Multiple sequence alignment - TraesCS7D01G237900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G237900 chr7D 100.000 2438 0 0 1 2438 203026900 203024463 0.000000e+00 4503
1 TraesCS7D01G237900 chr7D 96.129 310 11 1 2007 2315 444356921 444357230 2.800000e-139 505
2 TraesCS7D01G237900 chr5D 96.498 1942 54 2 24 1951 484147932 484145991 0.000000e+00 3197
3 TraesCS7D01G237900 chr5D 95.328 1006 36 6 955 1951 408758999 408760002 0.000000e+00 1587
4 TraesCS7D01G237900 chr4D 94.825 1971 67 8 1 1951 360457147 360459102 0.000000e+00 3042
5 TraesCS7D01G237900 chr2A 93.795 1966 103 6 1 1949 596371838 596373801 0.000000e+00 2937
6 TraesCS7D01G237900 chr2A 91.612 1967 135 13 4 1951 672641177 672639222 0.000000e+00 2691
7 TraesCS7D01G237900 chr2B 88.989 1989 185 21 1 1961 159215140 159213158 0.000000e+00 2429
8 TraesCS7D01G237900 chr2B 96.078 306 11 1 2011 2315 247928363 247928668 4.680000e-137 497
9 TraesCS7D01G237900 chr7B 89.244 1906 176 20 1 1886 45045434 45043538 0.000000e+00 2357
10 TraesCS7D01G237900 chr3D 96.371 1433 46 6 521 1949 608413010 608411580 0.000000e+00 2353
11 TraesCS7D01G237900 chr3D 95.238 315 13 2 2003 2315 20893218 20892904 4.680000e-137 497
12 TraesCS7D01G237900 chr4B 87.893 1908 200 20 18 1902 534709528 534711427 0.000000e+00 2215
13 TraesCS7D01G237900 chr4B 90.291 103 10 0 18 120 534697205 534697103 4.230000e-28 135
14 TraesCS7D01G237900 chr5A 83.709 1731 255 11 3 1717 592022898 592021179 0.000000e+00 1609
15 TraesCS7D01G237900 chr1D 92.604 1014 62 1 87 1087 494513520 494512507 0.000000e+00 1445
16 TraesCS7D01G237900 chr1D 96.091 307 11 1 2010 2315 205084202 205083896 1.300000e-137 499
17 TraesCS7D01G237900 chr1D 96.091 307 11 1 2010 2315 361354651 361354957 1.300000e-137 499
18 TraesCS7D01G237900 chr1D 94.937 316 15 1 2003 2317 481831046 481830731 6.060000e-136 494
19 TraesCS7D01G237900 chr7A 96.743 307 9 1 2010 2315 162930596 162930290 6.010000e-141 510
20 TraesCS7D01G237900 chr2D 96.440 309 10 1 2010 2317 76640743 76640435 2.160000e-140 508
21 TraesCS7D01G237900 chr6D 95.806 310 11 2 2011 2318 123976716 123976407 1.300000e-137 499


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G237900 chr7D 203024463 203026900 2437 True 4503 4503 100.000 1 2438 1 chr7D.!!$R1 2437
1 TraesCS7D01G237900 chr5D 484145991 484147932 1941 True 3197 3197 96.498 24 1951 1 chr5D.!!$R1 1927
2 TraesCS7D01G237900 chr5D 408758999 408760002 1003 False 1587 1587 95.328 955 1951 1 chr5D.!!$F1 996
3 TraesCS7D01G237900 chr4D 360457147 360459102 1955 False 3042 3042 94.825 1 1951 1 chr4D.!!$F1 1950
4 TraesCS7D01G237900 chr2A 596371838 596373801 1963 False 2937 2937 93.795 1 1949 1 chr2A.!!$F1 1948
5 TraesCS7D01G237900 chr2A 672639222 672641177 1955 True 2691 2691 91.612 4 1951 1 chr2A.!!$R1 1947
6 TraesCS7D01G237900 chr2B 159213158 159215140 1982 True 2429 2429 88.989 1 1961 1 chr2B.!!$R1 1960
7 TraesCS7D01G237900 chr7B 45043538 45045434 1896 True 2357 2357 89.244 1 1886 1 chr7B.!!$R1 1885
8 TraesCS7D01G237900 chr3D 608411580 608413010 1430 True 2353 2353 96.371 521 1949 1 chr3D.!!$R2 1428
9 TraesCS7D01G237900 chr4B 534709528 534711427 1899 False 2215 2215 87.893 18 1902 1 chr4B.!!$F1 1884
10 TraesCS7D01G237900 chr5A 592021179 592022898 1719 True 1609 1609 83.709 3 1717 1 chr5A.!!$R1 1714
11 TraesCS7D01G237900 chr1D 494512507 494513520 1013 True 1445 1445 92.604 87 1087 1 chr1D.!!$R3 1000

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
541 555 0.332972 ACAGGCCTCCTCCAATTTCC 59.667 55.0 0.0 0.0 0.0 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2031 2082 0.03213 GGCAGCGGAATCTGTCGATA 59.968 55.0 0.0 0.0 36.49 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
181 182 4.120755 GGCTGGAGGGGGAAGCTG 62.121 72.222 0.00 0.00 37.12 4.24
204 205 6.188407 TGTTGTCCTACTCTGCTAGACTAAT 58.812 40.000 0.00 0.00 0.00 1.73
292 293 3.570125 GGGCCCTAGATTTGATTAACAGC 59.430 47.826 17.04 0.00 0.00 4.40
498 512 8.989980 GTAGACAACAAGTATATTAGGAATGCC 58.010 37.037 0.00 0.00 0.00 4.40
519 533 7.026697 TGCCCCTAATATATTTGCATGTAGA 57.973 36.000 2.68 0.00 0.00 2.59
540 554 1.467920 CACAGGCCTCCTCCAATTTC 58.532 55.000 0.00 0.00 0.00 2.17
541 555 0.332972 ACAGGCCTCCTCCAATTTCC 59.667 55.000 0.00 0.00 0.00 3.13
1045 1060 2.387510 AGGGGGATAGATAGGAACCCTC 59.612 54.545 0.00 0.00 43.26 4.30
1236 1251 4.710423 TGCTTTTTGTGCTTGTGTCTTA 57.290 36.364 0.00 0.00 0.00 2.10
1377 1392 1.726791 GACTCGCTCGAGAAAATGCAA 59.273 47.619 23.95 0.00 44.53 4.08
1490 1505 1.541310 ATGCCTCGTCCGACTCCAAA 61.541 55.000 0.00 0.00 0.00 3.28
1554 1569 0.911769 TTCAAGGCCGAGTGATCCAT 59.088 50.000 7.53 0.00 0.00 3.41
1617 1632 3.320879 CTCGACTGGCCTGGCACAT 62.321 63.158 22.05 4.04 38.20 3.21
1671 1692 2.875094 ATGGAGCATATCAAGGAGGC 57.125 50.000 0.00 0.00 0.00 4.70
1710 1731 2.169978 CAGAAGACATGAGGATGCTGGA 59.830 50.000 0.00 0.00 32.14 3.86
1719 1740 1.071857 GAGGATGCTGGATGATGCAGA 59.928 52.381 18.49 3.50 42.74 4.26
1865 1910 2.254546 TCTGAACATGCGTTTGAGGT 57.745 45.000 0.00 0.00 34.75 3.85
1870 1915 0.726827 ACATGCGTTTGAGGTATGCG 59.273 50.000 0.00 0.00 30.88 4.73
1902 1947 4.142160 GGGACTGGCTTGGTTTCATTTATC 60.142 45.833 0.00 0.00 0.00 1.75
1940 1991 1.883021 CGACAAAACCCCCTGATGC 59.117 57.895 0.00 0.00 0.00 3.91
1968 2019 5.861222 AAAAAGGTGTTTTGAGTGCAAAG 57.139 34.783 0.00 0.00 44.18 2.77
1969 2020 4.535526 AAAGGTGTTTTGAGTGCAAAGT 57.464 36.364 0.00 0.00 44.18 2.66
1970 2021 5.652994 AAAGGTGTTTTGAGTGCAAAGTA 57.347 34.783 0.00 0.00 44.18 2.24
1971 2022 5.652994 AAGGTGTTTTGAGTGCAAAGTAA 57.347 34.783 0.00 0.00 44.18 2.24
1972 2023 5.248870 AGGTGTTTTGAGTGCAAAGTAAG 57.751 39.130 0.00 0.00 44.18 2.34
1973 2024 4.947388 AGGTGTTTTGAGTGCAAAGTAAGA 59.053 37.500 0.00 0.00 44.18 2.10
1974 2025 5.066505 AGGTGTTTTGAGTGCAAAGTAAGAG 59.933 40.000 0.00 0.00 44.18 2.85
1975 2026 4.735338 GTGTTTTGAGTGCAAAGTAAGAGC 59.265 41.667 0.00 0.00 44.18 4.09
1976 2027 4.397730 TGTTTTGAGTGCAAAGTAAGAGCA 59.602 37.500 0.00 0.00 44.18 4.26
1977 2028 5.067674 TGTTTTGAGTGCAAAGTAAGAGCAT 59.932 36.000 0.00 0.00 44.18 3.79
1978 2029 5.362556 TTTGAGTGCAAAGTAAGAGCATC 57.637 39.130 0.00 0.00 38.99 3.91
1979 2030 5.065914 TTTGAGTGCAAAGTAAGAGCATCT 58.934 37.500 0.00 0.00 43.05 2.90
1980 2031 6.230472 TTTGAGTGCAAAGTAAGAGCATCTA 58.770 36.000 0.00 0.00 41.37 1.98
1981 2032 6.147821 TTTGAGTGCAAAGTAAGAGCATCTAC 59.852 38.462 0.00 0.00 41.37 2.59
1982 2033 8.168984 TTTGAGTGCAAAGTAAGAGCATCTACA 61.169 37.037 0.00 0.00 41.37 2.74
1992 2043 2.408050 GAGCATCTACAGCCGTATTGG 58.592 52.381 0.00 0.00 42.50 3.16
1993 2044 2.035961 GAGCATCTACAGCCGTATTGGA 59.964 50.000 0.00 0.00 42.00 3.53
1994 2045 2.135933 GCATCTACAGCCGTATTGGAC 58.864 52.381 0.00 0.00 42.00 4.02
1995 2046 2.483013 GCATCTACAGCCGTATTGGACA 60.483 50.000 0.00 0.00 42.00 4.02
1996 2047 3.792401 CATCTACAGCCGTATTGGACAA 58.208 45.455 0.00 0.00 42.00 3.18
1997 2048 3.965379 TCTACAGCCGTATTGGACAAA 57.035 42.857 0.00 0.00 42.00 2.83
1998 2049 4.481368 TCTACAGCCGTATTGGACAAAT 57.519 40.909 0.00 0.00 42.00 2.32
1999 2050 4.439057 TCTACAGCCGTATTGGACAAATC 58.561 43.478 0.00 0.00 42.00 2.17
2000 2051 2.365582 ACAGCCGTATTGGACAAATCC 58.634 47.619 0.00 0.00 46.48 3.01
2008 2059 4.542075 GGACAAATCCGGCTCCTC 57.458 61.111 0.00 0.00 34.48 3.71
2009 2060 1.602237 GGACAAATCCGGCTCCTCA 59.398 57.895 0.00 0.00 34.48 3.86
2010 2061 0.462759 GGACAAATCCGGCTCCTCAG 60.463 60.000 0.00 0.00 34.48 3.35
2011 2062 0.462759 GACAAATCCGGCTCCTCAGG 60.463 60.000 0.00 0.00 0.00 3.86
2012 2063 1.821332 CAAATCCGGCTCCTCAGGC 60.821 63.158 0.00 0.00 41.98 4.85
2013 2064 3.049080 AAATCCGGCTCCTCAGGCC 62.049 63.158 0.00 0.00 42.44 5.19
2018 2069 3.334054 GGCTCCTCAGGCCCTGTT 61.334 66.667 11.27 0.00 43.49 3.16
2019 2070 2.759795 GCTCCTCAGGCCCTGTTT 59.240 61.111 11.27 0.00 32.61 2.83
2020 2071 1.676967 GCTCCTCAGGCCCTGTTTG 60.677 63.158 11.27 2.56 32.61 2.93
2021 2072 1.001641 CTCCTCAGGCCCTGTTTGG 60.002 63.158 11.27 11.66 32.61 3.28
2022 2073 1.774217 TCCTCAGGCCCTGTTTGGT 60.774 57.895 11.27 0.00 32.61 3.67
2023 2074 1.153756 CCTCAGGCCCTGTTTGGTT 59.846 57.895 11.27 0.00 32.61 3.67
2024 2075 0.895559 CCTCAGGCCCTGTTTGGTTC 60.896 60.000 11.27 0.00 32.61 3.62
2025 2076 0.178992 CTCAGGCCCTGTTTGGTTCA 60.179 55.000 11.27 0.00 32.61 3.18
2026 2077 0.178992 TCAGGCCCTGTTTGGTTCAG 60.179 55.000 11.27 0.00 32.61 3.02
2027 2078 1.531602 AGGCCCTGTTTGGTTCAGC 60.532 57.895 0.00 0.00 0.00 4.26
2028 2079 1.531602 GGCCCTGTTTGGTTCAGCT 60.532 57.895 0.00 0.00 0.00 4.24
2029 2080 1.115326 GGCCCTGTTTGGTTCAGCTT 61.115 55.000 0.00 0.00 0.00 3.74
2030 2081 0.752658 GCCCTGTTTGGTTCAGCTTT 59.247 50.000 0.00 0.00 0.00 3.51
2031 2082 1.138859 GCCCTGTTTGGTTCAGCTTTT 59.861 47.619 0.00 0.00 0.00 2.27
2032 2083 2.364002 GCCCTGTTTGGTTCAGCTTTTA 59.636 45.455 0.00 0.00 0.00 1.52
2033 2084 3.006859 GCCCTGTTTGGTTCAGCTTTTAT 59.993 43.478 0.00 0.00 0.00 1.40
2034 2085 4.809673 CCCTGTTTGGTTCAGCTTTTATC 58.190 43.478 0.00 0.00 0.00 1.75
2035 2086 4.475944 CCTGTTTGGTTCAGCTTTTATCG 58.524 43.478 0.00 0.00 0.00 2.92
2036 2087 4.215399 CCTGTTTGGTTCAGCTTTTATCGA 59.785 41.667 0.00 0.00 0.00 3.59
2037 2088 5.103290 TGTTTGGTTCAGCTTTTATCGAC 57.897 39.130 0.00 0.00 0.00 4.20
2038 2089 4.576873 TGTTTGGTTCAGCTTTTATCGACA 59.423 37.500 0.00 0.00 0.00 4.35
2039 2090 5.147162 GTTTGGTTCAGCTTTTATCGACAG 58.853 41.667 0.00 0.00 0.00 3.51
2040 2091 4.265904 TGGTTCAGCTTTTATCGACAGA 57.734 40.909 0.00 0.00 0.00 3.41
2041 2092 4.832248 TGGTTCAGCTTTTATCGACAGAT 58.168 39.130 0.00 0.00 40.76 2.90
2042 2093 5.245531 TGGTTCAGCTTTTATCGACAGATT 58.754 37.500 0.00 0.00 38.26 2.40
2043 2094 5.351465 TGGTTCAGCTTTTATCGACAGATTC 59.649 40.000 0.00 0.00 38.26 2.52
2044 2095 5.220681 GGTTCAGCTTTTATCGACAGATTCC 60.221 44.000 0.00 0.00 38.26 3.01
2045 2096 4.112634 TCAGCTTTTATCGACAGATTCCG 58.887 43.478 0.00 0.00 38.26 4.30
2046 2097 2.866762 AGCTTTTATCGACAGATTCCGC 59.133 45.455 0.00 0.00 38.26 5.54
2047 2098 2.866762 GCTTTTATCGACAGATTCCGCT 59.133 45.455 0.00 0.00 38.26 5.52
2048 2099 3.302740 GCTTTTATCGACAGATTCCGCTG 60.303 47.826 0.00 0.00 41.63 5.18
2049 2100 1.852942 TTATCGACAGATTCCGCTGC 58.147 50.000 0.00 0.00 39.51 5.25
2050 2101 0.032130 TATCGACAGATTCCGCTGCC 59.968 55.000 0.00 0.00 39.51 4.85
2051 2102 2.960957 ATCGACAGATTCCGCTGCCG 62.961 60.000 0.00 0.00 42.09 5.69
2052 2103 3.567797 GACAGATTCCGCTGCCGC 61.568 66.667 0.00 0.00 39.51 6.53
2070 2121 2.845019 CGCAGCAGAATCTGAACCA 58.155 52.632 15.38 0.00 36.19 3.67
2071 2122 1.159285 CGCAGCAGAATCTGAACCAA 58.841 50.000 15.38 0.00 36.19 3.67
2072 2123 1.536766 CGCAGCAGAATCTGAACCAAA 59.463 47.619 15.38 0.00 36.19 3.28
2073 2124 2.413765 CGCAGCAGAATCTGAACCAAAG 60.414 50.000 15.38 0.00 36.19 2.77
2074 2125 2.094854 GCAGCAGAATCTGAACCAAAGG 60.095 50.000 15.38 0.00 36.19 3.11
2075 2126 2.490903 CAGCAGAATCTGAACCAAAGGG 59.509 50.000 15.38 0.00 36.19 3.95
2076 2127 1.203287 GCAGAATCTGAACCAAAGGGC 59.797 52.381 15.38 0.00 33.00 5.19
2077 2128 1.470098 CAGAATCTGAACCAAAGGGCG 59.530 52.381 3.77 0.00 33.00 6.13
2078 2129 1.351017 AGAATCTGAACCAAAGGGCGA 59.649 47.619 0.00 0.00 37.90 5.54
2079 2130 2.159382 GAATCTGAACCAAAGGGCGAA 58.841 47.619 0.00 0.00 37.90 4.70
2080 2131 1.534729 ATCTGAACCAAAGGGCGAAC 58.465 50.000 0.00 0.00 37.90 3.95
2081 2132 0.536460 TCTGAACCAAAGGGCGAACC 60.536 55.000 0.00 0.00 37.90 3.62
2091 2142 3.502572 GGCGAACCCAGCAGAATC 58.497 61.111 0.00 0.00 36.08 2.52
2092 2143 2.115291 GGCGAACCCAGCAGAATCC 61.115 63.158 0.00 0.00 36.08 3.01
2093 2144 1.377202 GCGAACCCAGCAGAATCCA 60.377 57.895 0.00 0.00 34.19 3.41
2094 2145 0.960364 GCGAACCCAGCAGAATCCAA 60.960 55.000 0.00 0.00 34.19 3.53
2095 2146 1.755179 CGAACCCAGCAGAATCCAAT 58.245 50.000 0.00 0.00 0.00 3.16
2096 2147 2.094675 CGAACCCAGCAGAATCCAATT 58.905 47.619 0.00 0.00 0.00 2.32
2097 2148 2.493278 CGAACCCAGCAGAATCCAATTT 59.507 45.455 0.00 0.00 0.00 1.82
2098 2149 3.428045 CGAACCCAGCAGAATCCAATTTC 60.428 47.826 0.00 0.00 0.00 2.17
2099 2150 3.173953 ACCCAGCAGAATCCAATTTCA 57.826 42.857 0.00 0.00 0.00 2.69
2100 2151 3.094572 ACCCAGCAGAATCCAATTTCAG 58.905 45.455 0.00 0.00 0.00 3.02
2101 2152 3.245371 ACCCAGCAGAATCCAATTTCAGA 60.245 43.478 0.00 0.00 0.00 3.27
2102 2153 3.765511 CCCAGCAGAATCCAATTTCAGAA 59.234 43.478 0.00 0.00 0.00 3.02
2103 2154 4.221262 CCCAGCAGAATCCAATTTCAGAAA 59.779 41.667 0.00 0.00 0.00 2.52
2104 2155 5.105064 CCCAGCAGAATCCAATTTCAGAAAT 60.105 40.000 2.20 2.20 0.00 2.17
2105 2156 6.040878 CCAGCAGAATCCAATTTCAGAAATC 58.959 40.000 8.90 0.00 0.00 2.17
2106 2157 6.040878 CAGCAGAATCCAATTTCAGAAATCC 58.959 40.000 8.90 0.00 0.00 3.01
2107 2158 5.039333 GCAGAATCCAATTTCAGAAATCCG 58.961 41.667 8.90 3.93 0.00 4.18
2108 2159 5.039333 CAGAATCCAATTTCAGAAATCCGC 58.961 41.667 8.90 0.00 0.00 5.54
2109 2160 4.952335 AGAATCCAATTTCAGAAATCCGCT 59.048 37.500 8.90 0.00 0.00 5.52
2110 2161 4.644103 ATCCAATTTCAGAAATCCGCTG 57.356 40.909 8.90 3.90 34.71 5.18
2111 2162 2.164219 TCCAATTTCAGAAATCCGCTGC 59.836 45.455 8.90 0.00 33.45 5.25
2112 2163 2.533266 CAATTTCAGAAATCCGCTGCC 58.467 47.619 8.90 0.00 33.45 4.85
2113 2164 1.838112 ATTTCAGAAATCCGCTGCCA 58.162 45.000 2.20 0.00 33.45 4.92
2114 2165 1.614996 TTTCAGAAATCCGCTGCCAA 58.385 45.000 0.00 0.00 33.45 4.52
2115 2166 1.614996 TTCAGAAATCCGCTGCCAAA 58.385 45.000 0.00 0.00 33.45 3.28
2116 2167 1.614996 TCAGAAATCCGCTGCCAAAA 58.385 45.000 0.00 0.00 33.45 2.44
2117 2168 2.170166 TCAGAAATCCGCTGCCAAAAT 58.830 42.857 0.00 0.00 33.45 1.82
2118 2169 2.164219 TCAGAAATCCGCTGCCAAAATC 59.836 45.455 0.00 0.00 33.45 2.17
2119 2170 2.165030 CAGAAATCCGCTGCCAAAATCT 59.835 45.455 0.00 0.00 0.00 2.40
2120 2171 2.165030 AGAAATCCGCTGCCAAAATCTG 59.835 45.455 0.00 0.00 0.00 2.90
2121 2172 1.838112 AATCCGCTGCCAAAATCTGA 58.162 45.000 0.00 0.00 0.00 3.27
2122 2173 1.838112 ATCCGCTGCCAAAATCTGAA 58.162 45.000 0.00 0.00 0.00 3.02
2123 2174 0.881118 TCCGCTGCCAAAATCTGAAC 59.119 50.000 0.00 0.00 0.00 3.18
2124 2175 0.109132 CCGCTGCCAAAATCTGAACC 60.109 55.000 0.00 0.00 0.00 3.62
2125 2176 0.597568 CGCTGCCAAAATCTGAACCA 59.402 50.000 0.00 0.00 0.00 3.67
2126 2177 1.000385 CGCTGCCAAAATCTGAACCAA 60.000 47.619 0.00 0.00 0.00 3.67
2127 2178 2.545532 CGCTGCCAAAATCTGAACCAAA 60.546 45.455 0.00 0.00 0.00 3.28
2128 2179 3.465871 GCTGCCAAAATCTGAACCAAAA 58.534 40.909 0.00 0.00 0.00 2.44
2129 2180 3.495753 GCTGCCAAAATCTGAACCAAAAG 59.504 43.478 0.00 0.00 0.00 2.27
2130 2181 3.465871 TGCCAAAATCTGAACCAAAAGC 58.534 40.909 0.00 0.00 0.00 3.51
2131 2182 2.476241 GCCAAAATCTGAACCAAAAGCG 59.524 45.455 0.00 0.00 0.00 4.68
2132 2183 3.059166 CCAAAATCTGAACCAAAAGCGG 58.941 45.455 0.00 0.00 0.00 5.52
2133 2184 3.243704 CCAAAATCTGAACCAAAAGCGGA 60.244 43.478 0.00 0.00 0.00 5.54
2134 2185 4.367450 CAAAATCTGAACCAAAAGCGGAA 58.633 39.130 0.00 0.00 0.00 4.30
2135 2186 3.923017 AATCTGAACCAAAAGCGGAAG 57.077 42.857 0.00 0.00 0.00 3.46
2148 2199 4.021925 GGAAGCAGCCCAGGACGT 62.022 66.667 0.00 0.00 0.00 4.34
2149 2200 2.743928 GAAGCAGCCCAGGACGTG 60.744 66.667 0.00 0.00 0.00 4.49
2153 2204 2.281761 CAGCCCAGGACGTGCTTT 60.282 61.111 6.93 0.00 31.77 3.51
2154 2205 2.032681 AGCCCAGGACGTGCTTTC 59.967 61.111 6.93 0.00 29.17 2.62
2155 2206 3.056328 GCCCAGGACGTGCTTTCC 61.056 66.667 6.93 0.00 0.00 3.13
2156 2207 2.429930 CCCAGGACGTGCTTTCCA 59.570 61.111 6.93 0.00 35.33 3.53
2157 2208 1.228124 CCCAGGACGTGCTTTCCAA 60.228 57.895 6.93 0.00 35.33 3.53
2158 2209 0.821711 CCCAGGACGTGCTTTCCAAA 60.822 55.000 6.93 0.00 35.33 3.28
2159 2210 1.028905 CCAGGACGTGCTTTCCAAAA 58.971 50.000 6.93 0.00 35.33 2.44
2160 2211 1.613437 CCAGGACGTGCTTTCCAAAAT 59.387 47.619 6.93 0.00 35.33 1.82
2161 2212 2.351738 CCAGGACGTGCTTTCCAAAATC 60.352 50.000 6.93 0.00 35.33 2.17
2162 2213 2.554032 CAGGACGTGCTTTCCAAAATCT 59.446 45.455 6.93 0.00 35.33 2.40
2163 2214 2.554032 AGGACGTGCTTTCCAAAATCTG 59.446 45.455 2.68 0.00 35.33 2.90
2164 2215 2.552315 GGACGTGCTTTCCAAAATCTGA 59.448 45.455 0.00 0.00 32.82 3.27
2165 2216 3.191371 GGACGTGCTTTCCAAAATCTGAT 59.809 43.478 0.00 0.00 32.82 2.90
2166 2217 4.321230 GGACGTGCTTTCCAAAATCTGATT 60.321 41.667 0.00 0.00 32.82 2.57
2167 2218 4.798574 ACGTGCTTTCCAAAATCTGATTC 58.201 39.130 2.92 0.00 0.00 2.52
2168 2219 4.168760 CGTGCTTTCCAAAATCTGATTCC 58.831 43.478 2.92 0.00 0.00 3.01
2169 2220 4.168760 GTGCTTTCCAAAATCTGATTCCG 58.831 43.478 2.92 0.00 0.00 4.30
2170 2221 3.182182 GCTTTCCAAAATCTGATTCCGC 58.818 45.455 2.92 0.00 0.00 5.54
2171 2222 3.119352 GCTTTCCAAAATCTGATTCCGCT 60.119 43.478 2.92 0.00 0.00 5.52
2172 2223 4.418392 CTTTCCAAAATCTGATTCCGCTG 58.582 43.478 2.92 0.03 0.00 5.18
2173 2224 1.745087 TCCAAAATCTGATTCCGCTGC 59.255 47.619 2.92 0.00 0.00 5.25
2174 2225 1.532505 CCAAAATCTGATTCCGCTGCG 60.533 52.381 16.34 16.34 0.00 5.18
2184 2235 4.496927 CCGCTGCGGGCCAAAATC 62.497 66.667 32.37 0.00 44.15 2.17
2185 2236 3.443045 CGCTGCGGGCCAAAATCT 61.443 61.111 15.40 0.00 37.74 2.40
2186 2237 2.182537 GCTGCGGGCCAAAATCTG 59.817 61.111 4.39 0.00 34.27 2.90
2187 2238 2.342650 GCTGCGGGCCAAAATCTGA 61.343 57.895 4.39 0.00 34.27 3.27
2188 2239 1.876497 GCTGCGGGCCAAAATCTGAA 61.876 55.000 4.39 0.00 34.27 3.02
2189 2240 0.602562 CTGCGGGCCAAAATCTGAAA 59.397 50.000 4.39 0.00 0.00 2.69
2190 2241 1.000731 CTGCGGGCCAAAATCTGAAAA 59.999 47.619 4.39 0.00 0.00 2.29
2191 2242 1.270041 TGCGGGCCAAAATCTGAAAAC 60.270 47.619 4.39 0.00 0.00 2.43
2192 2243 1.696988 CGGGCCAAAATCTGAAAACG 58.303 50.000 4.39 0.00 0.00 3.60
2193 2244 1.428448 GGGCCAAAATCTGAAAACGC 58.572 50.000 4.39 0.00 0.00 4.84
2194 2245 1.000843 GGGCCAAAATCTGAAAACGCT 59.999 47.619 4.39 0.00 0.00 5.07
2195 2246 2.061028 GGCCAAAATCTGAAAACGCTG 58.939 47.619 0.00 0.00 0.00 5.18
2196 2247 2.545742 GGCCAAAATCTGAAAACGCTGT 60.546 45.455 0.00 0.00 0.00 4.40
2197 2248 3.305064 GGCCAAAATCTGAAAACGCTGTA 60.305 43.478 0.00 0.00 0.00 2.74
2198 2249 4.485163 GCCAAAATCTGAAAACGCTGTAT 58.515 39.130 0.00 0.00 0.00 2.29
2199 2250 4.558860 GCCAAAATCTGAAAACGCTGTATC 59.441 41.667 0.00 0.00 0.00 2.24
2200 2251 5.698832 CCAAAATCTGAAAACGCTGTATCA 58.301 37.500 0.00 0.00 0.00 2.15
2201 2252 5.796935 CCAAAATCTGAAAACGCTGTATCAG 59.203 40.000 13.31 13.31 40.46 2.90
2212 2263 1.825090 CTGTATCAGCTGGTTTGCCA 58.175 50.000 15.13 1.11 43.73 4.92
2213 2264 2.161855 CTGTATCAGCTGGTTTGCCAA 58.838 47.619 15.13 0.00 45.51 4.52
2214 2265 2.557924 CTGTATCAGCTGGTTTGCCAAA 59.442 45.455 15.13 0.00 45.51 3.28
2215 2266 3.164268 TGTATCAGCTGGTTTGCCAAAT 58.836 40.909 15.13 0.00 45.51 2.32
2216 2267 2.754946 ATCAGCTGGTTTGCCAAATG 57.245 45.000 15.13 0.00 45.51 2.32
2217 2268 1.702182 TCAGCTGGTTTGCCAAATGA 58.298 45.000 15.13 0.00 45.51 2.57
2218 2269 1.340889 TCAGCTGGTTTGCCAAATGAC 59.659 47.619 15.13 0.00 45.51 3.06
2219 2270 0.681175 AGCTGGTTTGCCAAATGACC 59.319 50.000 0.00 0.00 45.51 4.02
2220 2271 0.681175 GCTGGTTTGCCAAATGACCT 59.319 50.000 0.00 0.00 45.51 3.85
2221 2272 1.892474 GCTGGTTTGCCAAATGACCTA 59.108 47.619 0.00 0.00 45.51 3.08
2222 2273 2.352715 GCTGGTTTGCCAAATGACCTAC 60.353 50.000 0.00 0.00 45.51 3.18
2223 2274 2.890311 CTGGTTTGCCAAATGACCTACA 59.110 45.455 0.00 0.00 45.51 2.74
2224 2275 3.505386 TGGTTTGCCAAATGACCTACAT 58.495 40.909 0.00 0.00 42.83 2.29
2252 2303 8.579850 TTTTATATCAGATTTTCCACAGCTGT 57.420 30.769 15.25 15.25 0.00 4.40
2253 2304 8.579850 TTTATATCAGATTTTCCACAGCTGTT 57.420 30.769 18.94 0.15 0.00 3.16
2254 2305 8.579850 TTATATCAGATTTTCCACAGCTGTTT 57.420 30.769 18.94 0.00 0.00 2.83
2255 2306 4.836125 TCAGATTTTCCACAGCTGTTTC 57.164 40.909 18.94 7.51 0.00 2.78
2256 2307 4.464008 TCAGATTTTCCACAGCTGTTTCT 58.536 39.130 18.94 9.65 0.00 2.52
2257 2308 4.516698 TCAGATTTTCCACAGCTGTTTCTC 59.483 41.667 18.94 8.40 0.00 2.87
2258 2309 3.823304 AGATTTTCCACAGCTGTTTCTCC 59.177 43.478 18.94 3.55 0.00 3.71
2259 2310 2.727123 TTTCCACAGCTGTTTCTCCA 57.273 45.000 18.94 0.00 0.00 3.86
2260 2311 1.967319 TTCCACAGCTGTTTCTCCAC 58.033 50.000 18.94 0.00 0.00 4.02
2261 2312 0.836606 TCCACAGCTGTTTCTCCACA 59.163 50.000 18.94 0.00 0.00 4.17
2262 2313 1.202687 TCCACAGCTGTTTCTCCACAG 60.203 52.381 18.94 1.97 46.15 3.66
2270 2321 4.843220 CTGTTTCTCCACAGCAGATTTT 57.157 40.909 0.00 0.00 37.96 1.82
2271 2322 5.192327 CTGTTTCTCCACAGCAGATTTTT 57.808 39.130 0.00 0.00 37.96 1.94
2272 2323 5.186996 TGTTTCTCCACAGCAGATTTTTC 57.813 39.130 0.00 0.00 0.00 2.29
2273 2324 4.644234 TGTTTCTCCACAGCAGATTTTTCA 59.356 37.500 0.00 0.00 0.00 2.69
2274 2325 4.836125 TTCTCCACAGCAGATTTTTCAC 57.164 40.909 0.00 0.00 0.00 3.18
2275 2326 3.819368 TCTCCACAGCAGATTTTTCACA 58.181 40.909 0.00 0.00 0.00 3.58
2276 2327 3.817084 TCTCCACAGCAGATTTTTCACAG 59.183 43.478 0.00 0.00 0.00 3.66
2277 2328 2.294233 TCCACAGCAGATTTTTCACAGC 59.706 45.455 0.00 0.00 0.00 4.40
2278 2329 2.295349 CCACAGCAGATTTTTCACAGCT 59.705 45.455 0.00 0.00 0.00 4.24
2279 2330 3.503363 CCACAGCAGATTTTTCACAGCTA 59.497 43.478 0.00 0.00 0.00 3.32
2280 2331 4.470462 CACAGCAGATTTTTCACAGCTAC 58.530 43.478 0.00 0.00 0.00 3.58
2281 2332 4.214971 CACAGCAGATTTTTCACAGCTACT 59.785 41.667 0.00 0.00 0.00 2.57
2282 2333 4.823989 ACAGCAGATTTTTCACAGCTACTT 59.176 37.500 0.00 0.00 0.00 2.24
2283 2334 5.300286 ACAGCAGATTTTTCACAGCTACTTT 59.700 36.000 0.00 0.00 0.00 2.66
2284 2335 6.183360 ACAGCAGATTTTTCACAGCTACTTTT 60.183 34.615 0.00 0.00 0.00 2.27
2285 2336 7.013274 ACAGCAGATTTTTCACAGCTACTTTTA 59.987 33.333 0.00 0.00 0.00 1.52
2286 2337 7.536622 CAGCAGATTTTTCACAGCTACTTTTAG 59.463 37.037 0.00 0.00 0.00 1.85
2287 2338 7.445402 AGCAGATTTTTCACAGCTACTTTTAGA 59.555 33.333 0.00 0.00 0.00 2.10
2288 2339 8.076178 GCAGATTTTTCACAGCTACTTTTAGAA 58.924 33.333 0.00 0.00 0.00 2.10
2289 2340 9.950680 CAGATTTTTCACAGCTACTTTTAGAAA 57.049 29.630 0.00 0.00 0.00 2.52
2292 2343 9.914131 ATTTTTCACAGCTACTTTTAGAAATCC 57.086 29.630 0.00 0.00 0.00 3.01
2293 2344 8.458573 TTTTCACAGCTACTTTTAGAAATCCA 57.541 30.769 0.00 0.00 0.00 3.41
2294 2345 7.435068 TTCACAGCTACTTTTAGAAATCCAC 57.565 36.000 0.00 0.00 0.00 4.02
2295 2346 6.530120 TCACAGCTACTTTTAGAAATCCACA 58.470 36.000 0.00 0.00 0.00 4.17
2296 2347 6.650807 TCACAGCTACTTTTAGAAATCCACAG 59.349 38.462 0.00 0.00 0.00 3.66
2297 2348 5.412904 ACAGCTACTTTTAGAAATCCACAGC 59.587 40.000 0.00 0.00 0.00 4.40
2298 2349 4.944317 AGCTACTTTTAGAAATCCACAGCC 59.056 41.667 0.00 0.00 0.00 4.85
2299 2350 4.201822 GCTACTTTTAGAAATCCACAGCCG 60.202 45.833 0.00 0.00 0.00 5.52
2300 2351 4.015872 ACTTTTAGAAATCCACAGCCGA 57.984 40.909 0.00 0.00 0.00 5.54
2301 2352 4.394729 ACTTTTAGAAATCCACAGCCGAA 58.605 39.130 0.00 0.00 0.00 4.30
2302 2353 4.215613 ACTTTTAGAAATCCACAGCCGAAC 59.784 41.667 0.00 0.00 0.00 3.95
2303 2354 2.396590 TAGAAATCCACAGCCGAACC 57.603 50.000 0.00 0.00 0.00 3.62
2304 2355 0.400213 AGAAATCCACAGCCGAACCA 59.600 50.000 0.00 0.00 0.00 3.67
2305 2356 1.202879 AGAAATCCACAGCCGAACCAA 60.203 47.619 0.00 0.00 0.00 3.67
2306 2357 1.611491 GAAATCCACAGCCGAACCAAA 59.389 47.619 0.00 0.00 0.00 3.28
2307 2358 0.958822 AATCCACAGCCGAACCAAAC 59.041 50.000 0.00 0.00 0.00 2.93
2308 2359 0.179004 ATCCACAGCCGAACCAAACA 60.179 50.000 0.00 0.00 0.00 2.83
2309 2360 0.817634 TCCACAGCCGAACCAAACAG 60.818 55.000 0.00 0.00 0.00 3.16
2310 2361 1.654220 CACAGCCGAACCAAACAGG 59.346 57.895 0.00 0.00 45.67 4.00
2311 2362 1.528309 ACAGCCGAACCAAACAGGG 60.528 57.895 0.00 0.00 43.89 4.45
2312 2363 2.597510 AGCCGAACCAAACAGGGC 60.598 61.111 0.00 0.00 43.89 5.19
2313 2364 3.680786 GCCGAACCAAACAGGGCC 61.681 66.667 0.00 0.00 43.89 5.80
2314 2365 2.115266 CCGAACCAAACAGGGCCT 59.885 61.111 0.00 0.00 43.89 5.19
2315 2366 1.971695 CCGAACCAAACAGGGCCTC 60.972 63.158 0.95 0.00 43.89 4.70
2316 2367 1.228124 CGAACCAAACAGGGCCTCA 60.228 57.895 0.95 0.00 43.89 3.86
2317 2368 0.821711 CGAACCAAACAGGGCCTCAA 60.822 55.000 0.95 0.00 43.89 3.02
2318 2369 1.408969 GAACCAAACAGGGCCTCAAA 58.591 50.000 0.95 0.00 43.89 2.69
2319 2370 1.068588 GAACCAAACAGGGCCTCAAAC 59.931 52.381 0.95 0.00 43.89 2.93
2320 2371 0.032615 ACCAAACAGGGCCTCAAACA 60.033 50.000 0.95 0.00 43.89 2.83
2321 2372 0.389025 CCAAACAGGGCCTCAAACAC 59.611 55.000 0.95 0.00 0.00 3.32
2322 2373 1.110442 CAAACAGGGCCTCAAACACA 58.890 50.000 0.95 0.00 0.00 3.72
2323 2374 1.111277 AAACAGGGCCTCAAACACAC 58.889 50.000 0.95 0.00 0.00 3.82
2324 2375 1.101049 AACAGGGCCTCAAACACACG 61.101 55.000 0.95 0.00 0.00 4.49
2325 2376 2.594592 AGGGCCTCAAACACACGC 60.595 61.111 0.00 0.00 0.00 5.34
2326 2377 4.025401 GGGCCTCAAACACACGCG 62.025 66.667 3.53 3.53 0.00 6.01
2327 2378 4.025401 GGCCTCAAACACACGCGG 62.025 66.667 12.47 1.27 0.00 6.46
2328 2379 2.970324 GCCTCAAACACACGCGGA 60.970 61.111 12.47 0.00 0.00 5.54
2329 2380 2.935955 CCTCAAACACACGCGGAC 59.064 61.111 12.47 0.00 0.00 4.79
2331 2382 3.558282 CTCAAACACACGCGGACGC 62.558 63.158 12.47 6.63 45.53 5.19
2369 2420 4.124351 CTGACCGGACGCGCCTTA 62.124 66.667 9.46 0.00 0.00 2.69
2370 2421 3.426117 CTGACCGGACGCGCCTTAT 62.426 63.158 9.46 0.00 0.00 1.73
2371 2422 2.067091 CTGACCGGACGCGCCTTATA 62.067 60.000 9.46 0.00 0.00 0.98
2372 2423 1.288127 GACCGGACGCGCCTTATAT 59.712 57.895 9.46 0.00 0.00 0.86
2373 2424 0.319297 GACCGGACGCGCCTTATATT 60.319 55.000 9.46 0.00 0.00 1.28
2374 2425 0.105408 ACCGGACGCGCCTTATATTT 59.895 50.000 9.46 0.00 0.00 1.40
2375 2426 0.788391 CCGGACGCGCCTTATATTTC 59.212 55.000 5.73 0.00 0.00 2.17
2376 2427 0.433492 CGGACGCGCCTTATATTTCG 59.567 55.000 5.73 0.00 0.00 3.46
2377 2428 1.494824 GGACGCGCCTTATATTTCGT 58.505 50.000 5.73 0.00 0.00 3.85
2378 2429 1.454653 GGACGCGCCTTATATTTCGTC 59.545 52.381 5.73 0.00 43.61 4.20
2379 2430 2.391879 GACGCGCCTTATATTTCGTCT 58.608 47.619 5.73 0.00 41.84 4.18
2380 2431 2.793232 GACGCGCCTTATATTTCGTCTT 59.207 45.455 5.73 0.00 41.84 3.01
2381 2432 2.793232 ACGCGCCTTATATTTCGTCTTC 59.207 45.455 5.73 0.00 0.00 2.87
2382 2433 3.050619 CGCGCCTTATATTTCGTCTTCT 58.949 45.455 0.00 0.00 0.00 2.85
2383 2434 4.224433 CGCGCCTTATATTTCGTCTTCTA 58.776 43.478 0.00 0.00 0.00 2.10
2384 2435 4.088213 CGCGCCTTATATTTCGTCTTCTAC 59.912 45.833 0.00 0.00 0.00 2.59
2385 2436 4.980434 GCGCCTTATATTTCGTCTTCTACA 59.020 41.667 0.00 0.00 0.00 2.74
2386 2437 5.634020 GCGCCTTATATTTCGTCTTCTACAT 59.366 40.000 0.00 0.00 0.00 2.29
2387 2438 6.145696 GCGCCTTATATTTCGTCTTCTACATT 59.854 38.462 0.00 0.00 0.00 2.71
2388 2439 7.619571 GCGCCTTATATTTCGTCTTCTACATTC 60.620 40.741 0.00 0.00 0.00 2.67
2389 2440 7.409449 CGCCTTATATTTCGTCTTCTACATTCG 60.409 40.741 0.00 0.00 0.00 3.34
2390 2441 7.619571 GCCTTATATTTCGTCTTCTACATTCGC 60.620 40.741 0.00 0.00 0.00 4.70
2391 2442 5.807730 ATATTTCGTCTTCTACATTCGCG 57.192 39.130 0.00 0.00 0.00 5.87
2392 2443 2.624316 TTCGTCTTCTACATTCGCGT 57.376 45.000 5.77 0.00 0.00 6.01
2393 2444 2.624316 TCGTCTTCTACATTCGCGTT 57.376 45.000 5.77 0.00 0.00 4.84
2394 2445 2.512885 TCGTCTTCTACATTCGCGTTC 58.487 47.619 5.77 0.00 0.00 3.95
2395 2446 1.582502 CGTCTTCTACATTCGCGTTCC 59.417 52.381 5.77 0.00 0.00 3.62
2396 2447 2.731341 CGTCTTCTACATTCGCGTTCCT 60.731 50.000 5.77 0.00 0.00 3.36
2397 2448 2.853003 GTCTTCTACATTCGCGTTCCTC 59.147 50.000 5.77 0.00 0.00 3.71
2398 2449 2.490509 TCTTCTACATTCGCGTTCCTCA 59.509 45.455 5.77 0.00 0.00 3.86
2399 2450 3.130516 TCTTCTACATTCGCGTTCCTCAT 59.869 43.478 5.77 0.00 0.00 2.90
2400 2451 4.337274 TCTTCTACATTCGCGTTCCTCATA 59.663 41.667 5.77 0.00 0.00 2.15
2401 2452 4.848562 TCTACATTCGCGTTCCTCATAT 57.151 40.909 5.77 0.00 0.00 1.78
2402 2453 4.795268 TCTACATTCGCGTTCCTCATATC 58.205 43.478 5.77 0.00 0.00 1.63
2403 2454 2.755650 ACATTCGCGTTCCTCATATCC 58.244 47.619 5.77 0.00 0.00 2.59
2404 2455 2.102420 ACATTCGCGTTCCTCATATCCA 59.898 45.455 5.77 0.00 0.00 3.41
2405 2456 2.971660 TTCGCGTTCCTCATATCCAA 57.028 45.000 5.77 0.00 0.00 3.53
2406 2457 2.971660 TCGCGTTCCTCATATCCAAA 57.028 45.000 5.77 0.00 0.00 3.28
2407 2458 3.254470 TCGCGTTCCTCATATCCAAAA 57.746 42.857 5.77 0.00 0.00 2.44
2408 2459 3.804036 TCGCGTTCCTCATATCCAAAAT 58.196 40.909 5.77 0.00 0.00 1.82
2409 2460 3.807622 TCGCGTTCCTCATATCCAAAATC 59.192 43.478 5.77 0.00 0.00 2.17
2410 2461 3.809832 CGCGTTCCTCATATCCAAAATCT 59.190 43.478 0.00 0.00 0.00 2.40
2411 2462 4.084328 CGCGTTCCTCATATCCAAAATCTC 60.084 45.833 0.00 0.00 0.00 2.75
2412 2463 4.816385 GCGTTCCTCATATCCAAAATCTCA 59.184 41.667 0.00 0.00 0.00 3.27
2413 2464 5.296780 GCGTTCCTCATATCCAAAATCTCAA 59.703 40.000 0.00 0.00 0.00 3.02
2414 2465 6.183360 GCGTTCCTCATATCCAAAATCTCAAA 60.183 38.462 0.00 0.00 0.00 2.69
2415 2466 7.628366 GCGTTCCTCATATCCAAAATCTCAAAA 60.628 37.037 0.00 0.00 0.00 2.44
2416 2467 7.698130 CGTTCCTCATATCCAAAATCTCAAAAC 59.302 37.037 0.00 0.00 0.00 2.43
2417 2468 7.645058 TCCTCATATCCAAAATCTCAAAACC 57.355 36.000 0.00 0.00 0.00 3.27
2418 2469 7.181361 TCCTCATATCCAAAATCTCAAAACCA 58.819 34.615 0.00 0.00 0.00 3.67
2419 2470 7.840716 TCCTCATATCCAAAATCTCAAAACCAT 59.159 33.333 0.00 0.00 0.00 3.55
2420 2471 7.924412 CCTCATATCCAAAATCTCAAAACCATG 59.076 37.037 0.00 0.00 0.00 3.66
2421 2472 8.365060 TCATATCCAAAATCTCAAAACCATGT 57.635 30.769 0.00 0.00 0.00 3.21
2422 2473 9.473007 TCATATCCAAAATCTCAAAACCATGTA 57.527 29.630 0.00 0.00 0.00 2.29
2426 2477 9.657419 ATCCAAAATCTCAAAACCATGTAATTC 57.343 29.630 0.00 0.00 0.00 2.17
2427 2478 8.869109 TCCAAAATCTCAAAACCATGTAATTCT 58.131 29.630 0.00 0.00 0.00 2.40
2428 2479 9.492973 CCAAAATCTCAAAACCATGTAATTCTT 57.507 29.630 0.00 0.00 0.00 2.52
2430 2481 8.538409 AAATCTCAAAACCATGTAATTCTTGC 57.462 30.769 0.00 0.00 0.00 4.01
2431 2482 6.647334 TCTCAAAACCATGTAATTCTTGCA 57.353 33.333 0.00 0.00 0.00 4.08
2432 2483 7.048629 TCTCAAAACCATGTAATTCTTGCAA 57.951 32.000 0.00 0.00 0.00 4.08
2433 2484 6.922957 TCTCAAAACCATGTAATTCTTGCAAC 59.077 34.615 0.00 0.00 0.00 4.17
2434 2485 5.988561 TCAAAACCATGTAATTCTTGCAACC 59.011 36.000 0.00 0.00 0.00 3.77
2435 2486 4.535526 AACCATGTAATTCTTGCAACCC 57.464 40.909 0.00 0.00 0.00 4.11
2436 2487 3.778265 ACCATGTAATTCTTGCAACCCT 58.222 40.909 0.00 0.00 0.00 4.34
2437 2488 4.929479 ACCATGTAATTCTTGCAACCCTA 58.071 39.130 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
181 182 6.702716 ATTAGTCTAGCAGAGTAGGACAAC 57.297 41.667 0.00 0.00 32.23 3.32
292 293 2.681848 CCAAAGACAATGAGCTAGCTGG 59.318 50.000 24.99 10.05 0.00 4.85
498 512 7.882791 TGTGGTCTACATGCAAATATATTAGGG 59.117 37.037 0.00 0.00 33.42 3.53
519 533 1.142688 AATTGGAGGAGGCCTGTGGT 61.143 55.000 12.00 0.00 31.76 4.16
540 554 1.752694 CCACATAACCCCTTGCCGG 60.753 63.158 0.00 0.00 0.00 6.13
541 555 1.752694 CCCACATAACCCCTTGCCG 60.753 63.158 0.00 0.00 0.00 5.69
919 933 5.911178 TGGACCAAACAGAAGGGATATAGAT 59.089 40.000 0.00 0.00 0.00 1.98
1045 1060 3.873361 TGTTCAGAGCAGAAAAGACAGTG 59.127 43.478 0.00 0.00 0.00 3.66
1236 1251 4.640771 TCTAGTTTTCCACAAGCTCCAT 57.359 40.909 0.00 0.00 0.00 3.41
1338 1353 5.062683 CGAGTCTTTGGTGTACAGAATCATG 59.937 44.000 0.00 0.00 32.38 3.07
1377 1392 5.584913 CAGGATATCCAGTGTAGTATCCCT 58.415 45.833 23.81 0.00 42.21 4.20
1490 1505 2.022718 TGCCAGCCCCAAAATTAAGT 57.977 45.000 0.00 0.00 0.00 2.24
1617 1632 3.045634 TCTTCTTGAGGGGTTGAGTTGA 58.954 45.455 0.00 0.00 0.00 3.18
1848 1888 2.161410 GCATACCTCAAACGCATGTTCA 59.839 45.455 0.00 0.00 37.31 3.18
1865 1910 0.398696 AGTCCCAACAACCACGCATA 59.601 50.000 0.00 0.00 0.00 3.14
1870 1915 0.755327 AAGCCAGTCCCAACAACCAC 60.755 55.000 0.00 0.00 0.00 4.16
1902 1947 2.503775 CCCCCGGTTCCATTCAATG 58.496 57.895 0.00 0.00 0.00 2.82
1951 2002 5.243426 TCTTACTTTGCACTCAAAACACC 57.757 39.130 0.00 0.00 41.22 4.16
1952 2003 4.735338 GCTCTTACTTTGCACTCAAAACAC 59.265 41.667 0.00 0.00 41.22 3.32
1953 2004 4.397730 TGCTCTTACTTTGCACTCAAAACA 59.602 37.500 0.00 0.00 41.22 2.83
1954 2005 4.920376 TGCTCTTACTTTGCACTCAAAAC 58.080 39.130 0.00 0.00 41.22 2.43
1955 2006 5.532406 AGATGCTCTTACTTTGCACTCAAAA 59.468 36.000 0.00 0.00 41.22 2.44
1957 2008 4.645535 AGATGCTCTTACTTTGCACTCAA 58.354 39.130 0.00 0.00 39.63 3.02
1959 2010 5.171476 TGTAGATGCTCTTACTTTGCACTC 58.829 41.667 0.00 0.00 39.63 3.51
1960 2011 5.152623 TGTAGATGCTCTTACTTTGCACT 57.847 39.130 0.00 0.00 39.63 4.40
1962 2013 3.935203 GCTGTAGATGCTCTTACTTTGCA 59.065 43.478 0.00 0.00 41.13 4.08
1963 2014 3.311048 GGCTGTAGATGCTCTTACTTTGC 59.689 47.826 0.00 0.00 0.00 3.68
1964 2015 3.553511 CGGCTGTAGATGCTCTTACTTTG 59.446 47.826 0.00 0.00 0.00 2.77
1965 2016 3.195825 ACGGCTGTAGATGCTCTTACTTT 59.804 43.478 0.00 0.00 0.00 2.66
1966 2017 2.761208 ACGGCTGTAGATGCTCTTACTT 59.239 45.455 0.00 0.00 0.00 2.24
1967 2018 2.379972 ACGGCTGTAGATGCTCTTACT 58.620 47.619 0.00 0.00 0.00 2.24
1968 2019 2.873133 ACGGCTGTAGATGCTCTTAC 57.127 50.000 0.00 0.00 0.00 2.34
1969 2020 4.262036 CCAATACGGCTGTAGATGCTCTTA 60.262 45.833 11.78 0.00 33.17 2.10
1970 2021 3.493350 CCAATACGGCTGTAGATGCTCTT 60.493 47.826 11.78 0.00 33.17 2.85
1971 2022 2.036475 CCAATACGGCTGTAGATGCTCT 59.964 50.000 11.78 0.00 33.17 4.09
1972 2023 2.035961 TCCAATACGGCTGTAGATGCTC 59.964 50.000 11.78 0.00 33.17 4.26
1973 2024 2.039418 TCCAATACGGCTGTAGATGCT 58.961 47.619 11.78 0.00 33.17 3.79
1974 2025 2.135933 GTCCAATACGGCTGTAGATGC 58.864 52.381 11.78 0.00 33.17 3.91
1975 2026 3.452755 TGTCCAATACGGCTGTAGATG 57.547 47.619 11.78 12.06 33.17 2.90
1976 2027 4.481368 TTTGTCCAATACGGCTGTAGAT 57.519 40.909 11.78 0.00 33.17 1.98
1977 2028 3.965379 TTTGTCCAATACGGCTGTAGA 57.035 42.857 11.78 0.16 33.17 2.59
1978 2029 3.560068 GGATTTGTCCAATACGGCTGTAG 59.440 47.826 11.78 0.00 33.17 2.74
1979 2030 3.537580 GGATTTGTCCAATACGGCTGTA 58.462 45.455 8.08 8.08 34.45 2.74
1980 2031 2.365582 GGATTTGTCCAATACGGCTGT 58.634 47.619 2.42 2.42 33.14 4.40
1981 2032 1.330521 CGGATTTGTCCAATACGGCTG 59.669 52.381 0.00 0.00 44.53 4.85
1982 2033 1.663695 CGGATTTGTCCAATACGGCT 58.336 50.000 0.00 0.00 44.53 5.52
1986 2037 1.947456 GGAGCCGGATTTGTCCAATAC 59.053 52.381 5.05 0.00 0.00 1.89
1987 2038 1.843851 AGGAGCCGGATTTGTCCAATA 59.156 47.619 5.05 0.00 0.00 1.90
1988 2039 0.625849 AGGAGCCGGATTTGTCCAAT 59.374 50.000 5.05 0.00 0.00 3.16
1989 2040 0.035439 GAGGAGCCGGATTTGTCCAA 60.035 55.000 5.05 0.00 0.00 3.53
1990 2041 1.198094 TGAGGAGCCGGATTTGTCCA 61.198 55.000 5.05 0.00 0.00 4.02
1991 2042 0.462759 CTGAGGAGCCGGATTTGTCC 60.463 60.000 5.05 1.95 0.00 4.02
1992 2043 0.462759 CCTGAGGAGCCGGATTTGTC 60.463 60.000 5.05 0.00 0.00 3.18
1993 2044 1.604378 CCTGAGGAGCCGGATTTGT 59.396 57.895 5.05 0.00 0.00 2.83
1994 2045 1.821332 GCCTGAGGAGCCGGATTTG 60.821 63.158 5.05 0.00 0.00 2.32
1995 2046 2.592308 GCCTGAGGAGCCGGATTT 59.408 61.111 5.05 0.00 0.00 2.17
1996 2047 3.483869 GGCCTGAGGAGCCGGATT 61.484 66.667 5.05 0.00 41.41 3.01
2002 2053 1.676967 CAAACAGGGCCTGAGGAGC 60.677 63.158 38.99 0.00 35.18 4.70
2003 2054 1.001641 CCAAACAGGGCCTGAGGAG 60.002 63.158 38.99 23.12 35.18 3.69
2004 2055 1.360393 AACCAAACAGGGCCTGAGGA 61.360 55.000 38.99 0.00 43.89 3.71
2005 2056 0.895559 GAACCAAACAGGGCCTGAGG 60.896 60.000 38.99 33.22 43.89 3.86
2006 2057 0.178992 TGAACCAAACAGGGCCTGAG 60.179 55.000 38.99 25.46 43.89 3.35
2007 2058 0.178992 CTGAACCAAACAGGGCCTGA 60.179 55.000 38.99 13.75 43.89 3.86
2008 2059 1.809567 GCTGAACCAAACAGGGCCTG 61.810 60.000 31.62 31.62 43.89 4.85
2009 2060 1.531602 GCTGAACCAAACAGGGCCT 60.532 57.895 0.00 0.00 43.89 5.19
2010 2061 1.115326 AAGCTGAACCAAACAGGGCC 61.115 55.000 0.00 0.00 43.89 5.80
2011 2062 0.752658 AAAGCTGAACCAAACAGGGC 59.247 50.000 0.00 0.00 43.89 5.19
2012 2063 4.615912 CGATAAAAGCTGAACCAAACAGGG 60.616 45.833 0.00 0.00 43.89 4.45
2013 2064 4.215399 TCGATAAAAGCTGAACCAAACAGG 59.785 41.667 0.00 0.00 45.67 4.00
2014 2065 5.147162 GTCGATAAAAGCTGAACCAAACAG 58.853 41.667 0.00 0.00 38.27 3.16
2015 2066 4.576873 TGTCGATAAAAGCTGAACCAAACA 59.423 37.500 0.00 0.00 0.00 2.83
2016 2067 5.049680 TCTGTCGATAAAAGCTGAACCAAAC 60.050 40.000 0.00 0.00 0.00 2.93
2017 2068 5.060506 TCTGTCGATAAAAGCTGAACCAAA 58.939 37.500 0.00 0.00 0.00 3.28
2018 2069 4.637276 TCTGTCGATAAAAGCTGAACCAA 58.363 39.130 0.00 0.00 0.00 3.67
2019 2070 4.265904 TCTGTCGATAAAAGCTGAACCA 57.734 40.909 0.00 0.00 0.00 3.67
2020 2071 5.220681 GGAATCTGTCGATAAAAGCTGAACC 60.221 44.000 0.00 0.00 0.00 3.62
2021 2072 5.500931 CGGAATCTGTCGATAAAAGCTGAAC 60.501 44.000 0.00 0.00 0.00 3.18
2022 2073 4.566759 CGGAATCTGTCGATAAAAGCTGAA 59.433 41.667 0.00 0.00 0.00 3.02
2023 2074 4.112634 CGGAATCTGTCGATAAAAGCTGA 58.887 43.478 0.00 0.00 0.00 4.26
2024 2075 3.302740 GCGGAATCTGTCGATAAAAGCTG 60.303 47.826 0.00 0.00 0.00 4.24
2025 2076 2.866762 GCGGAATCTGTCGATAAAAGCT 59.133 45.455 0.00 0.00 0.00 3.74
2026 2077 2.866762 AGCGGAATCTGTCGATAAAAGC 59.133 45.455 0.00 0.00 0.00 3.51
2027 2078 3.302740 GCAGCGGAATCTGTCGATAAAAG 60.303 47.826 0.00 0.00 36.49 2.27
2028 2079 2.607635 GCAGCGGAATCTGTCGATAAAA 59.392 45.455 0.00 0.00 36.49 1.52
2029 2080 2.201732 GCAGCGGAATCTGTCGATAAA 58.798 47.619 0.00 0.00 36.49 1.40
2030 2081 1.538204 GGCAGCGGAATCTGTCGATAA 60.538 52.381 0.00 0.00 36.49 1.75
2031 2082 0.032130 GGCAGCGGAATCTGTCGATA 59.968 55.000 0.00 0.00 36.49 2.92
2032 2083 1.227380 GGCAGCGGAATCTGTCGAT 60.227 57.895 0.00 0.00 36.49 3.59
2033 2084 2.184322 GGCAGCGGAATCTGTCGA 59.816 61.111 0.00 0.00 36.49 4.20
2035 2086 3.567797 GCGGCAGCGGAATCTGTC 61.568 66.667 3.69 0.00 36.49 3.51
2047 2098 4.765449 AGATTCTGCTGCGCGGCA 62.765 61.111 39.10 39.10 40.15 5.69
2048 2099 4.233635 CAGATTCTGCTGCGCGGC 62.234 66.667 34.00 34.00 34.49 6.53
2049 2100 2.102438 TTCAGATTCTGCTGCGCGG 61.102 57.895 13.18 13.18 35.86 6.46
2050 2101 1.059994 GTTCAGATTCTGCTGCGCG 59.940 57.895 8.89 0.00 35.86 6.86
2051 2102 1.300971 TGGTTCAGATTCTGCTGCGC 61.301 55.000 8.89 0.00 35.86 6.09
2052 2103 1.159285 TTGGTTCAGATTCTGCTGCG 58.841 50.000 8.89 0.00 35.86 5.18
2053 2104 2.094854 CCTTTGGTTCAGATTCTGCTGC 60.095 50.000 8.89 0.00 35.86 5.25
2054 2105 2.490903 CCCTTTGGTTCAGATTCTGCTG 59.509 50.000 8.89 0.00 37.24 4.41
2055 2106 2.800250 CCCTTTGGTTCAGATTCTGCT 58.200 47.619 8.89 0.00 0.00 4.24
2056 2107 1.203287 GCCCTTTGGTTCAGATTCTGC 59.797 52.381 8.89 0.00 0.00 4.26
2057 2108 1.470098 CGCCCTTTGGTTCAGATTCTG 59.530 52.381 7.38 7.38 0.00 3.02
2058 2109 1.351017 TCGCCCTTTGGTTCAGATTCT 59.649 47.619 0.00 0.00 0.00 2.40
2059 2110 1.821216 TCGCCCTTTGGTTCAGATTC 58.179 50.000 0.00 0.00 0.00 2.52
2060 2111 1.886542 GTTCGCCCTTTGGTTCAGATT 59.113 47.619 0.00 0.00 0.00 2.40
2061 2112 1.534729 GTTCGCCCTTTGGTTCAGAT 58.465 50.000 0.00 0.00 0.00 2.90
2062 2113 0.536460 GGTTCGCCCTTTGGTTCAGA 60.536 55.000 0.00 0.00 0.00 3.27
2063 2114 1.956802 GGTTCGCCCTTTGGTTCAG 59.043 57.895 0.00 0.00 0.00 3.02
2064 2115 4.167597 GGTTCGCCCTTTGGTTCA 57.832 55.556 0.00 0.00 0.00 3.18
2074 2125 2.115291 GGATTCTGCTGGGTTCGCC 61.115 63.158 0.00 0.00 0.00 5.54
2075 2126 0.960364 TTGGATTCTGCTGGGTTCGC 60.960 55.000 0.00 0.00 0.00 4.70
2076 2127 1.755179 ATTGGATTCTGCTGGGTTCG 58.245 50.000 0.00 0.00 0.00 3.95
2077 2128 3.511146 TGAAATTGGATTCTGCTGGGTTC 59.489 43.478 0.00 0.00 0.00 3.62
2078 2129 3.509442 TGAAATTGGATTCTGCTGGGTT 58.491 40.909 0.00 0.00 0.00 4.11
2079 2130 3.094572 CTGAAATTGGATTCTGCTGGGT 58.905 45.455 0.00 0.00 0.00 4.51
2080 2131 3.359033 TCTGAAATTGGATTCTGCTGGG 58.641 45.455 0.00 0.00 0.00 4.45
2081 2132 5.395682 TTTCTGAAATTGGATTCTGCTGG 57.604 39.130 0.00 0.00 0.00 4.85
2082 2133 6.040878 GGATTTCTGAAATTGGATTCTGCTG 58.959 40.000 16.14 0.00 0.00 4.41
2083 2134 5.163581 CGGATTTCTGAAATTGGATTCTGCT 60.164 40.000 16.14 0.00 0.00 4.24
2084 2135 5.039333 CGGATTTCTGAAATTGGATTCTGC 58.961 41.667 16.14 1.44 0.00 4.26
2085 2136 5.039333 GCGGATTTCTGAAATTGGATTCTG 58.961 41.667 16.14 9.65 0.00 3.02
2086 2137 4.952335 AGCGGATTTCTGAAATTGGATTCT 59.048 37.500 16.14 6.35 0.00 2.40
2087 2138 5.039333 CAGCGGATTTCTGAAATTGGATTC 58.961 41.667 16.14 4.17 33.54 2.52
2088 2139 4.678840 GCAGCGGATTTCTGAAATTGGATT 60.679 41.667 16.14 0.00 33.54 3.01
2089 2140 3.181483 GCAGCGGATTTCTGAAATTGGAT 60.181 43.478 16.14 7.92 33.54 3.41
2090 2141 2.164219 GCAGCGGATTTCTGAAATTGGA 59.836 45.455 16.14 0.00 33.54 3.53
2091 2142 2.533266 GCAGCGGATTTCTGAAATTGG 58.467 47.619 16.14 12.03 33.54 3.16
2092 2143 2.094597 TGGCAGCGGATTTCTGAAATTG 60.095 45.455 16.14 11.49 33.54 2.32
2093 2144 2.170166 TGGCAGCGGATTTCTGAAATT 58.830 42.857 16.14 0.00 33.54 1.82
2094 2145 1.838112 TGGCAGCGGATTTCTGAAAT 58.162 45.000 15.09 15.09 33.54 2.17
2095 2146 1.614996 TTGGCAGCGGATTTCTGAAA 58.385 45.000 5.15 5.15 33.54 2.69
2096 2147 1.614996 TTTGGCAGCGGATTTCTGAA 58.385 45.000 0.00 0.00 33.54 3.02
2097 2148 1.614996 TTTTGGCAGCGGATTTCTGA 58.385 45.000 0.00 0.00 33.54 3.27
2098 2149 2.165030 AGATTTTGGCAGCGGATTTCTG 59.835 45.455 0.00 0.00 34.79 3.02
2099 2150 2.165030 CAGATTTTGGCAGCGGATTTCT 59.835 45.455 0.00 0.00 0.00 2.52
2100 2151 2.164219 TCAGATTTTGGCAGCGGATTTC 59.836 45.455 0.00 0.00 0.00 2.17
2101 2152 2.170166 TCAGATTTTGGCAGCGGATTT 58.830 42.857 0.00 0.00 0.00 2.17
2102 2153 1.838112 TCAGATTTTGGCAGCGGATT 58.162 45.000 0.00 0.00 0.00 3.01
2103 2154 1.474077 GTTCAGATTTTGGCAGCGGAT 59.526 47.619 0.00 0.00 0.00 4.18
2104 2155 0.881118 GTTCAGATTTTGGCAGCGGA 59.119 50.000 0.00 0.00 0.00 5.54
2105 2156 0.109132 GGTTCAGATTTTGGCAGCGG 60.109 55.000 0.00 0.00 0.00 5.52
2106 2157 0.597568 TGGTTCAGATTTTGGCAGCG 59.402 50.000 0.00 0.00 0.00 5.18
2107 2158 2.818130 TTGGTTCAGATTTTGGCAGC 57.182 45.000 0.00 0.00 0.00 5.25
2108 2159 3.495753 GCTTTTGGTTCAGATTTTGGCAG 59.504 43.478 0.00 0.00 0.00 4.85
2109 2160 3.465871 GCTTTTGGTTCAGATTTTGGCA 58.534 40.909 0.00 0.00 0.00 4.92
2110 2161 2.476241 CGCTTTTGGTTCAGATTTTGGC 59.524 45.455 0.00 0.00 0.00 4.52
2111 2162 3.059166 CCGCTTTTGGTTCAGATTTTGG 58.941 45.455 0.00 0.00 0.00 3.28
2112 2163 3.976169 TCCGCTTTTGGTTCAGATTTTG 58.024 40.909 0.00 0.00 0.00 2.44
2113 2164 4.620982 CTTCCGCTTTTGGTTCAGATTTT 58.379 39.130 0.00 0.00 0.00 1.82
2114 2165 3.552890 GCTTCCGCTTTTGGTTCAGATTT 60.553 43.478 0.00 0.00 0.00 2.17
2115 2166 2.029918 GCTTCCGCTTTTGGTTCAGATT 60.030 45.455 0.00 0.00 0.00 2.40
2116 2167 1.541588 GCTTCCGCTTTTGGTTCAGAT 59.458 47.619 0.00 0.00 0.00 2.90
2117 2168 0.951558 GCTTCCGCTTTTGGTTCAGA 59.048 50.000 0.00 0.00 0.00 3.27
2118 2169 0.667993 TGCTTCCGCTTTTGGTTCAG 59.332 50.000 0.00 0.00 36.97 3.02
2119 2170 0.667993 CTGCTTCCGCTTTTGGTTCA 59.332 50.000 0.00 0.00 36.97 3.18
2120 2171 0.664466 GCTGCTTCCGCTTTTGGTTC 60.664 55.000 0.00 0.00 36.97 3.62
2121 2172 1.363807 GCTGCTTCCGCTTTTGGTT 59.636 52.632 0.00 0.00 36.97 3.67
2122 2173 2.564721 GGCTGCTTCCGCTTTTGGT 61.565 57.895 0.00 0.00 36.97 3.67
2123 2174 2.259511 GGCTGCTTCCGCTTTTGG 59.740 61.111 0.00 0.00 36.97 3.28
2124 2175 2.259511 GGGCTGCTTCCGCTTTTG 59.740 61.111 0.00 0.00 36.97 2.44
2125 2176 2.203480 TGGGCTGCTTCCGCTTTT 60.203 55.556 0.00 0.00 36.97 2.27
2126 2177 2.674380 CTGGGCTGCTTCCGCTTT 60.674 61.111 0.00 0.00 36.97 3.51
2127 2178 4.729918 CCTGGGCTGCTTCCGCTT 62.730 66.667 0.00 0.00 36.97 4.68
2131 2182 4.021925 ACGTCCTGGGCTGCTTCC 62.022 66.667 0.00 0.00 0.00 3.46
2132 2183 2.743928 CACGTCCTGGGCTGCTTC 60.744 66.667 0.00 0.00 0.00 3.86
2136 2187 2.281761 AAAGCACGTCCTGGGCTG 60.282 61.111 0.00 0.00 38.04 4.85
2137 2188 2.032681 GAAAGCACGTCCTGGGCT 59.967 61.111 0.00 0.00 40.14 5.19
2138 2189 3.056328 GGAAAGCACGTCCTGGGC 61.056 66.667 0.00 0.00 31.94 5.36
2139 2190 0.821711 TTTGGAAAGCACGTCCTGGG 60.822 55.000 0.00 0.00 36.03 4.45
2140 2191 1.028905 TTTTGGAAAGCACGTCCTGG 58.971 50.000 0.00 0.00 36.03 4.45
2141 2192 2.554032 AGATTTTGGAAAGCACGTCCTG 59.446 45.455 0.00 0.00 36.03 3.86
2142 2193 2.554032 CAGATTTTGGAAAGCACGTCCT 59.446 45.455 0.00 0.00 36.03 3.85
2143 2194 2.552315 TCAGATTTTGGAAAGCACGTCC 59.448 45.455 0.00 0.00 35.55 4.79
2144 2195 3.896648 TCAGATTTTGGAAAGCACGTC 57.103 42.857 0.00 0.00 0.00 4.34
2145 2196 4.321230 GGAATCAGATTTTGGAAAGCACGT 60.321 41.667 0.00 0.00 0.00 4.49
2146 2197 4.168760 GGAATCAGATTTTGGAAAGCACG 58.831 43.478 0.00 0.00 0.00 5.34
2147 2198 4.168760 CGGAATCAGATTTTGGAAAGCAC 58.831 43.478 0.00 0.00 0.00 4.40
2148 2199 3.367292 GCGGAATCAGATTTTGGAAAGCA 60.367 43.478 0.00 0.00 0.00 3.91
2149 2200 3.119352 AGCGGAATCAGATTTTGGAAAGC 60.119 43.478 0.00 0.00 0.00 3.51
2150 2201 4.418392 CAGCGGAATCAGATTTTGGAAAG 58.582 43.478 0.00 0.00 0.00 2.62
2151 2202 3.367292 GCAGCGGAATCAGATTTTGGAAA 60.367 43.478 0.00 0.00 0.00 3.13
2152 2203 2.164219 GCAGCGGAATCAGATTTTGGAA 59.836 45.455 0.00 0.00 0.00 3.53
2153 2204 1.745087 GCAGCGGAATCAGATTTTGGA 59.255 47.619 0.00 0.00 0.00 3.53
2154 2205 1.532505 CGCAGCGGAATCAGATTTTGG 60.533 52.381 7.00 0.00 0.00 3.28
2155 2206 1.818850 CGCAGCGGAATCAGATTTTG 58.181 50.000 7.00 0.00 0.00 2.44
2168 2219 3.443045 AGATTTTGGCCCGCAGCG 61.443 61.111 8.18 8.18 45.17 5.18
2169 2220 1.876497 TTCAGATTTTGGCCCGCAGC 61.876 55.000 0.00 0.00 42.60 5.25
2170 2221 0.602562 TTTCAGATTTTGGCCCGCAG 59.397 50.000 0.00 0.00 0.00 5.18
2171 2222 1.043816 TTTTCAGATTTTGGCCCGCA 58.956 45.000 0.00 0.00 0.00 5.69
2172 2223 1.428448 GTTTTCAGATTTTGGCCCGC 58.572 50.000 0.00 0.00 0.00 6.13
2173 2224 1.696988 CGTTTTCAGATTTTGGCCCG 58.303 50.000 0.00 0.00 0.00 6.13
2174 2225 1.000843 AGCGTTTTCAGATTTTGGCCC 59.999 47.619 0.00 0.00 0.00 5.80
2175 2226 2.061028 CAGCGTTTTCAGATTTTGGCC 58.939 47.619 0.00 0.00 0.00 5.36
2176 2227 2.742774 ACAGCGTTTTCAGATTTTGGC 58.257 42.857 0.00 0.00 0.00 4.52
2177 2228 5.698832 TGATACAGCGTTTTCAGATTTTGG 58.301 37.500 0.00 0.00 0.00 3.28
2178 2229 6.843676 CTGATACAGCGTTTTCAGATTTTG 57.156 37.500 11.95 0.00 38.25 2.44
2193 2244 1.825090 TGGCAAACCAGCTGATACAG 58.175 50.000 17.39 0.00 42.67 2.74
2201 2252 7.530735 AATGTAGGTCATTTGGCAAACCAGC 62.531 44.000 16.00 13.65 43.33 4.85
2202 2253 4.021192 AATGTAGGTCATTTGGCAAACCAG 60.021 41.667 16.00 8.58 43.33 4.00
2203 2254 3.900601 AATGTAGGTCATTTGGCAAACCA 59.099 39.130 16.00 1.33 43.33 3.67
2204 2255 4.535526 AATGTAGGTCATTTGGCAAACC 57.464 40.909 16.00 13.12 43.33 3.27
2226 2277 9.023962 ACAGCTGTGGAAAATCTGATATAAAAA 57.976 29.630 20.97 0.00 0.00 1.94
2227 2278 8.579850 ACAGCTGTGGAAAATCTGATATAAAA 57.420 30.769 20.97 0.00 0.00 1.52
2228 2279 8.579850 AACAGCTGTGGAAAATCTGATATAAA 57.420 30.769 22.49 0.00 0.00 1.40
2229 2280 8.579850 AAACAGCTGTGGAAAATCTGATATAA 57.420 30.769 22.49 0.00 0.00 0.98
2230 2281 8.049117 AGAAACAGCTGTGGAAAATCTGATATA 58.951 33.333 22.49 0.00 0.00 0.86
2231 2282 6.888632 AGAAACAGCTGTGGAAAATCTGATAT 59.111 34.615 22.49 0.00 0.00 1.63
2232 2283 6.240894 AGAAACAGCTGTGGAAAATCTGATA 58.759 36.000 22.49 0.00 0.00 2.15
2233 2284 5.075493 AGAAACAGCTGTGGAAAATCTGAT 58.925 37.500 22.49 0.00 0.00 2.90
2234 2285 4.464008 AGAAACAGCTGTGGAAAATCTGA 58.536 39.130 22.49 0.00 0.00 3.27
2235 2286 4.320788 GGAGAAACAGCTGTGGAAAATCTG 60.321 45.833 22.49 0.00 0.00 2.90
2236 2287 3.823304 GGAGAAACAGCTGTGGAAAATCT 59.177 43.478 22.49 16.11 0.00 2.40
2237 2288 3.569701 TGGAGAAACAGCTGTGGAAAATC 59.430 43.478 22.49 12.41 0.00 2.17
2238 2289 3.319122 GTGGAGAAACAGCTGTGGAAAAT 59.681 43.478 22.49 0.00 0.00 1.82
2239 2290 2.687935 GTGGAGAAACAGCTGTGGAAAA 59.312 45.455 22.49 1.99 0.00 2.29
2240 2291 2.297701 GTGGAGAAACAGCTGTGGAAA 58.702 47.619 22.49 1.38 0.00 3.13
2241 2292 1.211703 TGTGGAGAAACAGCTGTGGAA 59.788 47.619 22.49 0.21 0.00 3.53
2242 2293 0.836606 TGTGGAGAAACAGCTGTGGA 59.163 50.000 22.49 0.00 0.00 4.02
2243 2294 1.233019 CTGTGGAGAAACAGCTGTGG 58.767 55.000 22.49 0.00 41.05 4.17
2250 2301 4.644234 TGAAAAATCTGCTGTGGAGAAACA 59.356 37.500 0.00 0.00 0.00 2.83
2251 2302 4.978580 GTGAAAAATCTGCTGTGGAGAAAC 59.021 41.667 0.00 0.00 0.00 2.78
2252 2303 4.644234 TGTGAAAAATCTGCTGTGGAGAAA 59.356 37.500 0.00 0.00 0.00 2.52
2253 2304 4.206375 TGTGAAAAATCTGCTGTGGAGAA 58.794 39.130 0.00 0.00 0.00 2.87
2254 2305 3.817084 CTGTGAAAAATCTGCTGTGGAGA 59.183 43.478 0.00 0.00 0.00 3.71
2255 2306 3.611057 GCTGTGAAAAATCTGCTGTGGAG 60.611 47.826 0.00 0.00 0.00 3.86
2256 2307 2.294233 GCTGTGAAAAATCTGCTGTGGA 59.706 45.455 0.00 0.00 0.00 4.02
2257 2308 2.295349 AGCTGTGAAAAATCTGCTGTGG 59.705 45.455 0.00 0.00 37.44 4.17
2258 2309 3.637998 AGCTGTGAAAAATCTGCTGTG 57.362 42.857 0.00 0.00 37.44 3.66
2259 2310 4.392940 AGTAGCTGTGAAAAATCTGCTGT 58.607 39.130 0.00 0.00 38.77 4.40
2260 2311 5.368256 AAGTAGCTGTGAAAAATCTGCTG 57.632 39.130 0.00 0.00 38.77 4.41
2261 2312 6.396829 AAAAGTAGCTGTGAAAAATCTGCT 57.603 33.333 0.00 0.00 40.71 4.24
2262 2313 7.584987 TCTAAAAGTAGCTGTGAAAAATCTGC 58.415 34.615 0.00 0.00 0.00 4.26
2263 2314 9.950680 TTTCTAAAAGTAGCTGTGAAAAATCTG 57.049 29.630 0.00 0.00 0.00 2.90
2266 2317 9.914131 GGATTTCTAAAAGTAGCTGTGAAAAAT 57.086 29.630 0.00 0.00 0.00 1.82
2267 2318 8.908903 TGGATTTCTAAAAGTAGCTGTGAAAAA 58.091 29.630 0.00 0.00 0.00 1.94
2268 2319 8.349983 GTGGATTTCTAAAAGTAGCTGTGAAAA 58.650 33.333 0.00 0.00 0.00 2.29
2269 2320 7.500892 TGTGGATTTCTAAAAGTAGCTGTGAAA 59.499 33.333 0.00 0.00 0.00 2.69
2270 2321 6.995686 TGTGGATTTCTAAAAGTAGCTGTGAA 59.004 34.615 0.00 0.00 0.00 3.18
2271 2322 6.530120 TGTGGATTTCTAAAAGTAGCTGTGA 58.470 36.000 0.00 0.00 0.00 3.58
2272 2323 6.621596 GCTGTGGATTTCTAAAAGTAGCTGTG 60.622 42.308 0.00 0.00 0.00 3.66
2273 2324 5.412904 GCTGTGGATTTCTAAAAGTAGCTGT 59.587 40.000 0.00 0.00 0.00 4.40
2274 2325 5.163713 GGCTGTGGATTTCTAAAAGTAGCTG 60.164 44.000 0.00 0.00 0.00 4.24
2275 2326 4.944317 GGCTGTGGATTTCTAAAAGTAGCT 59.056 41.667 0.00 0.00 0.00 3.32
2276 2327 4.201822 CGGCTGTGGATTTCTAAAAGTAGC 60.202 45.833 0.00 0.00 0.00 3.58
2277 2328 5.175859 TCGGCTGTGGATTTCTAAAAGTAG 58.824 41.667 0.00 0.00 0.00 2.57
2278 2329 5.155278 TCGGCTGTGGATTTCTAAAAGTA 57.845 39.130 0.00 0.00 0.00 2.24
2279 2330 4.015872 TCGGCTGTGGATTTCTAAAAGT 57.984 40.909 0.00 0.00 0.00 2.66
2280 2331 4.379499 GGTTCGGCTGTGGATTTCTAAAAG 60.379 45.833 0.00 0.00 0.00 2.27
2281 2332 3.504520 GGTTCGGCTGTGGATTTCTAAAA 59.495 43.478 0.00 0.00 0.00 1.52
2282 2333 3.078837 GGTTCGGCTGTGGATTTCTAAA 58.921 45.455 0.00 0.00 0.00 1.85
2283 2334 2.039216 TGGTTCGGCTGTGGATTTCTAA 59.961 45.455 0.00 0.00 0.00 2.10
2284 2335 1.626321 TGGTTCGGCTGTGGATTTCTA 59.374 47.619 0.00 0.00 0.00 2.10
2285 2336 0.400213 TGGTTCGGCTGTGGATTTCT 59.600 50.000 0.00 0.00 0.00 2.52
2286 2337 1.243902 TTGGTTCGGCTGTGGATTTC 58.756 50.000 0.00 0.00 0.00 2.17
2287 2338 1.339929 GTTTGGTTCGGCTGTGGATTT 59.660 47.619 0.00 0.00 0.00 2.17
2288 2339 0.958822 GTTTGGTTCGGCTGTGGATT 59.041 50.000 0.00 0.00 0.00 3.01
2289 2340 0.179004 TGTTTGGTTCGGCTGTGGAT 60.179 50.000 0.00 0.00 0.00 3.41
2290 2341 0.817634 CTGTTTGGTTCGGCTGTGGA 60.818 55.000 0.00 0.00 0.00 4.02
2291 2342 1.654220 CTGTTTGGTTCGGCTGTGG 59.346 57.895 0.00 0.00 0.00 4.17
2292 2343 1.654220 CCTGTTTGGTTCGGCTGTG 59.346 57.895 0.00 0.00 0.00 3.66
2293 2344 1.528309 CCCTGTTTGGTTCGGCTGT 60.528 57.895 0.00 0.00 0.00 4.40
2294 2345 2.919494 GCCCTGTTTGGTTCGGCTG 61.919 63.158 0.00 0.00 36.65 4.85
2295 2346 2.597510 GCCCTGTTTGGTTCGGCT 60.598 61.111 0.00 0.00 36.65 5.52
2296 2347 3.680786 GGCCCTGTTTGGTTCGGC 61.681 66.667 0.00 0.00 38.96 5.54
2297 2348 1.971695 GAGGCCCTGTTTGGTTCGG 60.972 63.158 0.00 0.00 0.00 4.30
2298 2349 0.821711 TTGAGGCCCTGTTTGGTTCG 60.822 55.000 0.00 0.00 0.00 3.95
2299 2350 1.068588 GTTTGAGGCCCTGTTTGGTTC 59.931 52.381 0.00 0.00 0.00 3.62
2300 2351 1.119684 GTTTGAGGCCCTGTTTGGTT 58.880 50.000 0.00 0.00 0.00 3.67
2301 2352 0.032615 TGTTTGAGGCCCTGTTTGGT 60.033 50.000 0.00 0.00 0.00 3.67
2302 2353 0.389025 GTGTTTGAGGCCCTGTTTGG 59.611 55.000 0.00 0.00 0.00 3.28
2303 2354 1.110442 TGTGTTTGAGGCCCTGTTTG 58.890 50.000 0.00 0.00 0.00 2.93
2304 2355 1.111277 GTGTGTTTGAGGCCCTGTTT 58.889 50.000 0.00 0.00 0.00 2.83
2305 2356 1.101049 CGTGTGTTTGAGGCCCTGTT 61.101 55.000 0.00 0.00 0.00 3.16
2306 2357 1.525995 CGTGTGTTTGAGGCCCTGT 60.526 57.895 0.00 0.00 0.00 4.00
2307 2358 2.908073 GCGTGTGTTTGAGGCCCTG 61.908 63.158 0.00 0.00 0.00 4.45
2308 2359 2.594592 GCGTGTGTTTGAGGCCCT 60.595 61.111 0.00 0.00 0.00 5.19
2309 2360 4.025401 CGCGTGTGTTTGAGGCCC 62.025 66.667 0.00 0.00 0.00 5.80
2310 2361 4.025401 CCGCGTGTGTTTGAGGCC 62.025 66.667 4.92 0.00 0.00 5.19
2311 2362 2.970324 TCCGCGTGTGTTTGAGGC 60.970 61.111 4.92 0.00 0.00 4.70
2312 2363 2.935955 GTCCGCGTGTGTTTGAGG 59.064 61.111 4.92 0.00 0.00 3.86
2313 2364 2.544359 CGTCCGCGTGTGTTTGAG 59.456 61.111 4.92 0.00 0.00 3.02
2314 2365 3.632107 GCGTCCGCGTGTGTTTGA 61.632 61.111 4.92 0.00 40.81 2.69
2352 2403 2.067091 TATAAGGCGCGTCCGGTCAG 62.067 60.000 7.31 0.00 40.77 3.51
2353 2404 1.457823 ATATAAGGCGCGTCCGGTCA 61.458 55.000 7.31 0.00 40.77 4.02
2354 2405 0.319297 AATATAAGGCGCGTCCGGTC 60.319 55.000 7.31 0.00 40.77 4.79
2355 2406 0.105408 AAATATAAGGCGCGTCCGGT 59.895 50.000 7.31 5.61 40.77 5.28
2356 2407 0.788391 GAAATATAAGGCGCGTCCGG 59.212 55.000 7.31 0.00 40.77 5.14
2357 2408 0.433492 CGAAATATAAGGCGCGTCCG 59.567 55.000 7.31 0.00 40.77 4.79
2358 2409 1.454653 GACGAAATATAAGGCGCGTCC 59.545 52.381 7.31 9.59 41.38 4.79
2359 2410 2.391879 AGACGAAATATAAGGCGCGTC 58.608 47.619 0.21 0.21 45.83 5.19
2360 2411 2.503920 AGACGAAATATAAGGCGCGT 57.496 45.000 8.43 0.00 34.39 6.01
2361 2412 3.050619 AGAAGACGAAATATAAGGCGCG 58.949 45.455 0.00 0.00 0.00 6.86
2362 2413 4.980434 TGTAGAAGACGAAATATAAGGCGC 59.020 41.667 0.00 0.00 0.00 6.53
2363 2414 7.409449 CGAATGTAGAAGACGAAATATAAGGCG 60.409 40.741 0.00 0.00 0.00 5.52
2364 2415 7.619571 GCGAATGTAGAAGACGAAATATAAGGC 60.620 40.741 0.00 0.00 0.00 4.35
2365 2416 7.409449 CGCGAATGTAGAAGACGAAATATAAGG 60.409 40.741 0.00 0.00 0.00 2.69
2366 2417 7.113124 ACGCGAATGTAGAAGACGAAATATAAG 59.887 37.037 15.93 0.00 0.00 1.73
2367 2418 6.914215 ACGCGAATGTAGAAGACGAAATATAA 59.086 34.615 15.93 0.00 0.00 0.98
2368 2419 6.432936 ACGCGAATGTAGAAGACGAAATATA 58.567 36.000 15.93 0.00 0.00 0.86
2369 2420 5.279384 ACGCGAATGTAGAAGACGAAATAT 58.721 37.500 15.93 0.00 0.00 1.28
2370 2421 4.665212 ACGCGAATGTAGAAGACGAAATA 58.335 39.130 15.93 0.00 0.00 1.40
2371 2422 3.508762 ACGCGAATGTAGAAGACGAAAT 58.491 40.909 15.93 0.00 0.00 2.17
2372 2423 2.937591 ACGCGAATGTAGAAGACGAAA 58.062 42.857 15.93 0.00 0.00 3.46
2373 2424 2.624316 ACGCGAATGTAGAAGACGAA 57.376 45.000 15.93 0.00 0.00 3.85
2374 2425 2.512885 GAACGCGAATGTAGAAGACGA 58.487 47.619 15.93 0.00 0.00 4.20
2375 2426 1.582502 GGAACGCGAATGTAGAAGACG 59.417 52.381 15.93 0.00 0.00 4.18
2376 2427 2.853003 GAGGAACGCGAATGTAGAAGAC 59.147 50.000 15.93 0.00 0.00 3.01
2377 2428 2.490509 TGAGGAACGCGAATGTAGAAGA 59.509 45.455 15.93 0.00 0.00 2.87
2378 2429 2.876091 TGAGGAACGCGAATGTAGAAG 58.124 47.619 15.93 0.00 0.00 2.85
2379 2430 3.520290 ATGAGGAACGCGAATGTAGAA 57.480 42.857 15.93 0.00 0.00 2.10
2380 2431 4.321008 GGATATGAGGAACGCGAATGTAGA 60.321 45.833 15.93 0.00 0.00 2.59
2381 2432 3.921021 GGATATGAGGAACGCGAATGTAG 59.079 47.826 15.93 0.00 0.00 2.74
2382 2433 3.319689 TGGATATGAGGAACGCGAATGTA 59.680 43.478 15.93 0.00 0.00 2.29
2383 2434 2.102420 TGGATATGAGGAACGCGAATGT 59.898 45.455 15.93 0.00 0.00 2.71
2384 2435 2.754472 TGGATATGAGGAACGCGAATG 58.246 47.619 15.93 0.00 0.00 2.67
2385 2436 3.469008 TTGGATATGAGGAACGCGAAT 57.531 42.857 15.93 0.00 0.00 3.34
2386 2437 2.971660 TTGGATATGAGGAACGCGAA 57.028 45.000 15.93 0.00 0.00 4.70
2387 2438 2.971660 TTTGGATATGAGGAACGCGA 57.028 45.000 15.93 0.00 0.00 5.87
2388 2439 3.809832 AGATTTTGGATATGAGGAACGCG 59.190 43.478 3.53 3.53 0.00 6.01
2389 2440 4.816385 TGAGATTTTGGATATGAGGAACGC 59.184 41.667 0.00 0.00 0.00 4.84
2390 2441 6.925610 TTGAGATTTTGGATATGAGGAACG 57.074 37.500 0.00 0.00 0.00 3.95
2391 2442 7.976175 GGTTTTGAGATTTTGGATATGAGGAAC 59.024 37.037 0.00 0.00 0.00 3.62
2392 2443 7.673504 TGGTTTTGAGATTTTGGATATGAGGAA 59.326 33.333 0.00 0.00 0.00 3.36
2393 2444 7.181361 TGGTTTTGAGATTTTGGATATGAGGA 58.819 34.615 0.00 0.00 0.00 3.71
2394 2445 7.408756 TGGTTTTGAGATTTTGGATATGAGG 57.591 36.000 0.00 0.00 0.00 3.86
2395 2446 8.472413 ACATGGTTTTGAGATTTTGGATATGAG 58.528 33.333 0.00 0.00 0.00 2.90
2396 2447 8.365060 ACATGGTTTTGAGATTTTGGATATGA 57.635 30.769 0.00 0.00 0.00 2.15
2400 2451 9.657419 GAATTACATGGTTTTGAGATTTTGGAT 57.343 29.630 0.00 0.00 0.00 3.41
2401 2452 8.869109 AGAATTACATGGTTTTGAGATTTTGGA 58.131 29.630 0.00 0.00 0.00 3.53
2402 2453 9.492973 AAGAATTACATGGTTTTGAGATTTTGG 57.507 29.630 0.00 0.00 0.00 3.28
2404 2455 8.992073 GCAAGAATTACATGGTTTTGAGATTTT 58.008 29.630 0.00 0.00 0.00 1.82
2405 2456 8.149647 TGCAAGAATTACATGGTTTTGAGATTT 58.850 29.630 0.00 0.00 0.00 2.17
2406 2457 7.669427 TGCAAGAATTACATGGTTTTGAGATT 58.331 30.769 0.00 0.00 0.00 2.40
2407 2458 7.230849 TGCAAGAATTACATGGTTTTGAGAT 57.769 32.000 0.00 0.00 0.00 2.75
2408 2459 6.647334 TGCAAGAATTACATGGTTTTGAGA 57.353 33.333 0.00 0.00 0.00 3.27
2409 2460 6.146021 GGTTGCAAGAATTACATGGTTTTGAG 59.854 38.462 0.00 0.00 0.00 3.02
2410 2461 5.988561 GGTTGCAAGAATTACATGGTTTTGA 59.011 36.000 0.00 0.00 0.00 2.69
2411 2462 5.179182 GGGTTGCAAGAATTACATGGTTTTG 59.821 40.000 0.00 0.00 0.00 2.44
2412 2463 5.071653 AGGGTTGCAAGAATTACATGGTTTT 59.928 36.000 0.00 0.00 0.00 2.43
2413 2464 4.592778 AGGGTTGCAAGAATTACATGGTTT 59.407 37.500 0.00 0.00 0.00 3.27
2414 2465 4.159557 AGGGTTGCAAGAATTACATGGTT 58.840 39.130 0.00 0.00 0.00 3.67
2415 2466 3.778265 AGGGTTGCAAGAATTACATGGT 58.222 40.909 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.