.00 5.34
482 483 3.616821 CCGTGATGATACGTGTTTGTCAT 59.383 43.478 0.00 0.04 42.24 3.06
532 533 3.561143 AGCTTGGTGTACCATGTTTTCA 58.439 40.909 15.66 0.00 46.97 2.69
533 534 4.037446 TCAAGCTTGGTGTACCATGTTTTC 59.963 41.667 25.73 1.81 46.97 2.29
536 537 3.222173 TCAAGCTTGGTGTACCATGTT 57.778 42.857 25.73 9.02 46.97 2.71
538 539 2.159338 GCATCAAGCTTGGTGTACCATG 60.159 50.000 34.05 23.81 46.97 3.66
539 540 2.094675 GCATCAAGCTTGGTGTACCAT 58.905 47.619 34.05 14.03 46.97 3.55
540 541 1.533625 GCATCAAGCTTGGTGTACCA 58.466 50.000 34.05 12.36 45.94 3.25
541 542 0.447801 CGCATCAAGCTTGGTGTACC 59.552 55.000 34.05 20.19 41.32 3.34
542 543 1.438651 TCGCATCAAGCTTGGTGTAC 58.561 50.000 34.05 20.83 41.32 2.90
544 545 1.470098 GATTCGCATCAAGCTTGGTGT 59.530 47.619 34.05 19.00 41.32 4.16
545 546 1.469703 TGATTCGCATCAAGCTTGGTG 59.530 47.619 31.31 31.31 42.15 4.17
546 547 1.825090 TGATTCGCATCAAGCTTGGT 58.175 45.000 25.73 17.40 42.61 3.67
547 548 4.473199 CATATGATTCGCATCAAGCTTGG 58.527 43.478 25.73 12.18 42.93 3.61
548 549 4.473199 CCATATGATTCGCATCAAGCTTG 58.527 43.478 20.81 20.81 42.93 4.01
549 550 3.057736 GCCATATGATTCGCATCAAGCTT 60.058 43.478 3.65 0.00 42.93 3.74
550 551 2.486982 GCCATATGATTCGCATCAAGCT 59.513 45.455 3.65 0.00 42.93 3.74
551 552 2.486982 AGCCATATGATTCGCATCAAGC 59.513 45.455 3.65 3.54 42.93 4.01
552 553 3.181523 CGAGCCATATGATTCGCATCAAG 60.182 47.826 3.65 0.00 42.93 3.02
553 554 2.738314 CGAGCCATATGATTCGCATCAA 59.262 45.455 3.65 0.00 42.93 2.57
554 555 2.340337 CGAGCCATATGATTCGCATCA 58.660 47.619 3.65 0.00 43.85 3.07
555 556 1.662629 CCGAGCCATATGATTCGCATC 59.337 52.381 17.90 6.99 38.44 3.91
556 557 1.676916 CCCGAGCCATATGATTCGCAT 60.677 52.381 17.90 0.00 41.08 4.73
557 558 0.320683 CCCGAGCCATATGATTCGCA 60.321 55.000 17.90 0.00 0.00 5.10
558 559 0.320771 ACCCGAGCCATATGATTCGC 60.321 55.000 17.90 8.06 0.00 4.70
559 560 1.000843 TGACCCGAGCCATATGATTCG 59.999 52.381 16.92 16.92 0.00 3.34
560 561 2.300152 TCTGACCCGAGCCATATGATTC 59.700 50.000 3.65 0.39 0.00 2.52
561 562 2.037772 GTCTGACCCGAGCCATATGATT 59.962 50.000 3.65 0.00 0.00 2.57
562 563 1.620819 GTCTGACCCGAGCCATATGAT 59.379 52.381 3.65 0.00 0.00 2.45
563 564 1.040646 GTCTGACCCGAGCCATATGA 58.959 55.000 3.65 0.00 0.00 2.15
564 565 0.034059 GGTCTGACCCGAGCCATATG 59.966 60.000 16.14 0.00 30.04 1.78
565 566 0.105453 AGGTCTGACCCGAGCCATAT 60.105 55.000 22.81 0.00 39.75 1.78
566 567 0.755698 GAGGTCTGACCCGAGCCATA 60.756 60.000 22.81 0.00 39.75 2.74
567 568 2.039624 AGGTCTGACCCGAGCCAT 59.960 61.111 22.81 0.00 39.75 4.40
568 569 1.859841 TAGAGGTCTGACCCGAGCCA 61.860 60.000 22.81 0.48 39.75 4.75
569 570 1.076923 TAGAGGTCTGACCCGAGCC 60.077 63.158 22.81 7.76 39.75 4.70
570 571 1.104577 CCTAGAGGTCTGACCCGAGC 61.105 65.000 22.81 10.35 39.75 5.03
571 572 0.466555 CCCTAGAGGTCTGACCCGAG 60.467 65.000 22.81 17.61 39.75 4.63
572 573 1.613610 CCCTAGAGGTCTGACCCGA 59.386 63.158 22.81 10.00 39.75 5.14
573 574 4.261701 CCCTAGAGGTCTGACCCG 57.738 66.667 22.81 9.26 39.75 5.28
582 583 2.478872 TTCCCATCTGACCCTAGAGG 57.521 55.000 0.00 0.00 43.78 3.69
583 584 3.647636 TCTTTCCCATCTGACCCTAGAG 58.352 50.000 0.00 0.00 0.00 2.43
584 585 3.776731 TCTTTCCCATCTGACCCTAGA 57.223 47.619 0.00 0.00 0.00 2.43
585 586 3.777522 ACTTCTTTCCCATCTGACCCTAG 59.222 47.826 0.00 0.00 0.00 3.02
586 587 3.803340 ACTTCTTTCCCATCTGACCCTA 58.197 45.455 0.00 0.00 0.00 3.53
587 588 2.637165 ACTTCTTTCCCATCTGACCCT 58.363 47.619 0.00 0.00 0.00 4.34
588 589 3.348119 GAACTTCTTTCCCATCTGACCC 58.652 50.000 0.00 0.00 0.00 4.46
599 600 6.080648 ACCAAATTAACGGGAACTTCTTTC 57.919 37.500 0.00 0.00 0.00 2.62
600 601 7.770366 ATACCAAATTAACGGGAACTTCTTT 57.230 32.000 0.00 0.00 0.00 2.52
601 602 8.899771 CATATACCAAATTAACGGGAACTTCTT 58.100 33.333 0.00 0.00 0.00 2.52
602 603 8.269317 TCATATACCAAATTAACGGGAACTTCT 58.731 33.333 0.00 0.00 0.00 2.85
603 604 8.340443 GTCATATACCAAATTAACGGGAACTTC 58.660 37.037 0.00 0.00 0.00 3.01
604 605 8.217131 GTCATATACCAAATTAACGGGAACTT 57.783 34.615 0.00 0.00 0.00 2.66
605 606 7.797038 GTCATATACCAAATTAACGGGAACT 57.203 36.000 0.00 0.00 0.00 3.01
621 622 6.073927 GCGGCTACTTTTACTTGGTCATATAC 60.074 42.308 0.00 0.00 0.00 1.47
622 623 5.987347 GCGGCTACTTTTACTTGGTCATATA 59.013 40.000 0.00 0.00 0.00 0.86
623 624 4.814771 GCGGCTACTTTTACTTGGTCATAT 59.185 41.667 0.00 0.00 0.00 1.78
624 625 4.186159 GCGGCTACTTTTACTTGGTCATA 58.814 43.478 0.00 0.00 0.00 2.15
625 626 3.007635 GCGGCTACTTTTACTTGGTCAT 58.992 45.455 0.00 0.00 0.00 3.06
626 627 2.419667 GCGGCTACTTTTACTTGGTCA 58.580 47.619 0.00 0.00 0.00 4.02
627 628 1.736126 GGCGGCTACTTTTACTTGGTC 59.264 52.381 0.00 0.00 0.00 4.02
628 629 1.072648 TGGCGGCTACTTTTACTTGGT 59.927 47.619 11.43 0.00 0.00 3.67
629 630 1.816074 TGGCGGCTACTTTTACTTGG 58.184 50.000 11.43 0.00 0.00 3.61
630 631 2.812011 ACTTGGCGGCTACTTTTACTTG 59.188 45.455 11.43 0.00 0.00 3.16
631 632 3.136009 ACTTGGCGGCTACTTTTACTT 57.864 42.857 11.43 0.00 0.00 2.24
632 633 2.853235 ACTTGGCGGCTACTTTTACT 57.147 45.000 11.43 0.00 0.00 2.24
633 634 4.034858 GGAATACTTGGCGGCTACTTTTAC 59.965 45.833 11.43 0.00 0.00 2.01
634 635 4.080751 AGGAATACTTGGCGGCTACTTTTA 60.081 41.667 11.43 0.00 0.00 1.52
635 636 3.014623 GGAATACTTGGCGGCTACTTTT 58.985 45.455 11.43 0.00 0.00 2.27
636 637 2.238898 AGGAATACTTGGCGGCTACTTT 59.761 45.455 11.43 0.00 0.00 2.66
637 638 1.838077 AGGAATACTTGGCGGCTACTT 59.162 47.619 11.43 0.00 0.00 2.24
638 639 1.497161 AGGAATACTTGGCGGCTACT 58.503 50.000 11.43 0.00 0.00 2.57
639 640 2.866855 GCTAGGAATACTTGGCGGCTAC 60.867 54.545 11.43 0.00 0.00 3.58
640 641 1.343465 GCTAGGAATACTTGGCGGCTA 59.657 52.381 11.43 0.46 0.00 3.93
641 642 0.106894 GCTAGGAATACTTGGCGGCT 59.893 55.000 11.43 0.00 0.00 5.52
642 643 0.179056 TGCTAGGAATACTTGGCGGC 60.179 55.000 0.00 0.00 32.01 6.53
643 644 1.541233 CCTGCTAGGAATACTTGGCGG 60.541 57.143 0.00 0.00 37.67 6.13
644 645 1.412710 TCCTGCTAGGAATACTTGGCG 59.587 52.381 2.78 0.00 42.51 5.69
660 661 2.421424 GGCTGTCTAACTTGCAATCCTG 59.579 50.000 0.00 0.00 0.00 3.86
661 662 2.307098 AGGCTGTCTAACTTGCAATCCT 59.693 45.455 0.00 0.00 0.00 3.24
662 663 2.421424 CAGGCTGTCTAACTTGCAATCC 59.579 50.000 6.28 0.00 0.00 3.01
663 664 2.159462 GCAGGCTGTCTAACTTGCAATC 60.159 50.000 17.16 0.00 0.00 2.67
664 665 1.815003 GCAGGCTGTCTAACTTGCAAT 59.185 47.619 17.16 0.00 0.00 3.56
665 666 1.202806 AGCAGGCTGTCTAACTTGCAA 60.203 47.619 17.16 0.00 0.00 4.08
666 667 0.397941 AGCAGGCTGTCTAACTTGCA 59.602 50.000 17.16 0.00 0.00 4.08
667 668 0.801251 CAGCAGGCTGTCTAACTTGC 59.199 55.000 17.16 0.00 39.10 4.01
668 669 1.002430 TCCAGCAGGCTGTCTAACTTG 59.998 52.381 17.16 0.19 42.15 3.16
669 670 1.002544 GTCCAGCAGGCTGTCTAACTT 59.997 52.381 17.16 0.00 42.15 2.66
670 671 0.610687 GTCCAGCAGGCTGTCTAACT 59.389 55.000 17.16 0.59 42.15 2.24
671 672 0.737715 CGTCCAGCAGGCTGTCTAAC 60.738 60.000 17.16 12.96 42.15 2.34
672 673 1.591703 CGTCCAGCAGGCTGTCTAA 59.408 57.895 17.16 3.21 42.15 2.10
673 674 2.351244 CCGTCCAGCAGGCTGTCTA 61.351 63.158 17.16 2.73 42.15 2.59
674 675 3.699894 CCGTCCAGCAGGCTGTCT 61.700 66.667 17.16 10.85 42.15 3.41
675 676 4.767255 CCCGTCCAGCAGGCTGTC 62.767 72.222 17.16 8.57 42.15 3.51
677 678 2.374830 CTATCCCGTCCAGCAGGCTG 62.375 65.000 10.94 10.94 43.26 4.85
678 679 2.041922 TATCCCGTCCAGCAGGCT 60.042 61.111 0.00 0.00 33.74 4.58
679 680 1.686325 TTCTATCCCGTCCAGCAGGC 61.686 60.000 0.00 0.00 33.74 4.85
680 681 0.390860 CTTCTATCCCGTCCAGCAGG 59.609 60.000 0.00 0.00 0.00 4.85
681 682 1.403814 TCTTCTATCCCGTCCAGCAG 58.596 55.000 0.00 0.00 0.00 4.24
682 683 1.688735 CATCTTCTATCCCGTCCAGCA 59.311 52.381 0.00 0.00 0.00 4.41
683 684 1.964223 TCATCTTCTATCCCGTCCAGC 59.036 52.381 0.00 0.00 0.00 4.85
684 685 4.881019 AATCATCTTCTATCCCGTCCAG 57.119 45.455 0.00 0.00 0.00 3.86
685 686 5.630415 AAAATCATCTTCTATCCCGTCCA 57.370 39.130 0.00 0.00 0.00 4.02
714 715 6.497259 AGAAGGAAAGTACATAGTCACTTGGA 59.503 38.462 0.00 0.00 35.23 3.53
715 716 6.702329 AGAAGGAAAGTACATAGTCACTTGG 58.298 40.000 0.00 0.00 35.23 3.61
716 717 7.489757 GCTAGAAGGAAAGTACATAGTCACTTG 59.510 40.741 0.00 0.00 35.23 3.16
717 718 7.363968 GGCTAGAAGGAAAGTACATAGTCACTT 60.364 40.741 0.00 0.00 36.56 3.16
718 719 6.097129 GGCTAGAAGGAAAGTACATAGTCACT 59.903 42.308 0.00 0.00 0.00 3.41
719 720 6.274579 GGCTAGAAGGAAAGTACATAGTCAC 58.725 44.000 0.00 0.00 0.00 3.67
720 721 5.067413 CGGCTAGAAGGAAAGTACATAGTCA 59.933 44.000 0.00 0.00 0.00 3.41
721 722 5.298777 TCGGCTAGAAGGAAAGTACATAGTC 59.701 44.000 0.00 0.00 0.00 2.59
722 723 5.198965 TCGGCTAGAAGGAAAGTACATAGT 58.801 41.667 0.00 0.00 0.00 2.12
723 724 5.769484 TCGGCTAGAAGGAAAGTACATAG 57.231 43.478 0.00 0.00 0.00 2.23
724 725 6.726490 ATTCGGCTAGAAGGAAAGTACATA 57.274 37.500 0.00 0.00 42.92 2.29
725 726 5.615925 ATTCGGCTAGAAGGAAAGTACAT 57.384 39.130 0.00 0.00 42.92 2.29
726 727 5.175859 CAATTCGGCTAGAAGGAAAGTACA 58.824 41.667 0.00 0.00 42.92 2.90
727 728 5.176592 ACAATTCGGCTAGAAGGAAAGTAC 58.823 41.667 0.00 0.00 42.92 2.73
728 729 5.416271 ACAATTCGGCTAGAAGGAAAGTA 57.584 39.130 0.00 0.00 42.92 2.24
729 730 4.287766 ACAATTCGGCTAGAAGGAAAGT 57.712 40.909 0.00 0.00 42.92 2.66
730 731 6.737254 TTTACAATTCGGCTAGAAGGAAAG 57.263 37.500 0.00 0.00 42.92 2.62
731 732 7.392113 TCATTTTACAATTCGGCTAGAAGGAAA 59.608 33.333 0.00 0.00 42.92 3.13
732 733 6.882140 TCATTTTACAATTCGGCTAGAAGGAA 59.118 34.615 0.00 0.00 42.92 3.36
733 734 6.411376 TCATTTTACAATTCGGCTAGAAGGA 58.589 36.000 0.00 0.00 42.92 3.36
734 735 6.677781 TCATTTTACAATTCGGCTAGAAGG 57.322 37.500 0.00 0.30 42.92 3.46
735 736 8.184192 ACAATCATTTTACAATTCGGCTAGAAG 58.816 33.333 0.00 0.00 42.92 2.85
736 737 8.050778 ACAATCATTTTACAATTCGGCTAGAA 57.949 30.769 0.00 0.00 43.93 2.10
737 738 7.335673 TGACAATCATTTTACAATTCGGCTAGA 59.664 33.333 0.00 0.00 0.00 2.43
738 739 7.471721 TGACAATCATTTTACAATTCGGCTAG 58.528 34.615 0.00 0.00 0.00 3.42
739 740 7.384439 TGACAATCATTTTACAATTCGGCTA 57.616 32.000 0.00 0.00 0.00 3.93
740 741 6.266168 TGACAATCATTTTACAATTCGGCT 57.734 33.333 0.00 0.00 0.00 5.52
741 742 6.019640 CCATGACAATCATTTTACAATTCGGC 60.020 38.462 0.00 0.00 34.28 5.54
742 743 7.035004 ACCATGACAATCATTTTACAATTCGG 58.965 34.615 0.00 0.00 34.28 4.30
743 744 9.225201 CTACCATGACAATCATTTTACAATTCG 57.775 33.333 0.00 0.00 34.28 3.34
746 747 8.686334 GGTCTACCATGACAATCATTTTACAAT 58.314 33.333 0.00 0.00 34.28 2.71
747 748 7.888021 AGGTCTACCATGACAATCATTTTACAA 59.112 33.333 1.26 0.00 34.28 2.41
748 749 7.402054 AGGTCTACCATGACAATCATTTTACA 58.598 34.615 1.26 0.00 34.28 2.41
749 750 7.865706 AGGTCTACCATGACAATCATTTTAC 57.134 36.000 1.26 0.00 34.28 2.01
750 751 8.877864 AAAGGTCTACCATGACAATCATTTTA 57.122 30.769 1.26 0.00 34.28 1.52
751 752 7.781324 AAAGGTCTACCATGACAATCATTTT 57.219 32.000 1.26 0.00 34.28 1.82
752 753 7.362056 CGAAAAGGTCTACCATGACAATCATTT 60.362 37.037 1.26 0.00 34.28 2.32
753 754 6.094048 CGAAAAGGTCTACCATGACAATCATT 59.906 38.462 1.26 0.00 34.28 2.57
754 755 5.586243 CGAAAAGGTCTACCATGACAATCAT 59.414 40.000 1.26 0.00 37.65 2.45
755 756 4.935205 CGAAAAGGTCTACCATGACAATCA 59.065 41.667 1.26 0.00 38.61 2.57
756 757 4.201822 GCGAAAAGGTCTACCATGACAATC 60.202 45.833 1.26 0.00 38.61 2.67
757 758 3.689649 GCGAAAAGGTCTACCATGACAAT 59.310 43.478 1.26 0.00 38.61 2.71
758 759 3.071479 GCGAAAAGGTCTACCATGACAA 58.929 45.455 1.26 0.00 38.61 3.18
759 760 2.301870 AGCGAAAAGGTCTACCATGACA 59.698 45.455 1.26 0.00 38.61 3.58
760 761 2.973945 AGCGAAAAGGTCTACCATGAC 58.026 47.619 1.26 0.00 38.89 3.06
761 762 3.596214 GAAGCGAAAAGGTCTACCATGA 58.404 45.455 1.26 0.00 38.89 3.07
762 763 2.348666 CGAAGCGAAAAGGTCTACCATG 59.651 50.000 1.26 0.00 38.89 3.66
763 764 2.232941 TCGAAGCGAAAAGGTCTACCAT 59.767 45.455 1.26 0.00 33.28 3.55
764 765 1.614903 TCGAAGCGAAAAGGTCTACCA 59.385 47.619 1.26 0.00 33.28 3.25
765 766 1.991264 GTCGAAGCGAAAAGGTCTACC 59.009 52.381 0.00 0.00 37.72 3.18
766 767 1.991264 GGTCGAAGCGAAAAGGTCTAC 59.009 52.381 0.00 0.00 37.72 2.59
767 768 1.891150 AGGTCGAAGCGAAAAGGTCTA 59.109 47.619 0.00 0.00 37.72 2.59
768 769 0.680061 AGGTCGAAGCGAAAAGGTCT 59.320 50.000 0.00 0.00 37.72 3.85
769 770 1.069255 GAGGTCGAAGCGAAAAGGTC 58.931 55.000 0.00 0.00 37.72 3.85
770 771 0.680061 AGAGGTCGAAGCGAAAAGGT 59.320 50.000 0.00 0.00 37.72 3.50
771 772 1.071605 CAGAGGTCGAAGCGAAAAGG 58.928 55.000 0.00 0.00 37.72 3.11
772 773 1.071605 CCAGAGGTCGAAGCGAAAAG 58.928 55.000 0.00 0.00 37.72 2.27
773 774 0.677288 TCCAGAGGTCGAAGCGAAAA 59.323 50.000 0.00 0.00 37.72 2.29
774 775 0.038526 GTCCAGAGGTCGAAGCGAAA 60.039 55.000 0.00 0.00 37.72 3.46
775 776 1.585006 GTCCAGAGGTCGAAGCGAA 59.415 57.895 0.00 0.00 37.72 4.70
776 777 2.687805 CGTCCAGAGGTCGAAGCGA 61.688 63.158 0.00 0.00 36.43 4.93
777 778 2.202492 CGTCCAGAGGTCGAAGCG 60.202 66.667 0.00 0.00 36.43 4.68
778 779 1.874345 TTCCGTCCAGAGGTCGAAGC 61.874 60.000 4.33 0.00 36.43 3.86
779 780 0.171455 CTTCCGTCCAGAGGTCGAAG 59.829 60.000 4.33 3.35 36.43 3.79
780 781 1.248785 CCTTCCGTCCAGAGGTCGAA 61.249 60.000 4.33 0.00 36.43 3.71
781 782 1.677966 CCTTCCGTCCAGAGGTCGA 60.678 63.158 4.33 0.00 36.43 4.20
782 783 1.977544 ACCTTCCGTCCAGAGGTCG 60.978 63.158 0.00 0.00 39.55 4.79
783 784 1.592223 CACCTTCCGTCCAGAGGTC 59.408 63.158 0.00 0.00 41.72 3.85
784 785 2.584391 GCACCTTCCGTCCAGAGGT 61.584 63.158 0.00 0.00 44.39 3.85
785 786 2.266055 GCACCTTCCGTCCAGAGG 59.734 66.667 0.00 0.00 36.62 3.69
786 787 1.079543 CTGCACCTTCCGTCCAGAG 60.080 63.158 0.00 0.00 0.00 3.35
787 788 1.533033 TCTGCACCTTCCGTCCAGA 60.533 57.895 0.00 0.00 0.00 3.86
788 789 1.079543 CTCTGCACCTTCCGTCCAG 60.080 63.158 0.00 0.00 0.00 3.86
789 790 1.837051 ACTCTGCACCTTCCGTCCA 60.837 57.895 0.00 0.00 0.00 4.02
790 791 1.374758 CACTCTGCACCTTCCGTCC 60.375 63.158 0.00 0.00 0.00 4.79
791 792 0.249911 AACACTCTGCACCTTCCGTC 60.250 55.000 0.00 0.00 0.00 4.79
792 793 0.180406 AAACACTCTGCACCTTCCGT 59.820 50.000 0.00 0.00 0.00 4.69
793 794 1.002468 CAAAACACTCTGCACCTTCCG 60.002 52.381 0.00 0.00 0.00 4.30
794 795 1.269257 GCAAAACACTCTGCACCTTCC 60.269 52.381 0.00 0.00 38.48 3.46
795 796 1.405105 TGCAAAACACTCTGCACCTTC 59.595 47.619 0.00 0.00 43.44 3.46
796 797 1.473258 TGCAAAACACTCTGCACCTT 58.527 45.000 0.00 0.00 43.44 3.50
797 798 3.189568 TGCAAAACACTCTGCACCT 57.810 47.368 0.00 0.00 43.44 4.00
800 801 2.090760 TGACTTGCAAAACACTCTGCA 58.909 42.857 0.00 0.00 46.50 4.41
801 802 2.849880 TGACTTGCAAAACACTCTGC 57.150 45.000 0.00 0.00 39.09 4.26
802 803 4.361451 ACTTGACTTGCAAAACACTCTG 57.639 40.909 0.00 0.00 35.74 3.35
803 804 5.163513 CAAACTTGACTTGCAAAACACTCT 58.836 37.500 0.00 0.00 35.74 3.24
804 805 4.327087 CCAAACTTGACTTGCAAAACACTC 59.673 41.667 0.00 0.00 35.74 3.51
805 806 4.244862 CCAAACTTGACTTGCAAAACACT 58.755 39.130 0.00 0.00 35.74 3.55
806 807 3.370672 CCCAAACTTGACTTGCAAAACAC 59.629 43.478 0.00 0.00 35.74 3.32
807 808 3.594134 CCCAAACTTGACTTGCAAAACA 58.406 40.909 0.00 0.49 35.74 2.83
808 809 2.935849 CCCCAAACTTGACTTGCAAAAC 59.064 45.455 0.00 0.00 35.74 2.43
809 810 2.093235 CCCCCAAACTTGACTTGCAAAA 60.093 45.455 0.00 0.00 35.74 2.44
810 811 1.484240 CCCCCAAACTTGACTTGCAAA 59.516 47.619 0.00 0.00 35.74 3.68
1637 1638 3.961414 GGCCCGTTGAAGTCCCCA 61.961 66.667 0.00 0.00 0.00 4.96
1697 1698 6.945435 TCAAGTAAGAAAATGCATTCCCACTA 59.055 34.615 13.38 0.00 0.00 2.74



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.