Multiple sequence alignment - TraesCS7D01G237100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G237100 chr7D 100.000 2600 0 0 1 2600 200764045 200766644 0.000000e+00 4802.0
1 TraesCS7D01G237100 chr7D 81.613 310 49 7 1180 1485 578465376 578465681 1.540000e-62 250.0
2 TraesCS7D01G237100 chr7B 93.001 2029 86 25 549 2542 165098146 165100153 0.000000e+00 2909.0
3 TraesCS7D01G237100 chr7B 98.182 55 1 0 2546 2600 165100267 165100321 2.130000e-16 97.1
4 TraesCS7D01G237100 chr7A 93.917 1463 44 21 612 2055 214301371 214302807 0.000000e+00 2167.0
5 TraesCS7D01G237100 chr7A 84.901 404 26 14 2081 2473 214302792 214303171 2.440000e-100 375.0
6 TraesCS7D01G237100 chr7A 80.000 310 54 7 1180 1485 670536908 670537213 3.370000e-54 222.0
7 TraesCS7D01G237100 chr7A 95.775 71 3 0 2472 2542 214303335 214303405 5.880000e-22 115.0
8 TraesCS7D01G237100 chr5D 89.313 524 36 13 1008 1530 369427841 369428345 7.850000e-180 640.0
9 TraesCS7D01G237100 chr5A 88.931 524 38 13 1008 1530 471946517 471947021 1.700000e-176 628.0
10 TraesCS7D01G237100 chr5B 88.550 524 40 13 1008 1530 438557155 438557659 3.680000e-173 617.0
11 TraesCS7D01G237100 chr4A 82.991 341 43 12 1181 1509 83572035 83571698 7.040000e-76 294.0
12 TraesCS7D01G237100 chr3D 80.319 188 29 7 1181 1364 55156659 55156842 4.510000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G237100 chr7D 200764045 200766644 2599 False 4802.000000 4802 100.0000 1 2600 1 chr7D.!!$F1 2599
1 TraesCS7D01G237100 chr7B 165098146 165100321 2175 False 1503.050000 2909 95.5915 549 2600 2 chr7B.!!$F1 2051
2 TraesCS7D01G237100 chr7A 214301371 214303405 2034 False 885.666667 2167 91.5310 612 2542 3 chr7A.!!$F2 1930
3 TraesCS7D01G237100 chr5D 369427841 369428345 504 False 640.000000 640 89.3130 1008 1530 1 chr5D.!!$F1 522
4 TraesCS7D01G237100 chr5A 471946517 471947021 504 False 628.000000 628 88.9310 1008 1530 1 chr5A.!!$F1 522
5 TraesCS7D01G237100 chr5B 438557155 438557659 504 False 617.000000 617 88.5500 1008 1530 1 chr5B.!!$F1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
268 269 0.172352 CCACGAGAAGAGGCTCTCAC 59.828 60.0 19.03 14.76 41.75 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1757 1783 1.069358 GATCAGAAGAACCTAGCCGGG 59.931 57.143 2.18 0.0 36.97 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.966215 CACGCCATGAACGAGGTT 58.034 55.556 13.95 0.00 0.00 3.50
18 19 1.497278 CACGCCATGAACGAGGTTG 59.503 57.895 13.95 0.00 0.00 3.77
19 20 2.325082 ACGCCATGAACGAGGTTGC 61.325 57.895 13.95 0.00 0.00 4.17
20 21 2.480555 GCCATGAACGAGGTTGCG 59.519 61.111 0.00 0.00 37.29 4.85
21 22 2.480555 CCATGAACGAGGTTGCGC 59.519 61.111 0.00 0.00 33.86 6.09
22 23 2.480555 CATGAACGAGGTTGCGCC 59.519 61.111 4.18 0.00 37.58 6.53
23 24 2.746277 ATGAACGAGGTTGCGCCC 60.746 61.111 4.18 0.00 38.26 6.13
41 42 4.814294 GCGCGTACCCTGGTGGAG 62.814 72.222 8.43 0.00 38.00 3.86
42 43 3.066190 CGCGTACCCTGGTGGAGA 61.066 66.667 0.00 0.00 38.00 3.71
43 44 2.577593 GCGTACCCTGGTGGAGAC 59.422 66.667 0.00 0.00 38.00 3.36
44 45 2.280552 GCGTACCCTGGTGGAGACA 61.281 63.158 0.00 0.00 38.00 3.41
45 46 1.890894 CGTACCCTGGTGGAGACAG 59.109 63.158 0.00 0.00 44.46 3.51
53 54 2.653702 GTGGAGACAGCGAGCAGT 59.346 61.111 0.00 0.00 44.46 4.40
54 55 1.445238 GTGGAGACAGCGAGCAGTC 60.445 63.158 11.86 11.86 44.46 3.51
55 56 1.903404 TGGAGACAGCGAGCAGTCA 60.903 57.895 19.89 0.72 35.33 3.41
56 57 1.445238 GGAGACAGCGAGCAGTCAC 60.445 63.158 19.89 14.42 35.33 3.67
57 58 1.287191 GAGACAGCGAGCAGTCACA 59.713 57.895 19.89 0.00 35.33 3.58
58 59 0.732196 GAGACAGCGAGCAGTCACAG 60.732 60.000 19.89 0.00 35.33 3.66
59 60 1.735920 GACAGCGAGCAGTCACAGG 60.736 63.158 14.36 0.00 33.48 4.00
60 61 3.117171 CAGCGAGCAGTCACAGGC 61.117 66.667 0.00 0.00 0.00 4.85
61 62 3.619767 AGCGAGCAGTCACAGGCA 61.620 61.111 0.00 0.00 0.00 4.75
62 63 3.117171 GCGAGCAGTCACAGGCAG 61.117 66.667 0.00 0.00 0.00 4.85
63 64 2.433838 CGAGCAGTCACAGGCAGG 60.434 66.667 0.00 0.00 0.00 4.85
64 65 2.746359 GAGCAGTCACAGGCAGGT 59.254 61.111 0.00 0.00 0.00 4.00
65 66 1.670406 GAGCAGTCACAGGCAGGTG 60.670 63.158 3.23 3.23 40.16 4.00
66 67 3.360340 GCAGTCACAGGCAGGTGC 61.360 66.667 4.63 0.00 38.66 5.01
76 77 3.271014 GCAGGTGCCATGTGTGAG 58.729 61.111 0.00 0.00 34.31 3.51
77 78 2.986306 GCAGGTGCCATGTGTGAGC 61.986 63.158 0.00 0.00 34.31 4.26
78 79 1.303074 CAGGTGCCATGTGTGAGCT 60.303 57.895 0.00 0.00 0.00 4.09
79 80 1.002868 AGGTGCCATGTGTGAGCTC 60.003 57.895 6.82 6.82 0.00 4.09
80 81 2.393768 GGTGCCATGTGTGAGCTCG 61.394 63.158 9.64 0.00 0.00 5.03
81 82 2.743538 TGCCATGTGTGAGCTCGC 60.744 61.111 20.51 20.51 0.00 5.03
82 83 3.857854 GCCATGTGTGAGCTCGCG 61.858 66.667 21.66 0.00 0.00 5.87
83 84 3.190849 CCATGTGTGAGCTCGCGG 61.191 66.667 21.66 12.99 0.00 6.46
84 85 3.190849 CATGTGTGAGCTCGCGGG 61.191 66.667 21.66 2.60 0.00 6.13
104 105 3.136123 CCACGCAAGCCCTGGATG 61.136 66.667 0.00 0.00 45.62 3.51
105 106 2.360350 CACGCAAGCCCTGGATGT 60.360 61.111 0.00 0.00 45.62 3.06
106 107 2.360350 ACGCAAGCCCTGGATGTG 60.360 61.111 0.00 0.60 45.62 3.21
107 108 3.136123 CGCAAGCCCTGGATGTGG 61.136 66.667 0.00 0.00 0.00 4.17
113 114 4.838152 CCCTGGATGTGGCGACCG 62.838 72.222 0.00 0.00 0.00 4.79
114 115 3.770040 CCTGGATGTGGCGACCGA 61.770 66.667 0.00 0.00 0.00 4.69
115 116 2.264480 CTGGATGTGGCGACCGAA 59.736 61.111 0.00 0.00 0.00 4.30
116 117 2.047655 TGGATGTGGCGACCGAAC 60.048 61.111 0.00 0.00 0.00 3.95
117 118 2.818274 GGATGTGGCGACCGAACC 60.818 66.667 0.00 0.00 0.00 3.62
118 119 2.047655 GATGTGGCGACCGAACCA 60.048 61.111 0.00 0.00 0.00 3.67
119 120 2.047274 ATGTGGCGACCGAACCAG 60.047 61.111 0.00 0.00 36.38 4.00
120 121 4.980805 TGTGGCGACCGAACCAGC 62.981 66.667 0.00 0.00 36.38 4.85
138 139 4.657824 CCGGCGCGGGTATAGGTG 62.658 72.222 24.78 0.00 44.15 4.00
139 140 4.657824 CGGCGCGGGTATAGGTGG 62.658 72.222 8.83 0.00 0.00 4.61
140 141 4.309950 GGCGCGGGTATAGGTGGG 62.310 72.222 8.83 0.00 0.00 4.61
141 142 4.982749 GCGCGGGTATAGGTGGGC 62.983 72.222 8.83 0.00 0.00 5.36
142 143 4.309950 CGCGGGTATAGGTGGGCC 62.310 72.222 0.00 0.00 0.00 5.80
143 144 3.949980 GCGGGTATAGGTGGGCCC 61.950 72.222 17.59 17.59 37.79 5.80
144 145 2.446994 CGGGTATAGGTGGGCCCA 60.447 66.667 24.45 24.45 41.11 5.36
145 146 2.814835 CGGGTATAGGTGGGCCCAC 61.815 68.421 42.18 42.18 45.49 4.61
153 154 2.358737 GTGGGCCCACGAGAACAG 60.359 66.667 38.35 0.00 37.19 3.16
154 155 2.525629 TGGGCCCACGAGAACAGA 60.526 61.111 24.45 0.00 0.00 3.41
155 156 2.047179 GGGCCCACGAGAACAGAC 60.047 66.667 19.95 0.00 0.00 3.51
156 157 2.741092 GGCCCACGAGAACAGACA 59.259 61.111 0.00 0.00 0.00 3.41
157 158 1.374758 GGCCCACGAGAACAGACAG 60.375 63.158 0.00 0.00 0.00 3.51
158 159 1.374758 GCCCACGAGAACAGACAGG 60.375 63.158 0.00 0.00 0.00 4.00
159 160 1.374758 CCCACGAGAACAGACAGGC 60.375 63.158 0.00 0.00 0.00 4.85
160 161 1.367471 CCACGAGAACAGACAGGCA 59.633 57.895 0.00 0.00 0.00 4.75
161 162 0.668706 CCACGAGAACAGACAGGCAG 60.669 60.000 0.00 0.00 0.00 4.85
162 163 0.668706 CACGAGAACAGACAGGCAGG 60.669 60.000 0.00 0.00 0.00 4.85
163 164 1.079543 CGAGAACAGACAGGCAGGG 60.080 63.158 0.00 0.00 0.00 4.45
164 165 1.376553 GAGAACAGACAGGCAGGGC 60.377 63.158 0.00 0.00 0.00 5.19
187 188 2.561885 CGCGAGCCGGTATCCTAG 59.438 66.667 0.00 0.00 0.00 3.02
188 189 2.963371 GCGAGCCGGTATCCTAGG 59.037 66.667 0.82 0.82 0.00 3.02
189 190 1.902432 GCGAGCCGGTATCCTAGGT 60.902 63.158 9.08 0.00 0.00 3.08
190 191 1.957562 CGAGCCGGTATCCTAGGTG 59.042 63.158 9.08 0.00 0.00 4.00
191 192 1.524863 CGAGCCGGTATCCTAGGTGG 61.525 65.000 9.08 5.62 37.10 4.61
192 193 1.817911 GAGCCGGTATCCTAGGTGGC 61.818 65.000 9.08 14.75 42.76 5.01
193 194 2.138179 GCCGGTATCCTAGGTGGCA 61.138 63.158 19.52 0.00 42.03 4.92
194 195 1.746517 CCGGTATCCTAGGTGGCAC 59.253 63.158 9.70 9.70 35.26 5.01
195 196 1.746517 CGGTATCCTAGGTGGCACC 59.253 63.158 29.32 29.32 38.99 5.01
196 197 1.755393 CGGTATCCTAGGTGGCACCC 61.755 65.000 32.30 15.19 39.75 4.61
197 198 0.693092 GGTATCCTAGGTGGCACCCA 60.693 60.000 32.30 19.44 39.75 4.51
205 206 2.047560 GTGGCACCCACGACCTAC 60.048 66.667 6.29 0.00 44.95 3.18
206 207 3.315949 TGGCACCCACGACCTACC 61.316 66.667 0.00 0.00 0.00 3.18
207 208 3.315949 GGCACCCACGACCTACCA 61.316 66.667 0.00 0.00 0.00 3.25
208 209 2.264794 GCACCCACGACCTACCAG 59.735 66.667 0.00 0.00 0.00 4.00
209 210 2.580601 GCACCCACGACCTACCAGT 61.581 63.158 0.00 0.00 0.00 4.00
210 211 1.292223 CACCCACGACCTACCAGTG 59.708 63.158 0.00 0.00 35.79 3.66
211 212 1.154454 ACCCACGACCTACCAGTGA 59.846 57.895 0.00 0.00 38.06 3.41
212 213 0.898789 ACCCACGACCTACCAGTGAG 60.899 60.000 0.00 0.00 38.06 3.51
213 214 1.605058 CCCACGACCTACCAGTGAGG 61.605 65.000 0.00 0.00 45.67 3.86
222 223 3.642755 CCAGTGAGGTGACAACGC 58.357 61.111 0.00 0.00 0.00 4.84
223 224 1.961277 CCAGTGAGGTGACAACGCC 60.961 63.158 0.00 0.00 46.05 5.68
224 225 1.961277 CAGTGAGGTGACAACGCCC 60.961 63.158 0.00 0.00 46.81 6.13
225 226 2.668550 GTGAGGTGACAACGCCCC 60.669 66.667 0.00 0.00 46.81 5.80
226 227 3.948719 TGAGGTGACAACGCCCCC 61.949 66.667 0.00 0.00 46.81 5.40
248 249 2.047655 CCCTTTGCGCACGGAGTA 60.048 61.111 22.83 0.00 41.61 2.59
249 250 2.388232 CCCTTTGCGCACGGAGTAC 61.388 63.158 22.83 0.00 41.61 2.73
250 251 2.388232 CCTTTGCGCACGGAGTACC 61.388 63.158 11.12 0.00 41.61 3.34
251 252 1.666553 CTTTGCGCACGGAGTACCA 60.667 57.895 11.12 0.00 41.61 3.25
252 253 1.897398 CTTTGCGCACGGAGTACCAC 61.897 60.000 11.12 0.00 41.61 4.16
253 254 4.710695 TGCGCACGGAGTACCACG 62.711 66.667 5.66 5.38 41.61 4.94
254 255 4.409218 GCGCACGGAGTACCACGA 62.409 66.667 12.97 0.00 41.61 4.35
255 256 2.202440 CGCACGGAGTACCACGAG 60.202 66.667 12.97 6.80 41.61 4.18
256 257 2.683859 CGCACGGAGTACCACGAGA 61.684 63.158 12.97 0.00 41.61 4.04
257 258 1.582968 GCACGGAGTACCACGAGAA 59.417 57.895 12.97 0.00 41.61 2.87
258 259 0.456312 GCACGGAGTACCACGAGAAG 60.456 60.000 12.97 2.62 41.61 2.85
259 260 1.162698 CACGGAGTACCACGAGAAGA 58.837 55.000 12.97 0.00 41.61 2.87
260 261 1.130749 CACGGAGTACCACGAGAAGAG 59.869 57.143 12.97 0.00 41.61 2.85
261 262 0.733729 CGGAGTACCACGAGAAGAGG 59.266 60.000 0.88 0.00 36.60 3.69
262 263 0.456628 GGAGTACCACGAGAAGAGGC 59.543 60.000 0.00 0.00 33.55 4.70
263 264 1.465794 GAGTACCACGAGAAGAGGCT 58.534 55.000 0.00 0.00 33.55 4.58
264 265 1.402613 GAGTACCACGAGAAGAGGCTC 59.597 57.143 6.34 6.34 33.55 4.70
265 266 1.004979 AGTACCACGAGAAGAGGCTCT 59.995 52.381 12.24 12.24 33.55 4.09
266 267 1.402613 GTACCACGAGAAGAGGCTCTC 59.597 57.143 19.03 11.34 38.82 3.20
267 268 0.251386 ACCACGAGAAGAGGCTCTCA 60.251 55.000 19.03 0.00 41.75 3.27
268 269 0.172352 CCACGAGAAGAGGCTCTCAC 59.828 60.000 19.03 14.76 41.75 3.51
269 270 0.179176 CACGAGAAGAGGCTCTCACG 60.179 60.000 19.03 22.85 41.75 4.35
270 271 1.309499 ACGAGAAGAGGCTCTCACGG 61.309 60.000 27.66 19.49 41.75 4.94
271 272 1.813192 GAGAAGAGGCTCTCACGGG 59.187 63.158 19.03 0.00 41.37 5.28
272 273 2.185608 GAAGAGGCTCTCACGGGC 59.814 66.667 19.03 0.00 32.06 6.13
273 274 3.708220 GAAGAGGCTCTCACGGGCG 62.708 68.421 19.03 0.00 32.06 6.13
275 276 4.803426 GAGGCTCTCACGGGCGTG 62.803 72.222 7.40 0.00 46.64 5.34
296 297 4.467084 GAAGCCGCCCCATGACGA 62.467 66.667 0.00 0.00 0.00 4.20
297 298 3.757248 GAAGCCGCCCCATGACGAT 62.757 63.158 0.00 0.00 0.00 3.73
298 299 4.552365 AGCCGCCCCATGACGATG 62.552 66.667 0.00 0.00 0.00 3.84
342 343 2.430367 GGCACGGACAACCTCCTT 59.570 61.111 0.00 0.00 36.80 3.36
343 344 1.966451 GGCACGGACAACCTCCTTG 60.966 63.158 0.00 0.00 40.64 3.61
344 345 3.655481 CACGGACAACCTCCTTGC 58.345 61.111 0.00 0.00 36.80 4.01
345 346 1.966451 CACGGACAACCTCCTTGCC 60.966 63.158 0.00 0.00 36.80 4.52
346 347 2.359975 CGGACAACCTCCTTGCCC 60.360 66.667 0.00 0.00 36.80 5.36
347 348 2.359975 GGACAACCTCCTTGCCCG 60.360 66.667 0.00 0.00 35.89 6.13
348 349 2.359975 GACAACCTCCTTGCCCGG 60.360 66.667 0.00 0.00 32.41 5.73
349 350 3.920093 GACAACCTCCTTGCCCGGG 62.920 68.421 19.09 19.09 32.41 5.73
350 351 3.646715 CAACCTCCTTGCCCGGGA 61.647 66.667 29.31 6.60 0.00 5.14
351 352 2.856988 AACCTCCTTGCCCGGGAA 60.857 61.111 29.31 13.01 31.92 3.97
352 353 2.907179 AACCTCCTTGCCCGGGAAG 61.907 63.158 29.31 23.30 31.92 3.46
353 354 4.803908 CCTCCTTGCCCGGGAAGC 62.804 72.222 29.31 9.98 31.92 3.86
354 355 4.803908 CTCCTTGCCCGGGAAGCC 62.804 72.222 29.31 6.82 31.92 4.35
366 367 3.151048 GGAAGCCCCTAGGAGGTAG 57.849 63.158 11.48 0.00 31.93 3.18
368 369 0.265254 GAAGCCCCTAGGAGGTAGGT 59.735 60.000 11.48 0.00 46.66 3.08
369 370 1.502474 GAAGCCCCTAGGAGGTAGGTA 59.498 57.143 11.48 0.00 46.66 3.08
370 371 0.859064 AGCCCCTAGGAGGTAGGTAC 59.141 60.000 11.48 0.00 46.66 3.34
371 372 0.859064 GCCCCTAGGAGGTAGGTACT 59.141 60.000 11.48 0.00 46.66 2.73
372 373 1.203038 GCCCCTAGGAGGTAGGTACTC 60.203 61.905 11.48 0.00 46.66 2.59
380 381 3.737032 GAGGTAGGTACTCCAGCATTC 57.263 52.381 0.00 0.00 41.75 2.67
381 382 3.301274 GAGGTAGGTACTCCAGCATTCT 58.699 50.000 0.00 0.00 41.75 2.40
382 383 3.707102 GAGGTAGGTACTCCAGCATTCTT 59.293 47.826 0.00 0.00 41.75 2.52
383 384 4.104831 AGGTAGGTACTCCAGCATTCTTT 58.895 43.478 0.00 0.00 41.75 2.52
384 385 5.278061 AGGTAGGTACTCCAGCATTCTTTA 58.722 41.667 0.00 0.00 41.75 1.85
385 386 5.905913 AGGTAGGTACTCCAGCATTCTTTAT 59.094 40.000 0.00 0.00 41.75 1.40
386 387 7.073854 AGGTAGGTACTCCAGCATTCTTTATA 58.926 38.462 0.00 0.00 41.75 0.98
387 388 7.233757 AGGTAGGTACTCCAGCATTCTTTATAG 59.766 40.741 0.00 0.00 41.75 1.31
388 389 6.426646 AGGTACTCCAGCATTCTTTATAGG 57.573 41.667 0.00 0.00 35.89 2.57
389 390 5.308237 AGGTACTCCAGCATTCTTTATAGGG 59.692 44.000 0.00 0.00 35.89 3.53
390 391 4.713792 ACTCCAGCATTCTTTATAGGGG 57.286 45.455 0.00 0.00 0.00 4.79
391 392 4.047883 ACTCCAGCATTCTTTATAGGGGT 58.952 43.478 0.00 0.00 0.00 4.95
392 393 5.224441 ACTCCAGCATTCTTTATAGGGGTA 58.776 41.667 0.00 0.00 0.00 3.69
393 394 5.852250 ACTCCAGCATTCTTTATAGGGGTAT 59.148 40.000 0.00 0.00 0.00 2.73
394 395 7.023120 ACTCCAGCATTCTTTATAGGGGTATA 58.977 38.462 0.00 0.00 0.00 1.47
395 396 7.516209 ACTCCAGCATTCTTTATAGGGGTATAA 59.484 37.037 0.00 0.00 0.00 0.98
396 397 8.463055 TCCAGCATTCTTTATAGGGGTATAAT 57.537 34.615 0.00 0.00 0.00 1.28
397 398 8.328758 TCCAGCATTCTTTATAGGGGTATAATG 58.671 37.037 0.00 0.00 0.00 1.90
398 399 8.109634 CCAGCATTCTTTATAGGGGTATAATGT 58.890 37.037 0.00 0.00 0.00 2.71
399 400 9.520515 CAGCATTCTTTATAGGGGTATAATGTT 57.479 33.333 0.00 0.00 0.00 2.71
410 411 9.945633 ATAGGGGTATAATGTTATGGTTTGTTT 57.054 29.630 0.00 0.00 0.00 2.83
411 412 8.301252 AGGGGTATAATGTTATGGTTTGTTTC 57.699 34.615 0.00 0.00 0.00 2.78
412 413 7.896496 AGGGGTATAATGTTATGGTTTGTTTCA 59.104 33.333 0.00 0.00 0.00 2.69
413 414 8.532819 GGGGTATAATGTTATGGTTTGTTTCAA 58.467 33.333 0.00 0.00 0.00 2.69
414 415 9.361315 GGGTATAATGTTATGGTTTGTTTCAAC 57.639 33.333 0.00 0.00 0.00 3.18
415 416 9.915629 GGTATAATGTTATGGTTTGTTTCAACA 57.084 29.630 0.00 0.00 37.08 3.33
417 418 6.843069 AATGTTATGGTTTGTTTCAACAGC 57.157 33.333 0.00 0.00 40.50 4.40
418 419 5.330455 TGTTATGGTTTGTTTCAACAGCA 57.670 34.783 0.00 0.00 40.50 4.41
419 420 5.911752 TGTTATGGTTTGTTTCAACAGCAT 58.088 33.333 0.00 0.00 40.50 3.79
420 421 5.982516 TGTTATGGTTTGTTTCAACAGCATC 59.017 36.000 10.15 0.00 40.50 3.91
421 422 4.669206 ATGGTTTGTTTCAACAGCATCA 57.331 36.364 0.00 0.00 40.50 3.07
422 423 4.669206 TGGTTTGTTTCAACAGCATCAT 57.331 36.364 0.00 0.00 40.50 2.45
423 424 5.021033 TGGTTTGTTTCAACAGCATCATT 57.979 34.783 0.00 0.00 40.50 2.57
424 425 5.426504 TGGTTTGTTTCAACAGCATCATTT 58.573 33.333 0.00 0.00 40.50 2.32
425 426 5.293814 TGGTTTGTTTCAACAGCATCATTTG 59.706 36.000 0.00 0.00 40.50 2.32
426 427 5.277442 GGTTTGTTTCAACAGCATCATTTGG 60.277 40.000 0.00 0.00 40.50 3.28
427 428 4.933505 TGTTTCAACAGCATCATTTGGA 57.066 36.364 0.00 0.00 34.30 3.53
428 429 4.873817 TGTTTCAACAGCATCATTTGGAG 58.126 39.130 0.00 0.00 34.30 3.86
429 430 3.581024 TTCAACAGCATCATTTGGAGC 57.419 42.857 0.00 0.00 0.00 4.70
430 431 2.516906 TCAACAGCATCATTTGGAGCA 58.483 42.857 0.00 0.00 0.00 4.26
431 432 2.490509 TCAACAGCATCATTTGGAGCAG 59.509 45.455 0.00 0.00 0.00 4.24
432 433 2.490509 CAACAGCATCATTTGGAGCAGA 59.509 45.455 0.00 0.00 0.00 4.26
433 434 2.366533 ACAGCATCATTTGGAGCAGAG 58.633 47.619 0.00 0.00 0.00 3.35
434 435 2.026542 ACAGCATCATTTGGAGCAGAGA 60.027 45.455 0.00 0.00 0.00 3.10
435 436 3.014623 CAGCATCATTTGGAGCAGAGAA 58.985 45.455 0.00 0.00 0.00 2.87
436 437 3.442625 CAGCATCATTTGGAGCAGAGAAA 59.557 43.478 0.00 0.00 0.00 2.52
437 438 4.082408 CAGCATCATTTGGAGCAGAGAAAA 60.082 41.667 0.00 0.00 0.00 2.29
438 439 4.158025 AGCATCATTTGGAGCAGAGAAAAG 59.842 41.667 0.00 0.00 0.00 2.27
439 440 4.157289 GCATCATTTGGAGCAGAGAAAAGA 59.843 41.667 0.00 0.00 0.00 2.52
440 441 5.336213 GCATCATTTGGAGCAGAGAAAAGAA 60.336 40.000 0.00 0.00 0.00 2.52
441 442 6.627508 GCATCATTTGGAGCAGAGAAAAGAAT 60.628 38.462 0.00 0.00 0.00 2.40
442 443 7.415989 GCATCATTTGGAGCAGAGAAAAGAATA 60.416 37.037 0.00 0.00 0.00 1.75
443 444 8.464404 CATCATTTGGAGCAGAGAAAAGAATAA 58.536 33.333 0.00 0.00 0.00 1.40
444 445 8.408043 TCATTTGGAGCAGAGAAAAGAATAAA 57.592 30.769 0.00 0.00 0.00 1.40
445 446 8.859090 TCATTTGGAGCAGAGAAAAGAATAAAA 58.141 29.630 0.00 0.00 0.00 1.52
446 447 9.480053 CATTTGGAGCAGAGAAAAGAATAAAAA 57.520 29.630 0.00 0.00 0.00 1.94
449 450 9.480053 TTGGAGCAGAGAAAAGAATAAAAATTG 57.520 29.630 0.00 0.00 0.00 2.32
450 451 8.641541 TGGAGCAGAGAAAAGAATAAAAATTGT 58.358 29.630 0.00 0.00 0.00 2.71
454 455 9.358872 GCAGAGAAAAGAATAAAAATTGTAGGG 57.641 33.333 0.00 0.00 0.00 3.53
455 456 9.358872 CAGAGAAAAGAATAAAAATTGTAGGGC 57.641 33.333 0.00 0.00 0.00 5.19
456 457 9.088987 AGAGAAAAGAATAAAAATTGTAGGGCA 57.911 29.630 0.00 0.00 0.00 5.36
457 458 9.875691 GAGAAAAGAATAAAAATTGTAGGGCAT 57.124 29.630 0.00 0.00 0.00 4.40
458 459 9.657419 AGAAAAGAATAAAAATTGTAGGGCATG 57.343 29.630 0.00 0.00 0.00 4.06
459 460 9.435688 GAAAAGAATAAAAATTGTAGGGCATGT 57.564 29.630 0.00 0.00 0.00 3.21
460 461 8.776376 AAAGAATAAAAATTGTAGGGCATGTG 57.224 30.769 0.00 0.00 0.00 3.21
461 462 7.716799 AGAATAAAAATTGTAGGGCATGTGA 57.283 32.000 0.00 0.00 0.00 3.58
462 463 8.133024 AGAATAAAAATTGTAGGGCATGTGAA 57.867 30.769 0.00 0.00 0.00 3.18
463 464 8.592809 AGAATAAAAATTGTAGGGCATGTGAAA 58.407 29.630 0.00 0.00 0.00 2.69
464 465 9.213799 GAATAAAAATTGTAGGGCATGTGAAAA 57.786 29.630 0.00 0.00 0.00 2.29
465 466 9.566432 AATAAAAATTGTAGGGCATGTGAAAAA 57.434 25.926 0.00 0.00 0.00 1.94
466 467 7.495135 AAAAATTGTAGGGCATGTGAAAAAG 57.505 32.000 0.00 0.00 0.00 2.27
467 468 3.658757 TTGTAGGGCATGTGAAAAAGC 57.341 42.857 0.00 0.00 0.00 3.51
468 469 2.591923 TGTAGGGCATGTGAAAAAGCA 58.408 42.857 0.00 0.00 0.00 3.91
469 470 2.961741 TGTAGGGCATGTGAAAAAGCAA 59.038 40.909 0.00 0.00 0.00 3.91
470 471 3.386078 TGTAGGGCATGTGAAAAAGCAAA 59.614 39.130 0.00 0.00 0.00 3.68
471 472 2.837498 AGGGCATGTGAAAAAGCAAAC 58.163 42.857 0.00 0.00 0.00 2.93
472 473 2.170187 AGGGCATGTGAAAAAGCAAACA 59.830 40.909 0.00 0.00 0.00 2.83
473 474 2.287644 GGGCATGTGAAAAAGCAAACAC 59.712 45.455 0.00 0.00 0.00 3.32
474 475 3.197265 GGCATGTGAAAAAGCAAACACT 58.803 40.909 0.00 0.00 34.81 3.55
475 476 3.622612 GGCATGTGAAAAAGCAAACACTT 59.377 39.130 0.00 0.00 34.81 3.16
476 477 4.260334 GGCATGTGAAAAAGCAAACACTTC 60.260 41.667 0.00 0.00 34.81 3.01
477 478 4.567959 GCATGTGAAAAAGCAAACACTTCT 59.432 37.500 0.00 0.00 34.81 2.85
478 479 5.276536 GCATGTGAAAAAGCAAACACTTCTC 60.277 40.000 0.00 0.00 34.81 2.87
479 480 4.743493 TGTGAAAAAGCAAACACTTCTCC 58.257 39.130 0.00 0.00 34.81 3.71
480 481 4.112634 GTGAAAAAGCAAACACTTCTCCC 58.887 43.478 0.00 0.00 0.00 4.30
481 482 3.181491 TGAAAAAGCAAACACTTCTCCCG 60.181 43.478 0.00 0.00 0.00 5.14
482 483 2.052782 AAAGCAAACACTTCTCCCGT 57.947 45.000 0.00 0.00 0.00 5.28
483 484 2.922740 AAGCAAACACTTCTCCCGTA 57.077 45.000 0.00 0.00 0.00 4.02
484 485 2.165319 AGCAAACACTTCTCCCGTAC 57.835 50.000 0.00 0.00 0.00 3.67
485 486 1.154197 GCAAACACTTCTCCCGTACC 58.846 55.000 0.00 0.00 0.00 3.34
486 487 1.541670 GCAAACACTTCTCCCGTACCA 60.542 52.381 0.00 0.00 0.00 3.25
487 488 2.841215 CAAACACTTCTCCCGTACCAA 58.159 47.619 0.00 0.00 0.00 3.67
488 489 3.207778 CAAACACTTCTCCCGTACCAAA 58.792 45.455 0.00 0.00 0.00 3.28
489 490 3.564053 AACACTTCTCCCGTACCAAAA 57.436 42.857 0.00 0.00 0.00 2.44
490 491 2.842457 ACACTTCTCCCGTACCAAAAC 58.158 47.619 0.00 0.00 0.00 2.43
491 492 2.148768 CACTTCTCCCGTACCAAAACC 58.851 52.381 0.00 0.00 0.00 3.27
492 493 1.072806 ACTTCTCCCGTACCAAAACCC 59.927 52.381 0.00 0.00 0.00 4.11
493 494 1.350019 CTTCTCCCGTACCAAAACCCT 59.650 52.381 0.00 0.00 0.00 4.34
494 495 1.437397 TCTCCCGTACCAAAACCCTT 58.563 50.000 0.00 0.00 0.00 3.95
495 496 1.348696 TCTCCCGTACCAAAACCCTTC 59.651 52.381 0.00 0.00 0.00 3.46
496 497 1.350019 CTCCCGTACCAAAACCCTTCT 59.650 52.381 0.00 0.00 0.00 2.85
497 498 1.348696 TCCCGTACCAAAACCCTTCTC 59.651 52.381 0.00 0.00 0.00 2.87
498 499 1.350019 CCCGTACCAAAACCCTTCTCT 59.650 52.381 0.00 0.00 0.00 3.10
499 500 2.614734 CCCGTACCAAAACCCTTCTCTC 60.615 54.545 0.00 0.00 0.00 3.20
500 501 2.302157 CCGTACCAAAACCCTTCTCTCT 59.698 50.000 0.00 0.00 0.00 3.10
501 502 3.244457 CCGTACCAAAACCCTTCTCTCTT 60.244 47.826 0.00 0.00 0.00 2.85
502 503 3.995048 CGTACCAAAACCCTTCTCTCTTC 59.005 47.826 0.00 0.00 0.00 2.87
503 504 4.262506 CGTACCAAAACCCTTCTCTCTTCT 60.263 45.833 0.00 0.00 0.00 2.85
504 505 5.047519 CGTACCAAAACCCTTCTCTCTTCTA 60.048 44.000 0.00 0.00 0.00 2.10
505 506 5.230323 ACCAAAACCCTTCTCTCTTCTAC 57.770 43.478 0.00 0.00 0.00 2.59
506 507 4.041815 ACCAAAACCCTTCTCTCTTCTACC 59.958 45.833 0.00 0.00 0.00 3.18
507 508 4.565861 CCAAAACCCTTCTCTCTTCTACCC 60.566 50.000 0.00 0.00 0.00 3.69
508 509 3.856747 AACCCTTCTCTCTTCTACCCT 57.143 47.619 0.00 0.00 0.00 4.34
509 510 4.969136 AACCCTTCTCTCTTCTACCCTA 57.031 45.455 0.00 0.00 0.00 3.53
510 511 4.969136 ACCCTTCTCTCTTCTACCCTAA 57.031 45.455 0.00 0.00 0.00 2.69
511 512 5.490995 ACCCTTCTCTCTTCTACCCTAAT 57.509 43.478 0.00 0.00 0.00 1.73
512 513 5.460416 ACCCTTCTCTCTTCTACCCTAATC 58.540 45.833 0.00 0.00 0.00 1.75
513 514 5.043281 ACCCTTCTCTCTTCTACCCTAATCA 60.043 44.000 0.00 0.00 0.00 2.57
514 515 6.081356 CCCTTCTCTCTTCTACCCTAATCAT 58.919 44.000 0.00 0.00 0.00 2.45
515 516 6.556874 CCCTTCTCTCTTCTACCCTAATCATT 59.443 42.308 0.00 0.00 0.00 2.57
516 517 7.071824 CCCTTCTCTCTTCTACCCTAATCATTT 59.928 40.741 0.00 0.00 0.00 2.32
517 518 8.490311 CCTTCTCTCTTCTACCCTAATCATTTT 58.510 37.037 0.00 0.00 0.00 1.82
518 519 9.898152 CTTCTCTCTTCTACCCTAATCATTTTT 57.102 33.333 0.00 0.00 0.00 1.94
523 524 9.267084 CTCTTCTACCCTAATCATTTTTAGAGC 57.733 37.037 0.00 0.00 32.02 4.09
524 525 8.768397 TCTTCTACCCTAATCATTTTTAGAGCA 58.232 33.333 0.00 0.00 32.02 4.26
525 526 9.566432 CTTCTACCCTAATCATTTTTAGAGCAT 57.434 33.333 0.00 0.00 32.02 3.79
526 527 9.561069 TTCTACCCTAATCATTTTTAGAGCATC 57.439 33.333 0.00 0.00 32.02 3.91
527 528 8.713971 TCTACCCTAATCATTTTTAGAGCATCA 58.286 33.333 0.00 0.00 37.82 3.07
528 529 9.342308 CTACCCTAATCATTTTTAGAGCATCAA 57.658 33.333 0.00 0.00 37.82 2.57
529 530 8.000780 ACCCTAATCATTTTTAGAGCATCAAC 57.999 34.615 0.00 0.00 37.82 3.18
530 531 7.068716 ACCCTAATCATTTTTAGAGCATCAACC 59.931 37.037 0.00 0.00 37.82 3.77
531 532 7.286316 CCCTAATCATTTTTAGAGCATCAACCT 59.714 37.037 0.00 0.00 37.82 3.50
532 533 8.348507 CCTAATCATTTTTAGAGCATCAACCTC 58.651 37.037 0.00 0.00 37.82 3.85
533 534 7.951347 AATCATTTTTAGAGCATCAACCTCT 57.049 32.000 0.00 0.00 42.11 3.69
534 535 7.951347 ATCATTTTTAGAGCATCAACCTCTT 57.049 32.000 0.00 0.00 40.08 2.85
535 536 7.383102 TCATTTTTAGAGCATCAACCTCTTC 57.617 36.000 0.00 0.00 40.08 2.87
536 537 6.942005 TCATTTTTAGAGCATCAACCTCTTCA 59.058 34.615 0.00 0.00 40.08 3.02
537 538 7.613022 TCATTTTTAGAGCATCAACCTCTTCAT 59.387 33.333 0.00 0.00 40.08 2.57
538 539 6.992063 TTTTAGAGCATCAACCTCTTCATC 57.008 37.500 0.00 0.00 40.08 2.92
539 540 5.682234 TTAGAGCATCAACCTCTTCATCA 57.318 39.130 0.00 0.00 40.08 3.07
540 541 4.774660 AGAGCATCAACCTCTTCATCAT 57.225 40.909 0.00 0.00 36.28 2.45
541 542 4.706035 AGAGCATCAACCTCTTCATCATC 58.294 43.478 0.00 0.00 36.28 2.92
542 543 4.163649 AGAGCATCAACCTCTTCATCATCA 59.836 41.667 0.00 0.00 36.28 3.07
543 544 5.050126 AGCATCAACCTCTTCATCATCAT 57.950 39.130 0.00 0.00 0.00 2.45
544 545 5.446860 AGCATCAACCTCTTCATCATCATT 58.553 37.500 0.00 0.00 0.00 2.57
545 546 5.892119 AGCATCAACCTCTTCATCATCATTT 59.108 36.000 0.00 0.00 0.00 2.32
546 547 6.039493 AGCATCAACCTCTTCATCATCATTTC 59.961 38.462 0.00 0.00 0.00 2.17
547 548 6.183360 GCATCAACCTCTTCATCATCATTTCA 60.183 38.462 0.00 0.00 0.00 2.69
548 549 7.629866 GCATCAACCTCTTCATCATCATTTCAA 60.630 37.037 0.00 0.00 0.00 2.69
549 550 7.387119 TCAACCTCTTCATCATCATTTCAAG 57.613 36.000 0.00 0.00 0.00 3.02
550 551 7.170277 TCAACCTCTTCATCATCATTTCAAGA 58.830 34.615 0.00 0.00 0.00 3.02
551 552 7.832685 TCAACCTCTTCATCATCATTTCAAGAT 59.167 33.333 0.00 0.00 0.00 2.40
552 553 9.117183 CAACCTCTTCATCATCATTTCAAGATA 57.883 33.333 0.00 0.00 0.00 1.98
553 554 8.674263 ACCTCTTCATCATCATTTCAAGATAC 57.326 34.615 0.00 0.00 0.00 2.24
554 555 8.492782 ACCTCTTCATCATCATTTCAAGATACT 58.507 33.333 0.00 0.00 0.00 2.12
555 556 8.991026 CCTCTTCATCATCATTTCAAGATACTC 58.009 37.037 0.00 0.00 0.00 2.59
556 557 9.767228 CTCTTCATCATCATTTCAAGATACTCT 57.233 33.333 0.00 0.00 0.00 3.24
602 605 2.647299 TCCAGGTGTCACCCATTGTAAT 59.353 45.455 18.80 0.00 39.75 1.89
615 618 7.336679 TCACCCATTGTAATCTTAATCAGTGTG 59.663 37.037 0.00 0.00 0.00 3.82
777 782 2.369394 GCTCCTCGGAAATGAAATGGT 58.631 47.619 0.00 0.00 0.00 3.55
1601 1626 1.525718 TACGTCCCGCAGCAGTAACA 61.526 55.000 0.00 0.00 0.00 2.41
1705 1731 6.197096 CACCGCTGAATAATTTAAGATGTTGC 59.803 38.462 0.00 0.00 0.00 4.17
1709 1735 7.436080 CGCTGAATAATTTAAGATGTTGCCATT 59.564 33.333 0.00 0.00 0.00 3.16
1734 1760 2.104669 AGGGGCCTCCTCTATGTTAC 57.895 55.000 0.00 0.00 44.06 2.50
1757 1783 4.035278 AGTGATTCGATCCGAGAAGAAC 57.965 45.455 0.00 0.00 37.14 3.01
1897 1927 9.301153 GTGAAATGGTTTGTTGTATATTCCATC 57.699 33.333 0.00 0.00 33.81 3.51
1912 1942 1.968493 TCCATCTAACTATGACCCCGC 59.032 52.381 0.00 0.00 0.00 6.13
1966 1996 6.959639 AATATTACAACAACTATGGGCCAG 57.040 37.500 13.78 0.82 0.00 4.85
2013 2043 8.978564 TTTATGTGCATGTTTAATTGGTACAG 57.021 30.769 0.00 0.00 42.39 2.74
2053 2083 9.613428 TTCGGATAATTCAGATACATGTTTCTT 57.387 29.630 15.23 5.03 0.00 2.52
2069 2099 8.742777 ACATGTTTCTTTTATACAGATGCATGT 58.257 29.630 2.46 0.00 39.08 3.21
2070 2100 9.577110 CATGTTTCTTTTATACAGATGCATGTT 57.423 29.630 2.46 0.00 33.08 2.71
2072 2102 9.979578 TGTTTCTTTTATACAGATGCATGTTTT 57.020 25.926 2.46 0.00 34.56 2.43
2122 2152 4.477249 AGTGTATACTACCAAGGGCGTAT 58.523 43.478 4.17 7.42 34.74 3.06
2124 2154 3.503363 TGTATACTACCAAGGGCGTATCG 59.497 47.826 4.17 0.00 0.00 2.92
2298 2342 7.488322 CAAACTCCTGACATTTTCTTTGGTTA 58.512 34.615 0.00 0.00 0.00 2.85
2336 2380 8.918202 TTTGCTTTATTCTCTTTGAGGTTCTA 57.082 30.769 0.00 0.00 0.00 2.10
2369 2414 5.170748 GGCACTTTGGTTAAAGATGGATTG 58.829 41.667 6.77 0.00 44.87 2.67
2370 2415 5.047377 GGCACTTTGGTTAAAGATGGATTGA 60.047 40.000 6.77 0.00 44.87 2.57
2374 2419 9.793252 CACTTTGGTTAAAGATGGATTGATTAG 57.207 33.333 6.77 0.00 44.87 1.73
2375 2420 9.533831 ACTTTGGTTAAAGATGGATTGATTAGT 57.466 29.630 6.77 0.00 44.87 2.24
2383 2428 8.985315 AAAGATGGATTGATTAGTTATGAGCA 57.015 30.769 0.00 0.00 0.00 4.26
2384 2429 8.985315 AAGATGGATTGATTAGTTATGAGCAA 57.015 30.769 0.00 0.00 0.00 3.91
2389 2434 7.280876 TGGATTGATTAGTTATGAGCAACTGAC 59.719 37.037 0.00 0.00 39.12 3.51
2401 2446 1.148310 CAACTGACCAGCTACCAACG 58.852 55.000 0.00 0.00 0.00 4.10
2563 2886 1.227853 ACTCGGCACCTGACCAAAC 60.228 57.895 0.00 0.00 0.00 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.497278 CAACCTCGTTCATGGCGTG 59.503 57.895 0.00 0.00 0.00 5.34
1 2 2.325082 GCAACCTCGTTCATGGCGT 61.325 57.895 9.65 0.00 0.00 5.68
2 3 2.480555 GCAACCTCGTTCATGGCG 59.519 61.111 0.00 0.00 0.00 5.69
3 4 2.480555 CGCAACCTCGTTCATGGC 59.519 61.111 0.00 0.00 0.00 4.40
6 7 2.746277 GGGCGCAACCTCGTTCAT 60.746 61.111 10.83 0.00 39.10 2.57
24 25 4.814294 CTCCACCAGGGTACGCGC 62.814 72.222 5.73 0.00 38.11 6.86
25 26 3.066190 TCTCCACCAGGGTACGCG 61.066 66.667 3.53 3.53 38.11 6.01
26 27 2.227089 CTGTCTCCACCAGGGTACGC 62.227 65.000 0.77 0.77 38.11 4.42
27 28 1.890894 CTGTCTCCACCAGGGTACG 59.109 63.158 0.00 0.00 38.11 3.67
28 29 1.597461 GCTGTCTCCACCAGGGTAC 59.403 63.158 0.00 0.00 38.11 3.34
29 30 1.982395 CGCTGTCTCCACCAGGGTA 60.982 63.158 0.00 0.00 37.90 3.69
30 31 3.314331 CGCTGTCTCCACCAGGGT 61.314 66.667 0.00 0.00 37.90 4.34
31 32 2.997315 TCGCTGTCTCCACCAGGG 60.997 66.667 0.00 0.00 42.43 4.45
32 33 2.575993 CTCGCTGTCTCCACCAGG 59.424 66.667 0.00 0.00 0.00 4.45
33 34 2.125753 GCTCGCTGTCTCCACCAG 60.126 66.667 0.00 0.00 0.00 4.00
34 35 2.917227 TGCTCGCTGTCTCCACCA 60.917 61.111 0.00 0.00 0.00 4.17
35 36 2.125753 CTGCTCGCTGTCTCCACC 60.126 66.667 0.00 0.00 0.00 4.61
36 37 1.445238 GACTGCTCGCTGTCTCCAC 60.445 63.158 18.01 0.00 40.32 4.02
37 38 1.903404 TGACTGCTCGCTGTCTCCA 60.903 57.895 23.21 7.36 42.74 3.86
38 39 1.445238 GTGACTGCTCGCTGTCTCC 60.445 63.158 23.21 13.64 42.74 3.71
39 40 0.732196 CTGTGACTGCTCGCTGTCTC 60.732 60.000 23.21 20.56 42.74 3.36
40 41 1.288439 CTGTGACTGCTCGCTGTCT 59.712 57.895 23.21 0.00 42.74 3.41
41 42 1.735920 CCTGTGACTGCTCGCTGTC 60.736 63.158 18.33 18.33 42.65 3.51
42 43 2.341543 CCTGTGACTGCTCGCTGT 59.658 61.111 0.88 0.88 0.00 4.40
43 44 3.117171 GCCTGTGACTGCTCGCTG 61.117 66.667 0.00 0.00 0.00 5.18
44 45 3.586461 CTGCCTGTGACTGCTCGCT 62.586 63.158 0.00 0.00 0.00 4.93
45 46 3.117171 CTGCCTGTGACTGCTCGC 61.117 66.667 0.00 0.00 0.00 5.03
46 47 2.433838 CCTGCCTGTGACTGCTCG 60.434 66.667 0.00 0.00 0.00 5.03
47 48 1.670406 CACCTGCCTGTGACTGCTC 60.670 63.158 0.00 0.00 38.55 4.26
48 49 2.429058 CACCTGCCTGTGACTGCT 59.571 61.111 0.00 0.00 38.55 4.24
49 50 3.360340 GCACCTGCCTGTGACTGC 61.360 66.667 6.87 0.00 38.55 4.40
59 60 2.986306 GCTCACACATGGCACCTGC 61.986 63.158 0.00 0.00 41.14 4.85
60 61 1.303074 AGCTCACACATGGCACCTG 60.303 57.895 0.00 0.00 0.00 4.00
61 62 1.002868 GAGCTCACACATGGCACCT 60.003 57.895 9.40 0.00 0.00 4.00
62 63 2.393768 CGAGCTCACACATGGCACC 61.394 63.158 15.40 0.00 0.00 5.01
63 64 3.031964 GCGAGCTCACACATGGCAC 62.032 63.158 15.40 0.00 0.00 5.01
64 65 2.743538 GCGAGCTCACACATGGCA 60.744 61.111 15.40 0.00 0.00 4.92
65 66 3.857854 CGCGAGCTCACACATGGC 61.858 66.667 15.40 5.98 0.00 4.40
66 67 3.190849 CCGCGAGCTCACACATGG 61.191 66.667 15.40 1.59 0.00 3.66
67 68 3.190849 CCCGCGAGCTCACACATG 61.191 66.667 15.40 0.00 0.00 3.21
87 88 3.136123 CATCCAGGGCTTGCGTGG 61.136 66.667 6.35 6.35 0.00 4.94
88 89 2.360350 ACATCCAGGGCTTGCGTG 60.360 61.111 0.00 0.00 0.00 5.34
89 90 2.360350 CACATCCAGGGCTTGCGT 60.360 61.111 0.00 0.00 0.00 5.24
90 91 3.136123 CCACATCCAGGGCTTGCG 61.136 66.667 0.00 0.00 0.00 4.85
91 92 3.455469 GCCACATCCAGGGCTTGC 61.455 66.667 0.00 0.00 46.74 4.01
96 97 4.838152 CGGTCGCCACATCCAGGG 62.838 72.222 0.00 0.00 0.00 4.45
97 98 3.309436 TTCGGTCGCCACATCCAGG 62.309 63.158 0.00 0.00 0.00 4.45
98 99 2.100631 GTTCGGTCGCCACATCCAG 61.101 63.158 0.00 0.00 0.00 3.86
99 100 2.047655 GTTCGGTCGCCACATCCA 60.048 61.111 0.00 0.00 0.00 3.41
100 101 2.818274 GGTTCGGTCGCCACATCC 60.818 66.667 0.00 0.00 0.00 3.51
101 102 2.047655 TGGTTCGGTCGCCACATC 60.048 61.111 0.00 0.00 0.00 3.06
102 103 2.047274 CTGGTTCGGTCGCCACAT 60.047 61.111 0.00 0.00 0.00 3.21
103 104 4.980805 GCTGGTTCGGTCGCCACA 62.981 66.667 0.00 0.00 0.00 4.17
122 123 4.657824 CCACCTATACCCGCGCCG 62.658 72.222 0.00 0.00 0.00 6.46
123 124 4.309950 CCCACCTATACCCGCGCC 62.310 72.222 0.00 0.00 0.00 6.53
124 125 4.982749 GCCCACCTATACCCGCGC 62.983 72.222 0.00 0.00 0.00 6.86
125 126 4.309950 GGCCCACCTATACCCGCG 62.310 72.222 0.00 0.00 0.00 6.46
126 127 3.949980 GGGCCCACCTATACCCGC 61.950 72.222 19.95 0.00 35.85 6.13
127 128 2.446994 TGGGCCCACCTATACCCG 60.447 66.667 24.45 0.00 46.02 5.28
128 129 2.814835 CGTGGGCCCACCTATACCC 61.815 68.421 42.54 20.78 43.49 3.69
129 130 1.755393 CTCGTGGGCCCACCTATACC 61.755 65.000 42.54 21.53 43.49 2.73
130 131 0.757935 TCTCGTGGGCCCACCTATAC 60.758 60.000 42.54 22.27 43.49 1.47
131 132 0.031917 TTCTCGTGGGCCCACCTATA 60.032 55.000 42.54 26.53 43.49 1.31
132 133 1.306654 TTCTCGTGGGCCCACCTAT 60.307 57.895 42.54 0.00 43.49 2.57
133 134 2.120940 TTCTCGTGGGCCCACCTA 59.879 61.111 42.54 31.19 43.49 3.08
134 135 3.637273 GTTCTCGTGGGCCCACCT 61.637 66.667 42.54 0.00 43.49 4.00
135 136 3.901797 CTGTTCTCGTGGGCCCACC 62.902 68.421 42.54 30.21 43.49 4.61
136 137 2.358737 CTGTTCTCGTGGGCCCAC 60.359 66.667 40.56 40.56 43.01 4.61
137 138 2.525629 TCTGTTCTCGTGGGCCCA 60.526 61.111 24.45 24.45 0.00 5.36
138 139 2.047179 GTCTGTTCTCGTGGGCCC 60.047 66.667 17.59 17.59 0.00 5.80
139 140 1.374758 CTGTCTGTTCTCGTGGGCC 60.375 63.158 0.00 0.00 0.00 5.80
140 141 1.374758 CCTGTCTGTTCTCGTGGGC 60.375 63.158 0.00 0.00 0.00 5.36
141 142 1.374758 GCCTGTCTGTTCTCGTGGG 60.375 63.158 0.00 0.00 0.00 4.61
142 143 0.668706 CTGCCTGTCTGTTCTCGTGG 60.669 60.000 0.00 0.00 0.00 4.94
143 144 0.668706 CCTGCCTGTCTGTTCTCGTG 60.669 60.000 0.00 0.00 0.00 4.35
144 145 1.668294 CCTGCCTGTCTGTTCTCGT 59.332 57.895 0.00 0.00 0.00 4.18
145 146 1.079543 CCCTGCCTGTCTGTTCTCG 60.080 63.158 0.00 0.00 0.00 4.04
146 147 1.376553 GCCCTGCCTGTCTGTTCTC 60.377 63.158 0.00 0.00 0.00 2.87
147 148 2.753029 GCCCTGCCTGTCTGTTCT 59.247 61.111 0.00 0.00 0.00 3.01
148 149 2.360475 GGCCCTGCCTGTCTGTTC 60.360 66.667 0.00 0.00 46.69 3.18
169 170 3.612371 CTAGGATACCGGCTCGCGC 62.612 68.421 0.00 0.00 37.17 6.86
170 171 2.561885 CTAGGATACCGGCTCGCG 59.438 66.667 0.00 0.00 37.17 5.87
171 172 1.902432 ACCTAGGATACCGGCTCGC 60.902 63.158 17.98 0.00 37.17 5.03
172 173 1.524863 CCACCTAGGATACCGGCTCG 61.525 65.000 17.98 0.00 41.22 5.03
173 174 1.817911 GCCACCTAGGATACCGGCTC 61.818 65.000 17.98 0.00 41.22 4.70
174 175 1.837499 GCCACCTAGGATACCGGCT 60.837 63.158 17.98 0.00 41.22 5.52
175 176 2.138179 TGCCACCTAGGATACCGGC 61.138 63.158 17.98 17.96 41.22 6.13
176 177 1.746517 GTGCCACCTAGGATACCGG 59.253 63.158 17.98 0.00 41.22 5.28
177 178 1.746517 GGTGCCACCTAGGATACCG 59.253 63.158 17.98 0.00 41.22 4.02
178 179 0.693092 TGGGTGCCACCTAGGATACC 60.693 60.000 17.98 16.32 42.36 2.73
179 180 2.925078 TGGGTGCCACCTAGGATAC 58.075 57.895 17.98 8.23 41.22 2.24
189 190 3.315949 GGTAGGTCGTGGGTGCCA 61.316 66.667 0.00 0.00 0.00 4.92
190 191 3.310860 CTGGTAGGTCGTGGGTGCC 62.311 68.421 0.00 0.00 0.00 5.01
191 192 2.264794 CTGGTAGGTCGTGGGTGC 59.735 66.667 0.00 0.00 0.00 5.01
192 193 1.183030 TCACTGGTAGGTCGTGGGTG 61.183 60.000 0.00 0.00 0.00 4.61
193 194 0.898789 CTCACTGGTAGGTCGTGGGT 60.899 60.000 0.00 0.00 0.00 4.51
194 195 1.605058 CCTCACTGGTAGGTCGTGGG 61.605 65.000 0.00 0.00 0.00 4.61
195 196 1.890894 CCTCACTGGTAGGTCGTGG 59.109 63.158 0.00 0.00 0.00 4.94
205 206 1.961277 GGCGTTGTCACCTCACTGG 60.961 63.158 0.00 0.00 42.93 4.00
206 207 1.961277 GGGCGTTGTCACCTCACTG 60.961 63.158 0.00 0.00 0.00 3.66
207 208 2.426023 GGGCGTTGTCACCTCACT 59.574 61.111 0.00 0.00 0.00 3.41
208 209 2.668550 GGGGCGTTGTCACCTCAC 60.669 66.667 0.00 0.00 0.00 3.51
209 210 3.948719 GGGGGCGTTGTCACCTCA 61.949 66.667 0.00 0.00 0.00 3.86
230 231 3.599285 TACTCCGTGCGCAAAGGGG 62.599 63.158 26.05 26.05 0.00 4.79
231 232 2.047655 TACTCCGTGCGCAAAGGG 60.048 61.111 26.59 21.20 0.00 3.95
232 233 2.388232 GGTACTCCGTGCGCAAAGG 61.388 63.158 22.89 22.89 0.00 3.11
233 234 1.666553 TGGTACTCCGTGCGCAAAG 60.667 57.895 14.00 13.12 36.30 2.77
234 235 1.957186 GTGGTACTCCGTGCGCAAA 60.957 57.895 14.00 0.00 36.30 3.68
235 236 2.356553 GTGGTACTCCGTGCGCAA 60.357 61.111 14.00 0.00 36.30 4.85
236 237 4.710695 CGTGGTACTCCGTGCGCA 62.711 66.667 5.66 5.66 36.30 6.09
237 238 4.409218 TCGTGGTACTCCGTGCGC 62.409 66.667 0.00 0.00 36.30 6.09
238 239 2.191354 TTCTCGTGGTACTCCGTGCG 62.191 60.000 0.00 0.00 36.30 5.34
239 240 0.456312 CTTCTCGTGGTACTCCGTGC 60.456 60.000 0.00 0.00 36.30 5.34
240 241 1.130749 CTCTTCTCGTGGTACTCCGTG 59.869 57.143 0.00 0.00 36.30 4.94
241 242 1.451067 CTCTTCTCGTGGTACTCCGT 58.549 55.000 0.00 0.00 36.30 4.69
242 243 0.733729 CCTCTTCTCGTGGTACTCCG 59.266 60.000 0.00 0.00 36.30 4.63
243 244 0.456628 GCCTCTTCTCGTGGTACTCC 59.543 60.000 0.00 0.00 0.00 3.85
244 245 1.402613 GAGCCTCTTCTCGTGGTACTC 59.597 57.143 0.00 0.00 0.00 2.59
245 246 1.004979 AGAGCCTCTTCTCGTGGTACT 59.995 52.381 0.00 0.00 38.12 2.73
246 247 1.402613 GAGAGCCTCTTCTCGTGGTAC 59.597 57.143 0.00 0.00 38.12 3.34
247 248 1.004394 TGAGAGCCTCTTCTCGTGGTA 59.996 52.381 0.00 0.00 45.26 3.25
248 249 0.251386 TGAGAGCCTCTTCTCGTGGT 60.251 55.000 0.00 0.00 45.26 4.16
249 250 0.172352 GTGAGAGCCTCTTCTCGTGG 59.828 60.000 0.00 0.00 45.26 4.94
250 251 0.179176 CGTGAGAGCCTCTTCTCGTG 60.179 60.000 0.00 0.00 45.26 4.35
251 252 1.309499 CCGTGAGAGCCTCTTCTCGT 61.309 60.000 0.00 0.00 45.26 4.18
252 253 1.431440 CCGTGAGAGCCTCTTCTCG 59.569 63.158 0.00 1.64 45.26 4.04
253 254 1.813192 CCCGTGAGAGCCTCTTCTC 59.187 63.158 0.00 0.00 43.14 2.87
254 255 2.355193 GCCCGTGAGAGCCTCTTCT 61.355 63.158 0.00 0.00 0.00 2.85
255 256 2.185608 GCCCGTGAGAGCCTCTTC 59.814 66.667 0.00 0.00 0.00 2.87
256 257 3.764466 CGCCCGTGAGAGCCTCTT 61.764 66.667 0.00 0.00 0.00 2.85
279 280 3.757248 ATCGTCATGGGGCGGCTTC 62.757 63.158 9.56 2.13 0.00 3.86
280 281 3.797353 ATCGTCATGGGGCGGCTT 61.797 61.111 9.56 0.00 0.00 4.35
281 282 4.552365 CATCGTCATGGGGCGGCT 62.552 66.667 9.56 0.00 0.00 5.52
315 316 4.668118 TCCGTGCCGTCCGTTTCC 62.668 66.667 0.00 0.00 0.00 3.13
316 317 3.408851 GTCCGTGCCGTCCGTTTC 61.409 66.667 0.00 0.00 0.00 2.78
317 318 3.736732 TTGTCCGTGCCGTCCGTTT 62.737 57.895 0.00 0.00 0.00 3.60
318 319 4.224274 TTGTCCGTGCCGTCCGTT 62.224 61.111 0.00 0.00 0.00 4.44
319 320 4.955774 GTTGTCCGTGCCGTCCGT 62.956 66.667 0.00 0.00 0.00 4.69
321 322 4.309950 AGGTTGTCCGTGCCGTCC 62.310 66.667 0.00 0.00 39.05 4.79
322 323 2.737376 GAGGTTGTCCGTGCCGTC 60.737 66.667 0.00 0.00 39.05 4.79
323 324 4.309950 GGAGGTTGTCCGTGCCGT 62.310 66.667 0.00 0.00 34.84 5.68
331 332 2.359975 CCGGGCAAGGAGGTTGTC 60.360 66.667 0.00 0.00 40.35 3.18
332 333 3.966543 CCCGGGCAAGGAGGTTGT 61.967 66.667 8.08 0.00 38.55 3.32
333 334 3.204467 TTCCCGGGCAAGGAGGTTG 62.204 63.158 18.49 0.00 39.41 3.77
334 335 2.856988 TTCCCGGGCAAGGAGGTT 60.857 61.111 18.49 0.00 34.08 3.50
335 336 3.330720 CTTCCCGGGCAAGGAGGT 61.331 66.667 18.49 0.00 34.08 3.85
336 337 4.803908 GCTTCCCGGGCAAGGAGG 62.804 72.222 24.95 8.89 34.08 4.30
337 338 4.803908 GGCTTCCCGGGCAAGGAG 62.804 72.222 24.95 15.37 34.08 3.69
348 349 0.472161 CCTACCTCCTAGGGGCTTCC 60.472 65.000 9.46 0.00 40.58 3.46
349 350 0.265254 ACCTACCTCCTAGGGGCTTC 59.735 60.000 9.46 0.00 46.21 3.86
350 351 1.219980 GTACCTACCTCCTAGGGGCTT 59.780 57.143 9.46 0.00 46.21 4.35
351 352 0.859064 GTACCTACCTCCTAGGGGCT 59.141 60.000 9.46 0.00 46.21 5.19
352 353 0.859064 AGTACCTACCTCCTAGGGGC 59.141 60.000 9.46 0.00 46.21 5.80
353 354 1.428525 GGAGTACCTACCTCCTAGGGG 59.571 61.905 9.46 4.91 46.21 4.79
354 355 2.108601 CTGGAGTACCTACCTCCTAGGG 59.891 59.091 9.46 0.00 46.21 3.53
356 357 2.175069 TGCTGGAGTACCTACCTCCTAG 59.825 54.545 7.86 5.20 38.07 3.02
357 358 2.211532 TGCTGGAGTACCTACCTCCTA 58.788 52.381 7.86 0.00 38.07 2.94
358 359 1.008403 TGCTGGAGTACCTACCTCCT 58.992 55.000 7.86 0.00 38.07 3.69
359 360 2.089600 ATGCTGGAGTACCTACCTCC 57.910 55.000 0.00 0.00 37.75 4.30
360 361 3.301274 AGAATGCTGGAGTACCTACCTC 58.699 50.000 0.00 0.00 37.04 3.85
361 362 3.406512 AGAATGCTGGAGTACCTACCT 57.593 47.619 0.00 0.00 37.04 3.08
362 363 4.489306 AAAGAATGCTGGAGTACCTACC 57.511 45.455 0.00 0.00 37.04 3.18
363 364 7.379750 CCTATAAAGAATGCTGGAGTACCTAC 58.620 42.308 0.00 0.00 37.04 3.18
364 365 6.497259 CCCTATAAAGAATGCTGGAGTACCTA 59.503 42.308 0.00 0.00 37.04 3.08
365 366 5.308237 CCCTATAAAGAATGCTGGAGTACCT 59.692 44.000 0.00 0.00 37.04 3.08
366 367 5.513267 CCCCTATAAAGAATGCTGGAGTACC 60.513 48.000 0.00 0.00 0.00 3.34
367 368 5.071923 ACCCCTATAAAGAATGCTGGAGTAC 59.928 44.000 0.00 0.00 0.00 2.73
368 369 5.224441 ACCCCTATAAAGAATGCTGGAGTA 58.776 41.667 0.00 0.00 0.00 2.59
369 370 4.047883 ACCCCTATAAAGAATGCTGGAGT 58.952 43.478 0.00 0.00 0.00 3.85
370 371 4.713792 ACCCCTATAAAGAATGCTGGAG 57.286 45.455 0.00 0.00 0.00 3.86
371 372 7.881912 TTATACCCCTATAAAGAATGCTGGA 57.118 36.000 0.00 0.00 0.00 3.86
372 373 8.109634 ACATTATACCCCTATAAAGAATGCTGG 58.890 37.037 0.00 0.00 30.20 4.85
373 374 9.520515 AACATTATACCCCTATAAAGAATGCTG 57.479 33.333 0.00 0.00 30.20 4.41
384 385 9.945633 AAACAAACCATAACATTATACCCCTAT 57.054 29.630 0.00 0.00 0.00 2.57
385 386 9.411189 GAAACAAACCATAACATTATACCCCTA 57.589 33.333 0.00 0.00 0.00 3.53
386 387 7.896496 TGAAACAAACCATAACATTATACCCCT 59.104 33.333 0.00 0.00 0.00 4.79
387 388 8.068892 TGAAACAAACCATAACATTATACCCC 57.931 34.615 0.00 0.00 0.00 4.95
388 389 9.361315 GTTGAAACAAACCATAACATTATACCC 57.639 33.333 0.00 0.00 0.00 3.69
389 390 9.915629 TGTTGAAACAAACCATAACATTATACC 57.084 29.630 0.00 0.00 35.67 2.73
391 392 9.632807 GCTGTTGAAACAAACCATAACATTATA 57.367 29.630 0.00 0.00 38.66 0.98
392 393 8.147058 TGCTGTTGAAACAAACCATAACATTAT 58.853 29.630 0.00 0.00 38.66 1.28
393 394 7.492524 TGCTGTTGAAACAAACCATAACATTA 58.507 30.769 0.00 0.00 38.66 1.90
394 395 6.344500 TGCTGTTGAAACAAACCATAACATT 58.656 32.000 0.00 0.00 38.66 2.71
395 396 5.911752 TGCTGTTGAAACAAACCATAACAT 58.088 33.333 0.00 0.00 38.66 2.71
396 397 5.330455 TGCTGTTGAAACAAACCATAACA 57.670 34.783 0.00 0.00 38.66 2.41
397 398 5.982516 TGATGCTGTTGAAACAAACCATAAC 59.017 36.000 0.00 0.00 38.66 1.89
398 399 6.154203 TGATGCTGTTGAAACAAACCATAA 57.846 33.333 0.00 0.00 38.66 1.90
399 400 5.781210 TGATGCTGTTGAAACAAACCATA 57.219 34.783 0.00 0.00 38.66 2.74
400 401 4.669206 TGATGCTGTTGAAACAAACCAT 57.331 36.364 0.00 1.31 38.66 3.55
401 402 4.669206 ATGATGCTGTTGAAACAAACCA 57.331 36.364 0.00 0.00 38.66 3.67
402 403 5.277442 CCAAATGATGCTGTTGAAACAAACC 60.277 40.000 0.00 0.00 38.66 3.27
403 404 5.523188 TCCAAATGATGCTGTTGAAACAAAC 59.477 36.000 0.00 0.00 38.66 2.93
404 405 5.668471 TCCAAATGATGCTGTTGAAACAAA 58.332 33.333 0.00 0.00 38.66 2.83
405 406 5.273674 TCCAAATGATGCTGTTGAAACAA 57.726 34.783 0.00 0.00 38.66 2.83
406 407 4.796946 GCTCCAAATGATGCTGTTGAAACA 60.797 41.667 0.00 0.00 37.37 2.83
407 408 3.676646 GCTCCAAATGATGCTGTTGAAAC 59.323 43.478 0.00 0.00 0.00 2.78
408 409 3.321396 TGCTCCAAATGATGCTGTTGAAA 59.679 39.130 0.00 0.00 0.00 2.69
409 410 2.892215 TGCTCCAAATGATGCTGTTGAA 59.108 40.909 0.00 0.00 0.00 2.69
410 411 2.490509 CTGCTCCAAATGATGCTGTTGA 59.509 45.455 0.00 0.00 0.00 3.18
411 412 2.490509 TCTGCTCCAAATGATGCTGTTG 59.509 45.455 0.00 0.00 0.00 3.33
412 413 2.753452 CTCTGCTCCAAATGATGCTGTT 59.247 45.455 0.00 0.00 0.00 3.16
413 414 2.026542 TCTCTGCTCCAAATGATGCTGT 60.027 45.455 0.00 0.00 0.00 4.40
414 415 2.640184 TCTCTGCTCCAAATGATGCTG 58.360 47.619 0.00 0.00 0.00 4.41
415 416 3.361281 TTCTCTGCTCCAAATGATGCT 57.639 42.857 0.00 0.00 0.00 3.79
416 417 4.157289 TCTTTTCTCTGCTCCAAATGATGC 59.843 41.667 0.00 0.00 0.00 3.91
417 418 5.892160 TCTTTTCTCTGCTCCAAATGATG 57.108 39.130 0.00 0.00 0.00 3.07
418 419 8.585471 TTATTCTTTTCTCTGCTCCAAATGAT 57.415 30.769 0.00 0.00 0.00 2.45
419 420 8.408043 TTTATTCTTTTCTCTGCTCCAAATGA 57.592 30.769 0.00 0.00 0.00 2.57
420 421 9.480053 TTTTTATTCTTTTCTCTGCTCCAAATG 57.520 29.630 0.00 0.00 0.00 2.32
423 424 9.480053 CAATTTTTATTCTTTTCTCTGCTCCAA 57.520 29.630 0.00 0.00 0.00 3.53
424 425 8.641541 ACAATTTTTATTCTTTTCTCTGCTCCA 58.358 29.630 0.00 0.00 0.00 3.86
428 429 9.358872 CCCTACAATTTTTATTCTTTTCTCTGC 57.641 33.333 0.00 0.00 0.00 4.26
429 430 9.358872 GCCCTACAATTTTTATTCTTTTCTCTG 57.641 33.333 0.00 0.00 0.00 3.35
430 431 9.088987 TGCCCTACAATTTTTATTCTTTTCTCT 57.911 29.630 0.00 0.00 0.00 3.10
431 432 9.875691 ATGCCCTACAATTTTTATTCTTTTCTC 57.124 29.630 0.00 0.00 0.00 2.87
432 433 9.657419 CATGCCCTACAATTTTTATTCTTTTCT 57.343 29.630 0.00 0.00 0.00 2.52
433 434 9.435688 ACATGCCCTACAATTTTTATTCTTTTC 57.564 29.630 0.00 0.00 0.00 2.29
434 435 9.218440 CACATGCCCTACAATTTTTATTCTTTT 57.782 29.630 0.00 0.00 0.00 2.27
435 436 8.592809 TCACATGCCCTACAATTTTTATTCTTT 58.407 29.630 0.00 0.00 0.00 2.52
436 437 8.133024 TCACATGCCCTACAATTTTTATTCTT 57.867 30.769 0.00 0.00 0.00 2.52
437 438 7.716799 TCACATGCCCTACAATTTTTATTCT 57.283 32.000 0.00 0.00 0.00 2.40
438 439 8.770438 TTTCACATGCCCTACAATTTTTATTC 57.230 30.769 0.00 0.00 0.00 1.75
439 440 9.566432 TTTTTCACATGCCCTACAATTTTTATT 57.434 25.926 0.00 0.00 0.00 1.40
440 441 9.218440 CTTTTTCACATGCCCTACAATTTTTAT 57.782 29.630 0.00 0.00 0.00 1.40
441 442 7.172361 GCTTTTTCACATGCCCTACAATTTTTA 59.828 33.333 0.00 0.00 0.00 1.52
442 443 6.017192 GCTTTTTCACATGCCCTACAATTTTT 60.017 34.615 0.00 0.00 0.00 1.94
443 444 5.469760 GCTTTTTCACATGCCCTACAATTTT 59.530 36.000 0.00 0.00 0.00 1.82
444 445 4.996758 GCTTTTTCACATGCCCTACAATTT 59.003 37.500 0.00 0.00 0.00 1.82
445 446 4.040217 TGCTTTTTCACATGCCCTACAATT 59.960 37.500 0.00 0.00 0.00 2.32
446 447 3.577848 TGCTTTTTCACATGCCCTACAAT 59.422 39.130 0.00 0.00 0.00 2.71
447 448 2.961741 TGCTTTTTCACATGCCCTACAA 59.038 40.909 0.00 0.00 0.00 2.41
448 449 2.591923 TGCTTTTTCACATGCCCTACA 58.408 42.857 0.00 0.00 0.00 2.74
449 450 3.658757 TTGCTTTTTCACATGCCCTAC 57.341 42.857 0.00 0.00 0.00 3.18
450 451 3.386078 TGTTTGCTTTTTCACATGCCCTA 59.614 39.130 0.00 0.00 0.00 3.53
451 452 2.170187 TGTTTGCTTTTTCACATGCCCT 59.830 40.909 0.00 0.00 0.00 5.19
452 453 2.287644 GTGTTTGCTTTTTCACATGCCC 59.712 45.455 0.00 0.00 0.00 5.36
453 454 3.197265 AGTGTTTGCTTTTTCACATGCC 58.803 40.909 0.00 0.00 33.84 4.40
454 455 4.567959 AGAAGTGTTTGCTTTTTCACATGC 59.432 37.500 0.00 0.00 33.84 4.06
455 456 5.232838 GGAGAAGTGTTTGCTTTTTCACATG 59.767 40.000 0.00 0.00 33.84 3.21
456 457 5.351458 GGAGAAGTGTTTGCTTTTTCACAT 58.649 37.500 0.00 0.00 33.84 3.21
457 458 4.381505 GGGAGAAGTGTTTGCTTTTTCACA 60.382 41.667 0.00 0.00 33.84 3.58
458 459 4.112634 GGGAGAAGTGTTTGCTTTTTCAC 58.887 43.478 0.00 0.00 0.00 3.18
459 460 3.181491 CGGGAGAAGTGTTTGCTTTTTCA 60.181 43.478 0.00 0.00 0.00 2.69
460 461 3.181490 ACGGGAGAAGTGTTTGCTTTTTC 60.181 43.478 0.00 0.00 0.00 2.29
461 462 2.758423 ACGGGAGAAGTGTTTGCTTTTT 59.242 40.909 0.00 0.00 0.00 1.94
462 463 2.375146 ACGGGAGAAGTGTTTGCTTTT 58.625 42.857 0.00 0.00 0.00 2.27
463 464 2.052782 ACGGGAGAAGTGTTTGCTTT 57.947 45.000 0.00 0.00 0.00 3.51
464 465 2.490991 GTACGGGAGAAGTGTTTGCTT 58.509 47.619 0.00 0.00 0.00 3.91
465 466 1.270678 GGTACGGGAGAAGTGTTTGCT 60.271 52.381 0.00 0.00 0.00 3.91
466 467 1.154197 GGTACGGGAGAAGTGTTTGC 58.846 55.000 0.00 0.00 0.00 3.68
467 468 2.536761 TGGTACGGGAGAAGTGTTTG 57.463 50.000 0.00 0.00 0.00 2.93
468 469 3.564053 TTTGGTACGGGAGAAGTGTTT 57.436 42.857 0.00 0.00 0.00 2.83
469 470 3.208594 GTTTTGGTACGGGAGAAGTGTT 58.791 45.455 0.00 0.00 0.00 3.32
470 471 2.486013 GGTTTTGGTACGGGAGAAGTGT 60.486 50.000 0.00 0.00 0.00 3.55
471 472 2.148768 GGTTTTGGTACGGGAGAAGTG 58.851 52.381 0.00 0.00 0.00 3.16
472 473 1.072806 GGGTTTTGGTACGGGAGAAGT 59.927 52.381 0.00 0.00 0.00 3.01
473 474 1.350019 AGGGTTTTGGTACGGGAGAAG 59.650 52.381 0.00 0.00 0.00 2.85
474 475 1.437397 AGGGTTTTGGTACGGGAGAA 58.563 50.000 0.00 0.00 0.00 2.87
475 476 1.348696 GAAGGGTTTTGGTACGGGAGA 59.651 52.381 0.00 0.00 0.00 3.71
476 477 1.350019 AGAAGGGTTTTGGTACGGGAG 59.650 52.381 0.00 0.00 0.00 4.30
477 478 1.348696 GAGAAGGGTTTTGGTACGGGA 59.651 52.381 0.00 0.00 0.00 5.14
478 479 1.350019 AGAGAAGGGTTTTGGTACGGG 59.650 52.381 0.00 0.00 0.00 5.28
479 480 2.302157 AGAGAGAAGGGTTTTGGTACGG 59.698 50.000 0.00 0.00 0.00 4.02
480 481 3.679824 AGAGAGAAGGGTTTTGGTACG 57.320 47.619 0.00 0.00 0.00 3.67
481 482 5.230323 AGAAGAGAGAAGGGTTTTGGTAC 57.770 43.478 0.00 0.00 0.00 3.34
482 483 5.247792 GGTAGAAGAGAGAAGGGTTTTGGTA 59.752 44.000 0.00 0.00 0.00 3.25
483 484 4.041815 GGTAGAAGAGAGAAGGGTTTTGGT 59.958 45.833 0.00 0.00 0.00 3.67
484 485 4.565861 GGGTAGAAGAGAGAAGGGTTTTGG 60.566 50.000 0.00 0.00 0.00 3.28
485 486 4.287326 AGGGTAGAAGAGAGAAGGGTTTTG 59.713 45.833 0.00 0.00 0.00 2.44
486 487 4.504382 AGGGTAGAAGAGAGAAGGGTTTT 58.496 43.478 0.00 0.00 0.00 2.43
487 488 4.149090 AGGGTAGAAGAGAGAAGGGTTT 57.851 45.455 0.00 0.00 0.00 3.27
488 489 3.856747 AGGGTAGAAGAGAGAAGGGTT 57.143 47.619 0.00 0.00 0.00 4.11
489 490 4.969136 TTAGGGTAGAAGAGAGAAGGGT 57.031 45.455 0.00 0.00 0.00 4.34
490 491 5.459505 TGATTAGGGTAGAAGAGAGAAGGG 58.540 45.833 0.00 0.00 0.00 3.95
491 492 7.610580 AATGATTAGGGTAGAAGAGAGAAGG 57.389 40.000 0.00 0.00 0.00 3.46
492 493 9.898152 AAAAATGATTAGGGTAGAAGAGAGAAG 57.102 33.333 0.00 0.00 0.00 2.85
497 498 9.267084 GCTCTAAAAATGATTAGGGTAGAAGAG 57.733 37.037 0.00 0.00 36.05 2.85
498 499 8.768397 TGCTCTAAAAATGATTAGGGTAGAAGA 58.232 33.333 0.00 0.00 36.05 2.87
499 500 8.964476 TGCTCTAAAAATGATTAGGGTAGAAG 57.036 34.615 0.00 0.00 36.05 2.85
500 501 9.561069 GATGCTCTAAAAATGATTAGGGTAGAA 57.439 33.333 0.00 0.00 36.05 2.10
501 502 8.713971 TGATGCTCTAAAAATGATTAGGGTAGA 58.286 33.333 0.00 0.00 36.05 2.59
502 503 8.908786 TGATGCTCTAAAAATGATTAGGGTAG 57.091 34.615 0.00 0.00 36.05 3.18
503 504 9.120538 GTTGATGCTCTAAAAATGATTAGGGTA 57.879 33.333 0.00 0.00 36.05 3.69
504 505 7.068716 GGTTGATGCTCTAAAAATGATTAGGGT 59.931 37.037 0.00 0.00 36.05 4.34
505 506 7.286316 AGGTTGATGCTCTAAAAATGATTAGGG 59.714 37.037 0.00 0.00 36.61 3.53
506 507 8.230472 AGGTTGATGCTCTAAAAATGATTAGG 57.770 34.615 0.00 0.00 34.36 2.69
507 508 9.118300 AGAGGTTGATGCTCTAAAAATGATTAG 57.882 33.333 0.00 0.00 34.79 1.73
508 509 9.466497 AAGAGGTTGATGCTCTAAAAATGATTA 57.534 29.630 0.00 0.00 0.00 1.75
509 510 7.951347 AGAGGTTGATGCTCTAAAAATGATT 57.049 32.000 0.00 0.00 0.00 2.57
510 511 7.613022 TGAAGAGGTTGATGCTCTAAAAATGAT 59.387 33.333 0.00 0.00 0.00 2.45
511 512 6.942005 TGAAGAGGTTGATGCTCTAAAAATGA 59.058 34.615 0.00 0.00 0.00 2.57
512 513 7.149569 TGAAGAGGTTGATGCTCTAAAAATG 57.850 36.000 0.00 0.00 0.00 2.32
513 514 7.613022 TGATGAAGAGGTTGATGCTCTAAAAAT 59.387 33.333 0.00 0.00 0.00 1.82
514 515 6.942005 TGATGAAGAGGTTGATGCTCTAAAAA 59.058 34.615 0.00 0.00 0.00 1.94
515 516 6.475504 TGATGAAGAGGTTGATGCTCTAAAA 58.524 36.000 0.00 0.00 0.00 1.52
516 517 6.053632 TGATGAAGAGGTTGATGCTCTAAA 57.946 37.500 0.00 0.00 0.00 1.85
517 518 5.682234 TGATGAAGAGGTTGATGCTCTAA 57.318 39.130 0.00 0.00 0.00 2.10
518 519 5.364735 TGATGATGAAGAGGTTGATGCTCTA 59.635 40.000 0.00 0.00 0.00 2.43
519 520 4.163649 TGATGATGAAGAGGTTGATGCTCT 59.836 41.667 0.00 0.00 0.00 4.09
520 521 4.449131 TGATGATGAAGAGGTTGATGCTC 58.551 43.478 0.00 0.00 0.00 4.26
521 522 4.498894 TGATGATGAAGAGGTTGATGCT 57.501 40.909 0.00 0.00 0.00 3.79
522 523 5.769484 AATGATGATGAAGAGGTTGATGC 57.231 39.130 0.00 0.00 0.00 3.91
523 524 7.329588 TGAAATGATGATGAAGAGGTTGATG 57.670 36.000 0.00 0.00 0.00 3.07
524 525 7.832685 TCTTGAAATGATGATGAAGAGGTTGAT 59.167 33.333 0.00 0.00 0.00 2.57
525 526 7.170277 TCTTGAAATGATGATGAAGAGGTTGA 58.830 34.615 0.00 0.00 0.00 3.18
526 527 7.387119 TCTTGAAATGATGATGAAGAGGTTG 57.613 36.000 0.00 0.00 0.00 3.77
527 528 9.118300 GTATCTTGAAATGATGATGAAGAGGTT 57.882 33.333 0.00 0.00 32.45 3.50
528 529 8.492782 AGTATCTTGAAATGATGATGAAGAGGT 58.507 33.333 0.00 0.00 32.45 3.85
529 530 8.905660 AGTATCTTGAAATGATGATGAAGAGG 57.094 34.615 0.00 0.00 32.45 3.69
549 550 7.251994 ACTGATTGAGTCGTTTGTAGAGTATC 58.748 38.462 0.00 0.00 0.00 2.24
550 551 7.159322 ACTGATTGAGTCGTTTGTAGAGTAT 57.841 36.000 0.00 0.00 0.00 2.12
551 552 6.570672 ACTGATTGAGTCGTTTGTAGAGTA 57.429 37.500 0.00 0.00 0.00 2.59
552 553 5.455056 ACTGATTGAGTCGTTTGTAGAGT 57.545 39.130 0.00 0.00 0.00 3.24
580 581 1.075601 ACAATGGGTGACACCTGGAT 58.924 50.000 23.72 10.90 38.64 3.41
602 605 6.611613 AGTCCATCTTCACACTGATTAAGA 57.388 37.500 0.00 0.00 32.85 2.10
621 624 7.201670 CGGGTCTAAATGTTGGTAATTTAGTCC 60.202 40.741 16.92 16.92 45.33 3.85
705 710 6.516194 GCGTCTAGTGCAGGGTTAAATATCTA 60.516 42.308 0.00 0.00 0.00 1.98
763 768 2.742053 ACGACTCACCATTTCATTTCCG 59.258 45.455 0.00 0.00 0.00 4.30
1705 1731 1.500736 AGGAGGCCCCTCAAATAATGG 59.499 52.381 15.72 0.00 43.31 3.16
1734 1760 4.033990 TCTTCTCGGATCGAATCACTTG 57.966 45.455 0.00 0.00 34.74 3.16
1757 1783 1.069358 GATCAGAAGAACCTAGCCGGG 59.931 57.143 2.18 0.00 36.97 5.73
1834 1860 9.565213 GATGAACAAAAGTAATCAGAGAAATGG 57.435 33.333 0.00 0.00 0.00 3.16
1897 1927 4.602340 AATACAGCGGGGTCATAGTTAG 57.398 45.455 0.00 0.00 0.00 2.34
1912 1942 6.751888 GTGCAACCTAAATGCCTAAAATACAG 59.248 38.462 0.00 0.00 43.16 2.74
2013 2043 9.109393 TGAATTATCCGAATATATAGCAAAGGC 57.891 33.333 0.00 0.00 41.61 4.35
2071 2101 8.906867 CCAAAGAAGCATGGATCTCTATAAAAA 58.093 33.333 0.00 0.00 39.12 1.94
2072 2102 8.055181 ACCAAAGAAGCATGGATCTCTATAAAA 58.945 33.333 0.00 0.00 39.12 1.52
2073 2103 7.577303 ACCAAAGAAGCATGGATCTCTATAAA 58.423 34.615 0.00 0.00 39.12 1.40
2074 2104 7.141758 ACCAAAGAAGCATGGATCTCTATAA 57.858 36.000 0.00 0.00 39.12 0.98
2075 2105 6.753913 ACCAAAGAAGCATGGATCTCTATA 57.246 37.500 0.00 0.00 39.12 1.31
2076 2106 5.643421 ACCAAAGAAGCATGGATCTCTAT 57.357 39.130 0.00 0.00 39.12 1.98
2084 2114 6.823689 AGTATACACTTACCAAAGAAGCATGG 59.176 38.462 5.50 0.00 42.60 3.66
2156 2190 3.885297 CGGCCATATGAATTTCAGTTCCT 59.115 43.478 2.24 0.00 0.00 3.36
2157 2191 3.632145 ACGGCCATATGAATTTCAGTTCC 59.368 43.478 2.24 1.62 0.00 3.62
2158 2192 4.900635 ACGGCCATATGAATTTCAGTTC 57.099 40.909 2.24 0.00 0.00 3.01
2159 2193 4.821805 CCTACGGCCATATGAATTTCAGTT 59.178 41.667 2.24 0.00 0.00 3.16
2161 2195 3.753272 CCCTACGGCCATATGAATTTCAG 59.247 47.826 2.24 0.00 0.00 3.02
2162 2196 3.392947 TCCCTACGGCCATATGAATTTCA 59.607 43.478 2.24 0.75 0.00 2.69
2163 2197 3.751698 GTCCCTACGGCCATATGAATTTC 59.248 47.826 2.24 0.00 0.00 2.17
2164 2198 3.394606 AGTCCCTACGGCCATATGAATTT 59.605 43.478 2.24 0.00 0.00 1.82
2166 2200 2.303022 CAGTCCCTACGGCCATATGAAT 59.697 50.000 2.24 0.00 0.00 2.57
2228 2272 4.930963 TGATGTGTTACAGGTTTTGCAAG 58.069 39.130 0.00 0.00 0.00 4.01
2308 2352 7.588497 ACCTCAAAGAGAATAAAGCAAAGTT 57.412 32.000 0.00 0.00 0.00 2.66
2314 2358 9.995957 GAATTAGAACCTCAAAGAGAATAAAGC 57.004 33.333 0.00 0.00 0.00 3.51
2336 2380 1.147817 ACCAAAGTGCCCTGAGGAATT 59.852 47.619 0.00 0.00 33.47 2.17
2369 2414 5.007136 GCTGGTCAGTTGCTCATAACTAATC 59.993 44.000 0.00 0.00 38.78 1.75
2370 2415 4.878397 GCTGGTCAGTTGCTCATAACTAAT 59.122 41.667 0.00 0.00 38.78 1.73
2374 2419 2.704572 AGCTGGTCAGTTGCTCATAAC 58.295 47.619 0.00 0.00 30.41 1.89
2375 2420 3.369471 GGTAGCTGGTCAGTTGCTCATAA 60.369 47.826 0.00 0.00 38.15 1.90
2376 2421 2.168521 GGTAGCTGGTCAGTTGCTCATA 59.831 50.000 0.00 0.00 38.15 2.15
2377 2422 1.065854 GGTAGCTGGTCAGTTGCTCAT 60.066 52.381 0.00 0.00 38.15 2.90
2378 2423 0.321671 GGTAGCTGGTCAGTTGCTCA 59.678 55.000 0.00 0.00 38.15 4.26
2379 2424 0.321671 TGGTAGCTGGTCAGTTGCTC 59.678 55.000 0.00 0.00 38.15 4.26
2380 2425 0.764890 TTGGTAGCTGGTCAGTTGCT 59.235 50.000 0.00 0.00 40.43 3.91
2381 2426 0.875059 GTTGGTAGCTGGTCAGTTGC 59.125 55.000 0.00 0.00 0.00 4.17
2382 2427 1.148310 CGTTGGTAGCTGGTCAGTTG 58.852 55.000 0.00 0.00 0.00 3.16
2383 2428 1.045407 TCGTTGGTAGCTGGTCAGTT 58.955 50.000 0.00 0.00 0.00 3.16
2384 2429 1.045407 TTCGTTGGTAGCTGGTCAGT 58.955 50.000 0.00 0.00 0.00 3.41
2389 2434 3.982576 AAAAAGTTCGTTGGTAGCTGG 57.017 42.857 0.00 0.00 0.00 4.85
2444 2492 2.225019 AGAGAATGAACACGCAAAGCTG 59.775 45.455 0.00 0.00 0.00 4.24
2542 2755 2.048127 GGTCAGGTGCCGAGTGTC 60.048 66.667 0.00 0.00 0.00 3.67
2543 2756 1.978455 TTTGGTCAGGTGCCGAGTGT 61.978 55.000 0.00 0.00 0.00 3.55
2544 2757 1.227823 TTTGGTCAGGTGCCGAGTG 60.228 57.895 0.00 0.00 0.00 3.51
2563 2886 1.346722 GACCACATAGGGGGTATTCGG 59.653 57.143 0.00 0.00 43.89 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.