Multiple sequence alignment - TraesCS7D01G236700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G236700 chr7D 100.000 5978 0 0 446 6423 199626382 199632359 0.000000e+00 11040.0
1 TraesCS7D01G236700 chr7D 100.000 104 0 0 1 104 199625937 199626040 6.570000e-45 193.0
2 TraesCS7D01G236700 chr7B 92.523 3504 163 32 1902 5352 164586485 164589942 0.000000e+00 4927.0
3 TraesCS7D01G236700 chr7B 91.181 703 31 15 930 1609 164585469 164586163 0.000000e+00 926.0
4 TraesCS7D01G236700 chr7B 87.826 230 18 8 1608 1835 164586256 164586477 1.780000e-65 261.0
5 TraesCS7D01G236700 chr7B 82.034 295 35 8 461 745 164583796 164584082 1.080000e-57 235.0
6 TraesCS7D01G236700 chr7B 86.250 80 10 1 5608 5687 202101950 202101872 1.150000e-12 86.1
7 TraesCS7D01G236700 chr7A 93.913 3253 169 19 1905 5145 209694739 209697974 0.000000e+00 4883.0
8 TraesCS7D01G236700 chr7A 93.475 1180 53 11 5149 6311 209698024 209699196 0.000000e+00 1731.0
9 TraesCS7D01G236700 chr7A 92.838 740 23 16 888 1600 209693708 209694444 0.000000e+00 1046.0
10 TraesCS7D01G236700 chr7A 88.013 317 29 3 3976 4291 692230332 692230640 3.660000e-97 366.0
11 TraesCS7D01G236700 chr7A 89.041 219 17 5 1608 1826 209694506 209694717 1.370000e-66 265.0
12 TraesCS7D01G236700 chr7A 84.516 155 14 2 454 608 209693099 209693243 1.870000e-30 145.0
13 TraesCS7D01G236700 chr7A 95.455 66 3 0 3551 3616 692230717 692230652 8.810000e-19 106.0
14 TraesCS7D01G236700 chr1D 89.590 317 24 3 3976 4291 393951192 393950884 1.680000e-105 394.0
15 TraesCS7D01G236700 chr1D 96.970 66 2 0 3551 3616 393950807 393950872 1.890000e-20 111.0
16 TraesCS7D01G236700 chr5D 89.274 317 25 3 3976 4291 375002963 375003271 7.810000e-104 388.0
17 TraesCS7D01G236700 chr5D 89.274 317 25 4 3976 4291 397472211 397471903 7.810000e-104 388.0
18 TraesCS7D01G236700 chr5D 87.697 317 30 3 3976 4291 184453996 184454304 1.700000e-95 361.0
19 TraesCS7D01G236700 chr5D 95.714 70 2 1 3547 3616 184454384 184454316 1.890000e-20 111.0
20 TraesCS7D01G236700 chr5D 96.970 66 2 0 3551 3616 375003348 375003283 1.890000e-20 111.0
21 TraesCS7D01G236700 chr5D 96.970 66 2 0 3551 3616 397471826 397471891 1.890000e-20 111.0
22 TraesCS7D01G236700 chr4A 87.066 317 32 3 3976 4291 444378749 444379057 3.690000e-92 350.0
23 TraesCS7D01G236700 chr4A 95.385 65 3 0 3551 3615 444379134 444379070 3.170000e-18 104.0
24 TraesCS7D01G236700 chr2A 87.066 317 32 3 3976 4291 478456561 478456869 3.690000e-92 350.0
25 TraesCS7D01G236700 chr2A 95.455 66 3 0 3551 3616 478456946 478456881 8.810000e-19 106.0
26 TraesCS7D01G236700 chr3A 87.213 305 30 3 3988 4291 315887384 315887088 7.980000e-89 339.0
27 TraesCS7D01G236700 chr1A 84.424 321 40 4 3973 4291 205554254 205554566 2.250000e-79 307.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G236700 chr7D 199625937 199632359 6422 False 5616.50 11040 100.0000 1 6423 2 chr7D.!!$F1 6422
1 TraesCS7D01G236700 chr7B 164583796 164589942 6146 False 1587.25 4927 88.3910 461 5352 4 chr7B.!!$F1 4891
2 TraesCS7D01G236700 chr7A 209693099 209699196 6097 False 1614.00 4883 90.7566 454 6311 5 chr7A.!!$F2 5857

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
87 88 0.181114 AGCCAGCTTCCATATTCGCA 59.819 50.000 0.00 0.00 0.00 5.10 F
99 100 0.250858 TATTCGCATGCATGAGGGGG 60.251 55.000 30.64 11.51 0.00 5.40 F
1057 2478 0.595825 CCCGCCGTCGTAAATCTACC 60.596 60.000 0.00 0.00 0.00 3.18 F
1455 2903 0.827089 TGGGGTGCAATGAACCACTG 60.827 55.000 14.80 0.00 42.03 3.66 F
2333 3937 2.039879 AGGCACCCATCTAGTTTTCGTT 59.960 45.455 0.00 0.00 0.00 3.85 F
3646 5261 0.239347 GCATGAGCCACAACACTGAC 59.761 55.000 0.00 0.00 33.58 3.51 F
3804 5419 1.439644 GCCTAGAGACCCAGCTTCG 59.560 63.158 0.00 0.00 0.00 3.79 F
3840 5455 1.525619 GCATCCGTCGCTTACAATACC 59.474 52.381 0.00 0.00 0.00 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1439 2887 0.318955 GCACAGTGGTTCATTGCACC 60.319 55.0 1.84 0.00 33.24 5.01 R
1886 3484 0.681733 TATGAATCGCAGGAGCTCCC 59.318 55.0 29.54 14.03 39.10 4.30 R
1942 3540 0.770499 TCCCTGAAACACCAGCATGA 59.230 50.0 0.00 0.00 39.69 3.07 R
2625 4238 1.246056 GGCATCTGCAGCAAGGTGAA 61.246 55.0 9.47 0.00 44.36 3.18 R
3756 5371 0.037326 CAGAGGCTCTTACAACCGCA 60.037 55.0 15.90 0.00 0.00 5.69 R
4705 6332 0.106918 AAAAGGCAGGACCAACGTCA 60.107 50.0 0.00 0.00 43.14 4.35 R
5367 7052 1.019805 TTTCCGCGTGACAACACACA 61.020 50.0 4.92 0.00 46.20 3.72 R
5747 7434 1.128200 TCTATCCACCACCCATTCGG 58.872 55.0 0.00 0.00 37.81 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.507102 GCTACTCAAGCGCTCGCA 60.507 61.111 12.06 0.00 42.53 5.10
30 31 1.880340 GCTACTCAAGCGCTCGCAT 60.880 57.895 12.06 0.98 42.53 4.73
31 32 0.595053 GCTACTCAAGCGCTCGCATA 60.595 55.000 12.06 0.34 42.53 3.14
32 33 1.932604 GCTACTCAAGCGCTCGCATAT 60.933 52.381 12.06 0.00 42.53 1.78
33 34 2.398498 CTACTCAAGCGCTCGCATATT 58.602 47.619 12.06 0.00 44.88 1.28
34 35 1.656652 ACTCAAGCGCTCGCATATTT 58.343 45.000 12.06 0.00 44.88 1.40
35 36 1.594862 ACTCAAGCGCTCGCATATTTC 59.405 47.619 12.06 0.00 44.88 2.17
36 37 0.576798 TCAAGCGCTCGCATATTTCG 59.423 50.000 12.06 0.00 44.88 3.46
37 38 0.576798 CAAGCGCTCGCATATTTCGA 59.423 50.000 12.06 0.00 44.88 3.71
38 39 1.193203 CAAGCGCTCGCATATTTCGAT 59.807 47.619 12.06 0.00 44.88 3.59
39 40 2.347697 AGCGCTCGCATATTTCGATA 57.652 45.000 16.86 0.00 44.88 2.92
40 41 1.986378 AGCGCTCGCATATTTCGATAC 59.014 47.619 16.86 0.00 44.88 2.24
41 42 1.265923 GCGCTCGCATATTTCGATACG 60.266 52.381 9.59 11.82 41.49 3.06
42 43 1.317611 CGCTCGCATATTTCGATACGG 59.682 52.381 0.00 0.00 35.25 4.02
43 44 2.592194 GCTCGCATATTTCGATACGGA 58.408 47.619 0.00 0.00 35.25 4.69
44 45 2.984471 GCTCGCATATTTCGATACGGAA 59.016 45.455 0.00 0.00 35.25 4.30
45 46 3.427528 GCTCGCATATTTCGATACGGAAA 59.572 43.478 0.00 0.00 39.96 3.13
46 47 4.084745 GCTCGCATATTTCGATACGGAAAA 60.085 41.667 0.00 0.00 39.19 2.29
47 48 5.557514 GCTCGCATATTTCGATACGGAAAAA 60.558 40.000 0.00 0.00 39.19 1.94
48 49 5.969741 TCGCATATTTCGATACGGAAAAAG 58.030 37.500 0.00 0.00 39.19 2.27
49 50 5.050634 TCGCATATTTCGATACGGAAAAAGG 60.051 40.000 0.00 0.00 39.19 3.11
50 51 5.277154 CGCATATTTCGATACGGAAAAAGGT 60.277 40.000 0.00 0.00 39.19 3.50
51 52 5.907391 GCATATTTCGATACGGAAAAAGGTG 59.093 40.000 0.00 0.00 39.19 4.00
52 53 6.457799 GCATATTTCGATACGGAAAAAGGTGT 60.458 38.462 0.00 0.00 39.19 4.16
53 54 4.735662 TTTCGATACGGAAAAAGGTGTG 57.264 40.909 0.00 0.00 33.23 3.82
54 55 2.070783 TCGATACGGAAAAAGGTGTGC 58.929 47.619 0.00 0.00 0.00 4.57
55 56 2.073816 CGATACGGAAAAAGGTGTGCT 58.926 47.619 0.00 0.00 0.00 4.40
56 57 2.093783 CGATACGGAAAAAGGTGTGCTC 59.906 50.000 0.00 0.00 0.00 4.26
57 58 1.504359 TACGGAAAAAGGTGTGCTCG 58.496 50.000 0.00 0.00 0.00 5.03
58 59 0.463116 ACGGAAAAAGGTGTGCTCGT 60.463 50.000 0.00 0.00 0.00 4.18
59 60 1.202557 ACGGAAAAAGGTGTGCTCGTA 60.203 47.619 0.00 0.00 0.00 3.43
60 61 1.193874 CGGAAAAAGGTGTGCTCGTAC 59.806 52.381 0.00 0.00 0.00 3.67
61 62 1.534163 GGAAAAAGGTGTGCTCGTACC 59.466 52.381 0.00 0.00 37.23 3.34
63 64 3.555586 GGAAAAAGGTGTGCTCGTACCTA 60.556 47.826 0.00 0.00 46.28 3.08
64 65 2.738013 AAAGGTGTGCTCGTACCTAC 57.262 50.000 0.00 0.00 46.28 3.18
65 66 1.920610 AAGGTGTGCTCGTACCTACT 58.079 50.000 0.00 0.00 46.28 2.57
66 67 1.174783 AGGTGTGCTCGTACCTACTG 58.825 55.000 0.00 0.00 45.20 2.74
67 68 0.886563 GGTGTGCTCGTACCTACTGT 59.113 55.000 0.00 0.00 34.11 3.55
68 69 2.086869 GGTGTGCTCGTACCTACTGTA 58.913 52.381 0.00 0.00 34.11 2.74
69 70 2.097142 GGTGTGCTCGTACCTACTGTAG 59.903 54.545 7.87 7.87 34.11 2.74
70 71 1.741706 TGTGCTCGTACCTACTGTAGC 59.258 52.381 9.35 0.00 0.00 3.58
71 72 1.065251 GTGCTCGTACCTACTGTAGCC 59.935 57.143 9.35 0.00 0.00 3.93
72 73 1.340308 TGCTCGTACCTACTGTAGCCA 60.340 52.381 9.35 0.00 0.00 4.75
73 74 1.334243 GCTCGTACCTACTGTAGCCAG 59.666 57.143 9.35 0.00 44.68 4.85
74 75 1.334243 CTCGTACCTACTGTAGCCAGC 59.666 57.143 9.35 0.00 42.81 4.85
75 76 1.064906 TCGTACCTACTGTAGCCAGCT 60.065 52.381 9.35 0.00 42.81 4.24
76 77 1.749634 CGTACCTACTGTAGCCAGCTT 59.250 52.381 9.35 0.00 42.81 3.74
77 78 2.223525 CGTACCTACTGTAGCCAGCTTC 60.224 54.545 9.35 0.00 42.81 3.86
78 79 1.196012 ACCTACTGTAGCCAGCTTCC 58.804 55.000 9.35 0.00 42.81 3.46
79 80 1.195115 CCTACTGTAGCCAGCTTCCA 58.805 55.000 9.35 0.00 42.81 3.53
80 81 1.765314 CCTACTGTAGCCAGCTTCCAT 59.235 52.381 9.35 0.00 42.81 3.41
81 82 2.965831 CCTACTGTAGCCAGCTTCCATA 59.034 50.000 9.35 0.00 42.81 2.74
82 83 3.580458 CCTACTGTAGCCAGCTTCCATAT 59.420 47.826 9.35 0.00 42.81 1.78
83 84 4.040952 CCTACTGTAGCCAGCTTCCATATT 59.959 45.833 9.35 0.00 42.81 1.28
84 85 4.078639 ACTGTAGCCAGCTTCCATATTC 57.921 45.455 0.00 0.00 42.81 1.75
85 86 3.062763 CTGTAGCCAGCTTCCATATTCG 58.937 50.000 0.00 0.00 0.00 3.34
86 87 1.801178 GTAGCCAGCTTCCATATTCGC 59.199 52.381 0.00 0.00 0.00 4.70
87 88 0.181114 AGCCAGCTTCCATATTCGCA 59.819 50.000 0.00 0.00 0.00 5.10
88 89 1.202855 AGCCAGCTTCCATATTCGCAT 60.203 47.619 0.00 0.00 0.00 4.73
89 90 1.068748 GCCAGCTTCCATATTCGCATG 60.069 52.381 0.00 0.00 0.00 4.06
90 91 1.068748 CCAGCTTCCATATTCGCATGC 60.069 52.381 7.91 7.91 0.00 4.06
91 92 1.605232 CAGCTTCCATATTCGCATGCA 59.395 47.619 19.57 0.00 0.00 3.96
92 93 2.228103 CAGCTTCCATATTCGCATGCAT 59.772 45.455 19.57 7.15 0.00 3.96
93 94 2.228103 AGCTTCCATATTCGCATGCATG 59.772 45.455 22.70 22.70 0.00 4.06
94 95 2.227149 GCTTCCATATTCGCATGCATGA 59.773 45.455 30.64 10.12 0.00 3.07
95 96 3.669824 GCTTCCATATTCGCATGCATGAG 60.670 47.826 30.64 26.62 0.00 2.90
96 97 2.429478 TCCATATTCGCATGCATGAGG 58.571 47.619 30.64 19.80 0.00 3.86
97 98 1.471287 CCATATTCGCATGCATGAGGG 59.529 52.381 30.64 18.06 0.00 4.30
98 99 1.471287 CATATTCGCATGCATGAGGGG 59.529 52.381 30.64 14.88 0.00 4.79
99 100 0.250858 TATTCGCATGCATGAGGGGG 60.251 55.000 30.64 11.51 0.00 5.40
469 470 2.616960 CGAGTTCATTCGATCCACCAA 58.383 47.619 0.00 0.00 43.03 3.67
471 472 3.062639 CGAGTTCATTCGATCCACCAAAG 59.937 47.826 0.00 0.00 43.03 2.77
554 555 5.057149 ACAGGGCATCTATAATCACGAAAC 58.943 41.667 0.00 0.00 0.00 2.78
555 556 4.150627 CAGGGCATCTATAATCACGAAACG 59.849 45.833 0.00 0.00 0.00 3.60
556 557 4.038763 AGGGCATCTATAATCACGAAACGA 59.961 41.667 0.00 0.00 0.00 3.85
557 558 4.748102 GGGCATCTATAATCACGAAACGAA 59.252 41.667 0.00 0.00 0.00 3.85
558 559 5.235616 GGGCATCTATAATCACGAAACGAAA 59.764 40.000 0.00 0.00 0.00 3.46
566 567 5.432885 AATCACGAAACGAAATTTCTGGT 57.567 34.783 15.92 4.89 44.03 4.00
579 580 7.148069 ACGAAATTTCTGGTCTTGTTTTCTTCT 60.148 33.333 15.92 0.00 0.00 2.85
610 762 2.122783 TTTAGGCATTTCCACCTCCG 57.877 50.000 0.00 0.00 37.50 4.63
632 784 4.614535 CGCTTCCAAGGAGAGTTTGATTTG 60.615 45.833 0.00 0.00 0.00 2.32
664 816 4.804108 ACTTCATGTCTTTCGTCTGAGAG 58.196 43.478 0.00 0.00 0.00 3.20
683 838 2.168728 GAGGGTAATCACTTCCGCTTCT 59.831 50.000 0.00 0.00 0.00 2.85
684 839 2.572104 AGGGTAATCACTTCCGCTTCTT 59.428 45.455 0.00 0.00 0.00 2.52
685 840 3.773119 AGGGTAATCACTTCCGCTTCTTA 59.227 43.478 0.00 0.00 0.00 2.10
687 842 4.501071 GGTAATCACTTCCGCTTCTTACA 58.499 43.478 0.00 0.00 0.00 2.41
688 843 4.329256 GGTAATCACTTCCGCTTCTTACAC 59.671 45.833 0.00 0.00 0.00 2.90
692 855 1.068474 CTTCCGCTTCTTACACGGTG 58.932 55.000 6.58 6.58 46.92 4.94
693 856 0.675083 TTCCGCTTCTTACACGGTGA 59.325 50.000 16.29 0.00 46.92 4.02
729 892 4.538746 AACCTCTTACCTCCGAGAAAAG 57.461 45.455 0.00 0.54 0.00 2.27
775 938 1.092348 AGATAGAGTGTGCGCGTGTA 58.908 50.000 8.43 0.00 0.00 2.90
788 951 4.090066 GTGCGCGTGTATTTATAGGATGAG 59.910 45.833 8.43 0.00 0.00 2.90
793 956 5.119279 GCGTGTATTTATAGGATGAGTGCAG 59.881 44.000 0.00 0.00 0.00 4.41
814 977 3.932710 AGGTGCGTGTATGTAAACATCTG 59.067 43.478 0.00 0.00 37.76 2.90
820 983 4.781026 CGTGTATGTAAACATCTGCGTTTG 59.219 41.667 0.00 0.00 39.39 2.93
827 990 0.790207 ACATCTGCGTTTGTAGCGTG 59.210 50.000 0.00 0.00 37.44 5.34
830 993 1.292061 TCTGCGTTTGTAGCGTGTTT 58.708 45.000 0.00 0.00 37.44 2.83
867 1528 2.949106 CTGGAGGCAGCACAAACG 59.051 61.111 0.00 0.00 0.00 3.60
898 2308 3.753272 GCAGATCACCTCTACTTGCAAAA 59.247 43.478 0.00 0.00 31.13 2.44
900 2310 5.693814 CAGATCACCTCTACTTGCAAAAAC 58.306 41.667 0.00 0.00 31.13 2.43
928 2338 2.870175 AGATGACCATCTCTACTCCCG 58.130 52.381 6.69 0.00 44.37 5.14
1057 2478 0.595825 CCCGCCGTCGTAAATCTACC 60.596 60.000 0.00 0.00 0.00 3.18
1087 2508 4.966787 TTGGAGGGTTGCGGTGCC 62.967 66.667 0.00 0.00 0.00 5.01
1309 2731 1.526917 GGTGAGCACAGCTGTTGGT 60.527 57.895 18.94 17.80 39.88 3.67
1317 2739 2.113986 AGCTGTTGGTGTCCTGCC 59.886 61.111 0.00 0.00 0.00 4.85
1318 2740 3.357079 GCTGTTGGTGTCCTGCCG 61.357 66.667 0.00 0.00 0.00 5.69
1390 2838 6.146216 CGATTAGAAGCGTGTCTTATCTGAT 58.854 40.000 11.86 0.00 33.47 2.90
1406 2854 1.395954 CTGATTGTCTGTCATGTGCGG 59.604 52.381 0.00 0.00 0.00 5.69
1427 2875 5.053145 CGGGGATCTAGATTCAGACAAAAG 58.947 45.833 13.21 0.00 0.00 2.27
1439 2887 4.144297 TCAGACAAAAGGATTCTGTTGGG 58.856 43.478 8.86 0.00 41.42 4.12
1455 2903 0.827089 TGGGGTGCAATGAACCACTG 60.827 55.000 14.80 0.00 42.03 3.66
1615 3211 9.915629 GATACTCCACTAAATTAGTAGATGTGG 57.084 37.037 5.23 3.21 43.22 4.17
1644 3240 6.752168 AGATGTGTTTCCCTTCAATTCAAAG 58.248 36.000 0.00 0.00 0.00 2.77
1766 3364 6.771267 CCTACCATTACAGTTATTTTCCCCTC 59.229 42.308 0.00 0.00 0.00 4.30
1778 3376 9.025041 AGTTATTTTCCCCTCAAATAGAAAGTG 57.975 33.333 0.00 0.00 29.79 3.16
1787 3385 6.209391 CCCTCAAATAGAAAGTGAACAACCAT 59.791 38.462 0.00 0.00 0.00 3.55
1792 3390 3.897239 AGAAAGTGAACAACCATGGACA 58.103 40.909 21.47 7.44 0.00 4.02
1821 3419 5.120674 GCTGGCAAAAATGAATTCTTGGTAC 59.879 40.000 7.05 0.00 0.00 3.34
1826 3424 9.435688 GGCAAAAATGAATTCTTGGTACTTATT 57.564 29.630 7.05 0.00 0.00 1.40
1867 3465 7.632680 GCGGGGGTACTTGTTACTATAGTTAAA 60.633 40.741 11.40 0.00 0.00 1.52
1868 3466 8.257306 CGGGGGTACTTGTTACTATAGTTAAAA 58.743 37.037 11.40 2.36 0.00 1.52
1910 3508 4.122776 GAGCTCCTGCGATTCATAAAGAA 58.877 43.478 0.87 0.00 45.42 2.52
1942 3540 3.316308 GGCTGAACTGAAAGAATGTGTGT 59.684 43.478 0.00 0.00 37.43 3.72
2212 3810 7.125659 TGGAGAGTGGTAATTCAGACAATCATA 59.874 37.037 0.00 0.00 31.06 2.15
2217 3815 9.739276 AGTGGTAATTCAGACAATCATAGAAAA 57.261 29.630 0.00 0.00 0.00 2.29
2218 3816 9.774742 GTGGTAATTCAGACAATCATAGAAAAC 57.225 33.333 0.00 0.00 0.00 2.43
2224 3822 9.956640 ATTCAGACAATCATAGAAAACTTCTCT 57.043 29.630 0.00 0.00 41.14 3.10
2239 3837 4.965814 ACTTCTCTCATTGACTTGAGCAA 58.034 39.130 0.00 0.00 42.37 3.91
2271 3869 8.837788 TTCATGATGTATAATAGCACTCTTGG 57.162 34.615 0.00 0.00 0.00 3.61
2333 3937 2.039879 AGGCACCCATCTAGTTTTCGTT 59.960 45.455 0.00 0.00 0.00 3.85
2366 3970 2.093447 GGATCCGTTTGAGGTCATCACT 60.093 50.000 0.00 0.00 37.77 3.41
2391 3995 9.874215 CTAATGCTGTCAAGTATGTCAATATTG 57.126 33.333 9.29 9.29 0.00 1.90
2444 4049 4.759782 ACACTTCTCCTGATCAAATACGG 58.240 43.478 0.00 0.00 0.00 4.02
2468 4073 4.119442 ACTGCTTTCCATGAATGCATTC 57.881 40.909 28.83 28.83 46.28 2.67
2483 4088 3.141398 TGCATTCCTTTCTCACTGACAC 58.859 45.455 0.00 0.00 0.00 3.67
2625 4238 9.220767 CTTACTATTTCAGTGCCTCTAAAACTT 57.779 33.333 0.00 0.00 38.24 2.66
2764 4377 3.364889 TCTCGTATACTTCCGCCAATG 57.635 47.619 0.56 0.00 0.00 2.82
2766 4379 0.865769 CGTATACTTCCGCCAATGCC 59.134 55.000 0.56 0.00 0.00 4.40
2958 4572 6.502136 AGTAAGCAGCCAAGAAGAATTTAC 57.498 37.500 0.00 0.00 0.00 2.01
2985 4599 7.441836 TCTCAATCTTTAGTTGTCTTGCAGTA 58.558 34.615 0.00 0.00 0.00 2.74
3164 4778 6.543831 GGGAAACATGAGCTAAAGTATGATGT 59.456 38.462 0.00 0.00 0.00 3.06
3165 4779 7.067494 GGGAAACATGAGCTAAAGTATGATGTT 59.933 37.037 0.00 0.00 34.78 2.71
3195 4809 3.658757 TTTTTGTTGCCTCATACAGCC 57.341 42.857 0.00 0.00 0.00 4.85
3203 4817 4.502105 TGCCTCATACAGCCTGATAAAA 57.498 40.909 0.00 0.00 0.00 1.52
3209 4823 6.238842 CCTCATACAGCCTGATAAAATTGTGG 60.239 42.308 0.00 0.00 0.00 4.17
3224 4838 7.662604 AAAATTGTGGCAATTCTCATCTTTC 57.337 32.000 7.44 0.00 0.00 2.62
3225 4839 4.789012 TTGTGGCAATTCTCATCTTTCC 57.211 40.909 0.00 0.00 0.00 3.13
3233 4847 6.601217 GGCAATTCTCATCTTTCCTACTTCTT 59.399 38.462 0.00 0.00 0.00 2.52
3235 4849 8.608317 GCAATTCTCATCTTTCCTACTTCTTAC 58.392 37.037 0.00 0.00 0.00 2.34
3236 4850 9.658799 CAATTCTCATCTTTCCTACTTCTTACA 57.341 33.333 0.00 0.00 0.00 2.41
3242 4857 9.621629 TCATCTTTCCTACTTCTTACACAAAAA 57.378 29.630 0.00 0.00 0.00 1.94
3253 4868 6.774354 TCTTACACAAAAATCAGGTACGTC 57.226 37.500 0.00 0.00 0.00 4.34
3328 4943 2.519013 GGGATGGAGCATTACCAATCC 58.481 52.381 0.00 0.00 40.93 3.01
3337 4952 3.635373 AGCATTACCAATCCAAGATGCAG 59.365 43.478 8.58 0.00 41.60 4.41
3349 4964 0.532573 AGATGCAGTACCCTGTGTCG 59.467 55.000 0.00 0.00 41.02 4.35
3646 5261 0.239347 GCATGAGCCACAACACTGAC 59.761 55.000 0.00 0.00 33.58 3.51
3662 5277 7.440255 ACAACACTGACAACTTATACAGGTAAC 59.560 37.037 0.00 0.00 35.08 2.50
3683 5298 5.712152 ACCTTATTTTGCTCCTGAAACTG 57.288 39.130 0.00 0.00 0.00 3.16
3719 5334 1.938016 GCTTGGTGCAATTGCCTGAAG 60.938 52.381 26.94 22.86 42.31 3.02
3756 5371 6.405538 TCTTTGCCACAGTTCAAAAAGAAAT 58.594 32.000 0.00 0.00 38.13 2.17
3765 5380 5.746245 CAGTTCAAAAAGAAATGCGGTTGTA 59.254 36.000 0.00 0.00 44.17 2.41
3804 5419 1.439644 GCCTAGAGACCCAGCTTCG 59.560 63.158 0.00 0.00 0.00 3.79
3825 5440 2.416547 GCATACCATACACATCGCATCC 59.583 50.000 0.00 0.00 0.00 3.51
3831 5446 2.000215 TACACATCGCATCCGTCGCT 62.000 55.000 0.00 0.00 35.54 4.93
3840 5455 1.525619 GCATCCGTCGCTTACAATACC 59.474 52.381 0.00 0.00 0.00 2.73
3846 5461 3.482436 CCGTCGCTTACAATACCGTTTTC 60.482 47.826 0.00 0.00 0.00 2.29
3895 5510 3.005554 GACATGTTCCATGTGAGTGAGG 58.994 50.000 14.12 0.00 31.52 3.86
3925 5540 4.175516 CTCTGTTCTGCTCTCTTGCTTAG 58.824 47.826 0.00 0.00 0.00 2.18
3927 5542 3.657634 TGTTCTGCTCTCTTGCTTAGTG 58.342 45.455 0.00 0.00 0.00 2.74
3930 5545 2.301296 TCTGCTCTCTTGCTTAGTGCTT 59.699 45.455 0.00 0.00 43.37 3.91
3931 5546 3.511540 TCTGCTCTCTTGCTTAGTGCTTA 59.488 43.478 0.00 0.00 43.37 3.09
3932 5547 3.589988 TGCTCTCTTGCTTAGTGCTTAC 58.410 45.455 0.00 0.00 43.37 2.34
3933 5548 3.259374 TGCTCTCTTGCTTAGTGCTTACT 59.741 43.478 0.00 0.00 43.37 2.24
3934 5549 4.462834 TGCTCTCTTGCTTAGTGCTTACTA 59.537 41.667 0.00 0.00 43.37 1.82
3935 5550 4.801516 GCTCTCTTGCTTAGTGCTTACTAC 59.198 45.833 0.00 0.00 43.37 2.73
3936 5551 5.393678 GCTCTCTTGCTTAGTGCTTACTACT 60.394 44.000 0.00 0.00 43.37 2.57
3937 5552 6.197364 TCTCTTGCTTAGTGCTTACTACTC 57.803 41.667 0.00 0.00 43.37 2.59
3938 5553 5.946972 TCTCTTGCTTAGTGCTTACTACTCT 59.053 40.000 0.00 0.00 43.37 3.24
3939 5554 6.094325 TCTCTTGCTTAGTGCTTACTACTCTC 59.906 42.308 0.00 0.00 43.37 3.20
3940 5555 5.710567 TCTTGCTTAGTGCTTACTACTCTCA 59.289 40.000 0.00 0.00 43.37 3.27
3945 5560 6.262273 GCTTAGTGCTTACTACTCTCAGATCT 59.738 42.308 0.00 0.00 38.95 2.75
3952 5567 8.706521 TGCTTACTACTCTCAGATCTTCTAGTA 58.293 37.037 0.00 0.22 0.00 1.82
3953 5568 9.204570 GCTTACTACTCTCAGATCTTCTAGTAG 57.795 40.741 22.23 22.23 38.35 2.57
3974 5589 5.681337 AGCTGAACTTGTAAGCTTCTTTC 57.319 39.130 0.00 0.46 44.79 2.62
3982 5597 5.241728 ACTTGTAAGCTTCTTTCCATTGTCC 59.758 40.000 0.00 0.00 0.00 4.02
3987 5602 3.009473 AGCTTCTTTCCATTGTCCTGCTA 59.991 43.478 0.00 0.00 0.00 3.49
4088 5703 6.127591 ACGAACATTACAGAGCAGTAGAGAAT 60.128 38.462 0.00 0.00 0.00 2.40
4114 5729 9.602568 TTTTCAGCTTTTCCATACGTGTATATA 57.397 29.630 0.00 0.00 0.00 0.86
4166 5782 5.833406 TTTCATGTGCTGAACTGAAAGAA 57.167 34.783 8.44 0.00 43.54 2.52
4168 5784 5.833406 TCATGTGCTGAACTGAAAGAAAA 57.167 34.783 0.00 0.00 37.43 2.29
4186 5802 6.076981 AGAAAACTTTGATGCTAACTGTGG 57.923 37.500 0.00 0.00 0.00 4.17
4211 5827 2.161855 GATCATGGCAGTGACAAACCA 58.838 47.619 0.77 0.00 36.43 3.67
4271 5887 2.049985 GACGGATCGATCCTGCGG 60.050 66.667 35.31 24.42 44.93 5.69
4280 5896 2.361610 ATCCTGCGGGCCAAACTG 60.362 61.111 6.73 0.00 0.00 3.16
4414 6041 5.924475 TCTGAATTTCTCTGAACCGTTTC 57.076 39.130 0.00 0.00 0.00 2.78
4489 6116 3.741476 GGCGCCTTCAACTGCCAG 61.741 66.667 22.15 0.00 46.76 4.85
4534 6161 3.118592 GGAAGAAGAACCTCATCCACGAT 60.119 47.826 0.00 0.00 34.09 3.73
4590 6217 4.373116 GGACGTGAGCCGCCTTCA 62.373 66.667 0.00 0.00 41.42 3.02
4704 6331 4.167268 GTGATCTTGGACTAACTGACGAC 58.833 47.826 0.00 0.00 0.00 4.34
4705 6332 4.079970 TGATCTTGGACTAACTGACGACT 58.920 43.478 0.00 0.00 0.00 4.18
4708 6335 3.252701 TCTTGGACTAACTGACGACTGAC 59.747 47.826 0.00 0.00 0.00 3.51
4745 6372 7.500559 CCTTTTTCTTCTTCTTTCTCTTCAGGA 59.499 37.037 0.00 0.00 0.00 3.86
4915 6542 2.657237 GGTGACGGAGGTGAGGTG 59.343 66.667 0.00 0.00 0.00 4.00
5213 6891 2.070861 CAGACGTTGCCGCTAGTTC 58.929 57.895 0.00 0.00 37.70 3.01
5367 7052 8.534954 TTTCTCTTACTACTATGTATGTGCCT 57.465 34.615 0.00 0.00 0.00 4.75
5371 7056 6.605995 TCTTACTACTATGTATGTGCCTGTGT 59.394 38.462 0.00 0.00 0.00 3.72
5376 7061 2.340210 TGTATGTGCCTGTGTGTTGT 57.660 45.000 0.00 0.00 0.00 3.32
5379 7064 1.024271 ATGTGCCTGTGTGTTGTCAC 58.976 50.000 0.00 0.00 44.08 3.67
5556 7242 1.749258 GGGTCGATTGCCAGGGAAC 60.749 63.158 0.00 0.00 0.00 3.62
5640 7327 8.445275 TGGTAAAATATGTATGTGCCTGTAAG 57.555 34.615 0.00 0.00 0.00 2.34
5655 7342 5.355071 TGCCTGTAAGTGATCTGCTTTATTG 59.645 40.000 8.07 0.00 0.00 1.90
5752 7439 3.866883 AAAAATCGATGTTGGCCGAAT 57.133 38.095 0.45 0.00 38.36 3.34
5821 7508 2.201708 GCTAGGGCGGAGAGTACCC 61.202 68.421 0.00 0.00 44.62 3.69
5822 7509 1.229359 CTAGGGCGGAGAGTACCCA 59.771 63.158 0.00 0.00 46.88 4.51
5923 7610 5.880332 AGTACAATGGTGATCAATGGTGTAC 59.120 40.000 21.81 21.81 40.08 2.90
5925 7612 2.799126 TGGTGATCAATGGTGTACCC 57.201 50.000 0.00 0.00 34.29 3.69
5968 7655 0.389426 GTGCATGTCGACTAACCCGT 60.389 55.000 17.92 0.00 0.00 5.28
6053 7740 0.741915 AAGAGTCCTCCGCGATCTTC 59.258 55.000 8.23 0.00 0.00 2.87
6151 7838 1.696063 GATGCATGGTGGGCTACAAT 58.304 50.000 2.46 0.00 0.00 2.71
6173 7860 1.592223 GTCTGGTGGGAGACTTCCG 59.408 63.158 0.00 0.00 45.04 4.30
6180 7867 3.692406 GGAGACTTCCGGTGGCGT 61.692 66.667 0.00 0.00 32.79 5.68
6205 7892 2.440147 CCTGGGTTCATGGCACCA 59.560 61.111 14.77 9.38 35.80 4.17
6221 7908 1.281867 CACCATCACTAGCCCCTGAAA 59.718 52.381 0.00 0.00 0.00 2.69
6222 7909 2.092212 CACCATCACTAGCCCCTGAAAT 60.092 50.000 0.00 0.00 0.00 2.17
6264 7952 1.686052 TGGACTGTGGTCAAATTTGGC 59.314 47.619 17.90 16.26 43.77 4.52
6276 7964 2.182614 AATTTGGCGTGCCGTCTTCG 62.183 55.000 6.37 0.00 39.42 3.79
6288 7976 0.708370 CGTCTTCGGAATGTGTGACG 59.292 55.000 12.84 12.84 40.55 4.35
6293 7981 0.242825 TCGGAATGTGTGACGAGGTC 59.757 55.000 0.00 0.00 0.00 3.85
6301 7989 1.067212 GTGTGACGAGGTCTTGACAGT 59.933 52.381 3.08 0.07 33.15 3.55
6303 7991 2.223735 TGTGACGAGGTCTTGACAGTTC 60.224 50.000 3.08 0.00 33.15 3.01
6306 7994 0.388649 CGAGGTCTTGACAGTTCCCG 60.389 60.000 3.08 0.00 0.00 5.14
6307 7995 0.670854 GAGGTCTTGACAGTTCCCGC 60.671 60.000 3.08 0.00 0.00 6.13
6308 7996 1.122019 AGGTCTTGACAGTTCCCGCT 61.122 55.000 3.08 0.00 0.00 5.52
6309 7997 0.951040 GGTCTTGACAGTTCCCGCTG 60.951 60.000 3.08 0.00 41.92 5.18
6310 7998 0.033504 GTCTTGACAGTTCCCGCTGA 59.966 55.000 0.00 0.00 39.62 4.26
6311 7999 0.976641 TCTTGACAGTTCCCGCTGAT 59.023 50.000 0.00 0.00 39.62 2.90
6312 8000 1.066858 TCTTGACAGTTCCCGCTGATC 60.067 52.381 0.00 0.00 39.62 2.92
6313 8001 0.036388 TTGACAGTTCCCGCTGATCC 60.036 55.000 0.00 0.00 39.62 3.36
6314 8002 1.153349 GACAGTTCCCGCTGATCCC 60.153 63.158 0.00 0.00 39.62 3.85
6315 8003 1.613630 ACAGTTCCCGCTGATCCCT 60.614 57.895 0.00 0.00 39.62 4.20
6316 8004 1.153289 CAGTTCCCGCTGATCCCTG 60.153 63.158 0.00 0.00 38.70 4.45
6317 8005 1.306141 AGTTCCCGCTGATCCCTGA 60.306 57.895 0.00 0.00 0.00 3.86
6318 8006 0.909610 AGTTCCCGCTGATCCCTGAA 60.910 55.000 0.00 0.00 0.00 3.02
6319 8007 0.035439 GTTCCCGCTGATCCCTGAAA 60.035 55.000 0.00 0.00 0.00 2.69
6320 8008 0.253044 TTCCCGCTGATCCCTGAAAG 59.747 55.000 0.00 0.00 0.00 2.62
6321 8009 0.617535 TCCCGCTGATCCCTGAAAGA 60.618 55.000 0.00 0.00 34.07 2.52
6322 8010 0.253044 CCCGCTGATCCCTGAAAGAA 59.747 55.000 0.00 0.00 34.07 2.52
6323 8011 1.133976 CCCGCTGATCCCTGAAAGAAT 60.134 52.381 0.00 0.00 34.07 2.40
6324 8012 1.945394 CCGCTGATCCCTGAAAGAATG 59.055 52.381 0.00 0.00 34.07 2.67
6325 8013 1.332997 CGCTGATCCCTGAAAGAATGC 59.667 52.381 0.00 0.00 34.07 3.56
6326 8014 1.332997 GCTGATCCCTGAAAGAATGCG 59.667 52.381 0.00 0.00 34.07 4.73
6327 8015 2.636830 CTGATCCCTGAAAGAATGCGT 58.363 47.619 0.00 0.00 34.07 5.24
6328 8016 2.353889 CTGATCCCTGAAAGAATGCGTG 59.646 50.000 0.00 0.00 34.07 5.34
6329 8017 1.064654 GATCCCTGAAAGAATGCGTGC 59.935 52.381 0.00 0.00 34.07 5.34
6330 8018 0.960364 TCCCTGAAAGAATGCGTGCC 60.960 55.000 0.00 0.00 34.07 5.01
6331 8019 1.243342 CCCTGAAAGAATGCGTGCCA 61.243 55.000 0.00 0.00 34.07 4.92
6332 8020 0.813184 CCTGAAAGAATGCGTGCCAT 59.187 50.000 0.00 0.00 34.07 4.40
6333 8021 1.202222 CCTGAAAGAATGCGTGCCATC 60.202 52.381 0.00 0.00 34.07 3.51
6334 8022 1.741706 CTGAAAGAATGCGTGCCATCT 59.258 47.619 0.00 0.00 34.07 2.90
6335 8023 2.161855 TGAAAGAATGCGTGCCATCTT 58.838 42.857 4.09 4.09 31.43 2.40
6336 8024 3.342719 TGAAAGAATGCGTGCCATCTTA 58.657 40.909 8.92 0.00 31.43 2.10
6337 8025 3.947196 TGAAAGAATGCGTGCCATCTTAT 59.053 39.130 8.92 2.33 31.43 1.73
6338 8026 4.398988 TGAAAGAATGCGTGCCATCTTATT 59.601 37.500 8.92 0.00 31.43 1.40
6339 8027 4.989279 AAGAATGCGTGCCATCTTATTT 57.011 36.364 7.26 0.00 31.43 1.40
6340 8028 4.989279 AGAATGCGTGCCATCTTATTTT 57.011 36.364 0.00 0.00 31.43 1.82
6341 8029 5.329035 AGAATGCGTGCCATCTTATTTTT 57.671 34.783 0.00 0.00 31.43 1.94
6342 8030 6.449635 AGAATGCGTGCCATCTTATTTTTA 57.550 33.333 0.00 0.00 31.43 1.52
6343 8031 6.498304 AGAATGCGTGCCATCTTATTTTTAG 58.502 36.000 0.00 0.00 31.43 1.85
6344 8032 4.630894 TGCGTGCCATCTTATTTTTAGG 57.369 40.909 0.00 0.00 0.00 2.69
6345 8033 3.181491 TGCGTGCCATCTTATTTTTAGGC 60.181 43.478 0.00 0.00 42.32 3.93
6350 8038 5.852282 GCCATCTTATTTTTAGGCAAGGA 57.148 39.130 0.00 0.00 41.63 3.36
6351 8039 6.410942 GCCATCTTATTTTTAGGCAAGGAT 57.589 37.500 0.00 0.00 41.63 3.24
6352 8040 6.218746 GCCATCTTATTTTTAGGCAAGGATG 58.781 40.000 0.00 0.00 41.63 3.51
6353 8041 6.739565 GCCATCTTATTTTTAGGCAAGGATGG 60.740 42.308 12.16 12.16 41.63 3.51
6354 8042 6.239402 CCATCTTATTTTTAGGCAAGGATGGG 60.239 42.308 0.00 0.00 33.20 4.00
6355 8043 5.208121 TCTTATTTTTAGGCAAGGATGGGG 58.792 41.667 0.00 0.00 0.00 4.96
6356 8044 3.774842 ATTTTTAGGCAAGGATGGGGA 57.225 42.857 0.00 0.00 0.00 4.81
6357 8045 3.551635 TTTTTAGGCAAGGATGGGGAA 57.448 42.857 0.00 0.00 0.00 3.97
6358 8046 3.551635 TTTTAGGCAAGGATGGGGAAA 57.448 42.857 0.00 0.00 0.00 3.13
6359 8047 3.551635 TTTAGGCAAGGATGGGGAAAA 57.448 42.857 0.00 0.00 0.00 2.29
6360 8048 3.551635 TTAGGCAAGGATGGGGAAAAA 57.448 42.857 0.00 0.00 0.00 1.94
6382 8070 7.693969 AAAAACTCAGGGAGTCATATTGAAG 57.306 36.000 0.00 0.00 42.59 3.02
6383 8071 4.414337 ACTCAGGGAGTCATATTGAAGC 57.586 45.455 0.00 0.00 38.71 3.86
6384 8072 3.776969 ACTCAGGGAGTCATATTGAAGCA 59.223 43.478 0.00 0.00 38.71 3.91
6385 8073 4.411540 ACTCAGGGAGTCATATTGAAGCAT 59.588 41.667 0.00 0.00 38.71 3.79
6386 8074 5.104193 ACTCAGGGAGTCATATTGAAGCATT 60.104 40.000 0.00 0.00 38.71 3.56
6387 8075 5.128205 TCAGGGAGTCATATTGAAGCATTG 58.872 41.667 0.00 0.00 0.00 2.82
6388 8076 4.277672 CAGGGAGTCATATTGAAGCATTGG 59.722 45.833 0.00 0.00 0.00 3.16
6389 8077 3.005155 GGGAGTCATATTGAAGCATTGGC 59.995 47.826 0.00 0.00 41.61 4.52
6390 8078 3.005155 GGAGTCATATTGAAGCATTGGCC 59.995 47.826 0.00 0.00 42.56 5.36
6391 8079 3.633525 GAGTCATATTGAAGCATTGGCCA 59.366 43.478 0.00 0.00 42.56 5.36
6392 8080 3.635373 AGTCATATTGAAGCATTGGCCAG 59.365 43.478 5.11 0.00 42.56 4.85
6393 8081 2.363038 TCATATTGAAGCATTGGCCAGC 59.637 45.455 5.11 7.31 42.56 4.85
6394 8082 1.849977 TATTGAAGCATTGGCCAGCA 58.150 45.000 18.35 0.00 42.56 4.41
6395 8083 0.978151 ATTGAAGCATTGGCCAGCAA 59.022 45.000 18.35 11.47 42.56 3.91
6396 8084 0.319083 TTGAAGCATTGGCCAGCAAG 59.681 50.000 18.35 5.68 42.56 4.01
6397 8085 0.540133 TGAAGCATTGGCCAGCAAGA 60.540 50.000 18.35 0.00 42.56 3.02
6398 8086 0.822164 GAAGCATTGGCCAGCAAGAT 59.178 50.000 18.35 0.00 42.56 2.40
6399 8087 2.026641 GAAGCATTGGCCAGCAAGATA 58.973 47.619 18.35 0.00 42.56 1.98
6400 8088 2.148446 AGCATTGGCCAGCAAGATAA 57.852 45.000 18.35 0.00 42.56 1.75
6401 8089 2.459644 AGCATTGGCCAGCAAGATAAA 58.540 42.857 18.35 0.00 42.56 1.40
6402 8090 2.429610 AGCATTGGCCAGCAAGATAAAG 59.570 45.455 18.35 0.00 42.56 1.85
6403 8091 2.817901 CATTGGCCAGCAAGATAAAGC 58.182 47.619 5.11 0.00 0.00 3.51
6404 8092 0.810648 TTGGCCAGCAAGATAAAGCG 59.189 50.000 5.11 0.00 35.48 4.68
6405 8093 0.035534 TGGCCAGCAAGATAAAGCGA 60.036 50.000 0.00 0.00 35.48 4.93
6406 8094 0.378610 GGCCAGCAAGATAAAGCGAC 59.621 55.000 0.00 0.00 35.48 5.19
6407 8095 0.026803 GCCAGCAAGATAAAGCGACG 59.973 55.000 0.00 0.00 35.48 5.12
6408 8096 1.640428 CCAGCAAGATAAAGCGACGA 58.360 50.000 0.00 0.00 35.48 4.20
6409 8097 1.324736 CCAGCAAGATAAAGCGACGAC 59.675 52.381 0.00 0.00 35.48 4.34
6410 8098 1.324736 CAGCAAGATAAAGCGACGACC 59.675 52.381 0.00 0.00 35.48 4.79
6411 8099 0.651031 GCAAGATAAAGCGACGACCC 59.349 55.000 0.00 0.00 0.00 4.46
6412 8100 2.004583 CAAGATAAAGCGACGACCCA 57.995 50.000 0.00 0.00 0.00 4.51
6413 8101 2.343101 CAAGATAAAGCGACGACCCAA 58.657 47.619 0.00 0.00 0.00 4.12
6414 8102 2.295253 AGATAAAGCGACGACCCAAG 57.705 50.000 0.00 0.00 0.00 3.61
6415 8103 1.549170 AGATAAAGCGACGACCCAAGT 59.451 47.619 0.00 0.00 0.00 3.16
6416 8104 1.659098 GATAAAGCGACGACCCAAGTG 59.341 52.381 0.00 0.00 0.00 3.16
6417 8105 0.675083 TAAAGCGACGACCCAAGTGA 59.325 50.000 0.00 0.00 0.00 3.41
6418 8106 0.878961 AAAGCGACGACCCAAGTGAC 60.879 55.000 0.00 0.00 0.00 3.67
6419 8107 2.023414 AAGCGACGACCCAAGTGACA 62.023 55.000 0.00 0.00 0.00 3.58
6420 8108 2.308039 GCGACGACCCAAGTGACAC 61.308 63.158 0.00 0.00 0.00 3.67
6421 8109 1.066752 CGACGACCCAAGTGACACA 59.933 57.895 8.59 0.00 0.00 3.72
6422 8110 1.213094 CGACGACCCAAGTGACACAC 61.213 60.000 8.59 0.00 34.10 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 0.595053 TATGCGAGCGCTTGAGTAGC 60.595 55.000 29.00 18.11 46.83 3.58
13 14 2.057503 ATATGCGAGCGCTTGAGTAG 57.942 50.000 29.00 8.98 42.51 2.57
14 15 2.509052 AATATGCGAGCGCTTGAGTA 57.491 45.000 29.00 18.55 42.51 2.59
15 16 1.594862 GAAATATGCGAGCGCTTGAGT 59.405 47.619 29.00 16.99 42.51 3.41
16 17 1.396440 CGAAATATGCGAGCGCTTGAG 60.396 52.381 29.00 15.84 42.51 3.02
17 18 0.576798 CGAAATATGCGAGCGCTTGA 59.423 50.000 29.00 13.55 42.51 3.02
18 19 0.576798 TCGAAATATGCGAGCGCTTG 59.423 50.000 20.86 20.86 42.51 4.01
19 20 1.502231 ATCGAAATATGCGAGCGCTT 58.498 45.000 13.26 12.10 41.49 4.68
20 21 1.986378 GTATCGAAATATGCGAGCGCT 59.014 47.619 11.27 11.27 41.49 5.92
21 22 1.265923 CGTATCGAAATATGCGAGCGC 60.266 52.381 8.08 8.08 41.49 5.92
22 23 1.317611 CCGTATCGAAATATGCGAGCG 59.682 52.381 14.83 14.83 41.49 5.03
23 24 2.592194 TCCGTATCGAAATATGCGAGC 58.408 47.619 6.99 0.00 41.49 5.03
24 25 5.570262 TTTTCCGTATCGAAATATGCGAG 57.430 39.130 6.99 0.00 41.49 5.03
25 26 5.050634 CCTTTTTCCGTATCGAAATATGCGA 60.051 40.000 3.77 3.77 42.48 5.10
26 27 5.137403 CCTTTTTCCGTATCGAAATATGCG 58.863 41.667 0.00 0.00 35.12 4.73
27 28 5.907391 CACCTTTTTCCGTATCGAAATATGC 59.093 40.000 0.00 0.00 32.00 3.14
28 29 6.905076 CACACCTTTTTCCGTATCGAAATATG 59.095 38.462 0.00 0.00 32.00 1.78
29 30 6.457799 GCACACCTTTTTCCGTATCGAAATAT 60.458 38.462 0.00 0.00 32.00 1.28
30 31 5.163834 GCACACCTTTTTCCGTATCGAAATA 60.164 40.000 0.00 0.00 32.00 1.40
31 32 4.379082 GCACACCTTTTTCCGTATCGAAAT 60.379 41.667 0.00 0.00 32.00 2.17
32 33 3.058777 GCACACCTTTTTCCGTATCGAAA 60.059 43.478 0.00 0.00 0.00 3.46
33 34 2.481185 GCACACCTTTTTCCGTATCGAA 59.519 45.455 0.00 0.00 0.00 3.71
34 35 2.070783 GCACACCTTTTTCCGTATCGA 58.929 47.619 0.00 0.00 0.00 3.59
35 36 2.073816 AGCACACCTTTTTCCGTATCG 58.926 47.619 0.00 0.00 0.00 2.92
36 37 2.093783 CGAGCACACCTTTTTCCGTATC 59.906 50.000 0.00 0.00 0.00 2.24
37 38 2.073816 CGAGCACACCTTTTTCCGTAT 58.926 47.619 0.00 0.00 0.00 3.06
38 39 1.202557 ACGAGCACACCTTTTTCCGTA 60.203 47.619 0.00 0.00 0.00 4.02
39 40 0.463116 ACGAGCACACCTTTTTCCGT 60.463 50.000 0.00 0.00 0.00 4.69
40 41 1.193874 GTACGAGCACACCTTTTTCCG 59.806 52.381 0.00 0.00 0.00 4.30
41 42 1.534163 GGTACGAGCACACCTTTTTCC 59.466 52.381 0.00 0.00 0.00 3.13
42 43 2.490991 AGGTACGAGCACACCTTTTTC 58.509 47.619 0.00 0.00 42.68 2.29
43 44 2.632987 AGGTACGAGCACACCTTTTT 57.367 45.000 0.00 0.00 42.68 1.94
44 45 2.631545 AGTAGGTACGAGCACACCTTTT 59.368 45.455 0.00 0.00 42.68 2.27
45 46 2.029290 CAGTAGGTACGAGCACACCTTT 60.029 50.000 0.00 0.00 42.68 3.11
46 47 1.544691 CAGTAGGTACGAGCACACCTT 59.455 52.381 0.00 0.00 42.68 3.50
47 48 1.174783 CAGTAGGTACGAGCACACCT 58.825 55.000 0.00 0.00 46.88 4.00
48 49 0.886563 ACAGTAGGTACGAGCACACC 59.113 55.000 0.00 0.00 34.86 4.16
49 50 2.477525 GCTACAGTAGGTACGAGCACAC 60.478 54.545 9.74 0.00 34.01 3.82
50 51 1.741706 GCTACAGTAGGTACGAGCACA 59.258 52.381 9.74 0.00 34.01 4.57
51 52 1.065251 GGCTACAGTAGGTACGAGCAC 59.935 57.143 9.74 0.00 34.87 4.40
52 53 1.340308 TGGCTACAGTAGGTACGAGCA 60.340 52.381 9.74 0.00 34.87 4.26
53 54 1.334243 CTGGCTACAGTAGGTACGAGC 59.666 57.143 9.74 0.00 39.92 5.03
54 55 1.334243 GCTGGCTACAGTAGGTACGAG 59.666 57.143 9.74 1.26 46.62 4.18
55 56 1.064906 AGCTGGCTACAGTAGGTACGA 60.065 52.381 9.74 0.00 46.62 3.43
56 57 1.390565 AGCTGGCTACAGTAGGTACG 58.609 55.000 9.74 0.00 46.62 3.67
57 58 2.101082 GGAAGCTGGCTACAGTAGGTAC 59.899 54.545 9.74 0.00 46.62 3.34
58 59 2.291996 TGGAAGCTGGCTACAGTAGGTA 60.292 50.000 9.74 0.00 46.62 3.08
59 60 1.196012 GGAAGCTGGCTACAGTAGGT 58.804 55.000 9.74 0.00 46.62 3.08
60 61 1.195115 TGGAAGCTGGCTACAGTAGG 58.805 55.000 9.74 0.00 46.62 3.18
61 62 4.881019 ATATGGAAGCTGGCTACAGTAG 57.119 45.455 2.85 2.85 46.62 2.57
62 63 4.262036 CGAATATGGAAGCTGGCTACAGTA 60.262 45.833 0.00 0.00 46.62 2.74
63 64 3.493350 CGAATATGGAAGCTGGCTACAGT 60.493 47.826 0.00 0.00 46.62 3.55
65 66 2.806745 GCGAATATGGAAGCTGGCTACA 60.807 50.000 0.00 0.00 0.00 2.74
66 67 1.801178 GCGAATATGGAAGCTGGCTAC 59.199 52.381 0.00 0.00 0.00 3.58
67 68 1.416030 TGCGAATATGGAAGCTGGCTA 59.584 47.619 0.00 0.00 0.00 3.93
68 69 0.181114 TGCGAATATGGAAGCTGGCT 59.819 50.000 0.00 0.00 0.00 4.75
69 70 1.068748 CATGCGAATATGGAAGCTGGC 60.069 52.381 0.00 0.00 0.00 4.85
70 71 1.068748 GCATGCGAATATGGAAGCTGG 60.069 52.381 0.00 0.00 0.00 4.85
71 72 1.605232 TGCATGCGAATATGGAAGCTG 59.395 47.619 14.09 0.00 0.00 4.24
72 73 1.971481 TGCATGCGAATATGGAAGCT 58.029 45.000 14.09 0.00 0.00 3.74
73 74 2.227149 TCATGCATGCGAATATGGAAGC 59.773 45.455 22.25 0.00 32.05 3.86
74 75 3.119955 CCTCATGCATGCGAATATGGAAG 60.120 47.826 22.25 9.50 32.05 3.46
75 76 2.815503 CCTCATGCATGCGAATATGGAA 59.184 45.455 22.25 0.00 32.05 3.53
76 77 2.429478 CCTCATGCATGCGAATATGGA 58.571 47.619 22.25 0.10 32.84 3.41
77 78 1.471287 CCCTCATGCATGCGAATATGG 59.529 52.381 22.25 8.08 0.00 2.74
78 79 1.471287 CCCCTCATGCATGCGAATATG 59.529 52.381 22.25 11.16 0.00 1.78
79 80 1.615116 CCCCCTCATGCATGCGAATAT 60.615 52.381 22.25 0.00 0.00 1.28
80 81 0.250858 CCCCCTCATGCATGCGAATA 60.251 55.000 22.25 3.20 0.00 1.75
81 82 1.529948 CCCCCTCATGCATGCGAAT 60.530 57.895 22.25 0.00 0.00 3.34
82 83 2.124193 CCCCCTCATGCATGCGAA 60.124 61.111 22.25 3.99 0.00 4.70
445 446 1.067060 TGGATCGAATGAACTCGCGAT 59.933 47.619 10.36 0.00 45.07 4.58
446 447 0.454196 TGGATCGAATGAACTCGCGA 59.546 50.000 9.26 9.26 38.73 5.87
447 448 0.572590 GTGGATCGAATGAACTCGCG 59.427 55.000 0.00 0.00 38.73 5.87
448 449 0.931005 GGTGGATCGAATGAACTCGC 59.069 55.000 0.00 0.00 38.73 5.03
449 450 2.293677 TGGTGGATCGAATGAACTCG 57.706 50.000 0.00 0.00 40.25 4.18
450 451 3.181506 GCTTTGGTGGATCGAATGAACTC 60.182 47.826 0.00 0.00 0.00 3.01
451 452 2.749621 GCTTTGGTGGATCGAATGAACT 59.250 45.455 0.00 0.00 0.00 3.01
452 453 2.487762 TGCTTTGGTGGATCGAATGAAC 59.512 45.455 0.00 0.00 0.00 3.18
458 459 2.291365 CATCATGCTTTGGTGGATCGA 58.709 47.619 0.00 0.00 32.40 3.59
469 470 1.742880 ACACGCTCGCATCATGCTT 60.743 52.632 8.30 0.00 42.25 3.91
471 472 2.022346 CACACGCTCGCATCATGC 59.978 61.111 0.00 0.00 40.69 4.06
497 498 7.945033 TTTCTTTTTCAATACAAGGCATGTC 57.055 32.000 0.00 0.00 42.70 3.06
507 508 7.766738 TGTTCCCCAACTTTTCTTTTTCAATAC 59.233 33.333 0.00 0.00 33.17 1.89
554 555 7.196331 AGAAGAAAACAAGACCAGAAATTTCG 58.804 34.615 12.42 7.63 32.21 3.46
557 558 9.803315 GTTTAGAAGAAAACAAGACCAGAAATT 57.197 29.630 0.00 0.00 38.85 1.82
558 559 8.966868 TGTTTAGAAGAAAACAAGACCAGAAAT 58.033 29.630 0.00 0.00 44.23 2.17
579 580 7.382759 GTGGAAATGCCTAAAATTTCGTGTTTA 59.617 33.333 0.00 0.00 42.45 2.01
582 583 5.227152 GTGGAAATGCCTAAAATTTCGTGT 58.773 37.500 0.00 0.00 42.45 4.49
596 597 1.657751 GGAAGCGGAGGTGGAAATGC 61.658 60.000 0.00 0.00 39.47 3.56
610 762 4.321527 CCAAATCAAACTCTCCTTGGAAGC 60.322 45.833 0.00 0.00 36.26 3.86
632 784 4.425577 AAGACATGAAGTTTCGAATGCC 57.574 40.909 0.00 0.00 0.00 4.40
664 816 2.693267 AGAAGCGGAAGTGATTACCC 57.307 50.000 0.00 0.00 0.00 3.69
683 838 3.610040 ATGCAGATTCTCACCGTGTAA 57.390 42.857 0.00 0.00 0.00 2.41
684 839 3.521560 GAATGCAGATTCTCACCGTGTA 58.478 45.455 0.00 0.00 35.90 2.90
685 840 2.350522 GAATGCAGATTCTCACCGTGT 58.649 47.619 0.00 0.00 35.90 4.49
687 842 1.204704 TCGAATGCAGATTCTCACCGT 59.795 47.619 0.00 0.00 36.56 4.83
688 843 1.926561 TCGAATGCAGATTCTCACCG 58.073 50.000 0.00 0.00 36.56 4.94
692 855 4.187694 AGAGGTTTCGAATGCAGATTCTC 58.812 43.478 0.00 0.00 36.56 2.87
693 856 4.213564 AGAGGTTTCGAATGCAGATTCT 57.786 40.909 0.00 0.00 36.56 2.40
746 909 4.302455 GCACACTCTATCTTCATGCGTAT 58.698 43.478 0.00 0.00 0.00 3.06
750 913 1.260033 GCGCACACTCTATCTTCATGC 59.740 52.381 0.30 0.00 0.00 4.06
755 918 0.243907 ACACGCGCACACTCTATCTT 59.756 50.000 5.73 0.00 0.00 2.40
756 919 1.092348 TACACGCGCACACTCTATCT 58.908 50.000 5.73 0.00 0.00 1.98
764 927 3.439895 TCCTATAAATACACGCGCACA 57.560 42.857 5.73 0.00 0.00 4.57
775 938 4.392940 GCACCTGCACTCATCCTATAAAT 58.607 43.478 0.00 0.00 41.59 1.40
788 951 1.434555 TTACATACACGCACCTGCAC 58.565 50.000 0.00 0.00 42.21 4.57
793 956 3.485216 GCAGATGTTTACATACACGCACC 60.485 47.826 0.00 0.00 36.57 5.01
814 977 2.093972 TTCAAACACGCTACAAACGC 57.906 45.000 0.00 0.00 0.00 4.84
840 1003 4.057428 GCCTCCAGCGTCGTGTCT 62.057 66.667 0.00 0.00 0.00 3.41
851 1512 1.034838 AAACGTTTGTGCTGCCTCCA 61.035 50.000 13.81 0.00 0.00 3.86
852 1513 0.317854 GAAACGTTTGTGCTGCCTCC 60.318 55.000 20.10 0.00 0.00 4.30
867 1528 3.265791 AGAGGTGATCTGCAATCGAAAC 58.734 45.455 0.00 0.00 36.69 2.78
914 2324 1.534235 CCCCCGGGAGTAGAGATGG 60.534 68.421 26.32 7.24 37.50 3.51
1057 2478 2.009774 CCCTCCAATCAAAGCACGTAG 58.990 52.381 0.00 0.00 0.00 3.51
1087 2508 2.058595 ACCGTCATCTTCCTCCCCG 61.059 63.158 0.00 0.00 0.00 5.73
1298 2720 1.526917 GCAGGACACCAACAGCTGT 60.527 57.895 15.25 15.25 0.00 4.40
1299 2721 2.263741 GGCAGGACACCAACAGCTG 61.264 63.158 13.48 13.48 0.00 4.24
1300 2722 2.113986 GGCAGGACACCAACAGCT 59.886 61.111 0.00 0.00 0.00 4.24
1309 2731 2.203788 AAGGGAGACGGCAGGACA 60.204 61.111 0.00 0.00 0.00 4.02
1312 2734 2.581354 CTGAAGGGAGACGGCAGG 59.419 66.667 0.00 0.00 0.00 4.85
1315 2737 2.125350 CAGCTGAAGGGAGACGGC 60.125 66.667 8.42 0.00 38.51 5.68
1317 2739 1.532868 CAAAACAGCTGAAGGGAGACG 59.467 52.381 23.35 0.00 0.00 4.18
1318 2740 2.550180 GACAAAACAGCTGAAGGGAGAC 59.450 50.000 23.35 1.82 0.00 3.36
1390 2838 1.302431 CCCCGCACATGACAGACAA 60.302 57.895 0.00 0.00 0.00 3.18
1406 2854 6.240549 TCCTTTTGTCTGAATCTAGATCCC 57.759 41.667 5.51 2.02 0.00 3.85
1427 2875 1.205417 CATTGCACCCCAACAGAATCC 59.795 52.381 0.00 0.00 35.99 3.01
1439 2887 0.318955 GCACAGTGGTTCATTGCACC 60.319 55.000 1.84 0.00 33.24 5.01
1568 3016 9.720769 AGTATCGAGATTTTTCCTTCTGTTTTA 57.279 29.630 0.00 0.00 0.00 1.52
1578 3027 8.664211 ATTTAGTGGAGTATCGAGATTTTTCC 57.336 34.615 0.00 0.00 34.37 3.13
1615 3211 7.710475 TGAATTGAAGGGAAACACATCTTTTTC 59.290 33.333 0.00 0.00 0.00 2.29
1631 3227 8.405531 TCTTGAACAGTAACTTTGAATTGAAGG 58.594 33.333 3.89 0.00 0.00 3.46
1644 3240 6.424207 CCCAACTACTCTTCTTGAACAGTAAC 59.576 42.308 1.45 0.00 0.00 2.50
1766 3364 6.863126 GTCCATGGTTGTTCACTTTCTATTTG 59.137 38.462 12.58 0.00 0.00 2.32
1778 3376 1.000274 GCCAAGTGTCCATGGTTGTTC 60.000 52.381 12.58 0.00 39.00 3.18
1787 3385 0.685785 TTTTGCCAGCCAAGTGTCCA 60.686 50.000 0.00 0.00 34.34 4.02
1792 3390 3.775261 ATTCATTTTTGCCAGCCAAGT 57.225 38.095 0.00 0.00 34.34 3.16
1836 3434 1.777941 AACAAGTACCCCCGCAAAAA 58.222 45.000 0.00 0.00 0.00 1.94
1837 3435 2.158638 AGTAACAAGTACCCCCGCAAAA 60.159 45.455 0.00 0.00 32.58 2.44
1838 3436 1.420891 AGTAACAAGTACCCCCGCAAA 59.579 47.619 0.00 0.00 32.58 3.68
1839 3437 1.058284 AGTAACAAGTACCCCCGCAA 58.942 50.000 0.00 0.00 32.58 4.85
1840 3438 1.935799 TAGTAACAAGTACCCCCGCA 58.064 50.000 0.00 0.00 32.58 5.69
1841 3439 3.638627 ACTATAGTAACAAGTACCCCCGC 59.361 47.826 2.75 0.00 32.58 6.13
1842 3440 5.859205 AACTATAGTAACAAGTACCCCCG 57.141 43.478 5.65 0.00 32.58 5.73
1867 3465 7.724374 AGCTCCCTCCTAATTCTAGGTATATT 58.276 38.462 0.00 0.00 44.70 1.28
1868 3466 7.305402 AGCTCCCTCCTAATTCTAGGTATAT 57.695 40.000 0.00 0.00 44.70 0.86
1869 3467 6.733509 GAGCTCCCTCCTAATTCTAGGTATA 58.266 44.000 0.87 0.00 44.70 1.47
1870 3468 5.585894 GAGCTCCCTCCTAATTCTAGGTAT 58.414 45.833 0.87 0.00 44.70 2.73
1884 3482 1.068921 GAATCGCAGGAGCTCCCTC 59.931 63.158 29.54 19.27 45.60 4.30
1886 3484 0.681733 TATGAATCGCAGGAGCTCCC 59.318 55.000 29.54 14.03 39.10 4.30
1887 3485 2.533266 TTATGAATCGCAGGAGCTCC 57.467 50.000 26.22 26.22 39.10 4.70
1888 3486 3.722147 TCTTTATGAATCGCAGGAGCTC 58.278 45.455 4.71 4.71 39.10 4.09
1889 3487 3.827008 TCTTTATGAATCGCAGGAGCT 57.173 42.857 0.00 0.00 39.10 4.09
1890 3488 6.545504 TTATTCTTTATGAATCGCAGGAGC 57.454 37.500 0.00 0.00 43.69 4.70
1891 3489 8.370493 TCTTTATTCTTTATGAATCGCAGGAG 57.630 34.615 0.00 0.00 43.69 3.69
1892 3490 8.731275 TTCTTTATTCTTTATGAATCGCAGGA 57.269 30.769 0.00 0.00 43.69 3.86
1893 3491 9.956720 AATTCTTTATTCTTTATGAATCGCAGG 57.043 29.630 0.00 0.00 43.69 4.85
1895 3493 9.734620 CCAATTCTTTATTCTTTATGAATCGCA 57.265 29.630 0.00 0.00 43.69 5.10
1896 3494 8.694394 GCCAATTCTTTATTCTTTATGAATCGC 58.306 33.333 0.00 0.00 43.69 4.58
1897 3495 9.956720 AGCCAATTCTTTATTCTTTATGAATCG 57.043 29.630 0.00 0.00 43.69 3.34
1910 3508 7.765695 TCTTTCAGTTCAGCCAATTCTTTAT 57.234 32.000 0.00 0.00 0.00 1.40
1942 3540 0.770499 TCCCTGAAACACCAGCATGA 59.230 50.000 0.00 0.00 39.69 3.07
2085 3683 2.125512 ACCGCAGATTGCTCGTCC 60.126 61.111 0.00 0.00 42.25 4.79
2217 3815 8.334074 AACTTTGCTCAAGTCAATGAGAGAAGT 61.334 37.037 8.41 12.17 45.77 3.01
2218 3816 6.017275 AACTTTGCTCAAGTCAATGAGAGAAG 60.017 38.462 8.41 11.66 45.77 2.85
2221 3819 5.008415 ACAACTTTGCTCAAGTCAATGAGAG 59.992 40.000 8.41 0.18 45.77 3.20
2222 3820 4.883585 ACAACTTTGCTCAAGTCAATGAGA 59.116 37.500 8.41 0.00 45.77 3.27
2223 3821 5.179045 ACAACTTTGCTCAAGTCAATGAG 57.821 39.130 2.76 0.02 45.77 2.90
2224 3822 5.581126 AACAACTTTGCTCAAGTCAATGA 57.419 34.783 2.76 0.00 45.77 2.57
2263 3861 6.265422 ACCTGGAGAAAAATAAACCAAGAGTG 59.735 38.462 0.00 0.00 0.00 3.51
2271 3869 6.625960 GCTGGATCACCTGGAGAAAAATAAAC 60.626 42.308 0.00 0.00 35.96 2.01
2275 3879 3.011032 AGCTGGATCACCTGGAGAAAAAT 59.989 43.478 0.00 0.00 35.96 1.82
2281 3885 1.411977 CTACAGCTGGATCACCTGGAG 59.588 57.143 19.93 7.57 35.96 3.86
2283 3887 1.489481 TCTACAGCTGGATCACCTGG 58.511 55.000 19.93 0.00 35.96 4.45
2333 3937 3.546543 GGATCCGATCCCGCACCA 61.547 66.667 15.75 0.00 43.88 4.17
2366 3970 8.344831 GCAATATTGACATACTTGACAGCATTA 58.655 33.333 19.73 0.00 0.00 1.90
2444 4049 1.997606 GCATTCATGGAAAGCAGTTGC 59.002 47.619 0.00 0.00 36.45 4.17
2468 4073 2.620251 TGTGGTGTCAGTGAGAAAGG 57.380 50.000 0.00 0.00 0.00 3.11
2483 4088 2.361757 TGCAAAAGGACAACTCATGTGG 59.638 45.455 0.00 0.00 44.12 4.17
2625 4238 1.246056 GGCATCTGCAGCAAGGTGAA 61.246 55.000 9.47 0.00 44.36 3.18
2742 4355 4.617530 GCATTGGCGGAAGTATACGAGATA 60.618 45.833 0.00 0.00 0.00 1.98
2764 4377 5.005740 TGATTCTCATATGGTAAGCATGGC 58.994 41.667 2.13 0.00 0.00 4.40
2766 4379 8.880750 CAGTATGATTCTCATATGGTAAGCATG 58.119 37.037 21.66 10.53 40.97 4.06
2823 4436 4.528596 TGTTCCACCTTTTTCAAAACTGGA 59.471 37.500 7.82 4.17 32.05 3.86
2958 4572 7.041508 ACTGCAAGACAACTAAAGATTGAGAAG 60.042 37.037 0.00 0.00 37.43 2.85
2972 4586 4.151335 CAGTGATCACTACTGCAAGACAAC 59.849 45.833 27.44 0.00 40.20 3.32
2985 4599 5.530171 GGACATGCAAATATCAGTGATCACT 59.470 40.000 22.89 22.89 43.61 3.41
3175 4789 3.658757 GGCTGTATGAGGCAACAAAAA 57.341 42.857 0.00 0.00 46.77 1.94
3195 4809 8.195436 AGATGAGAATTGCCACAATTTTATCAG 58.805 33.333 6.97 0.00 0.00 2.90
3203 4817 5.021458 AGGAAAGATGAGAATTGCCACAAT 58.979 37.500 0.00 0.00 0.00 2.71
3209 4823 7.622893 AAGAAGTAGGAAAGATGAGAATTGC 57.377 36.000 0.00 0.00 0.00 3.56
3224 4838 7.745620 ACCTGATTTTTGTGTAAGAAGTAGG 57.254 36.000 0.00 0.00 0.00 3.18
3225 4839 8.433126 CGTACCTGATTTTTGTGTAAGAAGTAG 58.567 37.037 0.00 0.00 0.00 2.57
3233 4847 7.380536 ACATAGACGTACCTGATTTTTGTGTA 58.619 34.615 0.00 0.00 0.00 2.90
3235 4849 6.721571 ACATAGACGTACCTGATTTTTGTG 57.278 37.500 0.00 0.00 0.00 3.33
3236 4850 7.494625 CCATACATAGACGTACCTGATTTTTGT 59.505 37.037 0.00 0.00 0.00 2.83
3242 4857 4.149598 TGCCATACATAGACGTACCTGAT 58.850 43.478 0.00 0.00 0.00 2.90
3253 4868 3.306973 CGGTAATCGCATGCCATACATAG 59.693 47.826 13.15 5.01 36.64 2.23
3349 4964 1.633774 TCTTCTGGACTCCTGGTGAC 58.366 55.000 2.23 0.00 0.00 3.67
3646 5261 9.783256 GCAAAATAAGGTTACCTGTATAAGTTG 57.217 33.333 3.99 10.68 32.13 3.16
3662 5277 4.022068 TGCAGTTTCAGGAGCAAAATAAGG 60.022 41.667 0.00 0.00 33.48 2.69
3683 5298 4.272018 CACCAAGCTTGAGTGAGTATATGC 59.728 45.833 29.31 0.00 33.82 3.14
3719 5334 6.883217 ACTGTGGCAAAGATCATCCATATATC 59.117 38.462 12.68 0.00 0.00 1.63
3756 5371 0.037326 CAGAGGCTCTTACAACCGCA 60.037 55.000 15.90 0.00 0.00 5.69
3765 5380 3.684981 GCCAGAAATCATCAGAGGCTCTT 60.685 47.826 15.90 0.00 38.77 2.85
3804 5419 2.416547 GGATGCGATGTGTATGGTATGC 59.583 50.000 0.00 0.00 0.00 3.14
3825 5440 3.482436 GGAAAACGGTATTGTAAGCGACG 60.482 47.826 2.18 0.00 42.76 5.12
3831 5446 5.867330 TCTCCAAGGAAAACGGTATTGTAA 58.133 37.500 0.00 0.00 0.00 2.41
3840 5455 3.365364 GCATGAACTCTCCAAGGAAAACG 60.365 47.826 0.00 0.00 0.00 3.60
3846 5461 1.093159 GCTGCATGAACTCTCCAAGG 58.907 55.000 0.00 0.00 0.00 3.61
3895 5510 4.640201 AGAGAGCAGAACAGAGTAGTGATC 59.360 45.833 0.00 0.00 0.00 2.92
3902 5517 1.969923 AGCAAGAGAGCAGAACAGAGT 59.030 47.619 0.00 0.00 36.85 3.24
3925 5540 6.693315 AGAAGATCTGAGAGTAGTAAGCAC 57.307 41.667 0.00 0.00 0.00 4.40
3927 5542 9.204570 CTACTAGAAGATCTGAGAGTAGTAAGC 57.795 40.741 20.24 0.00 32.50 3.09
3930 5545 8.364894 CAGCTACTAGAAGATCTGAGAGTAGTA 58.635 40.741 24.82 17.05 36.38 1.82
3931 5546 7.070696 TCAGCTACTAGAAGATCTGAGAGTAGT 59.929 40.741 24.82 16.90 36.38 2.73
3932 5547 7.441836 TCAGCTACTAGAAGATCTGAGAGTAG 58.558 42.308 22.38 22.38 36.76 2.57
3933 5548 7.368198 TCAGCTACTAGAAGATCTGAGAGTA 57.632 40.000 0.00 3.52 0.00 2.59
3934 5549 6.247229 TCAGCTACTAGAAGATCTGAGAGT 57.753 41.667 0.00 2.41 0.00 3.24
3935 5550 6.767902 AGTTCAGCTACTAGAAGATCTGAGAG 59.232 42.308 0.00 0.00 32.94 3.20
3936 5551 6.658849 AGTTCAGCTACTAGAAGATCTGAGA 58.341 40.000 0.00 0.00 32.94 3.27
3937 5552 6.942532 AGTTCAGCTACTAGAAGATCTGAG 57.057 41.667 0.00 0.00 32.94 3.35
3938 5553 6.661377 ACAAGTTCAGCTACTAGAAGATCTGA 59.339 38.462 0.00 0.00 0.00 3.27
3939 5554 6.862209 ACAAGTTCAGCTACTAGAAGATCTG 58.138 40.000 0.00 0.00 0.00 2.90
3940 5555 8.582657 TTACAAGTTCAGCTACTAGAAGATCT 57.417 34.615 0.00 0.00 0.00 2.75
3945 5560 6.591750 AGCTTACAAGTTCAGCTACTAGAA 57.408 37.500 0.00 0.00 42.25 2.10
3952 5567 4.517075 GGAAAGAAGCTTACAAGTTCAGCT 59.483 41.667 0.00 1.84 46.12 4.24
3953 5568 4.275936 TGGAAAGAAGCTTACAAGTTCAGC 59.724 41.667 0.00 0.00 0.00 4.26
3987 5602 2.283529 ATCGGGTGGACGCTCTGTT 61.284 57.895 0.00 0.00 0.00 3.16
4088 5703 6.811253 ATACACGTATGGAAAAGCTGAAAA 57.189 33.333 0.00 0.00 0.00 2.29
4166 5782 4.037923 CACCCACAGTTAGCATCAAAGTTT 59.962 41.667 0.00 0.00 0.00 2.66
4168 5784 3.149196 CACCCACAGTTAGCATCAAAGT 58.851 45.455 0.00 0.00 0.00 2.66
4186 5802 1.089920 GTCACTGCCATGATCACACC 58.910 55.000 0.00 0.00 0.00 4.16
4211 5827 3.866651 CAGATCGAAGTCATGGTTTCCT 58.133 45.455 0.00 0.00 0.00 3.36
4414 6041 0.376152 GAATGCTGCAGTCCATCACG 59.624 55.000 18.52 0.00 0.00 4.35
4704 6331 0.535102 AAAGGCAGGACCAACGTCAG 60.535 55.000 0.00 0.00 43.14 3.51
4705 6332 0.106918 AAAAGGCAGGACCAACGTCA 60.107 50.000 0.00 0.00 43.14 4.35
4708 6335 1.318576 AGAAAAAGGCAGGACCAACG 58.681 50.000 0.00 0.00 43.14 4.10
4745 6372 2.660064 GGGCAGGACGGTCACATCT 61.660 63.158 10.76 0.00 0.00 2.90
4748 6375 3.164977 TTGGGCAGGACGGTCACA 61.165 61.111 10.76 0.00 0.00 3.58
5000 6627 3.659089 AACCGCCTCCGAATCCACG 62.659 63.158 0.00 0.00 36.29 4.94
5053 6680 4.980805 GCACGCCGACCTGGAACA 62.981 66.667 0.00 0.00 42.00 3.18
5213 6891 6.237542 GCAAATAATAAATCACAGGCAACACG 60.238 38.462 0.00 0.00 41.41 4.49
5343 7028 7.560262 ACAGGCACATACATAGTAGTAAGAGAA 59.440 37.037 0.00 0.00 0.00 2.87
5347 7032 6.697455 CACACAGGCACATACATAGTAGTAAG 59.303 42.308 0.00 0.00 0.00 2.34
5348 7033 6.153851 ACACACAGGCACATACATAGTAGTAA 59.846 38.462 0.00 0.00 0.00 2.24
5349 7034 5.655090 ACACACAGGCACATACATAGTAGTA 59.345 40.000 0.00 0.00 0.00 1.82
5350 7035 4.466370 ACACACAGGCACATACATAGTAGT 59.534 41.667 0.00 0.00 0.00 2.73
5351 7036 5.011090 ACACACAGGCACATACATAGTAG 57.989 43.478 0.00 0.00 0.00 2.57
5357 7042 2.217750 GACAACACACAGGCACATACA 58.782 47.619 0.00 0.00 0.00 2.29
5367 7052 1.019805 TTTCCGCGTGACAACACACA 61.020 50.000 4.92 0.00 46.20 3.72
5410 7096 6.857964 GCATCAAGATTTGTCCAATATAACCG 59.142 38.462 0.00 0.00 0.00 4.44
5490 7176 5.655090 TGTTGAGACGGAGGAGTAAATGATA 59.345 40.000 0.00 0.00 0.00 2.15
5533 7219 3.740128 CTGGCAATCGACCCGGGAG 62.740 68.421 32.02 21.08 0.00 4.30
5536 7222 4.856801 CCCTGGCAATCGACCCGG 62.857 72.222 0.00 0.00 0.00 5.73
5539 7225 1.749258 GGTTCCCTGGCAATCGACC 60.749 63.158 0.00 0.00 0.00 4.79
5556 7242 7.481275 ACTTTGTATTGAAGTTGCAAAATGG 57.519 32.000 0.00 0.00 33.76 3.16
5625 7312 4.758688 CAGATCACTTACAGGCACATACA 58.241 43.478 0.00 0.00 0.00 2.29
5640 7327 6.024552 TGAAAACCCAATAAAGCAGATCAC 57.975 37.500 0.00 0.00 0.00 3.06
5655 7342 7.929941 ATCAGTCTCTTATCTTTGAAAACCC 57.070 36.000 0.00 0.00 0.00 4.11
5747 7434 1.128200 TCTATCCACCACCCATTCGG 58.872 55.000 0.00 0.00 37.81 4.30
5752 7439 2.626785 TCACTTTCTATCCACCACCCA 58.373 47.619 0.00 0.00 0.00 4.51
5923 7610 4.275810 ACAATCTCATCATCACCTTTGGG 58.724 43.478 0.00 0.00 38.88 4.12
5925 7612 6.600822 ACCTTACAATCTCATCATCACCTTTG 59.399 38.462 0.00 0.00 0.00 2.77
5927 7614 6.118170 CACCTTACAATCTCATCATCACCTT 58.882 40.000 0.00 0.00 0.00 3.50
5968 7655 3.885297 CGGTACCCTTTATAAGTCGAGGA 59.115 47.826 6.25 0.00 0.00 3.71
6053 7740 1.039233 ATCCAAGGCAAGCCAATCCG 61.039 55.000 14.40 0.00 38.92 4.18
6151 7838 2.283676 GTCTCCCACCAGACCGGA 60.284 66.667 9.46 0.00 37.43 5.14
6205 7892 4.561752 AGACTATTTCAGGGGCTAGTGAT 58.438 43.478 0.00 0.00 0.00 3.06
6221 7908 1.827969 AGCGGCTGAGTTCAAGACTAT 59.172 47.619 0.00 0.00 39.19 2.12
6222 7909 1.257743 AGCGGCTGAGTTCAAGACTA 58.742 50.000 0.00 0.00 39.19 2.59
6276 7964 2.069273 CAAGACCTCGTCACACATTCC 58.931 52.381 0.00 0.00 34.60 3.01
6288 7976 0.670854 GCGGGAACTGTCAAGACCTC 60.671 60.000 0.00 0.00 36.83 3.85
6293 7981 1.363744 GATCAGCGGGAACTGTCAAG 58.636 55.000 0.00 0.00 38.84 3.02
6301 7989 0.253044 CTTTCAGGGATCAGCGGGAA 59.747 55.000 0.00 0.00 0.00 3.97
6303 7991 0.253044 TTCTTTCAGGGATCAGCGGG 59.747 55.000 0.00 0.00 0.00 6.13
6306 7994 1.332997 CGCATTCTTTCAGGGATCAGC 59.667 52.381 0.00 0.00 0.00 4.26
6307 7995 2.353889 CACGCATTCTTTCAGGGATCAG 59.646 50.000 0.00 0.00 0.00 2.90
6308 7996 2.358957 CACGCATTCTTTCAGGGATCA 58.641 47.619 0.00 0.00 0.00 2.92
6309 7997 1.064654 GCACGCATTCTTTCAGGGATC 59.935 52.381 0.00 0.00 0.00 3.36
6310 7998 1.098050 GCACGCATTCTTTCAGGGAT 58.902 50.000 0.00 0.00 0.00 3.85
6311 7999 0.960364 GGCACGCATTCTTTCAGGGA 60.960 55.000 0.00 0.00 0.00 4.20
6312 8000 1.243342 TGGCACGCATTCTTTCAGGG 61.243 55.000 0.00 0.00 0.00 4.45
6313 8001 0.813184 ATGGCACGCATTCTTTCAGG 59.187 50.000 0.00 0.00 0.00 3.86
6314 8002 1.741706 AGATGGCACGCATTCTTTCAG 59.258 47.619 0.00 0.00 0.00 3.02
6315 8003 1.825090 AGATGGCACGCATTCTTTCA 58.175 45.000 0.00 0.00 0.00 2.69
6316 8004 2.927553 AAGATGGCACGCATTCTTTC 57.072 45.000 0.00 0.00 0.00 2.62
6317 8005 4.989279 AATAAGATGGCACGCATTCTTT 57.011 36.364 5.69 0.00 0.00 2.52
6318 8006 4.989279 AAATAAGATGGCACGCATTCTT 57.011 36.364 5.69 5.69 0.00 2.52
6319 8007 4.989279 AAAATAAGATGGCACGCATTCT 57.011 36.364 0.00 0.00 0.00 2.40
6320 8008 5.687285 CCTAAAAATAAGATGGCACGCATTC 59.313 40.000 0.00 0.00 0.00 2.67
6321 8009 5.591099 CCTAAAAATAAGATGGCACGCATT 58.409 37.500 0.00 0.00 0.00 3.56
6322 8010 4.499696 GCCTAAAAATAAGATGGCACGCAT 60.500 41.667 0.00 0.00 40.04 4.73
6323 8011 3.181491 GCCTAAAAATAAGATGGCACGCA 60.181 43.478 0.00 0.00 40.04 5.24
6324 8012 3.181491 TGCCTAAAAATAAGATGGCACGC 60.181 43.478 0.00 0.00 44.35 5.34
6325 8013 4.630894 TGCCTAAAAATAAGATGGCACG 57.369 40.909 0.00 0.00 44.35 5.34
6328 8016 5.852282 TCCTTGCCTAAAAATAAGATGGC 57.148 39.130 0.00 0.00 40.62 4.40
6329 8017 6.239402 CCCATCCTTGCCTAAAAATAAGATGG 60.239 42.308 7.99 7.99 33.07 3.51
6330 8018 6.239402 CCCCATCCTTGCCTAAAAATAAGATG 60.239 42.308 0.00 0.00 0.00 2.90
6331 8019 5.840693 CCCCATCCTTGCCTAAAAATAAGAT 59.159 40.000 0.00 0.00 0.00 2.40
6332 8020 5.043732 TCCCCATCCTTGCCTAAAAATAAGA 60.044 40.000 0.00 0.00 0.00 2.10
6333 8021 5.208121 TCCCCATCCTTGCCTAAAAATAAG 58.792 41.667 0.00 0.00 0.00 1.73
6334 8022 5.213868 TCCCCATCCTTGCCTAAAAATAA 57.786 39.130 0.00 0.00 0.00 1.40
6335 8023 4.890499 TCCCCATCCTTGCCTAAAAATA 57.110 40.909 0.00 0.00 0.00 1.40
6336 8024 3.774842 TCCCCATCCTTGCCTAAAAAT 57.225 42.857 0.00 0.00 0.00 1.82
6337 8025 3.551635 TTCCCCATCCTTGCCTAAAAA 57.448 42.857 0.00 0.00 0.00 1.94
6338 8026 3.551635 TTTCCCCATCCTTGCCTAAAA 57.448 42.857 0.00 0.00 0.00 1.52
6339 8027 3.551635 TTTTCCCCATCCTTGCCTAAA 57.448 42.857 0.00 0.00 0.00 1.85
6340 8028 3.551635 TTTTTCCCCATCCTTGCCTAA 57.448 42.857 0.00 0.00 0.00 2.69
6358 8046 6.151817 GCTTCAATATGACTCCCTGAGTTTTT 59.848 38.462 0.00 0.00 43.53 1.94
6359 8047 5.649831 GCTTCAATATGACTCCCTGAGTTTT 59.350 40.000 0.00 0.00 43.53 2.43
6360 8048 5.189180 GCTTCAATATGACTCCCTGAGTTT 58.811 41.667 0.00 0.00 43.53 2.66
6361 8049 4.225942 TGCTTCAATATGACTCCCTGAGTT 59.774 41.667 0.00 0.00 43.53 3.01
6362 8050 3.776969 TGCTTCAATATGACTCCCTGAGT 59.223 43.478 0.00 0.00 46.42 3.41
6363 8051 4.412796 TGCTTCAATATGACTCCCTGAG 57.587 45.455 0.00 0.00 35.52 3.35
6364 8052 5.128205 CAATGCTTCAATATGACTCCCTGA 58.872 41.667 0.00 0.00 0.00 3.86
6365 8053 4.277672 CCAATGCTTCAATATGACTCCCTG 59.722 45.833 0.00 0.00 0.00 4.45
6366 8054 4.467769 CCAATGCTTCAATATGACTCCCT 58.532 43.478 0.00 0.00 0.00 4.20
6367 8055 3.005155 GCCAATGCTTCAATATGACTCCC 59.995 47.826 0.00 0.00 33.53 4.30
6368 8056 3.005155 GGCCAATGCTTCAATATGACTCC 59.995 47.826 0.00 0.00 37.74 3.85
6369 8057 3.633525 TGGCCAATGCTTCAATATGACTC 59.366 43.478 0.61 0.00 37.74 3.36
6370 8058 3.634504 TGGCCAATGCTTCAATATGACT 58.365 40.909 0.61 0.00 37.74 3.41
6371 8059 3.797865 GCTGGCCAATGCTTCAATATGAC 60.798 47.826 7.01 0.00 37.74 3.06
6372 8060 2.363038 GCTGGCCAATGCTTCAATATGA 59.637 45.455 7.01 0.00 37.74 2.15
6373 8061 2.101750 TGCTGGCCAATGCTTCAATATG 59.898 45.455 17.08 0.00 37.74 1.78
6374 8062 2.390696 TGCTGGCCAATGCTTCAATAT 58.609 42.857 17.08 0.00 37.74 1.28
6375 8063 1.849977 TGCTGGCCAATGCTTCAATA 58.150 45.000 17.08 0.00 37.74 1.90
6376 8064 0.978151 TTGCTGGCCAATGCTTCAAT 59.022 45.000 17.08 0.00 37.74 2.57
6377 8065 0.319083 CTTGCTGGCCAATGCTTCAA 59.681 50.000 17.08 8.70 37.74 2.69
6378 8066 0.540133 TCTTGCTGGCCAATGCTTCA 60.540 50.000 17.08 1.59 37.74 3.02
6379 8067 0.822164 ATCTTGCTGGCCAATGCTTC 59.178 50.000 17.08 0.00 37.74 3.86
6380 8068 2.148446 TATCTTGCTGGCCAATGCTT 57.852 45.000 17.08 3.73 37.74 3.91
6381 8069 2.148446 TTATCTTGCTGGCCAATGCT 57.852 45.000 17.08 0.64 37.74 3.79
6382 8070 2.817901 CTTTATCTTGCTGGCCAATGC 58.182 47.619 7.01 8.75 31.91 3.56
6383 8071 2.797087 CGCTTTATCTTGCTGGCCAATG 60.797 50.000 7.01 0.00 31.91 2.82
6384 8072 1.406539 CGCTTTATCTTGCTGGCCAAT 59.593 47.619 7.01 0.00 31.91 3.16
6385 8073 0.810648 CGCTTTATCTTGCTGGCCAA 59.189 50.000 7.01 0.00 0.00 4.52
6386 8074 0.035534 TCGCTTTATCTTGCTGGCCA 60.036 50.000 4.71 4.71 0.00 5.36
6387 8075 0.378610 GTCGCTTTATCTTGCTGGCC 59.621 55.000 0.00 0.00 0.00 5.36
6388 8076 0.026803 CGTCGCTTTATCTTGCTGGC 59.973 55.000 0.00 0.00 0.00 4.85
6389 8077 1.324736 GTCGTCGCTTTATCTTGCTGG 59.675 52.381 0.00 0.00 0.00 4.85
6390 8078 1.324736 GGTCGTCGCTTTATCTTGCTG 59.675 52.381 0.00 0.00 0.00 4.41
6391 8079 1.641577 GGTCGTCGCTTTATCTTGCT 58.358 50.000 0.00 0.00 0.00 3.91
6392 8080 0.651031 GGGTCGTCGCTTTATCTTGC 59.349 55.000 0.00 0.00 0.00 4.01
6393 8081 2.004583 TGGGTCGTCGCTTTATCTTG 57.995 50.000 0.00 0.00 0.00 3.02
6394 8082 2.028385 ACTTGGGTCGTCGCTTTATCTT 60.028 45.455 0.00 0.00 0.00 2.40
6395 8083 1.549170 ACTTGGGTCGTCGCTTTATCT 59.451 47.619 0.00 0.00 0.00 1.98
6396 8084 1.659098 CACTTGGGTCGTCGCTTTATC 59.341 52.381 0.00 0.00 0.00 1.75
6397 8085 1.274167 TCACTTGGGTCGTCGCTTTAT 59.726 47.619 0.00 0.00 0.00 1.40
6398 8086 0.675083 TCACTTGGGTCGTCGCTTTA 59.325 50.000 0.00 0.00 0.00 1.85
6399 8087 0.878961 GTCACTTGGGTCGTCGCTTT 60.879 55.000 0.00 0.00 0.00 3.51
6400 8088 1.300697 GTCACTTGGGTCGTCGCTT 60.301 57.895 0.00 0.00 0.00 4.68
6401 8089 2.338984 GTCACTTGGGTCGTCGCT 59.661 61.111 0.00 0.00 0.00 4.93
6402 8090 2.028484 TGTCACTTGGGTCGTCGC 59.972 61.111 0.00 0.00 0.00 5.19
6403 8091 1.066752 TGTGTCACTTGGGTCGTCG 59.933 57.895 4.27 0.00 0.00 5.12
6404 8092 2.601562 GTGTGTCACTTGGGTCGTC 58.398 57.895 4.27 0.00 0.00 4.20
6405 8093 4.848685 GTGTGTCACTTGGGTCGT 57.151 55.556 4.27 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.