Multiple sequence alignment - TraesCS7D01G236400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G236400 chr7D 100.000 5187 0 0 1 5187 199481442 199476256 0.000000e+00 9579.0
1 TraesCS7D01G236400 chr7D 80.207 1061 203 6 2994 4051 199425743 199426799 0.000000e+00 789.0
2 TraesCS7D01G236400 chr7B 92.563 2864 124 35 1675 4500 164077397 164074585 0.000000e+00 4026.0
3 TraesCS7D01G236400 chr7B 87.679 1120 62 46 549 1617 164078598 164077504 0.000000e+00 1234.0
4 TraesCS7D01G236400 chr7B 92.000 550 36 6 5 552 164079184 164078641 0.000000e+00 765.0
5 TraesCS7D01G236400 chr7A 96.368 1652 38 8 2800 4431 209403346 209401697 0.000000e+00 2699.0
6 TraesCS7D01G236400 chr7A 87.427 859 46 28 1890 2737 209404161 209403354 0.000000e+00 931.0
7 TraesCS7D01G236400 chr7A 89.527 592 39 7 966 1553 209406781 209406209 0.000000e+00 728.0
8 TraesCS7D01G236400 chr7A 88.869 548 51 5 4641 5187 209397924 209397386 0.000000e+00 665.0
9 TraesCS7D01G236400 chr7A 90.150 467 39 3 1 460 209409376 209408910 7.430000e-168 601.0
10 TraesCS7D01G236400 chr7A 92.157 255 7 6 500 744 209407257 209407006 1.070000e-91 348.0
11 TraesCS7D01G236400 chr7A 85.837 233 18 8 1594 1817 209406064 209405838 3.120000e-57 233.0
12 TraesCS7D01G236400 chr7A 84.653 202 20 5 4432 4629 209401288 209401094 1.910000e-44 191.0
13 TraesCS7D01G236400 chr7A 92.562 121 4 3 779 896 209407009 209406891 8.930000e-38 169.0
14 TraesCS7D01G236400 chr7A 94.737 57 3 0 1548 1604 209406131 209406075 7.150000e-14 89.8
15 TraesCS7D01G236400 chr5A 84.197 1177 176 7 2994 4168 664264361 664265529 0.000000e+00 1134.0
16 TraesCS7D01G236400 chr4D 83.008 1177 190 7 2994 4168 484044660 484045828 0.000000e+00 1057.0
17 TraesCS7D01G236400 chr4D 82.937 1178 189 10 2995 4169 484043080 484044248 0.000000e+00 1051.0
18 TraesCS7D01G236400 chr4D 81.409 1178 207 10 2995 4169 484046787 484047955 0.000000e+00 952.0
19 TraesCS7D01G236400 chr4D 100.000 30 0 0 378 407 69645568 69645597 7.260000e-04 56.5
20 TraesCS7D01G236400 chr4B 83.008 1177 190 7 2994 4168 615251143 615252311 0.000000e+00 1057.0
21 TraesCS7D01G236400 chr4B 82.088 1178 199 10 2995 4169 615248943 615250111 0.000000e+00 996.0
22 TraesCS7D01G236400 chr6A 78.164 403 71 16 4582 4974 515651344 515650949 1.870000e-59 241.0
23 TraesCS7D01G236400 chr3A 82.308 130 11 5 4595 4712 77469696 77469567 9.190000e-18 102.0
24 TraesCS7D01G236400 chr5D 86.667 75 5 4 4281 4352 539674254 539674182 1.550000e-10 78.7
25 TraesCS7D01G236400 chr6B 88.136 59 4 3 4301 4356 157910915 157910973 3.350000e-07 67.6
26 TraesCS7D01G236400 chr6B 91.111 45 2 2 377 420 84961178 84961135 5.610000e-05 60.2
27 TraesCS7D01G236400 chr2A 97.368 38 1 0 384 421 5378822 5378785 1.210000e-06 65.8
28 TraesCS7D01G236400 chr2A 100.000 30 0 0 377 406 744446356 744446327 7.260000e-04 56.5
29 TraesCS7D01G236400 chr1A 93.182 44 3 0 378 421 578330037 578330080 1.210000e-06 65.8
30 TraesCS7D01G236400 chr6D 91.489 47 2 2 377 422 36634925 36634880 4.340000e-06 63.9
31 TraesCS7D01G236400 chr6D 91.489 47 2 2 377 422 36659832 36659787 4.340000e-06 63.9
32 TraesCS7D01G236400 chr3D 92.857 42 2 1 4317 4358 337302585 337302625 5.610000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G236400 chr7D 199476256 199481442 5186 True 9579.000000 9579 100.000000 1 5187 1 chr7D.!!$R1 5186
1 TraesCS7D01G236400 chr7D 199425743 199426799 1056 False 789.000000 789 80.207000 2994 4051 1 chr7D.!!$F1 1057
2 TraesCS7D01G236400 chr7B 164074585 164079184 4599 True 2008.333333 4026 90.747333 5 4500 3 chr7B.!!$R1 4495
3 TraesCS7D01G236400 chr7A 209397386 209409376 11990 True 665.480000 2699 90.228700 1 5187 10 chr7A.!!$R1 5186
4 TraesCS7D01G236400 chr5A 664264361 664265529 1168 False 1134.000000 1134 84.197000 2994 4168 1 chr5A.!!$F1 1174
5 TraesCS7D01G236400 chr4D 484043080 484047955 4875 False 1020.000000 1057 82.451333 2994 4169 3 chr4D.!!$F2 1175
6 TraesCS7D01G236400 chr4B 615248943 615252311 3368 False 1026.500000 1057 82.548000 2994 4169 2 chr4B.!!$F1 1175

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
976 2712 0.037326 CAACCAGCTCGAAGCCAGTA 60.037 55.000 3.66 0.0 43.77 2.74 F
1199 2936 0.172803 GACAGGCTGGTGTACCTACG 59.827 60.000 20.34 0.0 33.38 3.51 F
1200 2937 0.541296 ACAGGCTGGTGTACCTACGT 60.541 55.000 20.34 0.0 33.38 3.57 F
1201 2938 0.606604 CAGGCTGGTGTACCTACGTT 59.393 55.000 6.61 0.0 33.38 3.99 F
2433 5982 0.832135 ACTCTCCCTGCAGAACGGAA 60.832 55.000 17.39 4.1 0.00 4.30 F
2876 6434 1.468914 CATGAACGGTGAGAGAGACGA 59.531 52.381 0.00 0.0 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2459 6012 0.524862 CTGCACATGAGCCAAACCTC 59.475 55.000 12.78 0.0 0.00 3.85 R
2838 6396 1.007387 GGCAAGCAACTCCGTTTGG 60.007 57.895 0.00 0.0 0.00 3.28 R
2988 6546 2.697761 GCTGCCACATCTGCCACAG 61.698 63.158 0.00 0.0 0.00 3.66 R
3093 6665 3.740397 CCACGTAGACGGTGCCGA 61.740 66.667 18.16 0.0 44.95 5.54 R
3406 6978 1.741770 CCACTTGCGGCTGTAGTCC 60.742 63.158 0.00 0.0 0.00 3.85 R
4762 13001 0.179250 CGCGATTTGTGTGAGTTCGG 60.179 55.000 0.00 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
171 173 5.827797 AGTACAACTGAAAGAGAAAATGCCA 59.172 36.000 0.00 0.00 37.43 4.92
177 179 5.302568 ACTGAAAGAGAAAATGCCATGACAA 59.697 36.000 0.00 0.00 37.43 3.18
207 211 4.729227 TTTTTGAAGGAAACAGGACACC 57.271 40.909 0.00 0.00 0.00 4.16
251 255 9.810545 AAAAAGACGGAAATGTTAAAATCTGAA 57.189 25.926 0.00 0.00 0.00 3.02
381 390 0.179171 TCGCTTCATCTCGGACGTTC 60.179 55.000 0.00 0.00 0.00 3.95
402 411 6.545508 GTTCAATTTGCCATGCCTAAAAATC 58.454 36.000 0.00 0.00 0.00 2.17
498 2124 0.670162 ATCGCTTTGTGCTTTGCTGT 59.330 45.000 0.00 0.00 40.11 4.40
920 2620 5.869579 AGGATGCTTCACTTGTAAGAAGAA 58.130 37.500 6.37 0.00 42.95 2.52
921 2621 5.936956 AGGATGCTTCACTTGTAAGAAGAAG 59.063 40.000 18.27 18.27 42.95 2.85
922 2622 5.934625 GGATGCTTCACTTGTAAGAAGAAGA 59.065 40.000 22.80 14.25 42.95 2.87
923 2623 6.091986 GGATGCTTCACTTGTAAGAAGAAGAG 59.908 42.308 22.80 9.22 42.95 2.85
924 2624 5.918608 TGCTTCACTTGTAAGAAGAAGAGT 58.081 37.500 22.80 0.00 42.95 3.24
937 2637 2.983229 AGAAGAGTACTACGCTCGGAA 58.017 47.619 0.00 0.00 37.99 4.30
973 2709 2.669569 GCAACCAGCTCGAAGCCA 60.670 61.111 3.66 0.00 43.77 4.75
976 2712 0.037326 CAACCAGCTCGAAGCCAGTA 60.037 55.000 3.66 0.00 43.77 2.74
988 2724 1.142748 GCCAGTACGAGAGCAGCAT 59.857 57.895 0.00 0.00 0.00 3.79
1004 2740 2.819667 CATCCGGATGCGAGATGAC 58.180 57.895 30.53 0.00 39.84 3.06
1033 2769 2.417515 GGGAACGAGAGCAGTAAGAAGG 60.418 54.545 0.00 0.00 0.00 3.46
1164 2901 2.480759 CCCCAAGTTACAGTACGATCGG 60.481 54.545 20.98 3.61 0.00 4.18
1185 2922 3.260740 GCAACTCTCTTGATCTGACAGG 58.739 50.000 1.81 0.00 0.00 4.00
1192 2929 1.002888 CTTGATCTGACAGGCTGGTGT 59.997 52.381 20.34 0.00 0.00 4.16
1194 2931 1.550524 TGATCTGACAGGCTGGTGTAC 59.449 52.381 20.34 6.22 0.00 2.90
1195 2932 0.905357 ATCTGACAGGCTGGTGTACC 59.095 55.000 20.34 0.00 0.00 3.34
1197 2934 1.076513 TCTGACAGGCTGGTGTACCTA 59.923 52.381 20.34 0.00 33.38 3.08
1198 2935 1.204941 CTGACAGGCTGGTGTACCTAC 59.795 57.143 20.34 0.00 33.38 3.18
1199 2936 0.172803 GACAGGCTGGTGTACCTACG 59.827 60.000 20.34 0.00 33.38 3.51
1200 2937 0.541296 ACAGGCTGGTGTACCTACGT 60.541 55.000 20.34 0.00 33.38 3.57
1201 2938 0.606604 CAGGCTGGTGTACCTACGTT 59.393 55.000 6.61 0.00 33.38 3.99
1202 2939 0.893447 AGGCTGGTGTACCTACGTTC 59.107 55.000 0.00 0.00 33.38 3.95
1211 2948 4.401714 GTGTACCTACGTTCTTCTTCGAG 58.598 47.826 0.00 0.00 0.00 4.04
1249 2988 8.839310 TTTTGGTTTTCTGTTCTCAATTTTGA 57.161 26.923 0.00 0.00 35.57 2.69
1250 2989 9.447157 TTTTGGTTTTCTGTTCTCAATTTTGAT 57.553 25.926 0.00 0.00 36.46 2.57
1255 2994 6.713762 TTCTGTTCTCAATTTTGATGGTGT 57.286 33.333 0.00 0.00 36.46 4.16
1265 3004 2.157834 TTGATGGTGTGGTGTCGTAC 57.842 50.000 0.00 0.00 0.00 3.67
1281 3020 4.582701 TCGTACTTTTCACGAAGGGTAA 57.417 40.909 0.00 0.00 44.79 2.85
1282 3021 4.942852 TCGTACTTTTCACGAAGGGTAAA 58.057 39.130 0.00 0.00 44.79 2.01
1283 3022 4.744631 TCGTACTTTTCACGAAGGGTAAAC 59.255 41.667 0.00 0.00 44.79 2.01
1284 3023 4.084380 CGTACTTTTCACGAAGGGTAAACC 60.084 45.833 0.00 0.00 41.91 3.27
1285 3024 8.354369 TCGTACTTTTCACGAAGGGTAAACCT 62.354 42.308 0.00 0.00 44.79 3.50
1314 3053 3.834799 GGGCTTGCATGCAGCTCC 61.835 66.667 28.79 24.71 45.94 4.70
1368 3107 6.307776 ACTGTCTTCTCCGGAGAATATATGA 58.692 40.000 39.75 30.56 45.40 2.15
1394 3133 7.455641 TCTTAATTTCGTGGAGGCAATTTTA 57.544 32.000 0.00 0.00 0.00 1.52
1409 3149 7.053498 AGGCAATTTTAACACACCTTGATTTT 58.947 30.769 0.00 0.00 0.00 1.82
1481 3222 8.024285 CCTTTTTGGTTTACTTGATACGCATAA 58.976 33.333 0.00 0.00 0.00 1.90
1490 3231 5.601662 ACTTGATACGCATAAGTACTGCAT 58.398 37.500 0.00 0.00 39.64 3.96
1505 3246 5.820423 AGTACTGCATGTTTTGTGTGTTAGA 59.180 36.000 0.00 0.00 0.00 2.10
1598 3448 8.781196 CGTCAAAATCTTGATCCATATGAGAAT 58.219 33.333 3.65 0.00 43.39 2.40
1604 3454 5.930569 TCTTGATCCATATGAGAATTGAGCG 59.069 40.000 3.65 0.00 0.00 5.03
1617 3467 6.150976 TGAGAATTGAGCGGTAACAATGATTT 59.849 34.615 2.70 0.00 36.92 2.17
1629 3479 8.589629 CGGTAACAATGATTTGTACTACAGTAC 58.410 37.037 11.78 11.78 45.30 2.73
1647 3497 5.354234 ACAGTACTACCATATTTGTTGCAGC 59.646 40.000 0.00 0.00 0.00 5.25
1648 3498 4.881850 AGTACTACCATATTTGTTGCAGCC 59.118 41.667 0.00 0.00 0.00 4.85
1672 3522 3.857157 AGCTCTCGAGGAGTAGAGATT 57.143 47.619 13.56 0.00 41.96 2.40
1673 3523 4.967084 AGCTCTCGAGGAGTAGAGATTA 57.033 45.455 13.56 0.00 41.96 1.75
1721 3640 8.642432 TCAATGACTAGTTAATCGAATCCTCAT 58.358 33.333 0.00 0.00 0.00 2.90
1722 3641 8.920665 CAATGACTAGTTAATCGAATCCTCATC 58.079 37.037 0.00 0.00 0.00 2.92
1758 3681 3.667497 TCGATCAGGGATCAGCATTAC 57.333 47.619 6.98 0.00 38.84 1.89
1853 4033 1.499688 CGCGCATAGGTCTCGAGAGA 61.500 60.000 17.22 4.60 39.12 3.10
1856 4073 2.920227 GCGCATAGGTCTCGAGAGATTG 60.920 54.545 17.22 12.18 39.97 2.67
1859 4076 4.023963 CGCATAGGTCTCGAGAGATTGTTA 60.024 45.833 17.22 2.92 39.97 2.41
1862 4079 6.664515 CATAGGTCTCGAGAGATTGTTAGTC 58.335 44.000 17.22 0.00 39.97 2.59
1898 5425 6.968250 AGATAGTACTATTTCCTCGTTTCGG 58.032 40.000 16.46 0.00 0.00 4.30
1913 5440 6.849305 CCTCGTTTCGGTAATAATATGTTTGC 59.151 38.462 0.00 0.00 0.00 3.68
1959 5501 1.301716 AGCGACATGACCTGCGTTT 60.302 52.632 0.00 0.00 0.00 3.60
2014 5556 2.203112 TGCAGCAGATGGATCGGC 60.203 61.111 3.81 3.81 46.24 5.54
2199 5748 4.454504 CAGTTGACGTAGCCAGGTTAAAAT 59.545 41.667 0.00 0.00 0.00 1.82
2410 5959 2.800544 CGATGCCAACGGAGGTAATTAG 59.199 50.000 0.00 0.00 0.00 1.73
2433 5982 0.832135 ACTCTCCCTGCAGAACGGAA 60.832 55.000 17.39 4.10 0.00 4.30
2459 6012 3.662247 AGTTAGACTTGTTCGGGAGTG 57.338 47.619 0.00 0.00 0.00 3.51
2511 6064 5.225899 TGCTACACACACTATACTACGTG 57.774 43.478 0.00 0.00 37.18 4.49
2512 6065 4.696877 TGCTACACACACTATACTACGTGT 59.303 41.667 0.00 0.00 44.57 4.49
2513 6066 5.163824 TGCTACACACACTATACTACGTGTC 60.164 44.000 0.00 0.00 42.05 3.67
2514 6067 5.064452 GCTACACACACTATACTACGTGTCT 59.936 44.000 0.00 0.00 42.05 3.41
2515 6068 6.256539 GCTACACACACTATACTACGTGTCTA 59.743 42.308 0.00 0.00 42.05 2.59
2516 6069 6.414408 ACACACACTATACTACGTGTCTAC 57.586 41.667 0.00 0.00 42.05 2.59
2582 6135 3.425492 CCACCGCCAAAAACAAAAACAAG 60.425 43.478 0.00 0.00 0.00 3.16
2660 6218 2.535012 TGTCAACCATGTTACGCTCA 57.465 45.000 0.00 0.00 0.00 4.26
2678 6236 3.319122 GCTCAACCATTTCTTCTTGGTGT 59.681 43.478 0.00 0.00 45.44 4.16
2704 6262 7.393234 TGGTTTTACTAGCATTTACAGCATTCT 59.607 33.333 0.00 0.00 0.00 2.40
2719 6277 6.449698 ACAGCATTCTTTATGTTTTGAGGTG 58.550 36.000 0.00 0.00 36.57 4.00
2740 6298 3.125316 GCGGTGTTGTAGTGAAGTTACA 58.875 45.455 0.00 0.00 0.00 2.41
2753 6311 3.192844 TGAAGTTACAGAAGTAGAGCCCG 59.807 47.826 0.00 0.00 0.00 6.13
2755 6313 3.633418 AGTTACAGAAGTAGAGCCCGAT 58.367 45.455 0.00 0.00 0.00 4.18
2787 6345 5.300539 TGATAACTAGTGAAGCAGAGCCTAG 59.699 44.000 0.00 0.00 33.09 3.02
2838 6396 6.855914 TGTAATTTGTCGCAGATCTCAAAAAC 59.144 34.615 10.35 11.39 40.67 2.43
2876 6434 1.468914 CATGAACGGTGAGAGAGACGA 59.531 52.381 0.00 0.00 0.00 4.20
3189 6761 1.961277 CGCGCAAGTGGGAGAAACT 60.961 57.895 8.75 0.00 46.11 2.66
4156 7728 1.299648 CTTCCGAGGGGTCATGCAA 59.700 57.895 0.00 0.00 33.83 4.08
4229 8471 0.676466 TGCCCCTGAAGTTATGCACG 60.676 55.000 0.00 0.00 0.00 5.34
4235 8479 2.668457 CCTGAAGTTATGCACGTCACTC 59.332 50.000 0.00 0.00 38.79 3.51
4236 8480 3.579709 CTGAAGTTATGCACGTCACTCT 58.420 45.455 0.00 0.00 38.79 3.24
4362 8606 4.220163 CGGAGGGAGTACTACTTTTCAACT 59.780 45.833 4.77 0.00 0.00 3.16
4407 8651 9.520204 CACAAAATGGTAATTAATTAGCTGAGG 57.480 33.333 28.37 19.20 40.41 3.86
4409 8653 9.956720 CAAAATGGTAATTAATTAGCTGAGGAG 57.043 33.333 28.37 15.50 40.41 3.69
4458 9110 1.975680 AGGGCTCTTTTGGTAACGAGA 59.024 47.619 0.00 0.00 42.51 4.04
4461 9113 3.335579 GGCTCTTTTGGTAACGAGATGT 58.664 45.455 0.00 0.00 42.51 3.06
4478 9134 2.281539 TGTTAGACTCACGGACAGGA 57.718 50.000 0.00 0.00 0.00 3.86
4489 9145 0.822164 CGGACAGGATCTACGGGTTT 59.178 55.000 0.00 0.00 0.00 3.27
4501 9157 6.596497 GGATCTACGGGTTTTTCAATTGTAGA 59.404 38.462 5.13 2.52 40.50 2.59
4502 9158 6.790285 TCTACGGGTTTTTCAATTGTAGAC 57.210 37.500 5.13 0.98 33.80 2.59
4504 9160 6.938030 TCTACGGGTTTTTCAATTGTAGACAT 59.062 34.615 5.13 0.00 33.80 3.06
4508 9164 5.405269 GGGTTTTTCAATTGTAGACATGTGC 59.595 40.000 1.15 0.00 0.00 4.57
4510 9166 6.215845 GTTTTTCAATTGTAGACATGTGCCT 58.784 36.000 1.15 0.00 0.00 4.75
4540 9196 9.569122 TTTTATTATTATTGGAGACTAGGGTGC 57.431 33.333 0.00 0.00 0.00 5.01
4545 9201 0.909610 TGGAGACTAGGGTGCAAGGG 60.910 60.000 0.00 0.00 0.00 3.95
4546 9202 1.627297 GGAGACTAGGGTGCAAGGGG 61.627 65.000 0.00 0.00 0.00 4.79
4548 9204 0.475828 AGACTAGGGTGCAAGGGGTT 60.476 55.000 0.00 0.00 0.00 4.11
4551 9207 0.322546 CTAGGGTGCAAGGGGTTCAC 60.323 60.000 0.00 0.00 0.00 3.18
4563 9219 3.266240 GGTTCACCCTGTGGAATCC 57.734 57.895 0.00 0.00 33.87 3.01
4569 9225 4.169452 CCTGTGGAATCCAGGGGA 57.831 61.111 0.27 0.00 44.77 4.81
4574 9230 2.778717 GGAATCCAGGGGAGGGGG 60.779 72.222 0.00 0.00 34.05 5.40
4575 9231 2.044620 GAATCCAGGGGAGGGGGT 59.955 66.667 0.00 0.00 34.05 4.95
4636 9292 9.226345 GCTTTATTAATACTCAAATCACTGCAC 57.774 33.333 0.00 0.00 0.00 4.57
4637 9293 9.425893 CTTTATTAATACTCAAATCACTGCACG 57.574 33.333 0.00 0.00 0.00 5.34
4639 9295 4.928661 AATACTCAAATCACTGCACGTC 57.071 40.909 0.00 0.00 0.00 4.34
4658 12897 6.461698 GCACGTCAAATTAACGATAAAGTCTG 59.538 38.462 17.27 6.24 42.62 3.51
4663 12902 6.373216 TCAAATTAACGATAAAGTCTGGGGTG 59.627 38.462 0.00 0.00 0.00 4.61
4676 12915 1.681264 CTGGGGTGACTCAAACCAAAC 59.319 52.381 4.89 0.00 43.19 2.93
4678 12917 1.681264 GGGGTGACTCAAACCAAACTG 59.319 52.381 4.01 0.00 39.65 3.16
4682 12921 2.033424 GTGACTCAAACCAAACTGAGGC 59.967 50.000 4.27 1.21 46.29 4.70
4704 12943 1.238625 GGTTTTCGCGACCCCATTCA 61.239 55.000 9.15 0.00 0.00 2.57
4715 12954 1.315690 CCCCATTCAGCTAGCACATG 58.684 55.000 18.83 14.60 0.00 3.21
4753 12992 6.336842 ACTCCCTATTGCAATAATCAATGC 57.663 37.500 19.32 0.00 42.86 3.56
4760 12999 2.767394 TGCAATAATCAATGCAGGCCTT 59.233 40.909 0.00 0.00 46.87 4.35
4762 13001 3.801293 GCAATAATCAATGCAGGCCTTCC 60.801 47.826 0.00 0.00 42.12 3.46
4770 13009 3.068881 CAGGCCTTCCCGAACTCA 58.931 61.111 0.00 0.00 39.21 3.41
4778 13017 2.484264 CCTTCCCGAACTCACACAAATC 59.516 50.000 0.00 0.00 0.00 2.17
4783 13022 1.390123 CGAACTCACACAAATCGCGAT 59.610 47.619 17.62 17.62 0.00 4.58
4813 13052 1.346395 CTAATATACGGGCTGCCACCA 59.654 52.381 22.05 4.29 0.00 4.17
4814 13053 0.771127 AATATACGGGCTGCCACCAT 59.229 50.000 22.05 11.73 0.00 3.55
4815 13054 1.651737 ATATACGGGCTGCCACCATA 58.348 50.000 22.05 13.51 0.00 2.74
4816 13055 0.973632 TATACGGGCTGCCACCATAG 59.026 55.000 22.05 6.50 0.00 2.23
4817 13056 0.762842 ATACGGGCTGCCACCATAGA 60.763 55.000 22.05 0.00 0.00 1.98
4818 13057 0.978667 TACGGGCTGCCACCATAGAA 60.979 55.000 22.05 0.00 0.00 2.10
4824 13063 2.307098 GGCTGCCACCATAGAATATCCT 59.693 50.000 15.17 0.00 0.00 3.24
4831 13070 5.045286 GCCACCATAGAATATCCTTCATCCT 60.045 44.000 0.00 0.00 0.00 3.24
4841 13080 8.824783 AGAATATCCTTCATCCTGATTAAGAGG 58.175 37.037 3.25 0.00 0.00 3.69
4847 13086 6.317391 CCTTCATCCTGATTAAGAGGTTGAAC 59.683 42.308 17.91 0.00 41.36 3.18
4851 13090 4.349636 TCCTGATTAAGAGGTTGAACCACA 59.650 41.667 17.83 4.20 41.95 4.17
4901 13140 0.907704 TTGCACCCCATCCGAGTAGT 60.908 55.000 0.00 0.00 0.00 2.73
4912 13151 4.142138 CCATCCGAGTAGTAAGCTTCAACT 60.142 45.833 0.00 4.42 0.00 3.16
4935 13174 1.539388 CCATACAAAGTTGCGGCTTCA 59.461 47.619 0.00 0.00 0.00 3.02
4936 13175 2.030363 CCATACAAAGTTGCGGCTTCAA 60.030 45.455 0.00 0.00 0.00 2.69
4958 13198 6.040729 TCAATGAAACAACATCAGGAACATGT 59.959 34.615 0.00 0.00 35.94 3.21
4970 13210 5.069318 TCAGGAACATGTGATAACTTTGCA 58.931 37.500 0.00 0.00 0.00 4.08
4989 13229 4.425577 GCAGTTGCAGTTGCTAAGTAAT 57.574 40.909 14.99 0.00 42.66 1.89
4995 13235 5.429681 TGCAGTTGCTAAGTAATTCCCTA 57.570 39.130 5.62 0.00 42.66 3.53
4996 13236 5.183228 TGCAGTTGCTAAGTAATTCCCTAC 58.817 41.667 5.62 0.00 42.66 3.18
4997 13237 5.183228 GCAGTTGCTAAGTAATTCCCTACA 58.817 41.667 0.00 0.00 38.21 2.74
5023 13263 0.250252 TGAATCACTGCGCCACAAGA 60.250 50.000 4.18 0.00 0.00 3.02
5033 13273 1.269448 GCGCCACAAGATCCTGAAAAA 59.731 47.619 0.00 0.00 0.00 1.94
5035 13275 3.762779 CGCCACAAGATCCTGAAAAATC 58.237 45.455 0.00 0.00 0.00 2.17
5051 13291 8.457261 CCTGAAAAATCTGTATCTGAAAAGGAG 58.543 37.037 0.00 0.00 0.00 3.69
5054 13294 7.929941 AAAATCTGTATCTGAAAAGGAGGTC 57.070 36.000 0.00 0.00 0.00 3.85
5107 13347 1.154197 GGTTACCGAGAAACCAGCAC 58.846 55.000 8.19 0.00 44.83 4.40
5152 13392 4.825085 TCCACGTAAATTTCTCTGCCTTTT 59.175 37.500 0.00 0.00 0.00 2.27
5172 13412 7.012704 GCCTTTTGATGAAGCTTGATCTATGTA 59.987 37.037 23.68 3.41 0.00 2.29
5183 13423 6.443206 AGCTTGATCTATGTATAGCCATCCTT 59.557 38.462 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.043656 GCGGGAATGTTTATAACACTTATTTGC 60.044 37.037 0.00 0.00 45.50 3.68
28 29 7.971168 TGCGGGAATGTTTATAACACTTATTTG 59.029 33.333 0.00 0.00 45.50 2.32
251 255 4.888326 TGCCATGCCTAAAAATTGAACT 57.112 36.364 0.00 0.00 0.00 3.01
335 339 2.991190 GCAAATCCAACAATGCTCAGTG 59.009 45.455 0.00 0.00 35.93 3.66
381 390 5.875910 TCAGATTTTTAGGCATGGCAAATTG 59.124 36.000 22.64 16.36 0.00 2.32
402 411 7.541783 TGGATTTCGCTAAAAATTTGACATCAG 59.458 33.333 0.00 0.00 0.00 2.90
439 449 6.344500 CCCACTAAGATGCCTGTGATATATC 58.656 44.000 5.73 5.73 32.72 1.63
498 2124 9.221933 TCAAGGTTTAATTAAATTAGACTCGCA 57.778 29.630 13.54 0.00 32.28 5.10
536 2162 7.325694 GGCAAACATCTACTACCAGTAACTTA 58.674 38.462 0.00 0.00 29.00 2.24
673 2354 9.878737 ATAGGTGTACCATGTTCTACTATACTT 57.121 33.333 3.56 0.00 38.89 2.24
674 2355 9.298250 CATAGGTGTACCATGTTCTACTATACT 57.702 37.037 3.56 0.00 38.89 2.12
675 2356 8.027771 GCATAGGTGTACCATGTTCTACTATAC 58.972 40.741 3.56 0.00 38.89 1.47
676 2357 7.948447 AGCATAGGTGTACCATGTTCTACTATA 59.052 37.037 3.56 0.00 38.89 1.31
716 2400 1.723608 CGCTGATCGGACAGAGAGCT 61.724 60.000 5.48 0.00 39.39 4.09
920 2620 1.401199 GCTTTCCGAGCGTAGTACTCT 59.599 52.381 0.00 0.00 42.46 3.24
921 2621 1.825077 GCTTTCCGAGCGTAGTACTC 58.175 55.000 0.00 0.00 42.46 2.59
937 2637 0.319900 CGCCGGAGCTATATGTGCTT 60.320 55.000 5.05 0.00 41.30 3.91
973 2709 1.729470 CCGGATGCTGCTCTCGTACT 61.729 60.000 0.00 0.00 0.00 2.73
976 2712 2.130426 ATCCGGATGCTGCTCTCGT 61.130 57.895 18.33 0.00 0.00 4.18
988 2724 2.721859 CGTCATCTCGCATCCGGA 59.278 61.111 6.61 6.61 34.56 5.14
1012 2748 2.417515 CCTTCTTACTGCTCTCGTTCCC 60.418 54.545 0.00 0.00 0.00 3.97
1014 2750 3.503891 GACCTTCTTACTGCTCTCGTTC 58.496 50.000 0.00 0.00 0.00 3.95
1119 2855 4.856664 ACTTACAGAGTTGTCGTACTGTG 58.143 43.478 0.00 9.43 43.10 3.66
1164 2901 3.260740 CCTGTCAGATCAAGAGAGTTGC 58.739 50.000 0.00 0.00 0.00 4.17
1185 2922 2.230750 AGAAGAACGTAGGTACACCAGC 59.769 50.000 0.38 0.00 38.89 4.85
1192 2929 4.318332 TGACTCGAAGAAGAACGTAGGTA 58.682 43.478 0.00 0.00 34.09 3.08
1194 2931 3.826236 TGACTCGAAGAAGAACGTAGG 57.174 47.619 0.00 0.00 34.09 3.18
1249 2988 2.922740 AAAGTACGACACCACACCAT 57.077 45.000 0.00 0.00 0.00 3.55
1250 2989 2.093606 TGAAAAGTACGACACCACACCA 60.094 45.455 0.00 0.00 0.00 4.17
1255 2994 2.867287 TCGTGAAAAGTACGACACCA 57.133 45.000 0.00 0.00 44.65 4.17
1276 3015 3.068732 CCGTAGCTAGGTAAGGTTTACCC 59.931 52.174 21.55 0.00 38.33 3.69
1277 3016 3.068732 CCCGTAGCTAGGTAAGGTTTACC 59.931 52.174 25.74 9.47 37.13 2.85
1278 3017 3.491619 GCCCGTAGCTAGGTAAGGTTTAC 60.492 52.174 25.74 12.87 38.99 2.01
1279 3018 2.695147 GCCCGTAGCTAGGTAAGGTTTA 59.305 50.000 25.74 0.00 38.99 2.01
1280 3019 1.483827 GCCCGTAGCTAGGTAAGGTTT 59.516 52.381 25.74 0.00 38.99 3.27
1281 3020 1.117994 GCCCGTAGCTAGGTAAGGTT 58.882 55.000 25.74 0.00 38.99 3.50
1282 3021 2.818111 GCCCGTAGCTAGGTAAGGT 58.182 57.895 25.74 0.00 38.99 3.50
1321 3060 2.112815 GCGGAAAGATCCAACCCCG 61.113 63.158 0.00 0.00 46.97 5.73
1326 3065 4.331968 ACAGTTAATGCGGAAAGATCCAA 58.668 39.130 0.00 0.00 46.97 3.53
1368 3107 6.530019 AATTGCCTCCACGAAATTAAGAAT 57.470 33.333 0.00 0.00 0.00 2.40
1394 3133 6.293407 CGTATCAGACAAAATCAAGGTGTGTT 60.293 38.462 0.00 0.00 0.00 3.32
1409 3149 3.375922 TCATTCACTACGCGTATCAGACA 59.624 43.478 20.91 9.06 0.00 3.41
1481 3222 4.981806 AACACACAAAACATGCAGTACT 57.018 36.364 0.00 0.00 0.00 2.73
1490 3231 8.645730 TTTACGTCTATCTAACACACAAAACA 57.354 30.769 0.00 0.00 0.00 2.83
1560 3389 9.626045 ATCAAGATTTTGACGAAAGGATTTTAC 57.374 29.630 0.00 0.00 45.54 2.01
1629 3479 2.033299 CGGGCTGCAACAAATATGGTAG 59.967 50.000 0.50 0.00 0.00 3.18
1630 3480 2.020720 CGGGCTGCAACAAATATGGTA 58.979 47.619 0.50 0.00 0.00 3.25
1631 3481 0.817013 CGGGCTGCAACAAATATGGT 59.183 50.000 0.50 0.00 0.00 3.55
1647 3497 3.739167 CTCCTCGAGAGCTACGGG 58.261 66.667 15.71 8.91 35.31 5.28
1702 3610 8.741101 CTCAAGATGAGGATTCGATTAACTAG 57.259 38.462 0.00 0.00 40.71 2.57
1721 3640 6.220726 TGATCGATATTGTGAACCTCAAGA 57.779 37.500 0.00 0.00 0.00 3.02
1722 3641 5.464722 CCTGATCGATATTGTGAACCTCAAG 59.535 44.000 0.00 0.00 0.00 3.02
1758 3681 8.200792 AGAGGTGAGCTTAAAGTATCACTAATG 58.799 37.037 12.34 0.00 41.40 1.90
1853 4033 6.611613 TCTCTCAACAGATGGACTAACAAT 57.388 37.500 0.00 0.00 0.00 2.71
1856 4073 7.341445 ACTATCTCTCAACAGATGGACTAAC 57.659 40.000 1.27 0.00 35.47 2.34
1859 4076 6.668645 AGTACTATCTCTCAACAGATGGACT 58.331 40.000 0.00 0.00 35.47 3.85
1862 4079 9.906660 GAAATAGTACTATCTCTCAACAGATGG 57.093 37.037 15.72 0.00 37.39 3.51
1898 5425 8.742188 CATTTGTCACCGCAAACATATTATTAC 58.258 33.333 0.00 0.00 40.58 1.89
1913 5440 4.673441 TGTTGGTTTTACATTTGTCACCG 58.327 39.130 0.00 0.00 0.00 4.94
2014 5556 3.244112 ACCTGAAGACGGAACCTTGTTAG 60.244 47.826 0.00 0.00 0.00 2.34
2046 5588 3.313526 AGTTAAAGCTAGGAATGCATGCG 59.686 43.478 14.09 0.00 0.00 4.73
2055 5599 2.823747 TGCACGAGAGTTAAAGCTAGGA 59.176 45.455 0.00 0.00 46.40 2.94
2085 5634 5.277538 CCAGGATTTCAGCTTAATTAGACGC 60.278 44.000 0.00 0.00 0.00 5.19
2123 5672 1.275573 ACAAGGAAAGAGGACGTAGCC 59.724 52.381 0.00 0.00 0.00 3.93
2172 5721 0.792640 CTGGCTACGTCAACTGCTTG 59.207 55.000 0.00 0.00 0.00 4.01
2410 5959 1.802069 GTTCTGCAGGGAGAGTCAAC 58.198 55.000 15.13 4.34 0.00 3.18
2433 5982 4.100498 TCCCGAACAAGTCTAACTTCAACT 59.900 41.667 0.00 0.00 36.03 3.16
2459 6012 0.524862 CTGCACATGAGCCAAACCTC 59.475 55.000 12.78 0.00 0.00 3.85
2524 6077 6.262273 GCTGACTCCTTAGCTATAGCCTATAG 59.738 46.154 21.17 13.43 43.38 1.31
2525 6078 6.123651 GCTGACTCCTTAGCTATAGCCTATA 58.876 44.000 21.17 4.60 43.38 1.31
2526 6079 4.953579 GCTGACTCCTTAGCTATAGCCTAT 59.046 45.833 21.17 5.65 43.38 2.57
2527 6080 4.337145 GCTGACTCCTTAGCTATAGCCTA 58.663 47.826 21.17 10.01 43.38 3.93
2528 6081 3.161866 GCTGACTCCTTAGCTATAGCCT 58.838 50.000 21.17 10.97 43.38 4.58
2529 6082 2.094957 CGCTGACTCCTTAGCTATAGCC 60.095 54.545 21.17 3.86 43.38 3.93
2678 6236 7.393234 AGAATGCTGTAAATGCTAGTAAAACCA 59.607 33.333 0.00 0.00 0.00 3.67
2704 6262 2.952978 ACACCGCACCTCAAAACATAAA 59.047 40.909 0.00 0.00 0.00 1.40
2719 6277 3.125316 TGTAACTTCACTACAACACCGC 58.875 45.455 0.00 0.00 0.00 5.68
2740 6298 2.166664 GTGTTGATCGGGCTCTACTTCT 59.833 50.000 0.00 0.00 0.00 2.85
2753 6311 6.256757 GCTTCACTAGTTATCAGGTGTTGATC 59.743 42.308 0.00 0.00 43.03 2.92
2755 6313 5.011635 TGCTTCACTAGTTATCAGGTGTTGA 59.988 40.000 0.00 0.00 40.85 3.18
2787 6345 2.838736 TCAATATCAGCTCCCGAAAGC 58.161 47.619 1.19 1.19 42.82 3.51
2838 6396 1.007387 GGCAAGCAACTCCGTTTGG 60.007 57.895 0.00 0.00 0.00 3.28
2876 6434 6.147437 TGTTACCTGAATTTACCCCAGAAT 57.853 37.500 0.00 0.00 0.00 2.40
2988 6546 2.697761 GCTGCCACATCTGCCACAG 61.698 63.158 0.00 0.00 0.00 3.66
3093 6665 3.740397 CCACGTAGACGGTGCCGA 61.740 66.667 18.16 0.00 44.95 5.54
3189 6761 4.783621 GGGCCAGCTGCATCGTCA 62.784 66.667 8.66 0.00 43.89 4.35
3406 6978 1.741770 CCACTTGCGGCTGTAGTCC 60.742 63.158 0.00 0.00 0.00 3.85
4156 7728 2.028385 GGTGACGTCCTGGTAGATTTGT 60.028 50.000 14.12 0.00 0.00 2.83
4229 8471 7.196331 ACAAAGAGCAAAAATTACAGAGTGAC 58.804 34.615 0.00 0.00 0.00 3.67
4235 8479 6.833342 AGCAACAAAGAGCAAAAATTACAG 57.167 33.333 0.00 0.00 0.00 2.74
4236 8480 6.019961 CGAAGCAACAAAGAGCAAAAATTACA 60.020 34.615 0.00 0.00 0.00 2.41
4322 8566 5.045869 TCCCTCCGTCTCAAAATGTAAGATT 60.046 40.000 0.00 0.00 0.00 2.40
4407 8651 2.036346 ACACAAGCCTTTGCCATTTCTC 59.964 45.455 0.00 0.00 37.85 2.87
4409 8653 2.137523 CACACAAGCCTTTGCCATTTC 58.862 47.619 0.00 0.00 37.85 2.17
4458 9110 2.803956 TCCTGTCCGTGAGTCTAACAT 58.196 47.619 0.00 0.00 0.00 2.71
4461 9113 3.367646 AGATCCTGTCCGTGAGTCTAA 57.632 47.619 0.00 0.00 0.00 2.10
4478 9134 6.938030 TGTCTACAATTGAAAAACCCGTAGAT 59.062 34.615 13.59 0.00 36.99 1.98
4489 9145 4.826733 ACAGGCACATGTCTACAATTGAAA 59.173 37.500 13.59 0.00 0.00 2.69
4517 9173 7.865530 TGCACCCTAGTCTCCAATAATAATA 57.134 36.000 0.00 0.00 0.00 0.98
4518 9174 6.763715 TGCACCCTAGTCTCCAATAATAAT 57.236 37.500 0.00 0.00 0.00 1.28
4519 9175 6.409234 CCTTGCACCCTAGTCTCCAATAATAA 60.409 42.308 0.00 0.00 0.00 1.40
4520 9176 5.071788 CCTTGCACCCTAGTCTCCAATAATA 59.928 44.000 0.00 0.00 0.00 0.98
4521 9177 4.141390 CCTTGCACCCTAGTCTCCAATAAT 60.141 45.833 0.00 0.00 0.00 1.28
4545 9201 0.404040 TGGATTCCACAGGGTGAACC 59.596 55.000 0.00 0.00 35.23 3.62
4546 9202 1.826385 CTGGATTCCACAGGGTGAAC 58.174 55.000 0.00 0.00 35.23 3.18
4554 9210 1.619363 CCCTCCCCTGGATTCCACA 60.619 63.158 0.00 0.00 0.00 4.17
4558 9214 2.044620 ACCCCCTCCCCTGGATTC 59.955 66.667 0.00 0.00 0.00 2.52
4563 9219 1.007607 AAATTACACCCCCTCCCCTG 58.992 55.000 0.00 0.00 0.00 4.45
4624 9280 5.164292 CGTTAATTTGACGTGCAGTGATTTG 60.164 40.000 0.00 0.00 35.88 2.32
4629 9285 3.513462 TCGTTAATTTGACGTGCAGTG 57.487 42.857 12.61 0.00 41.08 3.66
4630 9286 5.849357 TTATCGTTAATTTGACGTGCAGT 57.151 34.783 12.61 0.00 41.08 4.40
4631 9287 6.304126 ACTTTATCGTTAATTTGACGTGCAG 58.696 36.000 12.61 7.97 41.08 4.41
4633 9289 6.461698 CAGACTTTATCGTTAATTTGACGTGC 59.538 38.462 12.61 0.00 41.08 5.34
4634 9290 6.953743 CCAGACTTTATCGTTAATTTGACGTG 59.046 38.462 12.61 2.63 41.08 4.49
4636 9292 6.456449 CCCCAGACTTTATCGTTAATTTGACG 60.456 42.308 7.34 7.34 41.62 4.35
4637 9293 6.373495 ACCCCAGACTTTATCGTTAATTTGAC 59.627 38.462 0.00 0.00 0.00 3.18
4639 9295 6.373216 TCACCCCAGACTTTATCGTTAATTTG 59.627 38.462 0.00 0.00 0.00 2.32
4658 12897 1.681264 CAGTTTGGTTTGAGTCACCCC 59.319 52.381 0.00 0.00 32.71 4.95
4663 12902 1.609072 GGCCTCAGTTTGGTTTGAGTC 59.391 52.381 0.00 0.00 39.30 3.36
4676 12915 3.431725 GCGAAAACCCGGCCTCAG 61.432 66.667 0.00 0.00 0.00 3.35
4694 12933 0.253044 TGTGCTAGCTGAATGGGGTC 59.747 55.000 17.23 0.00 0.00 4.46
4697 12936 0.666913 GCATGTGCTAGCTGAATGGG 59.333 55.000 17.23 0.37 38.21 4.00
4715 12954 1.599916 GGGAGTCGAATGTAGTAGCGC 60.600 57.143 0.00 0.00 0.00 5.92
4753 12992 1.376037 GTGAGTTCGGGAAGGCCTG 60.376 63.158 5.69 0.00 42.30 4.85
4757 12996 1.961793 TTTGTGTGAGTTCGGGAAGG 58.038 50.000 0.00 0.00 0.00 3.46
4760 12999 1.790755 CGATTTGTGTGAGTTCGGGA 58.209 50.000 0.00 0.00 0.00 5.14
4762 13001 0.179250 CGCGATTTGTGTGAGTTCGG 60.179 55.000 0.00 0.00 0.00 4.30
4770 13009 2.741517 TGATTGTCATCGCGATTTGTGT 59.258 40.909 21.14 5.78 31.08 3.72
4783 13022 6.398095 CAGCCCGTATATTAGATGATTGTCA 58.602 40.000 0.00 0.00 0.00 3.58
4801 13040 0.396435 TATTCTATGGTGGCAGCCCG 59.604 55.000 14.97 2.46 0.00 6.13
4824 13063 6.180472 GGTTCAACCTCTTAATCAGGATGAA 58.820 40.000 16.42 16.42 45.61 2.57
4831 13070 5.476599 CCATTGTGGTTCAACCTCTTAATCA 59.523 40.000 8.40 0.00 39.58 2.57
4847 13086 2.095213 CGAACGGACAATACCATTGTGG 59.905 50.000 9.16 4.23 45.02 4.17
4851 13090 3.934068 AGTTCGAACGGACAATACCATT 58.066 40.909 21.87 0.00 0.00 3.16
4864 13103 5.398416 GGTGCAACAATCTTTTAGTTCGAAC 59.602 40.000 20.71 20.71 39.98 3.95
4901 13140 6.296026 ACTTTGTATGGACAGTTGAAGCTTA 58.704 36.000 0.00 0.00 36.76 3.09
4912 13151 0.878416 GCCGCAACTTTGTATGGACA 59.122 50.000 0.00 0.00 0.00 4.02
4935 13174 6.040729 TCACATGTTCCTGATGTTGTTTCATT 59.959 34.615 0.00 0.00 31.46 2.57
4936 13175 5.535783 TCACATGTTCCTGATGTTGTTTCAT 59.464 36.000 0.00 0.00 31.46 2.57
4970 13210 4.459337 GGGAATTACTTAGCAACTGCAACT 59.541 41.667 4.22 0.00 45.16 3.16
4976 13216 7.195374 TCATGTAGGGAATTACTTAGCAACT 57.805 36.000 0.00 0.00 0.00 3.16
4978 13218 7.801104 TGATCATGTAGGGAATTACTTAGCAA 58.199 34.615 0.00 0.00 0.00 3.91
4986 13226 8.663167 AGTGATTCATGATCATGTAGGGAATTA 58.337 33.333 30.01 17.69 46.01 1.40
4989 13229 6.293698 CAGTGATTCATGATCATGTAGGGAA 58.706 40.000 30.01 19.20 46.01 3.97
4995 13235 2.289820 GCGCAGTGATTCATGATCATGT 59.710 45.455 30.01 15.87 46.01 3.21
4996 13236 2.350484 GGCGCAGTGATTCATGATCATG 60.350 50.000 26.79 26.79 46.01 3.07
4997 13237 1.878088 GGCGCAGTGATTCATGATCAT 59.122 47.619 10.83 1.18 46.01 2.45
5023 13263 8.964772 CCTTTTCAGATACAGATTTTTCAGGAT 58.035 33.333 0.00 0.00 0.00 3.24
5033 13273 5.396213 GCAGACCTCCTTTTCAGATACAGAT 60.396 44.000 0.00 0.00 0.00 2.90
5035 13275 4.081198 AGCAGACCTCCTTTTCAGATACAG 60.081 45.833 0.00 0.00 0.00 2.74
5051 13291 0.535335 TTACCGATGGTGAGCAGACC 59.465 55.000 0.00 0.00 36.19 3.85
5054 13294 1.478510 AGACTTACCGATGGTGAGCAG 59.521 52.381 7.60 0.00 42.15 4.24
5107 13347 5.335035 GGATGGTCAAATTGTTGCCATTTTG 60.335 40.000 15.74 6.37 44.59 2.44
5131 13371 5.757886 TCAAAAGGCAGAGAAATTTACGTG 58.242 37.500 0.00 0.00 0.00 4.49
5152 13392 7.038799 TGGCTATACATAGATCAAGCTTCATCA 60.039 37.037 13.20 0.00 32.05 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.