Multiple sequence alignment - TraesCS7D01G238000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G238000 chr7D 100.000 6699 0 0 1 6699 203040251 203046949 0.000000e+00 12371.0
1 TraesCS7D01G238000 chr7D 98.053 873 12 3 3546 4413 518669936 518670808 0.000000e+00 1513.0
2 TraesCS7D01G238000 chr7D 88.333 60 6 1 6506 6564 66089855 66089796 3.350000e-08 71.3
3 TraesCS7D01G238000 chr7A 91.687 3609 173 48 1 3548 214859405 214855863 0.000000e+00 4885.0
4 TraesCS7D01G238000 chr7A 94.576 885 41 5 4444 5326 214855876 214854997 0.000000e+00 1362.0
5 TraesCS7D01G238000 chr7A 90.084 948 56 18 5464 6376 214854910 214853966 0.000000e+00 1195.0
6 TraesCS7D01G238000 chr7A 76.642 274 59 5 1446 1716 19938823 19938552 5.410000e-31 147.0
7 TraesCS7D01G238000 chr7A 80.899 178 16 11 3564 3726 137769082 137769256 2.540000e-24 124.0
8 TraesCS7D01G238000 chr7B 95.354 2475 72 11 1080 3548 166770861 166773298 0.000000e+00 3893.0
9 TraesCS7D01G238000 chr7B 94.509 1038 37 8 1 1022 166769423 166770456 0.000000e+00 1583.0
10 TraesCS7D01G238000 chr7B 93.033 976 55 8 4443 5415 166773284 166774249 0.000000e+00 1413.0
11 TraesCS7D01G238000 chr7B 91.335 1004 54 16 5448 6423 166774250 166775248 0.000000e+00 1341.0
12 TraesCS7D01G238000 chr2D 98.624 872 8 2 3546 4413 337396484 337397355 0.000000e+00 1541.0
13 TraesCS7D01G238000 chr2D 96.465 877 15 7 3545 4416 555162870 555162005 0.000000e+00 1434.0
14 TraesCS7D01G238000 chr2D 82.320 181 13 13 3546 3726 393689041 393688880 9.060000e-29 139.0
15 TraesCS7D01G238000 chr2D 82.320 181 13 13 3546 3726 623999575 623999414 9.060000e-29 139.0
16 TraesCS7D01G238000 chr4D 98.288 876 11 2 3542 4413 323550163 323551038 0.000000e+00 1531.0
17 TraesCS7D01G238000 chr4D 97.166 882 13 2 3539 4416 386536505 386535632 0.000000e+00 1480.0
18 TraesCS7D01G238000 chr4D 96.800 875 14 3 3546 4416 371146716 371145852 0.000000e+00 1448.0
19 TraesCS7D01G238000 chr4D 96.429 28 1 0 4426 4453 386535644 386535617 5.600000e-01 47.3
20 TraesCS7D01G238000 chr5D 97.275 844 12 4 3546 4385 294332479 294333315 0.000000e+00 1421.0
21 TraesCS7D01G238000 chr1D 95.757 872 21 3 3546 4413 103681524 103682383 0.000000e+00 1391.0
22 TraesCS7D01G238000 chr1D 98.030 660 3 1 3564 4213 393689806 393689147 0.000000e+00 1138.0
23 TraesCS7D01G238000 chr6A 95.006 881 39 3 3540 4416 66262320 66261441 0.000000e+00 1378.0
24 TraesCS7D01G238000 chr6A 79.722 720 72 43 3761 4448 169508862 169508185 2.850000e-123 453.0
25 TraesCS7D01G238000 chr2A 95.260 865 13 3 3546 4406 680275897 680275057 0.000000e+00 1345.0
26 TraesCS7D01G238000 chr2A 93.898 885 16 8 3546 4416 37080976 37080116 0.000000e+00 1301.0
27 TraesCS7D01G238000 chr4A 79.668 723 73 44 3758 4448 615518994 615519674 2.850000e-123 453.0
28 TraesCS7D01G238000 chr4A 92.982 57 3 1 4396 4451 314680632 314680576 1.550000e-11 82.4
29 TraesCS7D01G238000 chr2B 79.215 688 78 41 3782 4451 520929908 520930548 1.040000e-112 418.0
30 TraesCS7D01G238000 chr2B 91.156 147 3 1 3545 3691 520921922 520922058 2.470000e-44 191.0
31 TraesCS7D01G238000 chr5B 82.836 268 15 13 4190 4448 219091707 219091952 1.890000e-50 211.0
32 TraesCS7D01G238000 chr6B 98.611 72 0 1 3242 3313 148826983 148827053 7.050000e-25 126.0
33 TraesCS7D01G238000 chr6B 92.958 71 3 2 4441 4510 148827220 148827289 1.190000e-17 102.0
34 TraesCS7D01G238000 chr3D 93.590 78 4 1 3242 3319 575924312 575924236 1.530000e-21 115.0
35 TraesCS7D01G238000 chr3D 86.250 80 5 4 4441 4519 575924075 575924001 1.550000e-11 82.4
36 TraesCS7D01G238000 chr3B 79.054 148 27 4 6419 6563 228394145 228394291 1.540000e-16 99.0
37 TraesCS7D01G238000 chr5A 96.364 55 2 0 4396 4450 621750783 621750729 2.570000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G238000 chr7D 203040251 203046949 6698 False 12371.000000 12371 100.000000 1 6699 1 chr7D.!!$F1 6698
1 TraesCS7D01G238000 chr7D 518669936 518670808 872 False 1513.000000 1513 98.053000 3546 4413 1 chr7D.!!$F2 867
2 TraesCS7D01G238000 chr7A 214853966 214859405 5439 True 2480.666667 4885 92.115667 1 6376 3 chr7A.!!$R2 6375
3 TraesCS7D01G238000 chr7B 166769423 166775248 5825 False 2057.500000 3893 93.557750 1 6423 4 chr7B.!!$F1 6422
4 TraesCS7D01G238000 chr2D 337396484 337397355 871 False 1541.000000 1541 98.624000 3546 4413 1 chr2D.!!$F1 867
5 TraesCS7D01G238000 chr2D 555162005 555162870 865 True 1434.000000 1434 96.465000 3545 4416 1 chr2D.!!$R2 871
6 TraesCS7D01G238000 chr4D 323550163 323551038 875 False 1531.000000 1531 98.288000 3542 4413 1 chr4D.!!$F1 871
7 TraesCS7D01G238000 chr4D 371145852 371146716 864 True 1448.000000 1448 96.800000 3546 4416 1 chr4D.!!$R1 870
8 TraesCS7D01G238000 chr4D 386535617 386536505 888 True 763.650000 1480 96.797500 3539 4453 2 chr4D.!!$R2 914
9 TraesCS7D01G238000 chr5D 294332479 294333315 836 False 1421.000000 1421 97.275000 3546 4385 1 chr5D.!!$F1 839
10 TraesCS7D01G238000 chr1D 103681524 103682383 859 False 1391.000000 1391 95.757000 3546 4413 1 chr1D.!!$F1 867
11 TraesCS7D01G238000 chr1D 393689147 393689806 659 True 1138.000000 1138 98.030000 3564 4213 1 chr1D.!!$R1 649
12 TraesCS7D01G238000 chr6A 66261441 66262320 879 True 1378.000000 1378 95.006000 3540 4416 1 chr6A.!!$R1 876
13 TraesCS7D01G238000 chr6A 169508185 169508862 677 True 453.000000 453 79.722000 3761 4448 1 chr6A.!!$R2 687
14 TraesCS7D01G238000 chr2A 680275057 680275897 840 True 1345.000000 1345 95.260000 3546 4406 1 chr2A.!!$R2 860
15 TraesCS7D01G238000 chr2A 37080116 37080976 860 True 1301.000000 1301 93.898000 3546 4416 1 chr2A.!!$R1 870
16 TraesCS7D01G238000 chr4A 615518994 615519674 680 False 453.000000 453 79.668000 3758 4448 1 chr4A.!!$F1 690
17 TraesCS7D01G238000 chr2B 520929908 520930548 640 False 418.000000 418 79.215000 3782 4451 1 chr2B.!!$F2 669


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
130 135 0.035458 GGAATGGCCATCTCGTAGGG 59.965 60.000 21.08 0.0 36.34 3.53 F
261 270 0.263765 TTACCTACCCCGAGGAGCAT 59.736 55.000 0.00 0.0 39.15 3.79 F
649 700 0.391793 CTTCTTCTGTTCGGGAGGGC 60.392 60.000 0.00 0.0 0.00 5.19 F
1069 1130 0.859232 TCTTGCGTTGCGTCTTCTTC 59.141 50.000 0.00 0.0 0.00 2.87 F
1235 1645 1.298157 CCATCCACGCGCTCAAGAAA 61.298 55.000 5.73 0.0 0.00 2.52 F
1494 1907 1.339247 TGAAACCCGCCGTATGAATGT 60.339 47.619 0.00 0.0 0.00 2.71 F
3341 3762 1.544691 GAAACTGGTAGGAGACAGCGA 59.455 52.381 0.00 0.0 38.25 4.93 F
4237 4788 1.069090 GCGGGATGAGGCATCGTAA 59.931 57.895 0.00 0.0 41.35 3.18 F
4735 5293 0.755327 GGGAACTGTTGCCCTGTGTT 60.755 55.000 19.19 0.0 41.31 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1364 1774 0.386476 TGTGGTAGTCGTCGTGCTTT 59.614 50.000 0.00 0.00 0.00 3.51 R
1911 2324 0.843309 TGGTGGTGGAGTCAATGTGT 59.157 50.000 0.00 0.00 0.00 3.72 R
2519 2936 1.004440 GCAGAGAACAGGCCGAAGT 60.004 57.895 0.00 0.00 0.00 3.01 R
2931 3348 0.378610 GTTAGAAGCAGCAATCGGCC 59.621 55.000 0.00 0.00 46.50 6.13 R
2934 3351 2.668457 ACGAAGTTAGAAGCAGCAATCG 59.332 45.455 0.00 0.00 37.78 3.34 R
3390 3811 1.380380 GAGGGCTTCCATTGGTGGG 60.380 63.158 1.86 0.00 46.06 4.61 R
4716 5274 0.755327 AACACAGGGCAACAGTTCCC 60.755 55.000 11.15 11.15 42.94 3.97 R
5538 6104 0.240945 CCGCCAACGAATTCTGCTTT 59.759 50.000 3.52 0.00 43.93 3.51 R
6431 7037 0.109597 GTCATTTGGAGCCGCAAGTG 60.110 55.000 0.00 0.00 0.00 3.16 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 135 0.035458 GGAATGGCCATCTCGTAGGG 59.965 60.000 21.08 0.00 36.34 3.53
166 175 2.395619 CATCCCCCGGAGTATATACCC 58.604 57.143 0.73 9.30 34.05 3.69
189 198 0.823356 TCCACCGTATACCCTACGCC 60.823 60.000 0.00 0.00 39.38 5.68
197 206 3.670055 CGTATACCCTACGCCAAAATACG 59.330 47.826 0.00 0.00 36.07 3.06
261 270 0.263765 TTACCTACCCCGAGGAGCAT 59.736 55.000 0.00 0.00 39.15 3.79
280 298 2.888464 TACCGAGCCGAGAGAGGTGG 62.888 65.000 0.00 0.00 36.49 4.61
293 311 1.284785 AGAGGTGGGAGAGAGACAGAG 59.715 57.143 0.00 0.00 0.00 3.35
410 442 4.311606 TGCATCGCCGTAAATGTATGTAT 58.688 39.130 0.00 0.00 0.00 2.29
417 449 4.828829 CCGTAAATGTATGTATCTCCCCC 58.171 47.826 0.00 0.00 0.00 5.40
532 574 4.475135 GCGAGGGGAGAAGGTGGC 62.475 72.222 0.00 0.00 0.00 5.01
649 700 0.391793 CTTCTTCTGTTCGGGAGGGC 60.392 60.000 0.00 0.00 0.00 5.19
710 761 1.657181 CGGAATTTATTGCGGCGCC 60.657 57.895 30.82 19.07 45.88 6.53
711 762 1.299850 GGAATTTATTGCGGCGCCC 60.300 57.895 30.82 16.65 0.00 6.13
779 838 3.607078 GCGAACTGCAAATCGTTTCTCTT 60.607 43.478 18.55 0.00 45.45 2.85
902 961 3.392616 AGTCCTCCTTTTCTGCTTCTTGA 59.607 43.478 0.00 0.00 0.00 3.02
995 1056 4.584743 GTCCAAGAAGTTGAATTTGGAGGT 59.415 41.667 5.13 0.00 46.98 3.85
1022 1083 1.201880 GTCGGGTAAGAACGAGCTCTT 59.798 52.381 12.85 0.00 40.09 2.85
1058 1119 2.308039 GCGTCGTCCTTCTTGCGTT 61.308 57.895 0.00 0.00 0.00 4.84
1059 1120 1.487231 CGTCGTCCTTCTTGCGTTG 59.513 57.895 0.00 0.00 0.00 4.10
1060 1121 1.204312 GTCGTCCTTCTTGCGTTGC 59.796 57.895 0.00 0.00 0.00 4.17
1061 1122 2.170985 CGTCCTTCTTGCGTTGCG 59.829 61.111 0.00 0.00 0.00 4.85
1062 1123 2.594962 CGTCCTTCTTGCGTTGCGT 61.595 57.895 0.00 0.00 0.00 5.24
1063 1124 1.204312 GTCCTTCTTGCGTTGCGTC 59.796 57.895 0.00 0.00 0.00 5.19
1069 1130 0.859232 TCTTGCGTTGCGTCTTCTTC 59.141 50.000 0.00 0.00 0.00 2.87
1107 1515 4.863925 GTGAGGCGCCGCTCTCTC 62.864 72.222 30.49 17.47 30.89 3.20
1109 1517 4.264638 GAGGCGCCGCTCTCTCTC 62.265 72.222 24.06 7.69 0.00 3.20
1110 1518 4.813235 AGGCGCCGCTCTCTCTCT 62.813 66.667 23.20 0.00 0.00 3.10
1111 1519 4.264638 GGCGCCGCTCTCTCTCTC 62.265 72.222 12.58 0.00 0.00 3.20
1235 1645 1.298157 CCATCCACGCGCTCAAGAAA 61.298 55.000 5.73 0.00 0.00 2.52
1442 1855 2.834549 TCCTTTTGTTTTTGCCCTGTGA 59.165 40.909 0.00 0.00 0.00 3.58
1480 1893 3.091545 TGAAATGCCAGGATCTGAAACC 58.908 45.455 0.00 0.00 32.44 3.27
1494 1907 1.339247 TGAAACCCGCCGTATGAATGT 60.339 47.619 0.00 0.00 0.00 2.71
1704 2117 5.832595 TGGTCAGGATTTTGAGTTTGATGAA 59.167 36.000 0.00 0.00 0.00 2.57
1723 2136 1.748122 CTGGATGAGGTGCTGTGCC 60.748 63.158 0.00 0.00 0.00 5.01
1731 2144 2.429930 GTGCTGTGCCACTACCCA 59.570 61.111 0.00 0.00 33.02 4.51
1755 2168 2.067091 GATACCATGGCGTCGACCGA 62.067 60.000 13.04 0.36 39.56 4.69
1989 2402 3.865745 CCTTCTTGGTCTACGCTTGTATG 59.134 47.826 0.00 0.00 0.00 2.39
2037 2450 7.697352 TGTTGAATGTGTTTTCATCAATGTC 57.303 32.000 0.00 0.00 35.64 3.06
2317 2730 6.182627 ACTTCATCCAAGATTCATGTAAGCA 58.817 36.000 0.00 0.00 35.82 3.91
2460 2877 4.655963 AGGTCAGTGTAAATTCATGCTGT 58.344 39.130 0.00 0.00 0.00 4.40
2711 3128 7.665559 TGGCACTCTAATTATGTGAAAGTCTTT 59.334 33.333 17.57 0.00 33.95 2.52
2934 3351 5.065914 TCACATTCAAGCTATAATCTGGCC 58.934 41.667 0.00 0.00 30.08 5.36
3124 3545 4.687018 TGCTTTATTCTTGCTTCGTACGAA 59.313 37.500 27.57 27.57 0.00 3.85
3126 3547 5.896974 GCTTTATTCTTGCTTCGTACGAATC 59.103 40.000 29.25 25.21 33.28 2.52
3163 3584 9.189156 TGTTCTATTTGGCTTTCTATAGCATTT 57.811 29.630 0.00 0.00 43.02 2.32
3225 3646 7.305474 GTTTATGTGAAACCTTCTACATGTGG 58.695 38.462 9.11 5.55 35.04 4.17
3337 3758 4.281182 GTCTCTTGAAACTGGTAGGAGACA 59.719 45.833 13.15 0.00 44.09 3.41
3341 3762 1.544691 GAAACTGGTAGGAGACAGCGA 59.455 52.381 0.00 0.00 38.25 4.93
3355 3776 3.057456 AGACAGCGACGAACTACTGAAAT 60.057 43.478 0.00 0.00 34.25 2.17
3427 3848 4.501571 CCCTCGTGATTTAGGTACCATCTG 60.502 50.000 15.94 6.03 0.00 2.90
3536 3957 6.751514 TGCTGTATAGTATTTGGTTGGTTG 57.248 37.500 0.00 0.00 0.00 3.77
3537 3958 5.124776 TGCTGTATAGTATTTGGTTGGTTGC 59.875 40.000 0.00 0.00 0.00 4.17
3561 3982 1.620413 GCCCAACGTTTACGAGTCGG 61.620 60.000 18.30 0.41 43.02 4.79
4237 4788 1.069090 GCGGGATGAGGCATCGTAA 59.931 57.895 0.00 0.00 41.35 3.18
4290 4845 2.093106 ACATGTCGACTAGTCTGGACC 58.907 52.381 20.34 7.19 0.00 4.46
4295 4850 1.350019 TCGACTAGTCTGGACCAGTCA 59.650 52.381 21.06 6.80 45.94 3.41
4303 4858 2.753452 GTCTGGACCAGTCATCGACTAA 59.247 50.000 21.06 0.00 41.37 2.24
4411 4966 2.813061 AGTCTAGACTAGTCGAGCGAC 58.187 52.381 24.04 21.51 40.43 5.19
4422 4977 2.813061 GTCGAGCGACTAGTCTAGACT 58.187 52.381 27.72 27.72 41.57 3.24
4423 4978 3.963665 GTCGAGCGACTAGTCTAGACTA 58.036 50.000 27.03 27.03 39.77 2.59
4424 4979 3.730715 GTCGAGCGACTAGTCTAGACTAC 59.269 52.174 25.58 16.93 39.77 2.73
4425 4980 3.631686 TCGAGCGACTAGTCTAGACTACT 59.368 47.826 25.58 20.69 42.54 2.57
4426 4981 3.976942 CGAGCGACTAGTCTAGACTACTC 59.023 52.174 25.58 25.18 42.54 2.59
4427 4982 3.968649 AGCGACTAGTCTAGACTACTCG 58.031 50.000 34.30 34.30 44.97 4.18
4568 5125 6.387041 CATGAACAATGCATCCATAGAACT 57.613 37.500 0.00 0.00 0.00 3.01
4573 5130 7.879677 TGAACAATGCATCCATAGAACTATAGG 59.120 37.037 0.00 0.00 0.00 2.57
4574 5131 6.176183 ACAATGCATCCATAGAACTATAGGC 58.824 40.000 0.00 0.00 0.00 3.93
4652 5209 2.705658 AGATGGAAGATTGGACGGCATA 59.294 45.455 0.00 0.00 0.00 3.14
4667 5224 4.519213 ACGGCATAGGCATAAAACACTTA 58.481 39.130 0.15 0.00 43.71 2.24
4716 5274 2.439507 AGGTCATTGGTATACCTGCCAG 59.560 50.000 22.41 8.43 42.08 4.85
4722 5280 1.274184 TGGTATACCTGCCAGGGAACT 60.274 52.381 22.41 0.00 40.58 3.01
4735 5293 0.755327 GGGAACTGTTGCCCTGTGTT 60.755 55.000 19.19 0.00 41.31 3.32
4745 5303 2.546899 TGCCCTGTGTTATGTACTCCT 58.453 47.619 0.00 0.00 0.00 3.69
4868 5426 4.455606 ACTGCTTTATCTATCCTTGGTGC 58.544 43.478 0.00 0.00 0.00 5.01
4908 5466 1.955778 TGATCCAGTTGGCAAGTGTTG 59.044 47.619 28.11 16.89 34.44 3.33
4919 5477 3.245016 TGGCAAGTGTTGATCTTCCTCAT 60.245 43.478 0.00 0.00 0.00 2.90
4920 5478 3.760684 GGCAAGTGTTGATCTTCCTCATT 59.239 43.478 0.00 0.00 0.00 2.57
4921 5479 4.380233 GGCAAGTGTTGATCTTCCTCATTG 60.380 45.833 0.00 0.00 0.00 2.82
5029 5587 6.116806 TCTTGTTAAAGTTGTGACAGCCTTA 58.883 36.000 0.00 0.00 34.78 2.69
5047 5605 6.545298 CAGCCTTAATCAAGCTATTCTCCTTT 59.455 38.462 0.00 0.00 0.00 3.11
5078 5636 4.909696 TTCATCTCTAGTAGAGCACTGC 57.090 45.455 20.60 0.00 42.04 4.40
5101 5659 2.548295 GCTTGAAAACGCCGGTCCA 61.548 57.895 1.90 0.00 0.00 4.02
5197 5755 3.829948 ACAGCGCATTGAAAATCTTGAG 58.170 40.909 11.47 0.00 0.00 3.02
5239 5797 1.302285 CAAGCCACCAGAGATGCCT 59.698 57.895 0.00 0.00 0.00 4.75
5328 5886 7.883833 GGAGAGGACCAAAAGAGTAAGTTTTAT 59.116 37.037 0.00 0.00 0.00 1.40
5329 5887 8.622948 AGAGGACCAAAAGAGTAAGTTTTATG 57.377 34.615 0.00 0.00 0.00 1.90
5380 5943 3.324993 CTCTTGAGAGTTCTGAGTTGGC 58.675 50.000 0.00 0.00 37.40 4.52
5393 5956 2.229792 GAGTTGGCCATGTGTCTCAAA 58.770 47.619 6.09 0.00 0.00 2.69
5404 5967 5.105877 CCATGTGTCTCAAAGCATCTTCATT 60.106 40.000 0.00 0.00 0.00 2.57
5405 5968 5.366829 TGTGTCTCAAAGCATCTTCATTG 57.633 39.130 0.00 0.00 0.00 2.82
5410 5973 4.112634 CTCAAAGCATCTTCATTGCATGG 58.887 43.478 0.00 0.00 42.62 3.66
5411 5974 3.764972 TCAAAGCATCTTCATTGCATGGA 59.235 39.130 0.00 0.00 42.62 3.41
5412 5975 4.404394 TCAAAGCATCTTCATTGCATGGAT 59.596 37.500 0.00 0.00 42.62 3.41
5413 5976 4.322080 AAGCATCTTCATTGCATGGATG 57.678 40.909 0.00 0.00 42.62 3.51
5414 5977 3.296854 AGCATCTTCATTGCATGGATGT 58.703 40.909 0.00 0.00 42.62 3.06
5415 5978 3.068165 AGCATCTTCATTGCATGGATGTG 59.932 43.478 0.00 0.00 42.62 3.21
5416 5979 3.798889 GCATCTTCATTGCATGGATGTGG 60.799 47.826 0.00 2.97 39.90 4.17
5418 5981 2.756207 TCTTCATTGCATGGATGTGGTG 59.244 45.455 0.00 0.00 0.00 4.17
5419 5982 2.510928 TCATTGCATGGATGTGGTGA 57.489 45.000 0.00 0.00 0.00 4.02
5420 5983 2.805194 TCATTGCATGGATGTGGTGAA 58.195 42.857 0.00 0.00 0.00 3.18
5421 5984 2.756207 TCATTGCATGGATGTGGTGAAG 59.244 45.455 0.00 0.00 0.00 3.02
5422 5985 2.583024 TTGCATGGATGTGGTGAAGA 57.417 45.000 0.00 0.00 0.00 2.87
5423 5986 2.812836 TGCATGGATGTGGTGAAGAT 57.187 45.000 0.00 0.00 0.00 2.40
5427 5990 3.746751 GCATGGATGTGGTGAAGATAGCT 60.747 47.826 0.00 0.00 0.00 3.32
5428 5991 4.503817 GCATGGATGTGGTGAAGATAGCTA 60.504 45.833 0.00 0.00 0.00 3.32
5429 5992 4.944619 TGGATGTGGTGAAGATAGCTAG 57.055 45.455 0.00 0.00 0.00 3.42
5430 5993 4.290093 TGGATGTGGTGAAGATAGCTAGT 58.710 43.478 0.00 0.00 0.00 2.57
5431 5994 4.716784 TGGATGTGGTGAAGATAGCTAGTT 59.283 41.667 0.00 0.00 0.00 2.24
5432 5995 5.189736 TGGATGTGGTGAAGATAGCTAGTTT 59.810 40.000 0.00 0.00 0.00 2.66
5433 5996 6.116126 GGATGTGGTGAAGATAGCTAGTTTT 58.884 40.000 0.00 0.00 0.00 2.43
5434 5997 6.599638 GGATGTGGTGAAGATAGCTAGTTTTT 59.400 38.462 0.00 0.00 0.00 1.94
5435 5998 7.201652 GGATGTGGTGAAGATAGCTAGTTTTTC 60.202 40.741 0.00 1.47 0.00 2.29
5436 5999 6.769512 TGTGGTGAAGATAGCTAGTTTTTCT 58.230 36.000 0.00 0.00 0.00 2.52
5437 6000 6.874134 TGTGGTGAAGATAGCTAGTTTTTCTC 59.126 38.462 0.00 2.07 0.00 2.87
5438 6001 7.100409 GTGGTGAAGATAGCTAGTTTTTCTCT 58.900 38.462 0.00 0.00 0.00 3.10
5439 6002 7.604545 GTGGTGAAGATAGCTAGTTTTTCTCTT 59.395 37.037 0.00 1.24 0.00 2.85
5454 6017 9.741647 AGTTTTTCTCTTCTCAAAGCTATTTTG 57.258 29.630 0.00 0.00 46.09 2.44
5456 6019 8.463930 TTTTCTCTTCTCAAAGCTATTTTGGA 57.536 30.769 0.00 0.00 45.05 3.53
5457 6020 7.678947 TTCTCTTCTCAAAGCTATTTTGGAG 57.321 36.000 0.00 0.00 45.05 3.86
5458 6021 5.645497 TCTCTTCTCAAAGCTATTTTGGAGC 59.355 40.000 0.00 0.00 45.05 4.70
5459 6022 5.316167 TCTTCTCAAAGCTATTTTGGAGCA 58.684 37.500 0.00 0.00 45.05 4.26
5460 6023 5.769662 TCTTCTCAAAGCTATTTTGGAGCAA 59.230 36.000 0.00 0.00 45.05 3.91
5462 6025 6.199937 TCTCAAAGCTATTTTGGAGCAATC 57.800 37.500 0.00 0.00 45.05 2.67
5501 6066 1.655099 GCATTGTGGTTTATGCAAGCG 59.345 47.619 0.00 0.00 44.99 4.68
5550 6116 0.454957 CGGTGGCAAAGCAGAATTCG 60.455 55.000 0.00 0.00 0.00 3.34
5606 6172 1.513586 GAGTCAAGGTACGCCGTCG 60.514 63.158 0.00 0.00 40.50 5.12
5610 6176 1.800315 CAAGGTACGCCGTCGACAG 60.800 63.158 17.16 5.18 40.50 3.51
5617 6183 1.233285 ACGCCGTCGACAGTTAGACT 61.233 55.000 17.16 0.00 39.41 3.24
5619 6185 1.615502 GCCGTCGACAGTTAGACTTC 58.384 55.000 17.16 0.00 35.38 3.01
5620 6186 1.068748 GCCGTCGACAGTTAGACTTCA 60.069 52.381 17.16 0.00 35.38 3.02
5622 6188 2.582687 CGTCGACAGTTAGACTTCACC 58.417 52.381 17.16 0.00 35.38 4.02
5623 6189 2.582687 GTCGACAGTTAGACTTCACCG 58.417 52.381 11.55 0.00 34.74 4.94
5639 6205 1.591158 CACCGAACCGATTGTATTCCG 59.409 52.381 0.00 0.00 0.00 4.30
5648 6214 4.334481 ACCGATTGTATTCCGAAATGAACC 59.666 41.667 0.00 0.00 0.00 3.62
5649 6215 4.334203 CCGATTGTATTCCGAAATGAACCA 59.666 41.667 0.00 0.00 0.00 3.67
5651 6217 5.504010 CGATTGTATTCCGAAATGAACCAGG 60.504 44.000 0.00 0.00 0.00 4.45
5655 6221 0.404040 TCCGAAATGAACCAGGGCTT 59.596 50.000 0.00 0.00 0.00 4.35
5901 6476 3.697166 AGTTCATATTTTGAGCCCGGTT 58.303 40.909 0.00 0.00 36.29 4.44
5922 6505 2.689034 CCTCCCTCGCTCCCCTTT 60.689 66.667 0.00 0.00 0.00 3.11
5983 6566 7.778470 TTTTGTTGGCCAAAAGTGTATTAAG 57.222 32.000 22.47 0.00 45.68 1.85
5984 6567 6.472686 TTGTTGGCCAAAAGTGTATTAAGT 57.527 33.333 22.47 0.00 0.00 2.24
5985 6568 6.079424 TGTTGGCCAAAAGTGTATTAAGTC 57.921 37.500 22.47 2.62 0.00 3.01
5986 6569 5.830991 TGTTGGCCAAAAGTGTATTAAGTCT 59.169 36.000 22.47 0.00 0.00 3.24
5987 6570 5.957842 TGGCCAAAAGTGTATTAAGTCTG 57.042 39.130 0.61 0.00 0.00 3.51
6070 6665 1.627550 GACCCGAAAGAACAGCGAGC 61.628 60.000 0.00 0.00 0.00 5.03
6089 6684 1.014044 CGACAGGCTTTAGCGCTGAA 61.014 55.000 22.90 18.28 43.26 3.02
6211 6811 4.338118 GTCTCCAGAAATCTCGTGATCTCT 59.662 45.833 0.00 0.00 30.61 3.10
6224 6824 0.033228 GATCTCTCCCGACATGGCTG 59.967 60.000 0.00 0.00 35.87 4.85
6271 6871 3.432252 ACGAATCTTGCACGGTCTTTTAG 59.568 43.478 0.00 0.00 0.00 1.85
6288 6888 0.546747 TAGTACAGGGCAGTGGGCTT 60.547 55.000 0.00 0.00 44.01 4.35
6423 7029 2.695359 GTGGTCTTTGATGCGGTTAGA 58.305 47.619 0.00 0.00 0.00 2.10
6424 7030 2.673368 GTGGTCTTTGATGCGGTTAGAG 59.327 50.000 0.00 0.00 0.00 2.43
6425 7031 1.666189 GGTCTTTGATGCGGTTAGAGC 59.334 52.381 0.00 0.00 0.00 4.09
6439 7045 3.805267 GAGCATCTCCACTTGCGG 58.195 61.111 0.00 0.00 43.61 5.69
6440 7046 2.437359 AGCATCTCCACTTGCGGC 60.437 61.111 0.00 0.00 43.61 6.53
6441 7047 2.437359 GCATCTCCACTTGCGGCT 60.437 61.111 0.00 0.00 0.00 5.52
6442 7048 2.467826 GCATCTCCACTTGCGGCTC 61.468 63.158 0.00 0.00 0.00 4.70
6443 7049 1.817099 CATCTCCACTTGCGGCTCC 60.817 63.158 0.00 0.00 0.00 4.70
6444 7050 2.293318 ATCTCCACTTGCGGCTCCA 61.293 57.895 0.00 0.00 0.00 3.86
6445 7051 1.841302 ATCTCCACTTGCGGCTCCAA 61.841 55.000 0.00 0.00 0.00 3.53
6446 7052 1.600636 CTCCACTTGCGGCTCCAAA 60.601 57.895 0.00 0.00 0.00 3.28
6447 7053 0.962356 CTCCACTTGCGGCTCCAAAT 60.962 55.000 0.00 0.00 0.00 2.32
6448 7054 1.213537 CCACTTGCGGCTCCAAATG 59.786 57.895 0.00 0.00 0.00 2.32
6449 7055 1.243342 CCACTTGCGGCTCCAAATGA 61.243 55.000 0.00 0.00 0.00 2.57
6450 7056 0.109597 CACTTGCGGCTCCAAATGAC 60.110 55.000 0.00 0.00 0.00 3.06
6451 7057 0.250901 ACTTGCGGCTCCAAATGACT 60.251 50.000 0.00 0.00 0.00 3.41
6452 7058 0.449388 CTTGCGGCTCCAAATGACTC 59.551 55.000 0.00 0.00 0.00 3.36
6453 7059 0.960364 TTGCGGCTCCAAATGACTCC 60.960 55.000 0.00 0.00 0.00 3.85
6454 7060 1.078143 GCGGCTCCAAATGACTCCT 60.078 57.895 0.00 0.00 0.00 3.69
6455 7061 0.178068 GCGGCTCCAAATGACTCCTA 59.822 55.000 0.00 0.00 0.00 2.94
6456 7062 1.808133 GCGGCTCCAAATGACTCCTAG 60.808 57.143 0.00 0.00 0.00 3.02
6457 7063 1.202580 CGGCTCCAAATGACTCCTAGG 60.203 57.143 0.82 0.82 0.00 3.02
6458 7064 1.141858 GGCTCCAAATGACTCCTAGGG 59.858 57.143 9.46 2.03 0.00 3.53
6459 7065 1.475930 GCTCCAAATGACTCCTAGGGC 60.476 57.143 9.46 0.00 0.00 5.19
6460 7066 1.839994 CTCCAAATGACTCCTAGGGCA 59.160 52.381 9.46 5.65 0.00 5.36
6461 7067 1.839994 TCCAAATGACTCCTAGGGCAG 59.160 52.381 9.46 1.97 0.00 4.85
6462 7068 1.561542 CCAAATGACTCCTAGGGCAGT 59.438 52.381 9.46 5.81 0.00 4.40
6463 7069 2.025887 CCAAATGACTCCTAGGGCAGTT 60.026 50.000 9.46 7.89 0.00 3.16
6464 7070 3.562176 CCAAATGACTCCTAGGGCAGTTT 60.562 47.826 9.46 1.91 0.00 2.66
6465 7071 4.082125 CAAATGACTCCTAGGGCAGTTTT 58.918 43.478 9.46 2.03 0.00 2.43
6466 7072 4.388577 AATGACTCCTAGGGCAGTTTTT 57.611 40.909 9.46 1.62 0.00 1.94
6481 7087 3.219928 TTTTTGGCCGGCGCTGAA 61.220 55.556 22.54 10.13 34.44 3.02
6482 7088 2.786495 TTTTTGGCCGGCGCTGAAA 61.786 52.632 22.54 15.31 34.44 2.69
6483 7089 2.298158 TTTTTGGCCGGCGCTGAAAA 62.298 50.000 22.54 19.64 34.44 2.29
6484 7090 2.298158 TTTTGGCCGGCGCTGAAAAA 62.298 50.000 22.54 17.40 34.44 1.94
6499 7105 3.950869 AAAAACTCCCTAGTCGCCC 57.049 52.632 0.00 0.00 33.75 6.13
6500 7106 1.359168 AAAAACTCCCTAGTCGCCCT 58.641 50.000 0.00 0.00 33.75 5.19
6501 7107 0.903236 AAAACTCCCTAGTCGCCCTC 59.097 55.000 0.00 0.00 33.75 4.30
6502 7108 0.252103 AAACTCCCTAGTCGCCCTCA 60.252 55.000 0.00 0.00 33.75 3.86
6503 7109 0.971447 AACTCCCTAGTCGCCCTCAC 60.971 60.000 0.00 0.00 33.75 3.51
6504 7110 1.379977 CTCCCTAGTCGCCCTCACA 60.380 63.158 0.00 0.00 0.00 3.58
6505 7111 0.970937 CTCCCTAGTCGCCCTCACAA 60.971 60.000 0.00 0.00 0.00 3.33
6506 7112 0.970937 TCCCTAGTCGCCCTCACAAG 60.971 60.000 0.00 0.00 0.00 3.16
6507 7113 1.517832 CCTAGTCGCCCTCACAAGG 59.482 63.158 0.00 0.00 42.95 3.61
6513 7119 4.373116 GCCCTCACAAGGCGTCGA 62.373 66.667 0.00 0.00 41.41 4.20
6514 7120 2.342279 CCCTCACAAGGCGTCGAA 59.658 61.111 0.00 0.00 41.85 3.71
6515 7121 1.079127 CCCTCACAAGGCGTCGAAT 60.079 57.895 0.00 0.00 41.85 3.34
6516 7122 0.673644 CCCTCACAAGGCGTCGAATT 60.674 55.000 0.00 0.00 41.85 2.17
6517 7123 0.721718 CCTCACAAGGCGTCGAATTC 59.278 55.000 0.00 0.00 35.37 2.17
6518 7124 1.673033 CCTCACAAGGCGTCGAATTCT 60.673 52.381 3.52 0.00 35.37 2.40
6519 7125 1.391485 CTCACAAGGCGTCGAATTCTG 59.609 52.381 3.52 0.00 0.00 3.02
6520 7126 0.179215 CACAAGGCGTCGAATTCTGC 60.179 55.000 3.52 4.88 0.00 4.26
6523 7129 3.564027 GGCGTCGAATTCTGCCGG 61.564 66.667 14.80 0.00 37.81 6.13
6524 7130 2.813908 GCGTCGAATTCTGCCGGT 60.814 61.111 1.90 0.00 0.00 5.28
6525 7131 2.388232 GCGTCGAATTCTGCCGGTT 61.388 57.895 1.90 0.00 0.00 4.44
6526 7132 1.708027 CGTCGAATTCTGCCGGTTC 59.292 57.895 1.90 0.00 0.00 3.62
6527 7133 1.708027 GTCGAATTCTGCCGGTTCG 59.292 57.895 15.77 15.77 44.31 3.95
6537 7143 3.336566 CCGGTTCGGCTCGTTTTT 58.663 55.556 0.00 0.00 41.17 1.94
6551 7157 3.065567 TTTTTGGCCCGGCGATCC 61.066 61.111 9.30 9.66 0.00 3.36
6552 7158 3.577334 TTTTTGGCCCGGCGATCCT 62.577 57.895 9.30 0.00 0.00 3.24
6553 7159 2.199613 TTTTTGGCCCGGCGATCCTA 62.200 55.000 9.30 2.64 0.00 2.94
6554 7160 2.602746 TTTTGGCCCGGCGATCCTAG 62.603 60.000 9.30 0.00 0.00 3.02
6561 7167 2.029221 GGCGATCCTAGGCCGAAC 59.971 66.667 22.16 12.65 39.93 3.95
6562 7168 2.029221 GCGATCCTAGGCCGAACC 59.971 66.667 22.16 5.89 39.61 3.62
6563 7169 2.735237 CGATCCTAGGCCGAACCC 59.265 66.667 15.51 0.00 40.58 4.11
6564 7170 1.833049 CGATCCTAGGCCGAACCCT 60.833 63.158 15.51 0.00 40.58 4.34
6565 7171 0.538977 CGATCCTAGGCCGAACCCTA 60.539 60.000 15.51 0.00 40.58 3.53
6566 7172 1.891450 CGATCCTAGGCCGAACCCTAT 60.891 57.143 15.51 0.00 40.58 2.57
6567 7173 2.619849 CGATCCTAGGCCGAACCCTATA 60.620 54.545 15.51 0.00 40.58 1.31
6568 7174 2.599408 TCCTAGGCCGAACCCTATAG 57.401 55.000 2.96 0.00 40.58 1.31
6569 7175 1.076677 TCCTAGGCCGAACCCTATAGG 59.923 57.143 12.27 12.27 40.58 2.57
6592 7198 4.444024 GCATGCGCTGCGAACGAA 62.444 61.111 28.07 5.24 41.97 3.85
6593 7199 2.276244 CATGCGCTGCGAACGAAG 60.276 61.111 28.07 2.49 0.00 3.79
6594 7200 4.152625 ATGCGCTGCGAACGAAGC 62.153 61.111 28.07 16.12 43.23 3.86
6598 7204 4.491328 GCTGCGAACGAAGCGAGC 62.491 66.667 11.41 0.22 37.01 5.03
6599 7205 4.183526 CTGCGAACGAAGCGAGCG 62.184 66.667 0.00 0.00 37.44 5.03
6638 7244 3.443045 CCCATGTGCTGCCGGAAC 61.443 66.667 5.05 0.00 0.00 3.62
6651 7257 4.722008 GGAACGCCGCTTGTTTTT 57.278 50.000 0.00 0.00 0.00 1.94
6671 7277 4.698201 TTTTGGGGATGTTTCCTTTTCC 57.302 40.909 0.00 0.00 42.20 3.13
6672 7278 3.628832 TTGGGGATGTTTCCTTTTCCT 57.371 42.857 0.00 0.00 42.20 3.36
6673 7279 3.628832 TGGGGATGTTTCCTTTTCCTT 57.371 42.857 0.00 0.00 42.20 3.36
6674 7280 3.935172 TGGGGATGTTTCCTTTTCCTTT 58.065 40.909 0.00 0.00 42.20 3.11
6675 7281 4.302930 TGGGGATGTTTCCTTTTCCTTTT 58.697 39.130 0.00 0.00 42.20 2.27
6676 7282 4.724293 TGGGGATGTTTCCTTTTCCTTTTT 59.276 37.500 0.00 0.00 42.20 1.94
6677 7283 5.163248 TGGGGATGTTTCCTTTTCCTTTTTC 60.163 40.000 0.00 0.00 42.20 2.29
6678 7284 5.071788 GGGGATGTTTCCTTTTCCTTTTTCT 59.928 40.000 0.00 0.00 42.20 2.52
6679 7285 6.409234 GGGGATGTTTCCTTTTCCTTTTTCTT 60.409 38.462 0.00 0.00 42.20 2.52
6680 7286 7.054124 GGGATGTTTCCTTTTCCTTTTTCTTT 58.946 34.615 0.00 0.00 42.20 2.52
6681 7287 7.556275 GGGATGTTTCCTTTTCCTTTTTCTTTT 59.444 33.333 0.00 0.00 42.20 2.27
6682 7288 8.956426 GGATGTTTCCTTTTCCTTTTTCTTTTT 58.044 29.630 0.00 0.00 39.14 1.94
6683 7289 9.988350 GATGTTTCCTTTTCCTTTTTCTTTTTC 57.012 29.630 0.00 0.00 0.00 2.29
6684 7290 9.739276 ATGTTTCCTTTTCCTTTTTCTTTTTCT 57.261 25.926 0.00 0.00 0.00 2.52
6685 7291 9.567776 TGTTTCCTTTTCCTTTTTCTTTTTCTT 57.432 25.926 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 135 2.692273 GATGGGGGTACGGGAATGGC 62.692 65.000 0.00 0.00 0.00 4.40
166 175 2.030540 CGTAGGGTATACGGTGGATGTG 60.031 54.545 0.00 0.00 37.29 3.21
197 206 9.428097 CGGTAGTGGTATTACCCTTATTTATTC 57.572 37.037 10.37 0.00 37.50 1.75
261 270 1.451567 CACCTCTCTCGGCTCGGTA 60.452 63.158 0.00 0.00 0.00 4.02
280 298 0.969917 TGCTGCCTCTGTCTCTCTCC 60.970 60.000 0.00 0.00 0.00 3.71
293 311 4.792804 GGGTGGAGCTCTGCTGCC 62.793 72.222 14.64 8.59 46.33 4.85
417 449 2.356818 GATGAGGGACGGAAGGAGCG 62.357 65.000 0.00 0.00 0.00 5.03
532 574 8.150296 AGATAAACAAAGAAAATGGAACCCAAG 58.850 33.333 0.00 0.00 36.95 3.61
710 761 1.666888 CCACTAAAAGCAAGCAAGCGG 60.667 52.381 0.00 0.00 40.15 5.52
711 762 1.689959 CCACTAAAAGCAAGCAAGCG 58.310 50.000 0.00 0.00 40.15 4.68
712 763 1.422388 GCCACTAAAAGCAAGCAAGC 58.578 50.000 0.00 0.00 0.00 4.01
713 764 1.340889 TGGCCACTAAAAGCAAGCAAG 59.659 47.619 0.00 0.00 0.00 4.01
714 765 1.407936 TGGCCACTAAAAGCAAGCAA 58.592 45.000 0.00 0.00 0.00 3.91
715 766 1.407936 TTGGCCACTAAAAGCAAGCA 58.592 45.000 3.88 0.00 0.00 3.91
716 767 2.340337 CATTGGCCACTAAAAGCAAGC 58.660 47.619 3.88 0.00 0.00 4.01
717 768 2.288948 TGCATTGGCCACTAAAAGCAAG 60.289 45.455 3.88 0.00 40.13 4.01
887 946 5.970023 CAGTCAGTTTCAAGAAGCAGAAAAG 59.030 40.000 0.00 0.00 35.71 2.27
902 961 2.629617 CCAAAGGATTGCCAGTCAGTTT 59.370 45.455 0.00 0.00 35.10 2.66
960 1019 1.118965 TCTTGGACACCAGCTCGGAA 61.119 55.000 8.91 0.00 38.63 4.30
995 1056 3.991773 CTCGTTCTTACCCGACATTTTCA 59.008 43.478 0.00 0.00 0.00 2.69
1045 1106 1.204312 GACGCAACGCAAGAAGGAC 59.796 57.895 0.00 0.00 43.62 3.85
1058 1119 2.494059 CCCAAGAAAGAAGAAGACGCA 58.506 47.619 0.00 0.00 0.00 5.24
1059 1120 1.807142 CCCCAAGAAAGAAGAAGACGC 59.193 52.381 0.00 0.00 0.00 5.19
1060 1121 2.427506 CCCCCAAGAAAGAAGAAGACG 58.572 52.381 0.00 0.00 0.00 4.18
1104 1512 2.571202 TCACTGCAGAGAGAGAGAGAGA 59.429 50.000 23.35 0.00 0.00 3.10
1105 1513 2.989909 TCACTGCAGAGAGAGAGAGAG 58.010 52.381 23.35 0.00 0.00 3.20
1106 1514 3.544684 GATCACTGCAGAGAGAGAGAGA 58.455 50.000 23.35 4.12 0.00 3.10
1107 1515 2.620115 GGATCACTGCAGAGAGAGAGAG 59.380 54.545 23.35 0.00 0.00 3.20
1108 1516 2.025510 TGGATCACTGCAGAGAGAGAGA 60.026 50.000 23.35 6.56 0.00 3.10
1109 1517 2.377073 TGGATCACTGCAGAGAGAGAG 58.623 52.381 23.35 1.00 0.00 3.20
1110 1518 2.521547 TGGATCACTGCAGAGAGAGA 57.478 50.000 23.35 10.12 0.00 3.10
1111 1519 2.803852 GCATGGATCACTGCAGAGAGAG 60.804 54.545 23.35 8.49 38.28 3.20
1364 1774 0.386476 TGTGGTAGTCGTCGTGCTTT 59.614 50.000 0.00 0.00 0.00 3.51
1442 1855 5.163581 GCATTTCACAGAGCTATCCAAACAT 60.164 40.000 0.00 0.00 0.00 2.71
1480 1893 1.364721 TCACAACATTCATACGGCGG 58.635 50.000 13.24 0.00 0.00 6.13
1494 1907 2.886523 CCTTCAAGAACCTGCATCACAA 59.113 45.455 0.00 0.00 0.00 3.33
1704 2117 1.002868 GCACAGCACCTCATCCAGT 60.003 57.895 0.00 0.00 0.00 4.00
1723 2136 1.874129 TGGTATCCCTGTGGGTAGTG 58.126 55.000 2.25 0.00 44.74 2.74
1731 2144 1.830145 GACGCCATGGTATCCCTGT 59.170 57.895 14.67 0.86 0.00 4.00
1737 2150 2.071844 CTCGGTCGACGCCATGGTAT 62.072 60.000 14.67 0.83 43.86 2.73
1767 2180 3.949031 GAGCCTCTCGATGTACACC 57.051 57.895 0.00 0.00 0.00 4.16
1911 2324 0.843309 TGGTGGTGGAGTCAATGTGT 59.157 50.000 0.00 0.00 0.00 3.72
1989 2402 9.353999 ACAAAACTTTAACAAACAGATCAAGAC 57.646 29.630 0.00 0.00 0.00 3.01
2008 2421 8.545229 TTGATGAAAACACATTCAACAAAACT 57.455 26.923 9.38 0.00 44.15 2.66
2317 2730 7.392673 GCATGATCCTGACAAATAATCCATAGT 59.607 37.037 0.00 0.00 0.00 2.12
2519 2936 1.004440 GCAGAGAACAGGCCGAAGT 60.004 57.895 0.00 0.00 0.00 3.01
2782 3199 7.791029 TCCAGATTGTGTATCAGCTACAAATA 58.209 34.615 3.25 0.00 41.93 1.40
2931 3348 0.378610 GTTAGAAGCAGCAATCGGCC 59.621 55.000 0.00 0.00 46.50 6.13
2934 3351 2.668457 ACGAAGTTAGAAGCAGCAATCG 59.332 45.455 0.00 0.00 37.78 3.34
3124 3545 7.559170 AGCCAAATAGAACAAAGCTAATCAGAT 59.441 33.333 0.00 0.00 0.00 2.90
3126 3547 7.093322 AGCCAAATAGAACAAAGCTAATCAG 57.907 36.000 0.00 0.00 0.00 2.90
3337 3758 3.428870 CACAATTTCAGTAGTTCGTCGCT 59.571 43.478 0.00 0.00 0.00 4.93
3341 3762 3.472652 TGGCACAATTTCAGTAGTTCGT 58.527 40.909 0.00 0.00 31.92 3.85
3390 3811 1.380380 GAGGGCTTCCATTGGTGGG 60.380 63.158 1.86 0.00 46.06 4.61
3427 3848 9.489084 AGTTAAATAAGAAAAATGCAAGGGAAC 57.511 29.630 0.00 0.00 0.00 3.62
3519 3940 5.823045 GCTAGAGCAACCAACCAAATACTAT 59.177 40.000 0.00 0.00 41.59 2.12
3522 3943 3.128764 GGCTAGAGCAACCAACCAAATAC 59.871 47.826 3.54 0.00 44.36 1.89
3524 3945 2.171003 GGCTAGAGCAACCAACCAAAT 58.829 47.619 3.54 0.00 44.36 2.32
3525 3946 1.616159 GGCTAGAGCAACCAACCAAA 58.384 50.000 3.54 0.00 44.36 3.28
3526 3947 0.251165 GGGCTAGAGCAACCAACCAA 60.251 55.000 3.54 0.00 44.36 3.67
3528 3949 0.251165 TTGGGCTAGAGCAACCAACC 60.251 55.000 7.83 0.00 44.36 3.77
3530 3951 0.605319 CGTTGGGCTAGAGCAACCAA 60.605 55.000 7.83 7.83 44.36 3.67
3531 3952 1.003839 CGTTGGGCTAGAGCAACCA 60.004 57.895 3.54 0.00 44.36 3.67
3532 3953 0.605589 AACGTTGGGCTAGAGCAACC 60.606 55.000 0.00 0.00 44.36 3.77
3533 3954 1.235724 AAACGTTGGGCTAGAGCAAC 58.764 50.000 0.00 0.00 44.36 4.17
3534 3955 2.419667 GTAAACGTTGGGCTAGAGCAA 58.580 47.619 0.00 0.00 44.36 3.91
3535 3956 1.670674 CGTAAACGTTGGGCTAGAGCA 60.671 52.381 0.00 0.00 37.40 4.26
3536 3957 0.997196 CGTAAACGTTGGGCTAGAGC 59.003 55.000 0.00 0.00 35.91 4.09
3537 3958 2.094854 ACTCGTAAACGTTGGGCTAGAG 60.095 50.000 0.00 8.07 40.80 2.43
3727 4159 4.893424 GTGACTCCACTTTGCTTGTTTA 57.107 40.909 0.00 0.00 40.10 2.01
4410 4965 5.125417 AGTCGAACGAGTAGTCTAGACTAGT 59.875 44.000 31.60 31.60 46.96 2.57
4411 4966 5.581605 AGTCGAACGAGTAGTCTAGACTAG 58.418 45.833 29.00 20.56 43.84 2.57
4412 4967 5.574891 AGTCGAACGAGTAGTCTAGACTA 57.425 43.478 25.58 25.58 42.54 2.59
4413 4968 4.423732 GAGTCGAACGAGTAGTCTAGACT 58.576 47.826 27.72 27.72 45.02 3.24
4414 4969 3.240401 CGAGTCGAACGAGTAGTCTAGAC 59.760 52.174 15.41 15.41 33.58 2.59
4415 4970 3.119673 ACGAGTCGAACGAGTAGTCTAGA 60.120 47.826 21.50 0.00 29.56 2.43
4416 4971 3.178267 ACGAGTCGAACGAGTAGTCTAG 58.822 50.000 21.50 2.41 29.56 2.43
4417 4972 3.223423 ACGAGTCGAACGAGTAGTCTA 57.777 47.619 21.50 0.00 29.56 2.59
4418 4973 2.077413 ACGAGTCGAACGAGTAGTCT 57.923 50.000 21.50 0.00 29.56 3.24
4419 4974 3.980238 TTACGAGTCGAACGAGTAGTC 57.020 47.619 21.50 4.17 35.57 2.59
4420 4975 3.000277 CGATTACGAGTCGAACGAGTAGT 60.000 47.826 21.50 18.06 41.40 2.73
4421 4976 3.000277 ACGATTACGAGTCGAACGAGTAG 60.000 47.826 21.50 7.46 41.40 2.57
4422 4977 2.923655 ACGATTACGAGTCGAACGAGTA 59.076 45.455 21.50 0.00 41.40 2.59
4423 4978 1.728971 ACGATTACGAGTCGAACGAGT 59.271 47.619 21.50 10.42 41.40 4.18
4424 4979 2.432445 ACGATTACGAGTCGAACGAG 57.568 50.000 21.50 9.77 41.40 4.18
4425 4980 2.498905 CAACGATTACGAGTCGAACGA 58.501 47.619 21.50 1.91 41.40 3.85
4426 4981 1.008745 GCAACGATTACGAGTCGAACG 60.009 52.381 21.50 18.87 41.40 3.95
4427 4982 2.248487 AGCAACGATTACGAGTCGAAC 58.752 47.619 21.50 6.28 41.40 3.95
4568 5125 7.684187 GCAATGCCATTTTTACTTCTGCCTATA 60.684 37.037 0.00 0.00 0.00 1.31
4573 5130 3.995705 TGCAATGCCATTTTTACTTCTGC 59.004 39.130 1.53 0.00 0.00 4.26
4574 5131 6.539324 CATTGCAATGCCATTTTTACTTCTG 58.461 36.000 25.50 0.00 0.00 3.02
4646 5203 5.493133 TTAAGTGTTTTATGCCTATGCCG 57.507 39.130 0.00 0.00 36.33 5.69
4652 5209 8.088365 GGTCAGAATTTTAAGTGTTTTATGCCT 58.912 33.333 0.00 0.00 0.00 4.75
4667 5224 6.265422 ACTTCATTCTTTCCGGTCAGAATTTT 59.735 34.615 21.31 6.27 37.60 1.82
4716 5274 0.755327 AACACAGGGCAACAGTTCCC 60.755 55.000 11.15 11.15 42.94 3.97
4722 5280 3.558321 GGAGTACATAACACAGGGCAACA 60.558 47.826 0.00 0.00 39.74 3.33
4735 5293 6.728411 TGAAACAGTCCTCTAGGAGTACATA 58.272 40.000 6.04 0.00 45.75 2.29
4745 5303 8.598916 TGGTACATTAAATGAAACAGTCCTCTA 58.401 33.333 0.00 0.00 0.00 2.43
4908 5466 7.869429 ACAAAATCAACAACAATGAGGAAGATC 59.131 33.333 0.00 0.00 0.00 2.75
5029 5587 7.178097 AGCTTGAAAAAGGAGAATAGCTTGATT 59.822 33.333 0.00 0.00 34.29 2.57
5047 5605 7.547370 GCTCTACTAGAGATGAAAAGCTTGAAA 59.453 37.037 16.16 0.00 45.07 2.69
5096 5654 3.976701 CTGGCACCGTGGATGGACC 62.977 68.421 0.00 0.00 39.54 4.46
5098 5656 2.927856 ACTGGCACCGTGGATGGA 60.928 61.111 0.00 0.00 0.00 3.41
5101 5659 3.717294 GGGACTGGCACCGTGGAT 61.717 66.667 0.00 0.00 0.00 3.41
5150 5708 1.134461 AGCACTCATCTCATCAGCACC 60.134 52.381 0.00 0.00 0.00 5.01
5197 5755 1.335324 GCAAGATGGTTGCACACAGAC 60.335 52.381 4.87 0.00 44.34 3.51
5239 5797 1.131638 ACTGTTGCTCCTTGTCCTCA 58.868 50.000 0.00 0.00 0.00 3.86
5341 5899 9.212641 TCTCAAGAGTCTGTGATTCAATAAAAG 57.787 33.333 0.00 0.00 0.00 2.27
5373 5931 1.896220 TTGAGACACATGGCCAACTC 58.104 50.000 10.96 14.04 0.00 3.01
5380 5943 3.754850 TGAAGATGCTTTGAGACACATGG 59.245 43.478 0.00 0.00 0.00 3.66
5404 5967 2.812836 ATCTTCACCACATCCATGCA 57.187 45.000 0.00 0.00 0.00 3.96
5405 5968 2.551459 GCTATCTTCACCACATCCATGC 59.449 50.000 0.00 0.00 0.00 4.06
5410 5973 7.550906 AGAAAAACTAGCTATCTTCACCACATC 59.449 37.037 0.00 0.00 0.00 3.06
5411 5974 7.398024 AGAAAAACTAGCTATCTTCACCACAT 58.602 34.615 0.00 0.00 0.00 3.21
5412 5975 6.769512 AGAAAAACTAGCTATCTTCACCACA 58.230 36.000 0.00 0.00 0.00 4.17
5413 5976 7.100409 AGAGAAAAACTAGCTATCTTCACCAC 58.900 38.462 0.00 0.00 0.00 4.16
5414 5977 7.246171 AGAGAAAAACTAGCTATCTTCACCA 57.754 36.000 0.00 0.00 0.00 4.17
5415 5978 8.038351 AGAAGAGAAAAACTAGCTATCTTCACC 58.962 37.037 23.25 6.82 42.18 4.02
5416 5979 8.996024 AGAAGAGAAAAACTAGCTATCTTCAC 57.004 34.615 23.25 11.15 42.18 3.18
5418 5981 9.646427 TTGAGAAGAGAAAAACTAGCTATCTTC 57.354 33.333 17.52 17.52 40.79 2.87
5420 5983 9.651913 CTTTGAGAAGAGAAAAACTAGCTATCT 57.348 33.333 0.00 0.00 34.71 1.98
5421 5984 8.387354 GCTTTGAGAAGAGAAAAACTAGCTATC 58.613 37.037 0.00 0.00 34.71 2.08
5422 5985 8.100164 AGCTTTGAGAAGAGAAAAACTAGCTAT 58.900 33.333 0.00 0.00 34.71 2.97
5423 5986 7.445945 AGCTTTGAGAAGAGAAAAACTAGCTA 58.554 34.615 0.00 0.00 34.71 3.32
5428 5991 9.741647 CAAAATAGCTTTGAGAAGAGAAAAACT 57.258 29.630 0.00 0.00 46.35 2.66
5429 5992 8.972349 CCAAAATAGCTTTGAGAAGAGAAAAAC 58.028 33.333 0.00 0.00 46.35 2.43
5430 5993 8.912988 TCCAAAATAGCTTTGAGAAGAGAAAAA 58.087 29.630 0.00 0.00 46.35 1.94
5431 5994 8.463930 TCCAAAATAGCTTTGAGAAGAGAAAA 57.536 30.769 0.00 0.00 46.35 2.29
5432 5995 7.308830 GCTCCAAAATAGCTTTGAGAAGAGAAA 60.309 37.037 0.00 0.00 46.35 2.52
5433 5996 6.150140 GCTCCAAAATAGCTTTGAGAAGAGAA 59.850 38.462 0.00 0.00 46.35 2.87
5434 5997 5.645497 GCTCCAAAATAGCTTTGAGAAGAGA 59.355 40.000 0.00 0.00 46.35 3.10
5435 5998 5.413833 TGCTCCAAAATAGCTTTGAGAAGAG 59.586 40.000 0.00 0.00 46.35 2.85
5436 5999 5.316167 TGCTCCAAAATAGCTTTGAGAAGA 58.684 37.500 0.00 0.00 46.35 2.87
5437 6000 5.633830 TGCTCCAAAATAGCTTTGAGAAG 57.366 39.130 0.00 0.00 46.35 2.85
5438 6001 6.594788 ATTGCTCCAAAATAGCTTTGAGAA 57.405 33.333 0.00 0.00 46.35 2.87
5439 6002 5.163723 CGATTGCTCCAAAATAGCTTTGAGA 60.164 40.000 0.00 0.00 46.35 3.27
5457 6020 2.523015 CATCCACAAAGAAGCGATTGC 58.477 47.619 0.00 0.00 43.24 3.56
5458 6021 2.095110 TGCATCCACAAAGAAGCGATTG 60.095 45.455 0.00 0.00 33.23 2.67
5459 6022 2.161855 TGCATCCACAAAGAAGCGATT 58.838 42.857 0.00 0.00 33.23 3.34
5460 6023 1.825090 TGCATCCACAAAGAAGCGAT 58.175 45.000 0.00 0.00 33.23 4.58
5462 6025 1.904144 CATGCATCCACAAAGAAGCG 58.096 50.000 0.00 0.00 33.23 4.68
5497 6062 2.489329 CCTGATCAATTCACCAACGCTT 59.511 45.455 0.00 0.00 0.00 4.68
5499 6064 1.468054 GCCTGATCAATTCACCAACGC 60.468 52.381 0.00 0.00 0.00 4.84
5500 6065 1.811965 TGCCTGATCAATTCACCAACG 59.188 47.619 0.00 0.00 0.00 4.10
5501 6066 2.821969 AGTGCCTGATCAATTCACCAAC 59.178 45.455 14.38 0.00 0.00 3.77
5538 6104 0.240945 CCGCCAACGAATTCTGCTTT 59.759 50.000 3.52 0.00 43.93 3.51
5550 6116 0.390472 CTTCCAGAGTCTCCGCCAAC 60.390 60.000 0.00 0.00 0.00 3.77
5606 6172 3.315418 GGTTCGGTGAAGTCTAACTGTC 58.685 50.000 0.00 0.00 0.00 3.51
5610 6176 2.712057 TCGGTTCGGTGAAGTCTAAC 57.288 50.000 0.00 0.00 0.00 2.34
5617 6183 3.264104 GGAATACAATCGGTTCGGTGAA 58.736 45.455 0.00 0.00 0.00 3.18
5619 6185 1.591158 CGGAATACAATCGGTTCGGTG 59.409 52.381 0.00 0.00 0.00 4.94
5620 6186 1.477700 TCGGAATACAATCGGTTCGGT 59.522 47.619 0.00 0.00 0.00 4.69
5622 6188 4.269123 TCATTTCGGAATACAATCGGTTCG 59.731 41.667 0.00 0.00 0.00 3.95
5623 6189 5.728351 TCATTTCGGAATACAATCGGTTC 57.272 39.130 0.00 0.00 0.00 3.62
5684 6251 2.480416 GGTCGTCCTATGAGCAGAACAG 60.480 54.545 0.00 0.00 32.24 3.16
5922 6505 2.425592 CACTGCGTTCACCAGGGA 59.574 61.111 0.00 0.00 35.76 4.20
5970 6553 4.083484 GCCGCACAGACTTAATACACTTTT 60.083 41.667 0.00 0.00 0.00 2.27
5980 6563 2.047274 GGCAGCCGCACAGACTTA 60.047 61.111 0.00 0.00 41.24 2.24
5983 6566 2.980233 AAAGGCAGCCGCACAGAC 60.980 61.111 5.55 0.00 41.24 3.51
5984 6567 2.979676 CAAAGGCAGCCGCACAGA 60.980 61.111 5.55 0.00 41.24 3.41
5985 6568 4.712425 GCAAAGGCAGCCGCACAG 62.712 66.667 5.55 0.00 41.24 3.66
6019 6604 2.123726 GGATTGCATTCCCGCCCT 60.124 61.111 15.47 0.00 0.00 5.19
6031 6626 1.726791 CAGTCAAACCTCGACGGATTG 59.273 52.381 13.85 13.85 44.50 2.67
6070 6665 1.014044 TTCAGCGCTAAAGCCTGTCG 61.014 55.000 10.99 0.00 39.08 4.35
6082 6677 1.326852 CAGACATCATCAGTTCAGCGC 59.673 52.381 0.00 0.00 0.00 5.92
6089 6684 5.809001 ACCATTTACACAGACATCATCAGT 58.191 37.500 0.00 0.00 0.00 3.41
6211 6811 4.758251 CACGCAGCCATGTCGGGA 62.758 66.667 0.00 0.00 33.12 5.14
6224 6824 1.081242 CAACAGCATCAACCCACGC 60.081 57.895 0.00 0.00 0.00 5.34
6271 6871 1.675641 CAAGCCCACTGCCCTGTAC 60.676 63.158 0.00 0.00 42.71 2.90
6356 6961 4.347453 CAGCCGGCAACTTGGTGC 62.347 66.667 31.54 1.44 44.14 5.01
6396 7001 0.606401 CATCAAAGACCACGGCACCT 60.606 55.000 0.00 0.00 0.00 4.00
6423 7029 2.437359 GCCGCAAGTGGAGATGCT 60.437 61.111 3.37 0.00 40.39 3.79
6424 7030 2.437359 AGCCGCAAGTGGAGATGC 60.437 61.111 3.37 0.00 39.17 3.91
6425 7031 1.817099 GGAGCCGCAAGTGGAGATG 60.817 63.158 3.37 0.00 0.00 2.90
6426 7032 1.841302 TTGGAGCCGCAAGTGGAGAT 61.841 55.000 3.37 0.00 0.00 2.75
6427 7033 2.050836 TTTGGAGCCGCAAGTGGAGA 62.051 55.000 3.37 0.00 0.00 3.71
6428 7034 0.962356 ATTTGGAGCCGCAAGTGGAG 60.962 55.000 3.37 0.00 0.00 3.86
6429 7035 1.074775 ATTTGGAGCCGCAAGTGGA 59.925 52.632 3.37 0.00 0.00 4.02
6430 7036 1.213537 CATTTGGAGCCGCAAGTGG 59.786 57.895 0.00 0.00 0.00 4.00
6431 7037 0.109597 GTCATTTGGAGCCGCAAGTG 60.110 55.000 0.00 0.00 0.00 3.16
6432 7038 0.250901 AGTCATTTGGAGCCGCAAGT 60.251 50.000 0.00 0.00 0.00 3.16
6433 7039 0.449388 GAGTCATTTGGAGCCGCAAG 59.551 55.000 0.00 0.00 0.00 4.01
6434 7040 0.960364 GGAGTCATTTGGAGCCGCAA 60.960 55.000 0.00 0.00 0.00 4.85
6435 7041 1.377202 GGAGTCATTTGGAGCCGCA 60.377 57.895 0.00 0.00 0.00 5.69
6436 7042 0.178068 TAGGAGTCATTTGGAGCCGC 59.822 55.000 0.00 0.00 0.00 6.53
6437 7043 1.202580 CCTAGGAGTCATTTGGAGCCG 60.203 57.143 1.05 0.00 0.00 5.52
6438 7044 1.141858 CCCTAGGAGTCATTTGGAGCC 59.858 57.143 11.48 0.00 0.00 4.70
6439 7045 1.475930 GCCCTAGGAGTCATTTGGAGC 60.476 57.143 11.48 0.00 0.00 4.70
6440 7046 1.839994 TGCCCTAGGAGTCATTTGGAG 59.160 52.381 11.48 0.00 0.00 3.86
6441 7047 1.839994 CTGCCCTAGGAGTCATTTGGA 59.160 52.381 11.48 0.00 0.00 3.53
6442 7048 1.561542 ACTGCCCTAGGAGTCATTTGG 59.438 52.381 11.48 0.00 0.00 3.28
6443 7049 3.356529 AACTGCCCTAGGAGTCATTTG 57.643 47.619 11.48 0.00 0.00 2.32
6444 7050 4.388577 AAAACTGCCCTAGGAGTCATTT 57.611 40.909 11.48 2.60 0.00 2.32
6445 7051 4.388577 AAAAACTGCCCTAGGAGTCATT 57.611 40.909 11.48 3.34 0.00 2.57
6464 7070 2.298158 TTTTCAGCGCCGGCCAAAAA 62.298 50.000 23.46 18.14 41.24 1.94
6465 7071 2.298158 TTTTTCAGCGCCGGCCAAAA 62.298 50.000 23.46 17.21 41.24 2.44
6466 7072 2.786495 TTTTTCAGCGCCGGCCAAA 61.786 52.632 23.46 12.00 41.24 3.28
6467 7073 3.219928 TTTTTCAGCGCCGGCCAA 61.220 55.556 23.46 5.70 41.24 4.52
6481 7087 1.278413 GAGGGCGACTAGGGAGTTTTT 59.722 52.381 0.00 0.00 35.45 1.94
6482 7088 0.903236 GAGGGCGACTAGGGAGTTTT 59.097 55.000 0.00 0.00 35.45 2.43
6483 7089 0.252103 TGAGGGCGACTAGGGAGTTT 60.252 55.000 0.00 0.00 35.45 2.66
6484 7090 0.971447 GTGAGGGCGACTAGGGAGTT 60.971 60.000 0.00 0.00 35.45 3.01
6485 7091 1.380112 GTGAGGGCGACTAGGGAGT 60.380 63.158 0.00 0.00 39.20 3.85
6486 7092 0.970937 TTGTGAGGGCGACTAGGGAG 60.971 60.000 0.00 0.00 0.00 4.30
6487 7093 0.970937 CTTGTGAGGGCGACTAGGGA 60.971 60.000 0.00 0.00 0.00 4.20
6488 7094 1.517832 CTTGTGAGGGCGACTAGGG 59.482 63.158 0.00 0.00 0.00 3.53
6489 7095 1.517832 CCTTGTGAGGGCGACTAGG 59.482 63.158 0.00 0.00 39.55 3.02
6490 7096 1.153549 GCCTTGTGAGGGCGACTAG 60.154 63.158 0.00 0.00 43.75 2.57
6491 7097 2.978824 GCCTTGTGAGGGCGACTA 59.021 61.111 0.00 0.00 43.75 2.59
6496 7102 3.876589 TTCGACGCCTTGTGAGGGC 62.877 63.158 0.00 0.00 43.75 5.19
6497 7103 0.673644 AATTCGACGCCTTGTGAGGG 60.674 55.000 0.00 0.00 43.75 4.30
6498 7104 0.721718 GAATTCGACGCCTTGTGAGG 59.278 55.000 0.00 0.00 46.50 3.86
6499 7105 1.391485 CAGAATTCGACGCCTTGTGAG 59.609 52.381 0.00 0.00 0.00 3.51
6500 7106 1.428448 CAGAATTCGACGCCTTGTGA 58.572 50.000 0.00 0.00 0.00 3.58
6501 7107 0.179215 GCAGAATTCGACGCCTTGTG 60.179 55.000 0.00 0.00 0.00 3.33
6502 7108 1.298859 GGCAGAATTCGACGCCTTGT 61.299 55.000 22.08 0.00 41.50 3.16
6503 7109 1.425428 GGCAGAATTCGACGCCTTG 59.575 57.895 22.08 6.75 41.50 3.61
6504 7110 2.100631 CGGCAGAATTCGACGCCTT 61.101 57.895 24.70 0.00 42.59 4.35
6505 7111 2.509336 CGGCAGAATTCGACGCCT 60.509 61.111 24.70 0.00 42.59 5.52
6506 7112 3.564027 CCGGCAGAATTCGACGCC 61.564 66.667 20.40 20.40 41.30 5.68
6507 7113 2.292802 GAACCGGCAGAATTCGACGC 62.293 60.000 16.69 12.71 0.00 5.19
6508 7114 1.708027 GAACCGGCAGAATTCGACG 59.292 57.895 15.60 15.60 0.00 5.12
6509 7115 1.693083 CCGAACCGGCAGAATTCGAC 61.693 60.000 21.65 0.00 46.28 4.20
6510 7116 1.447140 CCGAACCGGCAGAATTCGA 60.447 57.895 21.65 0.00 46.28 3.71
6511 7117 3.089784 CCGAACCGGCAGAATTCG 58.910 61.111 15.14 15.14 41.17 3.34
6534 7140 2.199613 TAGGATCGCCGGGCCAAAAA 62.200 55.000 14.55 0.00 39.96 1.94
6535 7141 2.602746 CTAGGATCGCCGGGCCAAAA 62.603 60.000 14.55 0.00 39.96 2.44
6536 7142 3.084646 TAGGATCGCCGGGCCAAA 61.085 61.111 14.55 0.00 39.96 3.28
6537 7143 3.546543 CTAGGATCGCCGGGCCAA 61.547 66.667 14.55 1.76 39.96 4.52
6544 7150 2.029221 GTTCGGCCTAGGATCGCC 59.971 66.667 14.75 5.18 42.05 5.54
6545 7151 2.029221 GGTTCGGCCTAGGATCGC 59.971 66.667 14.75 3.71 0.00 4.58
6546 7152 0.538977 TAGGGTTCGGCCTAGGATCG 60.539 60.000 14.75 15.49 37.43 3.69
6547 7153 1.939980 ATAGGGTTCGGCCTAGGATC 58.060 55.000 14.75 2.38 37.43 3.36
6548 7154 2.292323 CCTATAGGGTTCGGCCTAGGAT 60.292 54.545 14.75 0.00 35.68 3.24
6549 7155 1.076677 CCTATAGGGTTCGGCCTAGGA 59.923 57.143 14.75 0.00 35.68 2.94
6550 7156 1.558233 CCTATAGGGTTCGGCCTAGG 58.442 60.000 11.33 3.67 37.43 3.02
6562 7168 0.458543 CGCATGCTACGCCCTATAGG 60.459 60.000 17.13 12.27 39.47 2.57
6563 7169 3.036026 CGCATGCTACGCCCTATAG 57.964 57.895 17.13 0.00 0.00 1.31
6576 7182 2.276244 CTTCGTTCGCAGCGCATG 60.276 61.111 10.87 4.82 0.00 4.06
6577 7183 4.152625 GCTTCGTTCGCAGCGCAT 62.153 61.111 10.87 0.00 0.00 4.73
6581 7187 4.491328 GCTCGCTTCGTTCGCAGC 62.491 66.667 6.76 6.76 0.00 5.25
6582 7188 4.183526 CGCTCGCTTCGTTCGCAG 62.184 66.667 0.00 0.00 0.00 5.18
6621 7227 3.443045 GTTCCGGCAGCACATGGG 61.443 66.667 0.00 0.00 0.00 4.00
6622 7228 3.803082 CGTTCCGGCAGCACATGG 61.803 66.667 0.00 0.00 0.00 3.66
6623 7229 4.465512 GCGTTCCGGCAGCACATG 62.466 66.667 0.00 0.00 0.00 3.21
6634 7240 4.722008 AAAAACAAGCGGCGTTCC 57.278 50.000 9.37 0.00 0.00 3.62
6649 7255 4.724293 AGGAAAAGGAAACATCCCCAAAAA 59.276 37.500 0.00 0.00 32.16 1.94
6650 7256 4.302930 AGGAAAAGGAAACATCCCCAAAA 58.697 39.130 0.00 0.00 32.16 2.44
6651 7257 3.935172 AGGAAAAGGAAACATCCCCAAA 58.065 40.909 0.00 0.00 32.16 3.28
6652 7258 3.628832 AGGAAAAGGAAACATCCCCAA 57.371 42.857 0.00 0.00 32.16 4.12
6653 7259 3.628832 AAGGAAAAGGAAACATCCCCA 57.371 42.857 0.00 0.00 32.16 4.96
6654 7260 4.974645 AAAAGGAAAAGGAAACATCCCC 57.025 40.909 0.00 0.00 32.16 4.81
6655 7261 6.174720 AGAAAAAGGAAAAGGAAACATCCC 57.825 37.500 0.00 0.00 32.16 3.85
6656 7262 8.506168 AAAAGAAAAAGGAAAAGGAAACATCC 57.494 30.769 0.00 0.00 0.00 3.51
6657 7263 9.988350 GAAAAAGAAAAAGGAAAAGGAAACATC 57.012 29.630 0.00 0.00 0.00 3.06
6658 7264 9.739276 AGAAAAAGAAAAAGGAAAAGGAAACAT 57.261 25.926 0.00 0.00 0.00 2.71
6659 7265 9.567776 AAGAAAAAGAAAAAGGAAAAGGAAACA 57.432 25.926 0.00 0.00 0.00 2.83



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.