Multiple sequence alignment - TraesCS7D01G235700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G235700 chr7D 100.000 4038 0 0 1 4038 198624735 198620698 0.000000e+00 7457.0
1 TraesCS7D01G235700 chr7D 93.220 118 8 0 150 267 578069837 578069954 1.490000e-39 174.0
2 TraesCS7D01G235700 chr7D 86.517 89 9 1 3745 3833 117242318 117242233 1.190000e-15 95.3
3 TraesCS7D01G235700 chr7B 94.115 2719 102 19 350 3036 162778157 162780849 0.000000e+00 4082.0
4 TraesCS7D01G235700 chr7B 85.294 340 28 9 3715 4038 162833676 162834009 8.370000e-87 331.0
5 TraesCS7D01G235700 chr7B 89.333 150 16 0 1 150 162776455 162776604 5.330000e-44 189.0
6 TraesCS7D01G235700 chr7B 76.303 422 39 28 3169 3540 162780994 162781404 6.940000e-38 169.0
7 TraesCS7D01G235700 chr7B 90.909 55 5 0 3486 3540 162835273 162835327 1.560000e-09 75.0
8 TraesCS7D01G235700 chr7A 93.906 2724 120 27 351 3069 207902865 207900183 0.000000e+00 4069.0
9 TraesCS7D01G235700 chr7A 74.745 491 52 36 3079 3540 207899880 207899433 1.940000e-33 154.0
10 TraesCS7D01G235700 chr2B 80.390 1178 213 16 1866 3034 703623809 703622641 0.000000e+00 880.0
11 TraesCS7D01G235700 chr2B 94.118 119 7 0 151 269 587232331 587232213 8.920000e-42 182.0
12 TraesCS7D01G235700 chr2B 86.301 146 17 3 151 293 387105619 387105764 5.400000e-34 156.0
13 TraesCS7D01G235700 chr2B 83.761 117 12 5 3718 3831 719440848 719440736 1.990000e-18 104.0
14 TraesCS7D01G235700 chr2A 80.289 1177 216 15 1866 3034 718384314 718383146 0.000000e+00 874.0
15 TraesCS7D01G235700 chr2A 83.465 127 15 5 3708 3831 751762701 751762824 3.300000e-21 113.0
16 TraesCS7D01G235700 chr2D 80.000 1180 214 20 1866 3034 584257380 584256212 0.000000e+00 852.0
17 TraesCS7D01G235700 chr3A 79.795 1173 225 12 1868 3034 16631612 16632778 0.000000e+00 843.0
18 TraesCS7D01G235700 chr3A 82.353 119 15 5 3717 3833 60473344 60473230 9.240000e-17 99.0
19 TraesCS7D01G235700 chr3B 79.366 1168 227 13 1874 3034 14525610 14524450 0.000000e+00 809.0
20 TraesCS7D01G235700 chr3B 79.299 1169 226 14 1874 3034 26752892 26751732 0.000000e+00 804.0
21 TraesCS7D01G235700 chr3B 94.118 119 7 0 149 267 588418173 588418291 8.920000e-42 182.0
22 TraesCS7D01G235700 chr3B 91.200 125 10 1 143 267 426998980 426998857 6.940000e-38 169.0
23 TraesCS7D01G235700 chr3D 79.216 1174 230 14 1868 3034 10454963 10456129 0.000000e+00 804.0
24 TraesCS7D01G235700 chr3D 80.870 115 10 8 3715 3826 110270423 110270528 3.350000e-11 80.5
25 TraesCS7D01G235700 chr5B 94.017 117 7 0 151 267 472739665 472739549 1.150000e-40 178.0
26 TraesCS7D01G235700 chr6D 93.220 118 8 0 150 267 348647455 348647338 1.490000e-39 174.0
27 TraesCS7D01G235700 chr6D 83.168 101 12 4 3735 3834 389593470 389593374 2.000000e-13 87.9
28 TraesCS7D01G235700 chr4B 93.162 117 8 0 151 267 613958803 613958687 5.370000e-39 172.0
29 TraesCS7D01G235700 chr5A 91.200 125 11 0 150 274 594556823 594556947 1.930000e-38 171.0
30 TraesCS7D01G235700 chr1A 84.167 120 7 8 3718 3830 497487076 497486962 5.520000e-19 106.0
31 TraesCS7D01G235700 chr6B 80.469 128 15 5 3708 3834 24348195 24348313 5.560000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G235700 chr7D 198620698 198624735 4037 True 7457.0 7457 100.000000 1 4038 1 chr7D.!!$R2 4037
1 TraesCS7D01G235700 chr7B 162776455 162781404 4949 False 1480.0 4082 86.583667 1 3540 3 chr7B.!!$F1 3539
2 TraesCS7D01G235700 chr7B 162833676 162835327 1651 False 203.0 331 88.101500 3486 4038 2 chr7B.!!$F2 552
3 TraesCS7D01G235700 chr7A 207899433 207902865 3432 True 2111.5 4069 84.325500 351 3540 2 chr7A.!!$R1 3189
4 TraesCS7D01G235700 chr2B 703622641 703623809 1168 True 880.0 880 80.390000 1866 3034 1 chr2B.!!$R2 1168
5 TraesCS7D01G235700 chr2A 718383146 718384314 1168 True 874.0 874 80.289000 1866 3034 1 chr2A.!!$R1 1168
6 TraesCS7D01G235700 chr2D 584256212 584257380 1168 True 852.0 852 80.000000 1866 3034 1 chr2D.!!$R1 1168
7 TraesCS7D01G235700 chr3A 16631612 16632778 1166 False 843.0 843 79.795000 1868 3034 1 chr3A.!!$F1 1166
8 TraesCS7D01G235700 chr3B 14524450 14525610 1160 True 809.0 809 79.366000 1874 3034 1 chr3B.!!$R1 1160
9 TraesCS7D01G235700 chr3B 26751732 26752892 1160 True 804.0 804 79.299000 1874 3034 1 chr3B.!!$R2 1160
10 TraesCS7D01G235700 chr3D 10454963 10456129 1166 False 804.0 804 79.216000 1868 3034 1 chr3D.!!$F1 1166

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
172 173 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.00 44.66 2.12 F
968 2375 0.736325 GGAATCGGTCGTGAGTGTGG 60.736 60.0 0.00 0.00 0.00 4.17 F
1208 2615 0.898789 GTCTTCGGTGAGGACCTCCA 60.899 60.0 19.11 4.36 40.58 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1524 2931 0.038526 ACTCACCTGGCTTCGTTACG 60.039 55.0 0.00 0.00 0.00 3.18 R
2341 3777 0.907230 AGTGCACCTCCTCCTCCTTC 60.907 60.0 14.63 0.00 0.00 3.46 R
3164 4910 0.393402 TGCTCTGGCCAGCAATGTAG 60.393 55.0 28.91 19.32 46.65 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.652421 AGTAGAGATTTACCCGCAATACCA 59.348 41.667 0.00 0.00 0.00 3.25
59 60 1.501170 CTGGGAGATCTAGGGGAGTCA 59.499 57.143 0.00 0.00 0.00 3.41
75 76 1.351017 AGTCAAGGATTTCCAAGCGGA 59.649 47.619 0.00 0.00 40.60 5.54
98 99 1.152963 GGCCCACCATTAGTCGCAT 60.153 57.895 0.00 0.00 35.26 4.73
106 107 2.027192 ACCATTAGTCGCATCACACCTT 60.027 45.455 0.00 0.00 0.00 3.50
118 119 1.216678 TCACACCTTTCCACAACCCAT 59.783 47.619 0.00 0.00 0.00 4.00
124 125 2.288152 CCTTTCCACAACCCATGTTTCG 60.288 50.000 0.00 0.00 41.46 3.46
130 131 1.068610 ACAACCCATGTTTCGCAATCG 60.069 47.619 0.00 0.00 40.06 3.34
146 147 3.657634 CAATCGGTCTGGTCCATATCAG 58.342 50.000 0.00 0.00 34.92 2.90
150 151 4.480115 TCGGTCTGGTCCATATCAGTTAT 58.520 43.478 0.00 0.00 35.19 1.89
151 152 5.637127 TCGGTCTGGTCCATATCAGTTATA 58.363 41.667 0.00 0.00 35.19 0.98
153 154 5.477291 CGGTCTGGTCCATATCAGTTATACT 59.523 44.000 0.00 0.00 35.19 2.12
154 155 6.349445 CGGTCTGGTCCATATCAGTTATACTC 60.349 46.154 0.00 0.00 35.19 2.59
155 156 6.071278 GGTCTGGTCCATATCAGTTATACTCC 60.071 46.154 0.00 0.00 35.19 3.85
156 157 6.017192 TCTGGTCCATATCAGTTATACTCCC 58.983 44.000 0.00 0.00 35.19 4.30
157 158 5.977533 TGGTCCATATCAGTTATACTCCCT 58.022 41.667 0.00 0.00 0.00 4.20
158 159 6.017192 TGGTCCATATCAGTTATACTCCCTC 58.983 44.000 0.00 0.00 0.00 4.30
159 160 5.422650 GGTCCATATCAGTTATACTCCCTCC 59.577 48.000 0.00 0.00 0.00 4.30
160 161 5.125739 GTCCATATCAGTTATACTCCCTCCG 59.874 48.000 0.00 0.00 0.00 4.63
162 163 5.125739 CCATATCAGTTATACTCCCTCCGTC 59.874 48.000 0.00 0.00 0.00 4.79
164 165 1.607628 CAGTTATACTCCCTCCGTCCG 59.392 57.143 0.00 0.00 0.00 4.79
165 166 0.957362 GTTATACTCCCTCCGTCCGG 59.043 60.000 0.00 0.00 0.00 5.14
166 167 0.846015 TTATACTCCCTCCGTCCGGA 59.154 55.000 0.00 0.00 42.90 5.14
167 168 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
171 172 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
172 173 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
176 177 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
177 178 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
178 179 1.135315 CCGTCCGGAAATACTTGTCGA 60.135 52.381 5.23 0.00 37.50 4.20
182 183 4.084433 CGTCCGGAAATACTTGTCGAAAAA 60.084 41.667 5.23 0.00 0.00 1.94
239 240 4.826274 ATCTACATACATCCATTCCCGG 57.174 45.455 0.00 0.00 0.00 5.73
241 242 1.814429 ACATACATCCATTCCCGGGA 58.186 50.000 22.63 22.63 39.14 5.14
242 243 1.420138 ACATACATCCATTCCCGGGAC 59.580 52.381 26.87 0.00 37.23 4.46
244 245 1.585895 TACATCCATTCCCGGGACAA 58.414 50.000 26.87 10.85 37.23 3.18
250 251 2.578940 TCCATTCCCGGGACAAGTATTT 59.421 45.455 26.87 0.00 0.00 1.40
252 253 3.380320 CCATTCCCGGGACAAGTATTTTC 59.620 47.826 26.87 0.00 0.00 2.29
253 254 2.389962 TCCCGGGACAAGTATTTTCG 57.610 50.000 22.63 0.00 0.00 3.46
257 258 1.657094 CGGGACAAGTATTTTCGGACG 59.343 52.381 0.00 0.00 0.00 4.79
258 259 2.004733 GGGACAAGTATTTTCGGACGG 58.995 52.381 0.00 0.00 0.00 4.79
259 260 2.354003 GGGACAAGTATTTTCGGACGGA 60.354 50.000 0.00 0.00 0.00 4.69
260 261 2.928116 GGACAAGTATTTTCGGACGGAG 59.072 50.000 0.00 0.00 0.00 4.63
262 263 3.846360 ACAAGTATTTTCGGACGGAGAG 58.154 45.455 0.00 0.00 0.00 3.20
264 265 4.106197 CAAGTATTTTCGGACGGAGAGAG 58.894 47.826 0.00 0.00 0.00 3.20
267 268 4.575645 AGTATTTTCGGACGGAGAGAGTAG 59.424 45.833 0.00 0.00 0.00 2.57
269 270 2.486472 TTCGGACGGAGAGAGTAGTT 57.514 50.000 0.00 0.00 0.00 2.24
293 481 9.758651 GTTCACAATCCAAAAATTAGGTAAACT 57.241 29.630 0.00 0.00 0.00 2.66
301 489 8.861086 TCCAAAAATTAGGTAAACTATTGTGCA 58.139 29.630 0.00 0.00 0.00 4.57
308 496 8.568676 TTAGGTAAACTATTGTGCATGCTTAA 57.431 30.769 20.33 13.96 0.00 1.85
327 515 1.204146 AGTATCTCGGTGTTGCCCAT 58.796 50.000 0.00 0.00 0.00 4.00
345 533 2.224378 CCATAGGGCTGAGTGTATGTGG 60.224 54.545 0.00 0.00 0.00 4.17
348 536 2.764269 AGGGCTGAGTGTATGTGGTAT 58.236 47.619 0.00 0.00 0.00 2.73
366 1763 5.994054 GTGGTATATGTGATTGTGAGCTGAT 59.006 40.000 0.00 0.00 0.00 2.90
413 1813 2.701423 TGTGTCCTAACTGTGCCTAACA 59.299 45.455 0.00 0.00 37.22 2.41
440 1840 1.207488 TCCACACCTTCCCTCCCATG 61.207 60.000 0.00 0.00 0.00 3.66
485 1885 1.202076 GGCAGTATCGAAGCAAGCAAC 60.202 52.381 0.00 0.00 0.00 4.17
489 1889 3.127548 CAGTATCGAAGCAAGCAACCAAT 59.872 43.478 0.00 0.00 0.00 3.16
641 2045 4.532834 GGATTAGGTGCCAAGTCCAAATA 58.467 43.478 0.00 0.00 0.00 1.40
916 2322 4.643387 GCTTGGCCTCGTGGGTGT 62.643 66.667 3.32 0.00 37.43 4.16
917 2323 2.669569 CTTGGCCTCGTGGGTGTG 60.670 66.667 3.32 0.00 37.43 3.82
918 2324 4.947147 TTGGCCTCGTGGGTGTGC 62.947 66.667 3.32 0.00 37.43 4.57
962 2368 3.454573 CCGGGGAATCGGTCGTGA 61.455 66.667 0.00 0.00 44.60 4.35
968 2375 0.736325 GGAATCGGTCGTGAGTGTGG 60.736 60.000 0.00 0.00 0.00 4.17
976 2383 2.972505 GTGAGTGTGGCCGTGTGG 60.973 66.667 0.00 0.00 38.77 4.17
1098 2505 2.795110 GCTGAGCAGGATCGAGCCT 61.795 63.158 18.52 18.52 39.37 4.58
1208 2615 0.898789 GTCTTCGGTGAGGACCTCCA 60.899 60.000 19.11 4.36 40.58 3.86
1221 2628 2.305927 GGACCTCCAATCCAGTTCTTCA 59.694 50.000 0.00 0.00 36.15 3.02
1484 2891 3.714144 TCGAAGAAAAGGAGGAGGAGAT 58.286 45.455 0.00 0.00 0.00 2.75
1524 2931 0.960861 CCCAAAAAGAGGAGACCGCC 60.961 60.000 0.00 0.00 0.00 6.13
1530 2937 1.930908 AAGAGGAGACCGCCGTAACG 61.931 60.000 0.00 0.00 0.00 3.18
1586 2993 3.231818 TCTACCTCAATCCGGGATCTTC 58.768 50.000 10.56 0.00 0.00 2.87
1601 3008 6.311200 CCGGGATCTTCAAATGAAATGAAAAC 59.689 38.462 0.00 0.00 36.43 2.43
1602 3009 6.867816 CGGGATCTTCAAATGAAATGAAAACA 59.132 34.615 0.00 0.00 36.43 2.83
1603 3010 7.546667 CGGGATCTTCAAATGAAATGAAAACAT 59.453 33.333 0.00 0.00 36.43 2.71
1647 3064 4.307032 TGATTTCCCAAAGAGCTTAGCT 57.693 40.909 6.37 6.37 43.88 3.32
1715 3143 8.677300 CCCAAATAGTACACTACTTCGTACTTA 58.323 37.037 7.45 0.00 44.56 2.24
1716 3144 9.713740 CCAAATAGTACACTACTTCGTACTTAG 57.286 37.037 7.45 0.00 44.56 2.18
1719 3147 9.883142 AATAGTACACTACTTCGTACTTAGTCT 57.117 33.333 7.45 0.00 44.56 3.24
1720 3148 9.883142 ATAGTACACTACTTCGTACTTAGTCTT 57.117 33.333 7.45 0.00 44.56 3.01
1722 3150 9.712305 AGTACACTACTTCGTACTTAGTCTTAA 57.288 33.333 0.00 0.00 44.56 1.85
1723 3151 9.748100 GTACACTACTTCGTACTTAGTCTTAAC 57.252 37.037 0.00 0.00 36.02 2.01
1770 3198 9.315363 CCTCTTCCATGGTATACTAATCTAGTT 57.685 37.037 12.58 0.00 40.14 2.24
1772 3200 9.877222 TCTTCCATGGTATACTAATCTAGTTCA 57.123 33.333 12.58 0.00 40.14 3.18
1831 3267 7.335627 ACTTATGATCCGTATTTTGGTCAGAA 58.664 34.615 0.00 0.00 0.00 3.02
1832 3268 7.495934 ACTTATGATCCGTATTTTGGTCAGAAG 59.504 37.037 5.79 5.79 39.28 2.85
1833 3269 5.414789 TGATCCGTATTTTGGTCAGAAGA 57.585 39.130 0.00 0.00 0.00 2.87
1849 3285 2.936498 AGAAGATGGTGGCGATAAAACG 59.064 45.455 0.00 0.00 0.00 3.60
2032 3468 1.068250 CGGGGAGAAGAAGATCCGC 59.932 63.158 0.00 0.00 43.26 5.54
2806 4242 0.887387 TGGCCACAAACTTCTACGGC 60.887 55.000 0.00 0.00 38.85 5.68
2930 4366 3.274586 CCATGCAGATCCACGCGG 61.275 66.667 12.47 0.00 0.00 6.46
2931 4367 3.274586 CATGCAGATCCACGCGGG 61.275 66.667 12.47 6.05 38.37 6.13
2971 4407 2.036992 GGAGATCGTCATGAAGCAGGAT 59.963 50.000 3.49 0.00 0.00 3.24
3001 4437 1.742761 ATGTCACCAGATTCAAGCCG 58.257 50.000 0.00 0.00 0.00 5.52
3036 4472 1.078918 TCGACCAGCTGCAGGATTG 60.079 57.895 18.62 6.83 0.00 2.67
3037 4473 1.078918 CGACCAGCTGCAGGATTGA 60.079 57.895 18.62 0.00 0.00 2.57
3038 4474 0.463295 CGACCAGCTGCAGGATTGAT 60.463 55.000 18.62 0.00 0.00 2.57
3039 4475 1.760192 GACCAGCTGCAGGATTGATT 58.240 50.000 18.62 0.00 0.00 2.57
3071 4507 3.495670 TTGTCTGGGTTGTTTCGTTTG 57.504 42.857 0.00 0.00 0.00 2.93
3077 4551 1.477295 GGGTTGTTTCGTTTGGTTGGA 59.523 47.619 0.00 0.00 0.00 3.53
3092 4572 5.474578 TGGTTGGAGTATAGCTGATGATC 57.525 43.478 0.00 0.00 0.00 2.92
3151 4897 9.952030 TTGATTCCATTTCTGTTGTATACTACA 57.048 29.630 17.34 17.34 36.79 2.74
3152 4898 9.599866 TGATTCCATTTCTGTTGTATACTACAG 57.400 33.333 30.09 30.09 46.23 2.74
3163 4909 8.552083 TGTTGTATACTACAGAAGACGAGTTA 57.448 34.615 14.93 0.00 40.24 2.24
3164 4910 8.446273 TGTTGTATACTACAGAAGACGAGTTAC 58.554 37.037 14.93 0.00 40.24 2.50
3165 4911 8.663911 GTTGTATACTACAGAAGACGAGTTACT 58.336 37.037 11.87 0.00 40.24 2.24
3166 4912 9.875691 TTGTATACTACAGAAGACGAGTTACTA 57.124 33.333 4.17 0.00 40.24 1.82
3175 4921 4.111375 AGACGAGTTACTACATTGCTGG 57.889 45.455 0.00 0.00 0.00 4.85
3193 4939 0.035630 GGCCAGAGCACTCAAGATGT 60.036 55.000 0.00 0.00 42.56 3.06
3195 4941 2.548875 GCCAGAGCACTCAAGATGTAG 58.451 52.381 0.00 0.00 39.53 2.74
3196 4942 2.093764 GCCAGAGCACTCAAGATGTAGT 60.094 50.000 0.00 0.00 39.53 2.73
3197 4943 3.131223 GCCAGAGCACTCAAGATGTAGTA 59.869 47.826 0.00 0.00 39.53 1.82
3198 4944 4.677584 CCAGAGCACTCAAGATGTAGTAC 58.322 47.826 0.00 0.00 0.00 2.73
3199 4945 4.346970 CAGAGCACTCAAGATGTAGTACG 58.653 47.826 0.00 0.00 0.00 3.67
3200 4946 4.011023 AGAGCACTCAAGATGTAGTACGT 58.989 43.478 0.00 0.00 0.00 3.57
3201 4947 4.098055 AGCACTCAAGATGTAGTACGTG 57.902 45.455 0.00 0.00 0.00 4.49
3202 4948 3.506455 AGCACTCAAGATGTAGTACGTGT 59.494 43.478 0.00 0.00 0.00 4.49
3203 4949 4.698780 AGCACTCAAGATGTAGTACGTGTA 59.301 41.667 0.00 0.00 0.00 2.90
3204 4950 4.792189 GCACTCAAGATGTAGTACGTGTAC 59.208 45.833 0.00 1.90 36.35 2.90
3206 4952 6.022208 CACTCAAGATGTAGTACGTGTACTG 58.978 44.000 20.13 5.25 45.25 2.74
3207 4953 5.936372 ACTCAAGATGTAGTACGTGTACTGA 59.064 40.000 20.13 8.97 45.25 3.41
3208 4954 6.429078 ACTCAAGATGTAGTACGTGTACTGAA 59.571 38.462 20.13 10.10 45.25 3.02
3209 4955 6.839033 TCAAGATGTAGTACGTGTACTGAAG 58.161 40.000 20.13 5.86 45.25 3.02
3210 4956 6.652062 TCAAGATGTAGTACGTGTACTGAAGA 59.348 38.462 20.13 3.12 45.25 2.87
3211 4957 6.665474 AGATGTAGTACGTGTACTGAAGAG 57.335 41.667 20.13 0.00 45.25 2.85
3212 4958 4.675190 TGTAGTACGTGTACTGAAGAGC 57.325 45.455 20.13 6.41 45.25 4.09
3213 4959 4.067192 TGTAGTACGTGTACTGAAGAGCA 58.933 43.478 20.13 8.39 45.25 4.26
3214 4960 4.698780 TGTAGTACGTGTACTGAAGAGCAT 59.301 41.667 20.13 0.00 45.25 3.79
3225 4971 9.491934 GTGTACTGAAGAGCATATATACATACG 57.508 37.037 0.00 0.00 0.00 3.06
3229 4975 8.409371 ACTGAAGAGCATATATACATACGGATG 58.591 37.037 5.94 5.94 39.16 3.51
3242 4988 1.878953 ACGGATGAAACTGTCGCTTT 58.121 45.000 0.00 0.00 0.00 3.51
3243 4989 2.218603 ACGGATGAAACTGTCGCTTTT 58.781 42.857 0.00 0.00 0.00 2.27
3244 4990 2.032030 ACGGATGAAACTGTCGCTTTTG 60.032 45.455 0.00 0.00 0.00 2.44
3247 4993 3.251004 GGATGAAACTGTCGCTTTTGTCT 59.749 43.478 0.00 0.00 0.00 3.41
3264 5020 8.940952 GCTTTTGTCTCTGAATGAGTAAAGTAT 58.059 33.333 0.00 0.00 43.13 2.12
3267 5023 7.834068 TGTCTCTGAATGAGTAAAGTATTGC 57.166 36.000 0.00 0.00 43.13 3.56
3268 5024 7.386059 TGTCTCTGAATGAGTAAAGTATTGCA 58.614 34.615 0.00 0.00 43.13 4.08
3290 5054 0.320421 TGTCTTAGCCTTGTCACGCC 60.320 55.000 0.00 0.00 0.00 5.68
3308 5072 2.545526 CGCCGATCAAAGACTGCAATAT 59.454 45.455 0.00 0.00 0.00 1.28
3311 5075 5.277297 CGCCGATCAAAGACTGCAATATTTA 60.277 40.000 0.00 0.00 0.00 1.40
3312 5076 6.138761 GCCGATCAAAGACTGCAATATTTAG 58.861 40.000 0.00 0.00 0.00 1.85
3315 5079 7.059817 CGATCAAAGACTGCAATATTTAGTCG 58.940 38.462 17.54 6.94 44.16 4.18
3316 5080 7.043391 CGATCAAAGACTGCAATATTTAGTCGA 60.043 37.037 12.92 12.35 44.16 4.20
3317 5081 7.525688 TCAAAGACTGCAATATTTAGTCGAG 57.474 36.000 17.54 13.41 44.16 4.04
3318 5082 7.097192 TCAAAGACTGCAATATTTAGTCGAGT 58.903 34.615 17.54 0.00 44.16 4.18
3319 5083 6.893958 AAGACTGCAATATTTAGTCGAGTG 57.106 37.500 17.54 0.00 44.16 3.51
3327 5091 6.470160 CAATATTTAGTCGAGTGTTGACAGC 58.530 40.000 2.10 0.00 38.83 4.40
3346 5110 1.874562 GAGCTGTCCACTCGTACGT 59.125 57.895 16.05 0.00 0.00 3.57
3349 5113 1.058404 GCTGTCCACTCGTACGTTTC 58.942 55.000 16.05 2.44 0.00 2.78
3350 5114 1.324718 CTGTCCACTCGTACGTTTCG 58.675 55.000 16.05 0.00 0.00 3.46
3423 5213 1.052124 TAGCCCAACTGGATACCCGG 61.052 60.000 0.00 0.00 44.64 5.73
3426 5216 2.727392 CCAACTGGATACCCGGCGA 61.727 63.158 9.30 0.00 42.81 5.54
3427 5217 1.219664 CAACTGGATACCCGGCGAA 59.780 57.895 9.30 0.00 42.81 4.70
3446 5238 5.181245 GGCGAATAAAAAGCAGCTGGATATA 59.819 40.000 17.12 0.00 0.00 0.86
3493 5292 3.976793 ATCAACGGATGATTGCACATC 57.023 42.857 8.44 8.44 46.85 3.06
3500 5299 3.494251 CGGATGATTGCACATCGTTGATA 59.506 43.478 10.27 0.00 45.07 2.15
3529 5328 3.143338 TGGTGACACGCTGCCTAA 58.857 55.556 0.00 0.00 33.40 2.69
3540 5339 5.778862 ACACGCTGCCTAAAAACATTATTT 58.221 33.333 0.00 0.00 0.00 1.40
3541 5340 5.633182 ACACGCTGCCTAAAAACATTATTTG 59.367 36.000 0.00 0.00 0.00 2.32
3542 5341 5.062058 CACGCTGCCTAAAAACATTATTTGG 59.938 40.000 0.00 0.00 0.00 3.28
3543 5342 4.566360 CGCTGCCTAAAAACATTATTTGGG 59.434 41.667 0.00 0.00 40.31 4.12
3549 5348 7.920160 CCTAAAAACATTATTTGGGCACATT 57.080 32.000 0.00 0.00 32.65 2.71
3550 5349 7.973601 CCTAAAAACATTATTTGGGCACATTC 58.026 34.615 0.00 0.00 32.65 2.67
3551 5350 7.823799 CCTAAAAACATTATTTGGGCACATTCT 59.176 33.333 0.00 0.00 32.65 2.40
3552 5351 7.671495 AAAAACATTATTTGGGCACATTCTC 57.329 32.000 0.00 0.00 0.00 2.87
3553 5352 6.610075 AAACATTATTTGGGCACATTCTCT 57.390 33.333 0.00 0.00 0.00 3.10
3554 5353 6.610075 AACATTATTTGGGCACATTCTCTT 57.390 33.333 0.00 0.00 0.00 2.85
3555 5354 5.969423 ACATTATTTGGGCACATTCTCTTG 58.031 37.500 0.00 0.00 0.00 3.02
3556 5355 5.716228 ACATTATTTGGGCACATTCTCTTGA 59.284 36.000 0.00 0.00 0.00 3.02
3557 5356 5.643379 TTATTTGGGCACATTCTCTTGAC 57.357 39.130 0.00 0.00 0.00 3.18
3558 5357 1.522668 TTGGGCACATTCTCTTGACG 58.477 50.000 0.00 0.00 0.00 4.35
3559 5358 0.321564 TGGGCACATTCTCTTGACGG 60.322 55.000 0.00 0.00 0.00 4.79
3560 5359 1.648467 GGGCACATTCTCTTGACGGC 61.648 60.000 0.00 0.00 0.00 5.68
3561 5360 0.955428 GGCACATTCTCTTGACGGCA 60.955 55.000 0.00 0.00 0.00 5.69
3562 5361 0.874390 GCACATTCTCTTGACGGCAA 59.126 50.000 2.36 2.36 0.00 4.52
3563 5362 1.266718 GCACATTCTCTTGACGGCAAA 59.733 47.619 4.62 0.00 32.73 3.68
3564 5363 2.666619 GCACATTCTCTTGACGGCAAAG 60.667 50.000 4.62 6.00 32.73 2.77
3565 5364 2.095567 CACATTCTCTTGACGGCAAAGG 60.096 50.000 4.62 0.19 32.73 3.11
3566 5365 1.135575 CATTCTCTTGACGGCAAAGGC 60.136 52.381 4.62 0.00 40.13 4.35
3567 5366 0.108585 TTCTCTTGACGGCAAAGGCT 59.891 50.000 4.62 0.00 40.87 4.58
3568 5367 0.108585 TCTCTTGACGGCAAAGGCTT 59.891 50.000 4.62 0.00 40.87 4.35
3569 5368 0.239347 CTCTTGACGGCAAAGGCTTG 59.761 55.000 4.62 0.00 40.87 4.01
3570 5369 0.179032 TCTTGACGGCAAAGGCTTGA 60.179 50.000 4.62 0.00 40.87 3.02
3571 5370 0.667993 CTTGACGGCAAAGGCTTGAA 59.332 50.000 4.62 0.00 40.87 2.69
3572 5371 0.667993 TTGACGGCAAAGGCTTGAAG 59.332 50.000 0.00 0.00 40.87 3.02
3573 5372 0.179032 TGACGGCAAAGGCTTGAAGA 60.179 50.000 0.00 0.00 40.87 2.87
3574 5373 1.168714 GACGGCAAAGGCTTGAAGAT 58.831 50.000 0.00 0.00 40.87 2.40
3575 5374 1.131315 GACGGCAAAGGCTTGAAGATC 59.869 52.381 0.00 0.00 40.87 2.75
3576 5375 1.167851 CGGCAAAGGCTTGAAGATCA 58.832 50.000 0.00 0.00 40.87 2.92
3577 5376 1.135575 CGGCAAAGGCTTGAAGATCAC 60.136 52.381 0.00 0.00 40.87 3.06
3578 5377 1.135575 GGCAAAGGCTTGAAGATCACG 60.136 52.381 0.00 0.00 40.87 4.35
3579 5378 1.135575 GCAAAGGCTTGAAGATCACGG 60.136 52.381 0.00 0.00 34.14 4.94
3580 5379 1.135575 CAAAGGCTTGAAGATCACGGC 60.136 52.381 0.00 2.73 40.69 5.68
3581 5380 1.986413 AGGCTTGAAGATCACGGCT 59.014 52.632 7.03 7.03 44.59 5.52
3582 5381 0.326264 AGGCTTGAAGATCACGGCTT 59.674 50.000 7.03 0.00 46.65 4.35
3583 5382 0.729690 GGCTTGAAGATCACGGCTTC 59.270 55.000 0.00 0.00 38.03 3.86
3584 5383 1.677217 GGCTTGAAGATCACGGCTTCT 60.677 52.381 0.00 0.00 41.71 2.85
3585 5384 2.079925 GCTTGAAGATCACGGCTTCTT 58.920 47.619 0.00 4.10 41.71 2.52
3586 5385 2.485814 GCTTGAAGATCACGGCTTCTTT 59.514 45.455 0.00 0.00 41.71 2.52
3587 5386 3.425492 GCTTGAAGATCACGGCTTCTTTC 60.425 47.826 0.00 0.00 41.71 2.62
3588 5387 3.685139 TGAAGATCACGGCTTCTTTCT 57.315 42.857 0.00 0.00 41.71 2.52
3589 5388 4.008074 TGAAGATCACGGCTTCTTTCTT 57.992 40.909 0.00 0.00 41.71 2.52
3590 5389 3.997021 TGAAGATCACGGCTTCTTTCTTC 59.003 43.478 0.00 10.36 41.71 2.87
3591 5390 2.611518 AGATCACGGCTTCTTTCTTCG 58.388 47.619 0.00 0.00 0.00 3.79
3592 5391 1.661112 GATCACGGCTTCTTTCTTCGG 59.339 52.381 0.00 0.00 0.00 4.30
3593 5392 0.320421 TCACGGCTTCTTTCTTCGGG 60.320 55.000 0.00 0.00 0.00 5.14
3594 5393 1.003718 ACGGCTTCTTTCTTCGGGG 60.004 57.895 0.00 0.00 0.00 5.73
3595 5394 1.003718 CGGCTTCTTTCTTCGGGGT 60.004 57.895 0.00 0.00 0.00 4.95
3596 5395 1.298859 CGGCTTCTTTCTTCGGGGTG 61.299 60.000 0.00 0.00 0.00 4.61
3597 5396 1.587043 GGCTTCTTTCTTCGGGGTGC 61.587 60.000 0.00 0.00 0.00 5.01
3598 5397 0.889186 GCTTCTTTCTTCGGGGTGCA 60.889 55.000 0.00 0.00 0.00 4.57
3599 5398 0.875059 CTTCTTTCTTCGGGGTGCAC 59.125 55.000 8.80 8.80 0.00 4.57
3600 5399 0.882927 TTCTTTCTTCGGGGTGCACG 60.883 55.000 11.45 0.00 0.00 5.34
3601 5400 1.597027 CTTTCTTCGGGGTGCACGT 60.597 57.895 11.45 0.00 0.00 4.49
3602 5401 1.566018 CTTTCTTCGGGGTGCACGTC 61.566 60.000 11.45 5.48 0.00 4.34
3603 5402 2.313051 TTTCTTCGGGGTGCACGTCA 62.313 55.000 11.45 0.00 0.00 4.35
3604 5403 2.280524 CTTCGGGGTGCACGTCAA 60.281 61.111 11.45 0.00 0.00 3.18
3605 5404 2.589442 TTCGGGGTGCACGTCAAC 60.589 61.111 11.45 0.00 0.00 3.18
3606 5405 3.387225 TTCGGGGTGCACGTCAACA 62.387 57.895 11.45 0.00 32.80 3.33
3607 5406 2.871216 TTCGGGGTGCACGTCAACAA 62.871 55.000 11.45 0.00 32.80 2.83
3608 5407 2.473760 CGGGGTGCACGTCAACAAA 61.474 57.895 11.45 0.00 32.80 2.83
3609 5408 1.358759 GGGGTGCACGTCAACAAAG 59.641 57.895 11.45 0.00 32.80 2.77
3610 5409 1.358759 GGGTGCACGTCAACAAAGG 59.641 57.895 11.45 0.00 32.80 3.11
3611 5410 1.098712 GGGTGCACGTCAACAAAGGA 61.099 55.000 11.45 0.00 32.80 3.36
3612 5411 0.736053 GGTGCACGTCAACAAAGGAA 59.264 50.000 11.45 0.00 31.06 3.36
3613 5412 1.268539 GGTGCACGTCAACAAAGGAAG 60.269 52.381 11.45 0.00 31.06 3.46
3614 5413 1.400494 GTGCACGTCAACAAAGGAAGT 59.600 47.619 0.00 0.00 0.00 3.01
3615 5414 2.088423 TGCACGTCAACAAAGGAAGTT 58.912 42.857 0.00 0.00 0.00 2.66
3616 5415 2.159448 TGCACGTCAACAAAGGAAGTTG 60.159 45.455 0.00 0.00 45.82 3.16
3623 5422 3.382083 AACAAAGGAAGTTGACAGGGT 57.618 42.857 0.00 0.00 32.59 4.34
3624 5423 2.932261 ACAAAGGAAGTTGACAGGGTC 58.068 47.619 0.00 0.00 32.59 4.46
3625 5424 2.509964 ACAAAGGAAGTTGACAGGGTCT 59.490 45.455 0.00 0.00 33.15 3.85
3626 5425 3.142174 CAAAGGAAGTTGACAGGGTCTC 58.858 50.000 0.00 0.00 33.15 3.36
3627 5426 2.103153 AGGAAGTTGACAGGGTCTCA 57.897 50.000 0.00 0.00 33.15 3.27
3628 5427 1.974236 AGGAAGTTGACAGGGTCTCAG 59.026 52.381 0.00 0.00 33.15 3.35
3629 5428 1.002544 GGAAGTTGACAGGGTCTCAGG 59.997 57.143 0.00 0.00 33.15 3.86
3630 5429 1.971357 GAAGTTGACAGGGTCTCAGGA 59.029 52.381 0.00 0.00 33.15 3.86
3631 5430 2.103153 AGTTGACAGGGTCTCAGGAA 57.897 50.000 0.00 0.00 33.15 3.36
3632 5431 2.408565 AGTTGACAGGGTCTCAGGAAA 58.591 47.619 0.00 0.00 33.15 3.13
3633 5432 2.370189 AGTTGACAGGGTCTCAGGAAAG 59.630 50.000 0.00 0.00 33.15 2.62
3634 5433 1.352083 TGACAGGGTCTCAGGAAAGG 58.648 55.000 0.00 0.00 33.15 3.11
3635 5434 0.615850 GACAGGGTCTCAGGAAAGGG 59.384 60.000 0.00 0.00 0.00 3.95
3636 5435 0.193574 ACAGGGTCTCAGGAAAGGGA 59.806 55.000 0.00 0.00 0.00 4.20
3637 5436 0.908198 CAGGGTCTCAGGAAAGGGAG 59.092 60.000 0.00 0.00 0.00 4.30
3638 5437 0.252927 AGGGTCTCAGGAAAGGGAGG 60.253 60.000 0.00 0.00 0.00 4.30
3639 5438 1.275421 GGGTCTCAGGAAAGGGAGGG 61.275 65.000 0.00 0.00 0.00 4.30
3640 5439 0.252742 GGTCTCAGGAAAGGGAGGGA 60.253 60.000 0.00 0.00 0.00 4.20
3641 5440 1.199615 GTCTCAGGAAAGGGAGGGAG 58.800 60.000 0.00 0.00 0.00 4.30
3642 5441 0.618968 TCTCAGGAAAGGGAGGGAGC 60.619 60.000 0.00 0.00 0.00 4.70
3643 5442 0.911525 CTCAGGAAAGGGAGGGAGCA 60.912 60.000 0.00 0.00 0.00 4.26
3644 5443 1.201429 TCAGGAAAGGGAGGGAGCAC 61.201 60.000 0.00 0.00 0.00 4.40
3645 5444 2.269241 GGAAAGGGAGGGAGCACG 59.731 66.667 0.00 0.00 0.00 5.34
3646 5445 2.593956 GGAAAGGGAGGGAGCACGT 61.594 63.158 0.00 0.00 0.00 4.49
3647 5446 1.262640 GGAAAGGGAGGGAGCACGTA 61.263 60.000 0.00 0.00 0.00 3.57
3648 5447 0.831307 GAAAGGGAGGGAGCACGTAT 59.169 55.000 0.00 0.00 0.00 3.06
3649 5448 0.831307 AAAGGGAGGGAGCACGTATC 59.169 55.000 0.00 0.00 0.00 2.24
3650 5449 1.049289 AAGGGAGGGAGCACGTATCC 61.049 60.000 9.93 9.93 35.99 2.59
3651 5450 1.760875 GGGAGGGAGCACGTATCCA 60.761 63.158 17.99 0.00 38.70 3.41
3652 5451 1.335132 GGGAGGGAGCACGTATCCAA 61.335 60.000 17.99 0.00 38.70 3.53
3653 5452 0.759346 GGAGGGAGCACGTATCCAAT 59.241 55.000 17.99 8.08 38.70 3.16
3654 5453 1.541233 GGAGGGAGCACGTATCCAATG 60.541 57.143 17.99 0.00 38.70 2.82
3655 5454 1.412710 GAGGGAGCACGTATCCAATGA 59.587 52.381 17.99 0.00 38.70 2.57
3656 5455 2.037772 GAGGGAGCACGTATCCAATGAT 59.962 50.000 17.99 1.87 38.70 2.45
3657 5456 2.439507 AGGGAGCACGTATCCAATGATT 59.560 45.455 17.99 0.00 38.70 2.57
3658 5457 3.646162 AGGGAGCACGTATCCAATGATTA 59.354 43.478 17.99 0.00 38.70 1.75
3659 5458 4.287067 AGGGAGCACGTATCCAATGATTAT 59.713 41.667 17.99 0.00 38.70 1.28
3660 5459 5.003804 GGGAGCACGTATCCAATGATTATT 58.996 41.667 17.99 0.00 38.70 1.40
3661 5460 6.013725 AGGGAGCACGTATCCAATGATTATTA 60.014 38.462 17.99 0.00 38.70 0.98
3662 5461 6.823689 GGGAGCACGTATCCAATGATTATTAT 59.176 38.462 17.99 0.00 38.70 1.28
3663 5462 7.985184 GGGAGCACGTATCCAATGATTATTATA 59.015 37.037 17.99 0.00 38.70 0.98
3664 5463 9.547753 GGAGCACGTATCCAATGATTATTATAT 57.452 33.333 12.86 0.00 36.79 0.86
3687 5486 5.578005 AGTCTTGCTATAAGTCTTACGCA 57.422 39.130 12.15 12.15 0.00 5.24
3688 5487 5.962433 AGTCTTGCTATAAGTCTTACGCAA 58.038 37.500 21.00 21.00 35.20 4.85
3689 5488 5.805994 AGTCTTGCTATAAGTCTTACGCAAC 59.194 40.000 19.52 14.62 33.83 4.17
3690 5489 5.805994 GTCTTGCTATAAGTCTTACGCAACT 59.194 40.000 19.52 0.00 33.83 3.16
3691 5490 5.805486 TCTTGCTATAAGTCTTACGCAACTG 59.195 40.000 19.52 14.14 33.83 3.16
3692 5491 5.319140 TGCTATAAGTCTTACGCAACTGA 57.681 39.130 13.28 0.00 0.00 3.41
3693 5492 5.340803 TGCTATAAGTCTTACGCAACTGAG 58.659 41.667 13.28 0.00 0.00 3.35
3694 5493 5.124936 TGCTATAAGTCTTACGCAACTGAGA 59.875 40.000 13.28 0.00 0.00 3.27
3695 5494 5.456173 GCTATAAGTCTTACGCAACTGAGAC 59.544 44.000 9.66 0.00 38.98 3.36
3698 5497 3.643763 AGTCTTACGCAACTGAGACTTG 58.356 45.455 0.00 0.00 44.68 3.16
3699 5498 2.731976 GTCTTACGCAACTGAGACTTGG 59.268 50.000 0.00 0.00 36.47 3.61
3700 5499 2.364324 TCTTACGCAACTGAGACTTGGT 59.636 45.455 0.00 0.00 0.00 3.67
3701 5500 2.902705 TACGCAACTGAGACTTGGTT 57.097 45.000 0.00 0.00 0.00 3.67
3702 5501 2.902705 ACGCAACTGAGACTTGGTTA 57.097 45.000 0.00 0.00 0.00 2.85
3703 5502 3.188159 ACGCAACTGAGACTTGGTTAA 57.812 42.857 0.00 0.00 0.00 2.01
3704 5503 3.131396 ACGCAACTGAGACTTGGTTAAG 58.869 45.455 0.00 0.00 39.86 1.85
3705 5504 2.480419 CGCAACTGAGACTTGGTTAAGG 59.520 50.000 0.00 0.00 38.26 2.69
3706 5505 2.226674 GCAACTGAGACTTGGTTAAGGC 59.773 50.000 0.00 0.00 42.59 4.35
3712 5511 2.861147 GACTTGGTTAAGGCTGAGGT 57.139 50.000 0.00 0.00 38.97 3.85
3713 5512 3.975168 GACTTGGTTAAGGCTGAGGTA 57.025 47.619 0.00 0.00 38.97 3.08
3714 5513 4.489306 GACTTGGTTAAGGCTGAGGTAT 57.511 45.455 0.00 0.00 38.97 2.73
3715 5514 4.844884 GACTTGGTTAAGGCTGAGGTATT 58.155 43.478 0.00 0.00 38.97 1.89
3716 5515 5.985911 GACTTGGTTAAGGCTGAGGTATTA 58.014 41.667 0.00 0.00 38.97 0.98
3717 5516 5.742063 ACTTGGTTAAGGCTGAGGTATTAC 58.258 41.667 0.00 0.00 38.26 1.89
3718 5517 5.249852 ACTTGGTTAAGGCTGAGGTATTACA 59.750 40.000 0.00 0.00 38.26 2.41
3719 5518 5.968676 TGGTTAAGGCTGAGGTATTACAT 57.031 39.130 0.00 0.00 0.00 2.29
3720 5519 6.321821 TGGTTAAGGCTGAGGTATTACATT 57.678 37.500 0.00 0.00 0.00 2.71
3721 5520 6.119536 TGGTTAAGGCTGAGGTATTACATTG 58.880 40.000 0.00 0.00 0.00 2.82
3722 5521 6.069905 TGGTTAAGGCTGAGGTATTACATTGA 60.070 38.462 0.00 0.00 0.00 2.57
3723 5522 6.483640 GGTTAAGGCTGAGGTATTACATTGAG 59.516 42.308 0.00 0.00 0.00 3.02
3724 5523 5.957771 AAGGCTGAGGTATTACATTGAGA 57.042 39.130 0.00 0.00 0.00 3.27
3725 5524 6.506538 AAGGCTGAGGTATTACATTGAGAT 57.493 37.500 0.00 0.00 0.00 2.75
3726 5525 6.506538 AGGCTGAGGTATTACATTGAGATT 57.493 37.500 0.00 0.00 0.00 2.40
3727 5526 6.529220 AGGCTGAGGTATTACATTGAGATTC 58.471 40.000 0.00 0.00 0.00 2.52
3728 5527 6.100279 AGGCTGAGGTATTACATTGAGATTCA 59.900 38.462 0.00 0.00 0.00 2.57
3729 5528 6.939163 GGCTGAGGTATTACATTGAGATTCAT 59.061 38.462 0.00 0.00 0.00 2.57
3730 5529 7.094890 GGCTGAGGTATTACATTGAGATTCATG 60.095 40.741 0.00 0.00 0.00 3.07
3731 5530 7.572724 GCTGAGGTATTACATTGAGATTCATGC 60.573 40.741 0.00 0.00 0.00 4.06
3732 5531 7.281841 TGAGGTATTACATTGAGATTCATGCA 58.718 34.615 0.00 0.00 0.00 3.96
3733 5532 7.774625 TGAGGTATTACATTGAGATTCATGCAA 59.225 33.333 0.00 0.00 0.00 4.08
3734 5533 8.523915 AGGTATTACATTGAGATTCATGCAAA 57.476 30.769 0.00 0.00 0.00 3.68
3735 5534 8.970020 AGGTATTACATTGAGATTCATGCAAAA 58.030 29.630 0.00 0.00 0.00 2.44
3736 5535 9.754382 GGTATTACATTGAGATTCATGCAAAAT 57.246 29.630 0.00 0.00 0.00 1.82
3783 5582 9.891828 TCACTTTTGTATGTTATGTCATTTGAC 57.108 29.630 3.72 3.72 44.97 3.18
3784 5583 9.897744 CACTTTTGTATGTTATGTCATTTGACT 57.102 29.630 11.67 1.15 44.99 3.41
3789 5588 9.936759 TTGTATGTTATGTCATTTGACTACTGA 57.063 29.630 11.67 0.00 44.99 3.41
3790 5589 9.586435 TGTATGTTATGTCATTTGACTACTGAG 57.414 33.333 11.67 0.00 44.99 3.35
3791 5590 9.803315 GTATGTTATGTCATTTGACTACTGAGA 57.197 33.333 11.67 0.00 44.99 3.27
3793 5592 9.896645 ATGTTATGTCATTTGACTACTGAGATT 57.103 29.630 11.67 0.00 44.99 2.40
3794 5593 9.725019 TGTTATGTCATTTGACTACTGAGATTT 57.275 29.630 11.67 0.00 44.99 2.17
3795 5594 9.979270 GTTATGTCATTTGACTACTGAGATTTG 57.021 33.333 11.67 0.00 44.99 2.32
3796 5595 7.621428 ATGTCATTTGACTACTGAGATTTGG 57.379 36.000 11.67 0.00 44.99 3.28
3797 5596 6.533730 TGTCATTTGACTACTGAGATTTGGT 58.466 36.000 11.67 0.00 44.99 3.67
3798 5597 6.998074 TGTCATTTGACTACTGAGATTTGGTT 59.002 34.615 11.67 0.00 44.99 3.67
3799 5598 8.154203 TGTCATTTGACTACTGAGATTTGGTTA 58.846 33.333 11.67 0.00 44.99 2.85
3800 5599 8.999431 GTCATTTGACTACTGAGATTTGGTTAA 58.001 33.333 3.45 0.00 41.65 2.01
3801 5600 9.567776 TCATTTGACTACTGAGATTTGGTTAAA 57.432 29.630 0.00 0.00 0.00 1.52
3813 5612 6.969828 GATTTGGTTAAATCTCAGTCGACT 57.030 37.500 13.58 13.58 45.57 4.18
3814 5613 6.727824 ATTTGGTTAAATCTCAGTCGACTG 57.272 37.500 34.76 34.76 37.33 3.51
3815 5614 6.590292 GATTTGGTTAAATCTCAGTCGACTGA 59.410 38.462 38.24 38.24 45.57 3.41
3826 5625 2.265647 GTCGACTGAGACTTAGCCAC 57.734 55.000 8.70 0.00 38.09 5.01
3827 5626 1.540267 GTCGACTGAGACTTAGCCACA 59.460 52.381 8.70 0.00 38.09 4.17
3828 5627 1.540267 TCGACTGAGACTTAGCCACAC 59.460 52.381 0.00 0.00 0.00 3.82
3829 5628 1.402984 CGACTGAGACTTAGCCACACC 60.403 57.143 0.00 0.00 0.00 4.16
3830 5629 0.977395 ACTGAGACTTAGCCACACCC 59.023 55.000 0.00 0.00 0.00 4.61
3831 5630 1.270907 CTGAGACTTAGCCACACCCT 58.729 55.000 0.00 0.00 0.00 4.34
3832 5631 1.625818 CTGAGACTTAGCCACACCCTT 59.374 52.381 0.00 0.00 0.00 3.95
3833 5632 2.039084 CTGAGACTTAGCCACACCCTTT 59.961 50.000 0.00 0.00 0.00 3.11
3834 5633 2.224523 TGAGACTTAGCCACACCCTTTG 60.225 50.000 0.00 0.00 0.00 2.77
3835 5634 1.073923 AGACTTAGCCACACCCTTTGG 59.926 52.381 0.00 0.00 37.17 3.28
3837 5636 2.039348 GACTTAGCCACACCCTTTGGTA 59.961 50.000 0.00 0.00 45.57 3.25
3838 5637 2.647802 ACTTAGCCACACCCTTTGGTAT 59.352 45.455 0.00 0.00 45.57 2.73
3839 5638 3.847780 ACTTAGCCACACCCTTTGGTATA 59.152 43.478 0.00 0.00 45.57 1.47
3840 5639 4.477213 ACTTAGCCACACCCTTTGGTATAT 59.523 41.667 0.00 0.00 45.57 0.86
3841 5640 3.297134 AGCCACACCCTTTGGTATATG 57.703 47.619 0.00 0.00 45.57 1.78
3842 5641 2.580783 AGCCACACCCTTTGGTATATGT 59.419 45.455 0.00 0.00 45.57 2.29
3843 5642 2.949644 GCCACACCCTTTGGTATATGTC 59.050 50.000 0.00 0.00 45.57 3.06
3844 5643 3.551846 CCACACCCTTTGGTATATGTCC 58.448 50.000 0.00 0.00 45.57 4.02
3845 5644 3.202151 CCACACCCTTTGGTATATGTCCT 59.798 47.826 0.00 0.00 45.57 3.85
3846 5645 4.199310 CACACCCTTTGGTATATGTCCTG 58.801 47.826 0.00 0.00 45.57 3.86
3847 5646 3.202151 ACACCCTTTGGTATATGTCCTGG 59.798 47.826 0.00 0.00 45.57 4.45
3848 5647 3.458118 CACCCTTTGGTATATGTCCTGGA 59.542 47.826 0.00 0.00 45.57 3.86
3849 5648 3.458487 ACCCTTTGGTATATGTCCTGGAC 59.542 47.826 19.96 19.96 45.45 4.02
3850 5649 3.494398 CCCTTTGGTATATGTCCTGGACG 60.494 52.174 21.15 3.50 34.95 4.79
3851 5650 3.134081 CCTTTGGTATATGTCCTGGACGT 59.866 47.826 23.95 23.95 34.95 4.34
3852 5651 3.812156 TTGGTATATGTCCTGGACGTG 57.188 47.619 27.72 0.00 34.95 4.49
3853 5652 2.742348 TGGTATATGTCCTGGACGTGT 58.258 47.619 27.72 23.82 34.95 4.49
3854 5653 2.691526 TGGTATATGTCCTGGACGTGTC 59.308 50.000 27.72 17.59 34.95 3.67
3855 5654 2.957006 GGTATATGTCCTGGACGTGTCT 59.043 50.000 27.72 15.93 34.95 3.41
3856 5655 3.243434 GGTATATGTCCTGGACGTGTCTG 60.243 52.174 27.72 0.00 34.95 3.51
3857 5656 0.530744 TATGTCCTGGACGTGTCTGC 59.469 55.000 27.72 0.90 34.95 4.26
3858 5657 2.430921 GTCCTGGACGTGTCTGCG 60.431 66.667 11.71 0.00 37.94 5.18
3859 5658 4.357947 TCCTGGACGTGTCTGCGC 62.358 66.667 0.00 0.00 34.88 6.09
3860 5659 4.363990 CCTGGACGTGTCTGCGCT 62.364 66.667 9.73 0.00 34.88 5.92
3861 5660 2.566529 CTGGACGTGTCTGCGCTA 59.433 61.111 9.73 0.00 34.88 4.26
3862 5661 1.515088 CTGGACGTGTCTGCGCTAG 60.515 63.158 9.73 4.58 34.88 3.42
3863 5662 2.881352 GGACGTGTCTGCGCTAGC 60.881 66.667 9.73 4.06 45.41 3.42
3881 5680 7.902032 GCGCTAGCGTTATATATTTTATTCCA 58.098 34.615 35.21 0.00 42.09 3.53
3882 5681 8.385111 GCGCTAGCGTTATATATTTTATTCCAA 58.615 33.333 35.21 0.00 42.09 3.53
3910 5709 8.158169 ACATGTCATTTAACATACTAGCATGG 57.842 34.615 7.85 0.00 37.78 3.66
3911 5710 7.775093 ACATGTCATTTAACATACTAGCATGGT 59.225 33.333 7.85 1.62 37.78 3.55
3912 5711 8.623903 CATGTCATTTAACATACTAGCATGGTT 58.376 33.333 1.12 2.03 37.78 3.67
3913 5712 8.574251 TGTCATTTAACATACTAGCATGGTTT 57.426 30.769 1.12 0.00 0.00 3.27
3914 5713 9.019656 TGTCATTTAACATACTAGCATGGTTTT 57.980 29.630 1.12 0.00 0.00 2.43
3915 5714 9.855021 GTCATTTAACATACTAGCATGGTTTTT 57.145 29.630 1.12 0.00 0.00 1.94
3995 5794 9.737427 TTGAGAATATACTTTTCGAGACAGATC 57.263 33.333 0.00 0.00 0.00 2.75
3996 5795 9.126151 TGAGAATATACTTTTCGAGACAGATCT 57.874 33.333 0.00 0.00 38.15 2.75
4005 5804 9.307121 ACTTTTCGAGACAGATCTAAACATATG 57.693 33.333 0.00 0.00 34.34 1.78
4006 5805 9.521503 CTTTTCGAGACAGATCTAAACATATGA 57.478 33.333 10.38 0.00 34.34 2.15
4015 5814 9.817809 ACAGATCTAAACATATGATTTACACGT 57.182 29.630 10.38 0.00 0.00 4.49
4020 5819 9.863845 TCTAAACATATGATTTACACGTTCTCA 57.136 29.630 10.38 0.00 0.00 3.27
4023 5822 7.715265 ACATATGATTTACACGTTCTCATCC 57.285 36.000 10.38 0.00 0.00 3.51
4024 5823 7.500992 ACATATGATTTACACGTTCTCATCCT 58.499 34.615 10.38 0.00 0.00 3.24
4025 5824 8.638873 ACATATGATTTACACGTTCTCATCCTA 58.361 33.333 10.38 0.00 0.00 2.94
4026 5825 9.476202 CATATGATTTACACGTTCTCATCCTAA 57.524 33.333 0.00 0.00 0.00 2.69
4028 5827 8.964476 ATGATTTACACGTTCTCATCCTAAAT 57.036 30.769 0.00 0.00 0.00 1.40
4034 5833 9.661563 TTACACGTTCTCATCCTAAATATTTGT 57.338 29.630 11.05 0.00 0.00 2.83
4035 5834 8.197988 ACACGTTCTCATCCTAAATATTTGTC 57.802 34.615 11.05 0.00 0.00 3.18
4036 5835 7.822334 ACACGTTCTCATCCTAAATATTTGTCA 59.178 33.333 11.05 0.00 0.00 3.58
4037 5836 8.116753 CACGTTCTCATCCTAAATATTTGTCAC 58.883 37.037 11.05 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 6.206634 CAGATTATATTTGTGGTATTGCGGGT 59.793 38.462 0.00 0.00 0.00 5.28
28 29 7.404396 CCCCTAGATCTCCCAGATTATATTTGT 59.596 40.741 0.00 0.00 34.53 2.83
59 60 0.323451 GGGTCCGCTTGGAAATCCTT 60.323 55.000 0.44 0.00 45.42 3.36
75 76 3.416880 CTAATGGTGGGCCGGGGT 61.417 66.667 2.18 0.00 37.67 4.95
81 82 0.463654 TGATGCGACTAATGGTGGGC 60.464 55.000 0.00 0.00 0.00 5.36
98 99 0.626382 TGGGTTGTGGAAAGGTGTGA 59.374 50.000 0.00 0.00 0.00 3.58
106 107 0.671251 GCGAAACATGGGTTGTGGAA 59.329 50.000 0.00 0.00 38.99 3.53
118 119 0.250124 ACCAGACCGATTGCGAAACA 60.250 50.000 0.00 0.00 40.82 2.83
124 125 2.224281 TGATATGGACCAGACCGATTGC 60.224 50.000 0.00 0.00 0.00 3.56
130 131 6.071278 GGAGTATAACTGATATGGACCAGACC 60.071 46.154 0.00 0.00 34.65 3.85
146 147 0.957362 CCGGACGGAGGGAGTATAAC 59.043 60.000 4.40 0.00 37.50 1.89
150 151 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
151 152 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
153 154 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
154 155 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
155 156 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
156 157 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
157 158 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
158 159 1.135315 TCGACAAGTATTTCCGGACGG 60.135 52.381 1.83 3.96 0.00 4.79
159 160 2.267188 TCGACAAGTATTTCCGGACG 57.733 50.000 1.83 0.27 0.00 4.79
160 161 4.996062 TTTTCGACAAGTATTTCCGGAC 57.004 40.909 1.83 0.00 0.00 4.79
213 214 8.651389 CCGGGAATGGATGTATGTAGATATATT 58.349 37.037 0.00 0.00 0.00 1.28
220 221 2.903784 TCCCGGGAATGGATGTATGTAG 59.096 50.000 24.50 0.00 0.00 2.74
223 224 1.419762 TGTCCCGGGAATGGATGTATG 59.580 52.381 28.84 0.00 33.65 2.39
226 227 0.255890 CTTGTCCCGGGAATGGATGT 59.744 55.000 28.84 0.00 33.65 3.06
230 231 2.729028 AATACTTGTCCCGGGAATGG 57.271 50.000 28.84 19.74 0.00 3.16
234 235 1.065998 CCGAAAATACTTGTCCCGGGA 60.066 52.381 22.63 22.63 32.64 5.14
235 236 1.065998 TCCGAAAATACTTGTCCCGGG 60.066 52.381 16.85 16.85 36.47 5.73
236 237 2.004733 GTCCGAAAATACTTGTCCCGG 58.995 52.381 0.00 0.00 37.08 5.73
237 238 1.657094 CGTCCGAAAATACTTGTCCCG 59.343 52.381 0.00 0.00 0.00 5.14
238 239 2.004733 CCGTCCGAAAATACTTGTCCC 58.995 52.381 0.00 0.00 0.00 4.46
239 240 2.928116 CTCCGTCCGAAAATACTTGTCC 59.072 50.000 0.00 0.00 0.00 4.02
241 242 3.508793 TCTCTCCGTCCGAAAATACTTGT 59.491 43.478 0.00 0.00 0.00 3.16
242 243 4.106029 TCTCTCCGTCCGAAAATACTTG 57.894 45.455 0.00 0.00 0.00 3.16
244 245 3.354467 ACTCTCTCCGTCCGAAAATACT 58.646 45.455 0.00 0.00 0.00 2.12
250 251 2.289882 TGAACTACTCTCTCCGTCCGAA 60.290 50.000 0.00 0.00 0.00 4.30
252 253 1.397692 GTGAACTACTCTCTCCGTCCG 59.602 57.143 0.00 0.00 0.00 4.79
253 254 2.434428 TGTGAACTACTCTCTCCGTCC 58.566 52.381 0.00 0.00 0.00 4.79
257 258 5.407407 TTGGATTGTGAACTACTCTCTCC 57.593 43.478 0.00 0.00 0.00 3.71
258 259 7.730364 TTTTTGGATTGTGAACTACTCTCTC 57.270 36.000 0.00 0.00 0.00 3.20
259 260 8.697507 AATTTTTGGATTGTGAACTACTCTCT 57.302 30.769 0.00 0.00 0.00 3.10
262 263 8.793592 ACCTAATTTTTGGATTGTGAACTACTC 58.206 33.333 0.00 0.00 0.00 2.59
267 268 9.758651 AGTTTACCTAATTTTTGGATTGTGAAC 57.241 29.630 0.00 0.00 0.00 3.18
293 481 5.696270 CCGAGATACTTAAGCATGCACAATA 59.304 40.000 21.98 5.83 0.00 1.90
301 489 3.871594 GCAACACCGAGATACTTAAGCAT 59.128 43.478 1.29 0.00 0.00 3.79
308 496 1.204146 ATGGGCAACACCGAGATACT 58.796 50.000 0.00 0.00 40.62 2.12
327 515 2.247699 ACCACATACACTCAGCCCTA 57.752 50.000 0.00 0.00 0.00 3.53
332 520 7.928167 ACAATCACATATACCACATACACTCAG 59.072 37.037 0.00 0.00 0.00 3.35
345 533 7.488187 ACAATCAGCTCACAATCACATATAC 57.512 36.000 0.00 0.00 0.00 1.47
348 536 7.553760 ACAATACAATCAGCTCACAATCACATA 59.446 33.333 0.00 0.00 0.00 2.29
413 1813 0.613777 GGAAGGTGTGGATTCCGTCT 59.386 55.000 0.00 0.00 35.95 4.18
467 1867 2.076100 TGGTTGCTTGCTTCGATACTG 58.924 47.619 0.00 0.00 0.00 2.74
641 2045 3.450578 CAACTGCAAGCTGTGAACAATT 58.549 40.909 5.34 0.00 37.60 2.32
845 2251 2.549282 CACCGAACCGCGACTTTG 59.451 61.111 8.23 1.87 44.57 2.77
910 2316 1.135257 CAAACAAAACGAGCACACCCA 60.135 47.619 0.00 0.00 0.00 4.51
913 2319 3.498082 AGAACAAACAAAACGAGCACAC 58.502 40.909 0.00 0.00 0.00 3.82
914 2320 3.438781 AGAGAACAAACAAAACGAGCACA 59.561 39.130 0.00 0.00 0.00 4.57
915 2321 4.016113 AGAGAACAAACAAAACGAGCAC 57.984 40.909 0.00 0.00 0.00 4.40
916 2322 4.411327 CAAGAGAACAAACAAAACGAGCA 58.589 39.130 0.00 0.00 0.00 4.26
917 2323 3.240631 GCAAGAGAACAAACAAAACGAGC 59.759 43.478 0.00 0.00 0.00 5.03
918 2324 3.478516 CGCAAGAGAACAAACAAAACGAG 59.521 43.478 0.00 0.00 43.02 4.18
920 2326 2.035756 GCGCAAGAGAACAAACAAAACG 60.036 45.455 0.30 0.00 43.02 3.60
961 2367 2.972505 CACCACACGGCCACACTC 60.973 66.667 2.24 0.00 34.57 3.51
962 2368 2.830186 AAACACCACACGGCCACACT 62.830 55.000 2.24 0.00 34.57 3.55
968 2375 1.950973 AACCCAAAACACCACACGGC 61.951 55.000 0.00 0.00 34.57 5.68
976 2383 2.316108 AGATCACCCAACCCAAAACAC 58.684 47.619 0.00 0.00 0.00 3.32
1098 2505 0.180406 GCCCAATCCCGAGCTTCTTA 59.820 55.000 0.00 0.00 0.00 2.10
1201 2608 3.703001 TGAAGAACTGGATTGGAGGTC 57.297 47.619 0.00 0.00 0.00 3.85
1208 2615 3.686726 GCGTGAAGATGAAGAACTGGATT 59.313 43.478 0.00 0.00 0.00 3.01
1221 2628 0.687354 AGTGGTTCCTGCGTGAAGAT 59.313 50.000 0.00 0.00 0.00 2.40
1353 2760 3.161450 GGCACGGCCTCCTCCATA 61.161 66.667 0.00 0.00 46.69 2.74
1421 2828 2.815647 GCTCTTTCGGCTCCGTGG 60.816 66.667 8.28 0.69 40.74 4.94
1484 2891 0.889186 GCTTTTTGTCTCCGCTGGGA 60.889 55.000 0.00 0.00 41.08 4.37
1524 2931 0.038526 ACTCACCTGGCTTCGTTACG 60.039 55.000 0.00 0.00 0.00 3.18
1530 2937 2.554462 GGAAAAGAACTCACCTGGCTTC 59.446 50.000 0.00 0.00 0.00 3.86
1601 3008 9.368674 CATCATCTACTAAAGGCAAGATCTATG 57.631 37.037 0.00 0.00 0.00 2.23
1602 3009 9.319060 TCATCATCTACTAAAGGCAAGATCTAT 57.681 33.333 0.00 0.00 0.00 1.98
1603 3010 8.712228 TCATCATCTACTAAAGGCAAGATCTA 57.288 34.615 0.00 0.00 0.00 1.98
1618 3026 6.060788 AGCTCTTTGGGAAATCATCATCTAC 58.939 40.000 0.00 0.00 0.00 2.59
1647 3064 5.732331 ACATCATGGAAGAGGGGATTAAA 57.268 39.130 0.00 0.00 0.00 1.52
1701 3129 8.934825 CAGAGTTAAGACTAAGTACGAAGTAGT 58.065 37.037 3.50 2.96 41.88 2.73
1702 3130 9.149225 TCAGAGTTAAGACTAAGTACGAAGTAG 57.851 37.037 3.50 0.08 39.22 2.57
1717 3145 9.654663 GGATTAAAGCTAAGTTCAGAGTTAAGA 57.345 33.333 0.00 0.00 0.00 2.10
1718 3146 8.884726 GGGATTAAAGCTAAGTTCAGAGTTAAG 58.115 37.037 0.00 0.00 0.00 1.85
1719 3147 7.827729 GGGGATTAAAGCTAAGTTCAGAGTTAA 59.172 37.037 0.00 0.00 0.00 2.01
1720 3148 7.182206 AGGGGATTAAAGCTAAGTTCAGAGTTA 59.818 37.037 0.00 0.00 0.00 2.24
1721 3149 6.012421 AGGGGATTAAAGCTAAGTTCAGAGTT 60.012 38.462 0.00 0.00 0.00 3.01
1722 3150 5.489278 AGGGGATTAAAGCTAAGTTCAGAGT 59.511 40.000 0.00 0.00 0.00 3.24
1723 3151 5.995446 AGGGGATTAAAGCTAAGTTCAGAG 58.005 41.667 0.00 0.00 0.00 3.35
1802 3238 7.279981 TGACCAAAATACGGATCATAAGTTCAG 59.720 37.037 0.00 0.00 0.00 3.02
1831 3267 1.208535 TCCGTTTTATCGCCACCATCT 59.791 47.619 0.00 0.00 0.00 2.90
1832 3268 1.658994 TCCGTTTTATCGCCACCATC 58.341 50.000 0.00 0.00 0.00 3.51
1833 3269 2.014128 CTTCCGTTTTATCGCCACCAT 58.986 47.619 0.00 0.00 0.00 3.55
1849 3285 1.680314 CTTGGCCTTGGCCTCTTCC 60.680 63.158 28.37 4.47 0.00 3.46
1918 3354 2.807045 GTGAGCTCGCACACGGAG 60.807 66.667 22.25 0.00 40.63 4.63
2005 3441 1.080025 CTTCTCCCCGTTGTCGTCC 60.080 63.158 0.00 0.00 35.01 4.79
2341 3777 0.907230 AGTGCACCTCCTCCTCCTTC 60.907 60.000 14.63 0.00 0.00 3.46
2794 4230 4.716003 GGCTGGCCGTAGAAGTTT 57.284 55.556 0.00 0.00 0.00 2.66
2950 4386 1.410517 TCCTGCTTCATGACGATCTCC 59.589 52.381 2.89 0.00 0.00 3.71
3036 4472 5.585047 ACCCAGACAAACGCTCTAATTAATC 59.415 40.000 0.00 0.00 0.00 1.75
3037 4473 5.497474 ACCCAGACAAACGCTCTAATTAAT 58.503 37.500 0.00 0.00 0.00 1.40
3038 4474 4.901868 ACCCAGACAAACGCTCTAATTAA 58.098 39.130 0.00 0.00 0.00 1.40
3039 4475 4.546829 ACCCAGACAAACGCTCTAATTA 57.453 40.909 0.00 0.00 0.00 1.40
3071 4507 4.218635 TCGATCATCAGCTATACTCCAACC 59.781 45.833 0.00 0.00 0.00 3.77
3077 4551 6.641169 TGAAACTCGATCATCAGCTATACT 57.359 37.500 0.00 0.00 0.00 2.12
3092 4572 7.406553 TGACTGAACTTACAAAATGAAACTCG 58.593 34.615 0.00 0.00 0.00 4.18
3151 4897 5.403246 CAGCAATGTAGTAACTCGTCTTCT 58.597 41.667 0.00 0.00 0.00 2.85
3152 4898 4.563184 CCAGCAATGTAGTAACTCGTCTTC 59.437 45.833 0.00 0.00 0.00 2.87
3153 4899 4.495422 CCAGCAATGTAGTAACTCGTCTT 58.505 43.478 0.00 0.00 0.00 3.01
3155 4901 2.603560 GCCAGCAATGTAGTAACTCGTC 59.396 50.000 0.00 0.00 0.00 4.20
3156 4902 2.618053 GCCAGCAATGTAGTAACTCGT 58.382 47.619 0.00 0.00 0.00 4.18
3157 4903 1.933853 GGCCAGCAATGTAGTAACTCG 59.066 52.381 0.00 0.00 0.00 4.18
3163 4909 0.393537 GCTCTGGCCAGCAATGTAGT 60.394 55.000 28.91 0.00 39.43 2.73
3164 4910 0.393402 TGCTCTGGCCAGCAATGTAG 60.393 55.000 28.91 19.32 46.65 2.74
3165 4911 1.684629 TGCTCTGGCCAGCAATGTA 59.315 52.632 28.91 13.80 46.65 2.29
3166 4912 2.437449 TGCTCTGGCCAGCAATGT 59.563 55.556 28.91 0.00 46.65 2.71
3175 4921 2.093764 ACTACATCTTGAGTGCTCTGGC 60.094 50.000 0.00 0.00 39.26 4.85
3193 4939 8.843885 ATATATGCTCTTCAGTACACGTACTA 57.156 34.615 9.45 0.00 43.98 1.82
3195 4941 8.501580 TGTATATATGCTCTTCAGTACACGTAC 58.498 37.037 2.37 0.00 36.35 3.67
3196 4942 8.611654 TGTATATATGCTCTTCAGTACACGTA 57.388 34.615 2.37 0.00 0.00 3.57
3197 4943 7.506328 TGTATATATGCTCTTCAGTACACGT 57.494 36.000 2.37 0.00 0.00 4.49
3198 4944 9.491934 GTATGTATATATGCTCTTCAGTACACG 57.508 37.037 2.37 0.00 0.00 4.49
3199 4945 9.491934 CGTATGTATATATGCTCTTCAGTACAC 57.508 37.037 2.37 0.00 0.00 2.90
3200 4946 8.674607 CCGTATGTATATATGCTCTTCAGTACA 58.325 37.037 2.37 0.00 0.00 2.90
3201 4947 8.890718 TCCGTATGTATATATGCTCTTCAGTAC 58.109 37.037 2.37 0.00 0.00 2.73
3202 4948 9.628500 ATCCGTATGTATATATGCTCTTCAGTA 57.372 33.333 2.37 0.00 0.00 2.74
3203 4949 7.939784 TCCGTATGTATATATGCTCTTCAGT 57.060 36.000 2.37 0.00 0.00 3.41
3204 4950 8.624776 TCATCCGTATGTATATATGCTCTTCAG 58.375 37.037 2.37 0.00 34.50 3.02
3205 4951 8.519799 TCATCCGTATGTATATATGCTCTTCA 57.480 34.615 2.37 0.00 34.50 3.02
3206 4952 9.803315 TTTCATCCGTATGTATATATGCTCTTC 57.197 33.333 2.37 0.00 34.50 2.87
3207 4953 9.587772 GTTTCATCCGTATGTATATATGCTCTT 57.412 33.333 2.37 0.00 34.50 2.85
3208 4954 8.972127 AGTTTCATCCGTATGTATATATGCTCT 58.028 33.333 2.37 0.00 34.50 4.09
3209 4955 9.025020 CAGTTTCATCCGTATGTATATATGCTC 57.975 37.037 2.37 0.00 34.50 4.26
3210 4956 8.531982 ACAGTTTCATCCGTATGTATATATGCT 58.468 33.333 2.37 0.00 34.50 3.79
3211 4957 8.703604 ACAGTTTCATCCGTATGTATATATGC 57.296 34.615 0.00 0.00 34.50 3.14
3212 4958 9.010366 CGACAGTTTCATCCGTATGTATATATG 57.990 37.037 0.00 0.00 34.50 1.78
3213 4959 7.701078 GCGACAGTTTCATCCGTATGTATATAT 59.299 37.037 0.00 0.00 34.50 0.86
3214 4960 7.025365 GCGACAGTTTCATCCGTATGTATATA 58.975 38.462 0.00 0.00 34.50 0.86
3225 4971 3.251004 AGACAAAAGCGACAGTTTCATCC 59.749 43.478 0.00 0.00 0.00 3.51
3229 4975 3.555956 TCAGAGACAAAAGCGACAGTTTC 59.444 43.478 0.00 0.00 0.00 2.78
3247 4993 9.013229 ACAATTGCAATACTTTACTCATTCAGA 57.987 29.630 13.39 0.00 0.00 3.27
3264 5020 3.888323 TGACAAGGCTAAGACAATTGCAA 59.112 39.130 5.05 0.00 0.00 4.08
3265 5021 3.253188 GTGACAAGGCTAAGACAATTGCA 59.747 43.478 5.05 0.00 0.00 4.08
3266 5022 3.667960 CGTGACAAGGCTAAGACAATTGC 60.668 47.826 5.05 0.00 0.00 3.56
3267 5023 3.667960 GCGTGACAAGGCTAAGACAATTG 60.668 47.826 3.24 3.24 34.31 2.32
3268 5024 2.484264 GCGTGACAAGGCTAAGACAATT 59.516 45.455 0.00 0.00 34.31 2.32
3290 5054 7.043391 TCGACTAAATATTGCAGTCTTTGATCG 60.043 37.037 20.17 15.16 37.20 3.69
3308 5072 2.033675 TCGCTGTCAACACTCGACTAAA 59.966 45.455 0.00 0.00 34.37 1.85
3311 5075 0.039978 CTCGCTGTCAACACTCGACT 60.040 55.000 0.00 0.00 34.37 4.18
3312 5076 1.609840 GCTCGCTGTCAACACTCGAC 61.610 60.000 0.00 0.00 0.00 4.20
3315 5079 2.148687 CAGCTCGCTGTCAACACTC 58.851 57.895 10.65 0.00 39.10 3.51
3316 5080 4.350620 CAGCTCGCTGTCAACACT 57.649 55.556 10.65 0.00 39.10 3.55
3341 5105 0.509929 GTGCTTGGTCCGAAACGTAC 59.490 55.000 0.00 0.00 0.00 3.67
3342 5106 0.940519 CGTGCTTGGTCCGAAACGTA 60.941 55.000 0.00 0.00 0.00 3.57
3344 5108 1.768112 AACGTGCTTGGTCCGAAACG 61.768 55.000 10.99 10.99 37.09 3.60
3346 5110 1.096416 AAAACGTGCTTGGTCCGAAA 58.904 45.000 0.00 0.00 0.00 3.46
3349 5113 4.607024 CAAAACGTGCTTGGTCCG 57.393 55.556 0.00 0.00 0.00 4.79
3423 5213 2.919666 TCCAGCTGCTTTTTATTCGC 57.080 45.000 8.66 0.00 0.00 4.70
3426 5216 9.807649 CAACTTTATATCCAGCTGCTTTTTATT 57.192 29.630 8.66 0.00 0.00 1.40
3427 5217 8.971073 ACAACTTTATATCCAGCTGCTTTTTAT 58.029 29.630 8.66 3.14 0.00 1.40
3460 5259 4.987408 TCCGTTGATTGATTGATGCATT 57.013 36.364 0.00 0.00 0.00 3.56
3474 5273 1.665169 CGATGTGCAATCATCCGTTGA 59.335 47.619 10.73 0.00 40.50 3.18
3475 5274 1.398041 ACGATGTGCAATCATCCGTTG 59.602 47.619 10.73 1.48 40.50 4.10
3476 5275 1.737838 ACGATGTGCAATCATCCGTT 58.262 45.000 10.73 0.00 40.50 4.44
3477 5276 1.398041 CAACGATGTGCAATCATCCGT 59.602 47.619 10.73 9.28 40.50 4.69
3492 5291 4.020573 ACCATTTCCTCACTGTATCAACGA 60.021 41.667 0.00 0.00 0.00 3.85
3493 5292 4.093408 CACCATTTCCTCACTGTATCAACG 59.907 45.833 0.00 0.00 0.00 4.10
3500 5299 2.806745 CGTGTCACCATTTCCTCACTGT 60.807 50.000 0.00 0.00 0.00 3.55
3529 5328 7.008021 AGAGAATGTGCCCAAATAATGTTTT 57.992 32.000 0.00 0.00 0.00 2.43
3540 5339 0.321564 CCGTCAAGAGAATGTGCCCA 60.322 55.000 0.00 0.00 0.00 5.36
3541 5340 1.648467 GCCGTCAAGAGAATGTGCCC 61.648 60.000 0.00 0.00 0.00 5.36
3542 5341 0.955428 TGCCGTCAAGAGAATGTGCC 60.955 55.000 0.00 0.00 0.00 5.01
3543 5342 0.874390 TTGCCGTCAAGAGAATGTGC 59.126 50.000 0.00 0.00 0.00 4.57
3544 5343 2.095567 CCTTTGCCGTCAAGAGAATGTG 60.096 50.000 0.00 0.00 33.12 3.21
3545 5344 2.154462 CCTTTGCCGTCAAGAGAATGT 58.846 47.619 0.00 0.00 33.12 2.71
3546 5345 1.135575 GCCTTTGCCGTCAAGAGAATG 60.136 52.381 0.00 0.00 33.12 2.67
3547 5346 1.168714 GCCTTTGCCGTCAAGAGAAT 58.831 50.000 0.00 0.00 33.12 2.40
3548 5347 0.108585 AGCCTTTGCCGTCAAGAGAA 59.891 50.000 0.00 0.00 38.69 2.87
3549 5348 0.108585 AAGCCTTTGCCGTCAAGAGA 59.891 50.000 0.00 0.00 38.69 3.10
3550 5349 0.239347 CAAGCCTTTGCCGTCAAGAG 59.761 55.000 0.00 0.00 38.69 2.85
3551 5350 0.179032 TCAAGCCTTTGCCGTCAAGA 60.179 50.000 0.00 0.00 38.69 3.02
3552 5351 0.667993 TTCAAGCCTTTGCCGTCAAG 59.332 50.000 0.00 0.00 38.69 3.02
3553 5352 0.667993 CTTCAAGCCTTTGCCGTCAA 59.332 50.000 0.00 0.00 38.69 3.18
3554 5353 0.179032 TCTTCAAGCCTTTGCCGTCA 60.179 50.000 0.00 0.00 38.69 4.35
3555 5354 1.131315 GATCTTCAAGCCTTTGCCGTC 59.869 52.381 0.00 0.00 38.69 4.79
3556 5355 1.168714 GATCTTCAAGCCTTTGCCGT 58.831 50.000 0.00 0.00 38.69 5.68
3557 5356 1.135575 GTGATCTTCAAGCCTTTGCCG 60.136 52.381 0.00 0.00 38.69 5.69
3558 5357 1.135575 CGTGATCTTCAAGCCTTTGCC 60.136 52.381 0.00 0.00 38.69 4.52
3559 5358 1.135575 CCGTGATCTTCAAGCCTTTGC 60.136 52.381 0.00 0.00 34.21 3.68
3560 5359 1.135575 GCCGTGATCTTCAAGCCTTTG 60.136 52.381 0.00 0.00 35.57 2.77
3561 5360 1.168714 GCCGTGATCTTCAAGCCTTT 58.831 50.000 0.00 0.00 0.00 3.11
3562 5361 0.326264 AGCCGTGATCTTCAAGCCTT 59.674 50.000 0.00 0.00 30.64 4.35
3563 5362 0.326264 AAGCCGTGATCTTCAAGCCT 59.674 50.000 0.00 0.00 30.64 4.58
3564 5363 0.729690 GAAGCCGTGATCTTCAAGCC 59.270 55.000 0.00 0.00 39.64 4.35
3565 5364 1.731720 AGAAGCCGTGATCTTCAAGC 58.268 50.000 5.67 0.00 41.68 4.01
3566 5365 3.999663 AGAAAGAAGCCGTGATCTTCAAG 59.000 43.478 5.67 0.00 41.68 3.02
3567 5366 4.008074 AGAAAGAAGCCGTGATCTTCAA 57.992 40.909 5.67 0.00 41.68 2.69
3568 5367 3.685139 AGAAAGAAGCCGTGATCTTCA 57.315 42.857 5.67 0.00 41.68 3.02
3569 5368 3.061429 CGAAGAAAGAAGCCGTGATCTTC 59.939 47.826 8.38 8.38 39.41 2.87
3570 5369 2.996621 CGAAGAAAGAAGCCGTGATCTT 59.003 45.455 0.00 0.00 37.49 2.40
3571 5370 2.611518 CGAAGAAAGAAGCCGTGATCT 58.388 47.619 0.00 0.00 0.00 2.75
3572 5371 1.661112 CCGAAGAAAGAAGCCGTGATC 59.339 52.381 0.00 0.00 0.00 2.92
3573 5372 1.676014 CCCGAAGAAAGAAGCCGTGAT 60.676 52.381 0.00 0.00 0.00 3.06
3574 5373 0.320421 CCCGAAGAAAGAAGCCGTGA 60.320 55.000 0.00 0.00 0.00 4.35
3575 5374 1.298859 CCCCGAAGAAAGAAGCCGTG 61.299 60.000 0.00 0.00 0.00 4.94
3576 5375 1.003718 CCCCGAAGAAAGAAGCCGT 60.004 57.895 0.00 0.00 0.00 5.68
3577 5376 1.003718 ACCCCGAAGAAAGAAGCCG 60.004 57.895 0.00 0.00 0.00 5.52
3578 5377 1.587043 GCACCCCGAAGAAAGAAGCC 61.587 60.000 0.00 0.00 0.00 4.35
3579 5378 0.889186 TGCACCCCGAAGAAAGAAGC 60.889 55.000 0.00 0.00 0.00 3.86
3580 5379 0.875059 GTGCACCCCGAAGAAAGAAG 59.125 55.000 5.22 0.00 0.00 2.85
3581 5380 0.882927 CGTGCACCCCGAAGAAAGAA 60.883 55.000 12.15 0.00 0.00 2.52
3582 5381 1.301401 CGTGCACCCCGAAGAAAGA 60.301 57.895 12.15 0.00 0.00 2.52
3583 5382 1.566018 GACGTGCACCCCGAAGAAAG 61.566 60.000 12.15 0.00 0.00 2.62
3584 5383 1.595929 GACGTGCACCCCGAAGAAA 60.596 57.895 12.15 0.00 0.00 2.52
3585 5384 2.029964 GACGTGCACCCCGAAGAA 59.970 61.111 12.15 0.00 0.00 2.52
3586 5385 2.798364 TTGACGTGCACCCCGAAGA 61.798 57.895 12.15 0.00 0.00 2.87
3587 5386 2.280524 TTGACGTGCACCCCGAAG 60.281 61.111 12.15 0.00 0.00 3.79
3588 5387 2.589442 GTTGACGTGCACCCCGAA 60.589 61.111 12.15 0.00 0.00 4.30
3589 5388 2.871216 TTTGTTGACGTGCACCCCGA 62.871 55.000 12.15 0.00 0.00 5.14
3590 5389 2.387125 CTTTGTTGACGTGCACCCCG 62.387 60.000 12.15 1.82 0.00 5.73
3591 5390 1.358759 CTTTGTTGACGTGCACCCC 59.641 57.895 12.15 3.57 0.00 4.95
3592 5391 1.098712 TCCTTTGTTGACGTGCACCC 61.099 55.000 12.15 3.97 0.00 4.61
3593 5392 0.736053 TTCCTTTGTTGACGTGCACC 59.264 50.000 12.15 0.00 0.00 5.01
3594 5393 1.400494 ACTTCCTTTGTTGACGTGCAC 59.600 47.619 6.82 6.82 0.00 4.57
3595 5394 1.745232 ACTTCCTTTGTTGACGTGCA 58.255 45.000 0.00 0.00 0.00 4.57
3596 5395 2.096819 TCAACTTCCTTTGTTGACGTGC 59.903 45.455 0.00 0.00 45.77 5.34
3602 5401 3.023832 ACCCTGTCAACTTCCTTTGTTG 58.976 45.455 0.00 0.00 44.21 3.33
3603 5402 3.053619 AGACCCTGTCAACTTCCTTTGTT 60.054 43.478 0.00 0.00 34.60 2.83
3604 5403 2.509964 AGACCCTGTCAACTTCCTTTGT 59.490 45.455 0.00 0.00 34.60 2.83
3605 5404 3.142174 GAGACCCTGTCAACTTCCTTTG 58.858 50.000 0.00 0.00 34.60 2.77
3606 5405 2.777692 TGAGACCCTGTCAACTTCCTTT 59.222 45.455 0.00 0.00 34.60 3.11
3607 5406 2.370189 CTGAGACCCTGTCAACTTCCTT 59.630 50.000 0.00 0.00 34.60 3.36
3608 5407 1.974236 CTGAGACCCTGTCAACTTCCT 59.026 52.381 0.00 0.00 34.60 3.36
3609 5408 1.002544 CCTGAGACCCTGTCAACTTCC 59.997 57.143 0.00 0.00 34.60 3.46
3610 5409 1.971357 TCCTGAGACCCTGTCAACTTC 59.029 52.381 0.00 0.00 34.60 3.01
3611 5410 2.103153 TCCTGAGACCCTGTCAACTT 57.897 50.000 0.00 0.00 34.60 2.66
3612 5411 2.103153 TTCCTGAGACCCTGTCAACT 57.897 50.000 0.00 0.00 34.60 3.16
3613 5412 2.551071 CCTTTCCTGAGACCCTGTCAAC 60.551 54.545 0.00 0.00 34.60 3.18
3614 5413 1.699634 CCTTTCCTGAGACCCTGTCAA 59.300 52.381 0.00 0.00 34.60 3.18
3615 5414 1.352083 CCTTTCCTGAGACCCTGTCA 58.648 55.000 0.00 0.00 34.60 3.58
3616 5415 0.615850 CCCTTTCCTGAGACCCTGTC 59.384 60.000 0.00 0.00 0.00 3.51
3617 5416 0.193574 TCCCTTTCCTGAGACCCTGT 59.806 55.000 0.00 0.00 0.00 4.00
3618 5417 0.908198 CTCCCTTTCCTGAGACCCTG 59.092 60.000 0.00 0.00 0.00 4.45
3619 5418 0.252927 CCTCCCTTTCCTGAGACCCT 60.253 60.000 0.00 0.00 0.00 4.34
3620 5419 1.275421 CCCTCCCTTTCCTGAGACCC 61.275 65.000 0.00 0.00 0.00 4.46
3621 5420 0.252742 TCCCTCCCTTTCCTGAGACC 60.253 60.000 0.00 0.00 0.00 3.85
3622 5421 1.199615 CTCCCTCCCTTTCCTGAGAC 58.800 60.000 0.00 0.00 0.00 3.36
3623 5422 0.618968 GCTCCCTCCCTTTCCTGAGA 60.619 60.000 0.00 0.00 0.00 3.27
3624 5423 0.911525 TGCTCCCTCCCTTTCCTGAG 60.912 60.000 0.00 0.00 0.00 3.35
3625 5424 1.160870 TGCTCCCTCCCTTTCCTGA 59.839 57.895 0.00 0.00 0.00 3.86
3626 5425 1.301293 GTGCTCCCTCCCTTTCCTG 59.699 63.158 0.00 0.00 0.00 3.86
3627 5426 2.294078 CGTGCTCCCTCCCTTTCCT 61.294 63.158 0.00 0.00 0.00 3.36
3628 5427 1.262640 TACGTGCTCCCTCCCTTTCC 61.263 60.000 0.00 0.00 0.00 3.13
3629 5428 0.831307 ATACGTGCTCCCTCCCTTTC 59.169 55.000 0.00 0.00 0.00 2.62
3630 5429 0.831307 GATACGTGCTCCCTCCCTTT 59.169 55.000 0.00 0.00 0.00 3.11
3631 5430 1.049289 GGATACGTGCTCCCTCCCTT 61.049 60.000 0.00 0.00 0.00 3.95
3632 5431 1.457831 GGATACGTGCTCCCTCCCT 60.458 63.158 0.00 0.00 0.00 4.20
3633 5432 1.335132 TTGGATACGTGCTCCCTCCC 61.335 60.000 14.35 0.00 42.51 4.30
3634 5433 0.759346 ATTGGATACGTGCTCCCTCC 59.241 55.000 14.35 4.85 42.51 4.30
3635 5434 1.412710 TCATTGGATACGTGCTCCCTC 59.587 52.381 14.35 0.00 42.51 4.30
3636 5435 1.496060 TCATTGGATACGTGCTCCCT 58.504 50.000 14.35 2.16 42.51 4.20
3637 5436 2.550830 ATCATTGGATACGTGCTCCC 57.449 50.000 14.35 4.00 42.51 4.30
3638 5437 7.849804 ATAATAATCATTGGATACGTGCTCC 57.150 36.000 11.07 11.07 42.51 4.70
3661 5460 9.011095 TGCGTAAGACTTATAGCAAGACTATAT 57.989 33.333 19.45 0.00 40.85 0.86
3662 5461 8.387190 TGCGTAAGACTTATAGCAAGACTATA 57.613 34.615 19.45 0.00 40.53 1.31
3663 5462 7.273320 TGCGTAAGACTTATAGCAAGACTAT 57.727 36.000 19.45 0.00 42.18 2.12
3664 5463 6.688637 TGCGTAAGACTTATAGCAAGACTA 57.311 37.500 19.45 2.96 43.02 2.59
3665 5464 5.578005 TGCGTAAGACTTATAGCAAGACT 57.422 39.130 19.45 0.00 43.02 3.24
3666 5465 5.805994 AGTTGCGTAAGACTTATAGCAAGAC 59.194 40.000 27.00 21.03 40.01 3.01
3667 5466 5.805486 CAGTTGCGTAAGACTTATAGCAAGA 59.195 40.000 27.00 14.21 40.01 3.02
3668 5467 5.805486 TCAGTTGCGTAAGACTTATAGCAAG 59.195 40.000 27.00 20.47 40.01 4.01
3669 5468 5.716094 TCAGTTGCGTAAGACTTATAGCAA 58.284 37.500 24.64 24.64 38.41 3.91
3670 5469 5.124936 TCTCAGTTGCGTAAGACTTATAGCA 59.875 40.000 18.43 18.43 43.02 3.49
3671 5470 5.456173 GTCTCAGTTGCGTAAGACTTATAGC 59.544 44.000 14.84 14.84 43.02 2.97
3672 5471 6.787225 AGTCTCAGTTGCGTAAGACTTATAG 58.213 40.000 0.00 0.00 44.57 1.31
3673 5472 6.754702 AGTCTCAGTTGCGTAAGACTTATA 57.245 37.500 0.00 0.00 44.57 0.98
3674 5473 5.646577 AGTCTCAGTTGCGTAAGACTTAT 57.353 39.130 0.00 0.00 44.57 1.73
3678 5477 2.731976 CCAAGTCTCAGTTGCGTAAGAC 59.268 50.000 0.00 0.00 43.02 3.01
3679 5478 2.364324 ACCAAGTCTCAGTTGCGTAAGA 59.636 45.455 0.00 0.00 43.02 2.10
3680 5479 2.755650 ACCAAGTCTCAGTTGCGTAAG 58.244 47.619 0.00 0.00 43.44 2.34
3681 5480 2.902705 ACCAAGTCTCAGTTGCGTAA 57.097 45.000 0.00 0.00 0.00 3.18
3682 5481 2.902705 AACCAAGTCTCAGTTGCGTA 57.097 45.000 0.00 0.00 0.00 4.42
3683 5482 2.902705 TAACCAAGTCTCAGTTGCGT 57.097 45.000 0.00 0.00 0.00 5.24
3684 5483 2.480419 CCTTAACCAAGTCTCAGTTGCG 59.520 50.000 0.00 0.00 0.00 4.85
3685 5484 2.226674 GCCTTAACCAAGTCTCAGTTGC 59.773 50.000 0.00 0.00 0.00 4.17
3686 5485 3.499918 CAGCCTTAACCAAGTCTCAGTTG 59.500 47.826 0.00 0.00 0.00 3.16
3687 5486 3.391296 TCAGCCTTAACCAAGTCTCAGTT 59.609 43.478 0.00 0.00 0.00 3.16
3688 5487 2.972713 TCAGCCTTAACCAAGTCTCAGT 59.027 45.455 0.00 0.00 0.00 3.41
3689 5488 3.594134 CTCAGCCTTAACCAAGTCTCAG 58.406 50.000 0.00 0.00 0.00 3.35
3690 5489 2.303022 CCTCAGCCTTAACCAAGTCTCA 59.697 50.000 0.00 0.00 0.00 3.27
3691 5490 2.303311 ACCTCAGCCTTAACCAAGTCTC 59.697 50.000 0.00 0.00 0.00 3.36
3692 5491 2.339769 ACCTCAGCCTTAACCAAGTCT 58.660 47.619 0.00 0.00 0.00 3.24
3693 5492 2.861147 ACCTCAGCCTTAACCAAGTC 57.139 50.000 0.00 0.00 0.00 3.01
3694 5493 4.929146 AATACCTCAGCCTTAACCAAGT 57.071 40.909 0.00 0.00 0.00 3.16
3695 5494 5.741011 TGTAATACCTCAGCCTTAACCAAG 58.259 41.667 0.00 0.00 0.00 3.61
3696 5495 5.765576 TGTAATACCTCAGCCTTAACCAA 57.234 39.130 0.00 0.00 0.00 3.67
3697 5496 5.968676 ATGTAATACCTCAGCCTTAACCA 57.031 39.130 0.00 0.00 0.00 3.67
3698 5497 6.354130 TCAATGTAATACCTCAGCCTTAACC 58.646 40.000 0.00 0.00 0.00 2.85
3699 5498 7.272978 TCTCAATGTAATACCTCAGCCTTAAC 58.727 38.462 0.00 0.00 0.00 2.01
3700 5499 7.432148 TCTCAATGTAATACCTCAGCCTTAA 57.568 36.000 0.00 0.00 0.00 1.85
3701 5500 7.618019 ATCTCAATGTAATACCTCAGCCTTA 57.382 36.000 0.00 0.00 0.00 2.69
3702 5501 5.957771 TCTCAATGTAATACCTCAGCCTT 57.042 39.130 0.00 0.00 0.00 4.35
3703 5502 6.100279 TGAATCTCAATGTAATACCTCAGCCT 59.900 38.462 0.00 0.00 0.00 4.58
3704 5503 6.291377 TGAATCTCAATGTAATACCTCAGCC 58.709 40.000 0.00 0.00 0.00 4.85
3705 5504 7.572724 GCATGAATCTCAATGTAATACCTCAGC 60.573 40.741 0.00 0.00 0.00 4.26
3706 5505 7.443272 TGCATGAATCTCAATGTAATACCTCAG 59.557 37.037 0.00 0.00 0.00 3.35
3707 5506 7.281841 TGCATGAATCTCAATGTAATACCTCA 58.718 34.615 0.00 0.00 0.00 3.86
3708 5507 7.734924 TGCATGAATCTCAATGTAATACCTC 57.265 36.000 0.00 0.00 0.00 3.85
3709 5508 8.523915 TTTGCATGAATCTCAATGTAATACCT 57.476 30.769 0.00 0.00 0.00 3.08
3710 5509 9.754382 ATTTTGCATGAATCTCAATGTAATACC 57.246 29.630 0.00 0.00 0.00 2.73
3757 5556 9.891828 GTCAAATGACATAACATACAAAAGTGA 57.108 29.630 8.63 0.00 44.18 3.41
3774 5573 7.440523 AACCAAATCTCAGTAGTCAAATGAC 57.559 36.000 5.40 5.40 45.08 3.06
3775 5574 9.567776 TTTAACCAAATCTCAGTAGTCAAATGA 57.432 29.630 0.00 0.00 0.00 2.57
3790 5589 6.766084 CAGTCGACTGAGATTTAACCAAATC 58.234 40.000 36.73 2.56 46.59 2.17
3791 5590 6.727824 CAGTCGACTGAGATTTAACCAAAT 57.272 37.500 36.73 0.00 46.59 2.32
3805 5604 1.813178 TGGCTAAGTCTCAGTCGACTG 59.187 52.381 34.76 34.76 43.14 3.51
3806 5605 1.813786 GTGGCTAAGTCTCAGTCGACT 59.186 52.381 13.58 13.58 45.73 4.18
3807 5606 1.540267 TGTGGCTAAGTCTCAGTCGAC 59.460 52.381 7.70 7.70 0.00 4.20
3808 5607 1.540267 GTGTGGCTAAGTCTCAGTCGA 59.460 52.381 0.00 0.00 0.00 4.20
3809 5608 1.402984 GGTGTGGCTAAGTCTCAGTCG 60.403 57.143 0.00 0.00 0.00 4.18
3810 5609 1.066787 GGGTGTGGCTAAGTCTCAGTC 60.067 57.143 0.00 0.00 0.00 3.51
3811 5610 0.977395 GGGTGTGGCTAAGTCTCAGT 59.023 55.000 0.00 0.00 0.00 3.41
3812 5611 1.270907 AGGGTGTGGCTAAGTCTCAG 58.729 55.000 0.00 0.00 0.00 3.35
3813 5612 1.729586 AAGGGTGTGGCTAAGTCTCA 58.270 50.000 0.00 0.00 0.00 3.27
3814 5613 2.427506 CAAAGGGTGTGGCTAAGTCTC 58.572 52.381 0.00 0.00 0.00 3.36
3815 5614 1.073923 CCAAAGGGTGTGGCTAAGTCT 59.926 52.381 0.00 0.00 0.00 3.24
3816 5615 1.534729 CCAAAGGGTGTGGCTAAGTC 58.465 55.000 0.00 0.00 0.00 3.01
3817 5616 3.745723 CCAAAGGGTGTGGCTAAGT 57.254 52.632 0.00 0.00 0.00 2.24
3825 5624 7.102076 GTCCAGGACATATACCAAAGGGTGT 62.102 48.000 15.43 0.00 39.16 4.16
3826 5625 4.686122 GTCCAGGACATATACCAAAGGGTG 60.686 50.000 15.43 0.00 39.16 4.61
3827 5626 3.458487 GTCCAGGACATATACCAAAGGGT 59.542 47.826 15.43 0.00 40.75 4.34
3828 5627 3.494398 CGTCCAGGACATATACCAAAGGG 60.494 52.174 20.13 0.00 34.58 3.95
3829 5628 3.134081 ACGTCCAGGACATATACCAAAGG 59.866 47.826 20.13 0.98 32.09 3.11
3830 5629 4.119862 CACGTCCAGGACATATACCAAAG 58.880 47.826 20.13 1.50 32.09 2.77
3831 5630 3.516300 ACACGTCCAGGACATATACCAAA 59.484 43.478 20.13 0.00 32.09 3.28
3832 5631 3.101437 ACACGTCCAGGACATATACCAA 58.899 45.455 20.13 0.00 32.09 3.67
3833 5632 2.691526 GACACGTCCAGGACATATACCA 59.308 50.000 20.13 0.00 32.09 3.25
3834 5633 2.957006 AGACACGTCCAGGACATATACC 59.043 50.000 20.13 3.34 32.09 2.73
3835 5634 3.795826 GCAGACACGTCCAGGACATATAC 60.796 52.174 20.13 6.55 32.09 1.47
3836 5635 2.361119 GCAGACACGTCCAGGACATATA 59.639 50.000 20.13 0.00 32.09 0.86
3837 5636 1.137086 GCAGACACGTCCAGGACATAT 59.863 52.381 20.13 3.23 32.09 1.78
3838 5637 0.530744 GCAGACACGTCCAGGACATA 59.469 55.000 20.13 0.00 32.09 2.29
3839 5638 1.293498 GCAGACACGTCCAGGACAT 59.707 57.895 20.13 0.03 32.09 3.06
3840 5639 2.734591 GCAGACACGTCCAGGACA 59.265 61.111 20.13 0.00 32.09 4.02
3841 5640 2.430921 CGCAGACACGTCCAGGAC 60.431 66.667 9.92 9.92 0.00 3.85
3842 5641 4.357947 GCGCAGACACGTCCAGGA 62.358 66.667 0.30 0.00 34.88 3.86
3843 5642 2.874010 CTAGCGCAGACACGTCCAGG 62.874 65.000 11.47 0.00 34.88 4.45
3844 5643 1.515088 CTAGCGCAGACACGTCCAG 60.515 63.158 11.47 0.00 34.88 3.86
3845 5644 2.566529 CTAGCGCAGACACGTCCA 59.433 61.111 11.47 0.00 34.88 4.02
3846 5645 2.881352 GCTAGCGCAGACACGTCC 60.881 66.667 11.47 0.00 35.78 4.79
3847 5646 3.241059 CGCTAGCGCAGACACGTC 61.241 66.667 26.07 0.00 35.30 4.34
3848 5647 2.191354 TAACGCTAGCGCAGACACGT 62.191 55.000 35.63 12.06 44.19 4.49
3849 5648 0.866061 ATAACGCTAGCGCAGACACG 60.866 55.000 35.63 8.77 44.19 4.49
3850 5649 2.115348 TATAACGCTAGCGCAGACAC 57.885 50.000 35.63 0.00 44.19 3.67
3851 5650 4.696899 ATATATAACGCTAGCGCAGACA 57.303 40.909 35.63 18.04 44.19 3.41
3852 5651 6.390987 AAAATATATAACGCTAGCGCAGAC 57.609 37.500 35.63 0.00 44.19 3.51
3853 5652 8.697846 AATAAAATATATAACGCTAGCGCAGA 57.302 30.769 35.63 21.66 44.19 4.26
3854 5653 8.056571 GGAATAAAATATATAACGCTAGCGCAG 58.943 37.037 35.63 11.93 44.19 5.18
3855 5654 7.546316 TGGAATAAAATATATAACGCTAGCGCA 59.454 33.333 35.63 24.27 44.19 6.09
3856 5655 7.902032 TGGAATAAAATATATAACGCTAGCGC 58.098 34.615 35.63 13.72 44.19 5.92
3884 5683 9.271828 CCATGCTAGTATGTTAAATGACATGTA 57.728 33.333 18.08 0.00 40.33 2.29
3885 5684 7.775093 ACCATGCTAGTATGTTAAATGACATGT 59.225 33.333 18.08 0.00 40.33 3.21
3886 5685 8.158169 ACCATGCTAGTATGTTAAATGACATG 57.842 34.615 18.08 5.79 40.33 3.21
3887 5686 8.752005 AACCATGCTAGTATGTTAAATGACAT 57.248 30.769 18.08 0.00 42.57 3.06
3888 5687 8.574251 AAACCATGCTAGTATGTTAAATGACA 57.426 30.769 18.08 0.00 0.00 3.58
3889 5688 9.855021 AAAAACCATGCTAGTATGTTAAATGAC 57.145 29.630 18.08 0.00 0.00 3.06
3969 5768 9.737427 GATCTGTCTCGAAAAGTATATTCTCAA 57.263 33.333 0.00 0.00 0.00 3.02
3970 5769 9.126151 AGATCTGTCTCGAAAAGTATATTCTCA 57.874 33.333 0.00 0.00 0.00 3.27
3979 5778 9.307121 CATATGTTTAGATCTGTCTCGAAAAGT 57.693 33.333 5.18 0.00 35.87 2.66
3980 5779 9.521503 TCATATGTTTAGATCTGTCTCGAAAAG 57.478 33.333 5.18 0.00 35.87 2.27
3989 5788 9.817809 ACGTGTAAATCATATGTTTAGATCTGT 57.182 29.630 5.18 4.50 0.00 3.41
3994 5793 9.863845 TGAGAACGTGTAAATCATATGTTTAGA 57.136 29.630 1.90 3.63 0.00 2.10
3997 5796 8.612619 GGATGAGAACGTGTAAATCATATGTTT 58.387 33.333 1.90 5.69 30.98 2.83
3998 5797 7.987458 AGGATGAGAACGTGTAAATCATATGTT 59.013 33.333 1.90 0.00 30.98 2.71
3999 5798 7.500992 AGGATGAGAACGTGTAAATCATATGT 58.499 34.615 1.90 0.00 30.98 2.29
4000 5799 7.953158 AGGATGAGAACGTGTAAATCATATG 57.047 36.000 0.00 0.00 30.98 1.78
4003 5802 8.964476 ATTTAGGATGAGAACGTGTAAATCAT 57.036 30.769 0.00 0.00 33.44 2.45
4008 5807 9.661563 ACAAATATTTAGGATGAGAACGTGTAA 57.338 29.630 0.00 0.00 0.00 2.41
4009 5808 9.309516 GACAAATATTTAGGATGAGAACGTGTA 57.690 33.333 0.00 0.00 0.00 2.90
4010 5809 7.822334 TGACAAATATTTAGGATGAGAACGTGT 59.178 33.333 0.00 0.00 0.00 4.49
4011 5810 8.116753 GTGACAAATATTTAGGATGAGAACGTG 58.883 37.037 0.00 0.00 0.00 4.49
4012 5811 8.197988 GTGACAAATATTTAGGATGAGAACGT 57.802 34.615 0.00 0.00 0.00 3.99


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.