Multiple sequence alignment - TraesCS7D01G234300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G234300 chr7D 100.000 3878 0 0 1 3878 196909463 196905586 0.000000e+00 7162.0
1 TraesCS7D01G234300 chr7D 90.826 109 8 2 27 133 293875566 293875458 1.120000e-30 145.0
2 TraesCS7D01G234300 chr7A 92.541 3231 143 36 30 3231 206006678 206003517 0.000000e+00 4542.0
3 TraesCS7D01G234300 chr7A 95.552 652 24 3 3230 3878 206003484 206002835 0.000000e+00 1038.0
4 TraesCS7D01G234300 chr7B 91.767 2490 87 43 784 3231 161198563 161196150 0.000000e+00 3354.0
5 TraesCS7D01G234300 chr7B 92.857 756 50 3 33 785 161200982 161200228 0.000000e+00 1094.0
6 TraesCS7D01G234300 chr7B 92.736 413 15 5 3230 3627 161196117 161195705 2.010000e-162 582.0
7 TraesCS7D01G234300 chr7B 94.144 222 11 2 3659 3878 161195710 161195489 1.730000e-88 337.0
8 TraesCS7D01G234300 chr7B 89.286 112 10 2 24 133 189911438 189911549 5.220000e-29 139.0
9 TraesCS7D01G234300 chr5A 88.496 113 11 2 23 133 304640922 304640810 6.760000e-28 135.0
10 TraesCS7D01G234300 chr6B 86.607 112 13 2 24 133 705135705 705135816 5.260000e-24 122.0
11 TraesCS7D01G234300 chr5B 87.156 109 12 2 27 133 263552541 263552649 5.260000e-24 122.0
12 TraesCS7D01G234300 chr5B 86.111 108 13 2 27 132 250439525 250439418 8.800000e-22 115.0
13 TraesCS7D01G234300 chr4A 86.364 110 11 4 27 133 142466620 142466512 2.450000e-22 117.0
14 TraesCS7D01G234300 chr6D 88.889 45 3 1 1123 1167 47997141 47997183 2.000000e-03 54.7
15 TraesCS7D01G234300 chr6A 100.000 29 0 0 1140 1168 401901356 401901384 2.000000e-03 54.7
16 TraesCS7D01G234300 chr3B 100.000 29 0 0 1141 1169 803751436 803751464 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G234300 chr7D 196905586 196909463 3877 True 7162.00 7162 100.0000 1 3878 1 chr7D.!!$R1 3877
1 TraesCS7D01G234300 chr7A 206002835 206006678 3843 True 2790.00 4542 94.0465 30 3878 2 chr7A.!!$R1 3848
2 TraesCS7D01G234300 chr7B 161195489 161200982 5493 True 1341.75 3354 92.8760 33 3878 4 chr7B.!!$R1 3845

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
116 117 1.210234 CTGCCTCCATGACCATGTGTA 59.790 52.381 8.93 0.0 37.11 2.90 F
897 2571 1.376609 GATTGAAGCGCGGGTCCAAT 61.377 55.000 8.83 8.5 0.00 3.16 F
1595 3286 0.595095 CTCCCTTGTGCTGCTTGAAC 59.405 55.000 0.00 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1080 2755 0.176680 CCGCAAGACCACTCTAGCAT 59.823 55.000 0.0 0.0 43.02 3.79 R
1768 3459 1.138036 TCCATGCCGTAGTCGTTCG 59.862 57.895 0.0 0.0 35.01 3.95 R
3336 5114 0.035036 GGATAGGAACTTAGCGGGGC 59.965 60.000 0.0 0.0 41.75 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.477053 TTGTTCTGAAGAGATCCTATCTGG 57.523 41.667 0.00 0.00 40.38 3.86
116 117 1.210234 CTGCCTCCATGACCATGTGTA 59.790 52.381 8.93 0.00 37.11 2.90
435 437 2.983592 GACTGGGTGGCCAAACGG 60.984 66.667 7.24 11.49 0.00 4.44
561 563 7.889873 TTTACCTTCACATTTTCTTCAAGGA 57.110 32.000 2.54 0.00 35.37 3.36
589 591 5.076182 TGGATTGCTGAAGGTGTATTTCAA 58.924 37.500 0.00 0.00 34.41 2.69
897 2571 1.376609 GATTGAAGCGCGGGTCCAAT 61.377 55.000 8.83 8.50 0.00 3.16
1080 2755 7.041372 GCAAGGAAACAACTAGAATTGTGACTA 60.041 37.037 0.00 0.00 42.01 2.59
1096 2771 4.158579 TGTGACTATGCTAGAGTGGTCTTG 59.841 45.833 10.91 0.00 33.84 3.02
1111 2786 1.066929 GTCTTGCGGGCCAAAATCAAT 60.067 47.619 4.39 0.00 31.94 2.57
1119 2794 3.636300 CGGGCCAAAATCAATCTATTGGA 59.364 43.478 4.39 0.00 44.01 3.53
1137 2814 8.393259 TCTATTGGATTATTATGCTGATTGGGT 58.607 33.333 0.00 0.00 0.00 4.51
1171 2848 5.772825 CTCTGCTAGAGTTGCTCTATCTT 57.227 43.478 6.36 0.00 41.49 2.40
1172 2849 6.147864 CTCTGCTAGAGTTGCTCTATCTTT 57.852 41.667 6.36 0.00 41.49 2.52
1182 2865 4.890158 TGCTCTATCTTTGGTGAGAACA 57.110 40.909 0.00 0.00 0.00 3.18
1304 2992 5.134339 ACAATTCCCCATCATTCTAGCCTAA 59.866 40.000 0.00 0.00 0.00 2.69
1340 3028 5.086058 GTGGTTATCACATTGCGTAAACAG 58.914 41.667 0.00 0.00 45.39 3.16
1418 3107 3.243771 CGACGGGCCTATTCTTAGAACAT 60.244 47.826 0.84 0.00 0.00 2.71
1595 3286 0.595095 CTCCCTTGTGCTGCTTGAAC 59.405 55.000 0.00 0.00 0.00 3.18
1596 3287 0.823356 TCCCTTGTGCTGCTTGAACC 60.823 55.000 0.00 0.00 0.00 3.62
1597 3288 1.283793 CCTTGTGCTGCTTGAACCG 59.716 57.895 0.00 0.00 0.00 4.44
1598 3289 1.283793 CTTGTGCTGCTTGAACCGG 59.716 57.895 0.00 0.00 0.00 5.28
1650 3341 1.199615 GCTGCTCCTAGTCTCCCTTT 58.800 55.000 0.00 0.00 0.00 3.11
2445 4156 4.778143 GCCCAAGCCGGACGACAT 62.778 66.667 5.05 0.00 36.56 3.06
2672 4383 1.416813 GAGCAAGCTGGACGTGATCG 61.417 60.000 0.00 0.00 33.62 3.69
2819 4530 3.335356 ATCCGTGGCTTCCAGCAGG 62.335 63.158 0.00 0.00 44.75 4.85
2825 4540 0.324943 TGGCTTCCAGCAGGACTAAC 59.675 55.000 0.00 0.00 45.73 2.34
2856 4577 3.134442 GCCATCCATATCCATCTCCTCTC 59.866 52.174 0.00 0.00 0.00 3.20
2871 4592 3.320129 TCCTCTCCTCTCCTACTCCTAC 58.680 54.545 0.00 0.00 0.00 3.18
2919 4640 5.558339 TCCACCTCTATATATACCCACTCCA 59.442 44.000 0.00 0.00 0.00 3.86
2948 4669 5.066505 AGCTGACAAGTTTAAGTTTCACTGG 59.933 40.000 0.00 0.00 0.00 4.00
2949 4670 5.163652 GCTGACAAGTTTAAGTTTCACTGGT 60.164 40.000 0.00 0.00 0.00 4.00
2950 4671 6.189677 TGACAAGTTTAAGTTTCACTGGTG 57.810 37.500 0.00 0.00 0.00 4.17
2951 4672 4.993905 ACAAGTTTAAGTTTCACTGGTGC 58.006 39.130 0.00 0.00 0.00 5.01
2952 4673 4.461081 ACAAGTTTAAGTTTCACTGGTGCA 59.539 37.500 0.00 0.00 0.00 4.57
2953 4674 5.127031 ACAAGTTTAAGTTTCACTGGTGCAT 59.873 36.000 0.00 0.00 0.00 3.96
2954 4675 5.852282 AGTTTAAGTTTCACTGGTGCATT 57.148 34.783 0.00 0.00 0.00 3.56
2955 4676 6.220726 AGTTTAAGTTTCACTGGTGCATTT 57.779 33.333 0.00 0.00 0.00 2.32
2956 4677 6.042143 AGTTTAAGTTTCACTGGTGCATTTG 58.958 36.000 0.00 0.00 0.00 2.32
2957 4678 5.843673 TTAAGTTTCACTGGTGCATTTGA 57.156 34.783 0.00 0.00 0.00 2.69
2958 4679 4.942761 AAGTTTCACTGGTGCATTTGAT 57.057 36.364 0.00 0.00 0.00 2.57
2959 4680 4.942761 AGTTTCACTGGTGCATTTGATT 57.057 36.364 0.00 0.00 0.00 2.57
2989 4710 9.855021 ATTGCTCGCCATTTTATTATTATTACC 57.145 29.630 0.00 0.00 0.00 2.85
3044 4765 7.038048 AGCCAATCATGTACTCATATATGTCG 58.962 38.462 12.42 7.71 33.00 4.35
3060 4781 3.024043 CGTGCTTGTGCCGTTTGC 61.024 61.111 0.00 0.00 38.71 3.68
3086 4813 8.116753 CACGTTTACTTATCAGCTTGGAATAAG 58.883 37.037 10.94 10.94 0.00 1.73
3087 4814 8.038944 ACGTTTACTTATCAGCTTGGAATAAGA 58.961 33.333 16.21 0.00 0.00 2.10
3100 4827 4.761975 TGGAATAAGATGTACGTTCACCC 58.238 43.478 0.00 0.00 0.00 4.61
3120 4847 3.361786 CCAAACCGAATAAACCATCCCT 58.638 45.455 0.00 0.00 0.00 4.20
3137 4864 5.949354 CCATCCCTTTGGTACTGATAACAAA 59.051 40.000 0.00 0.00 44.11 2.83
3154 4881 8.722394 TGATAACAAATATTGCGTGACTTGTTA 58.278 29.630 12.65 12.65 41.11 2.41
3216 4951 7.083062 TGCTATTATCAATGACCCTTGATCT 57.917 36.000 2.78 0.00 43.16 2.75
3295 5070 3.317149 CAGCAGCATAGGCATAACACAAT 59.683 43.478 0.67 0.00 44.61 2.71
3316 5094 8.458052 CACAATACACCAATGTACATAACACAT 58.542 33.333 9.21 0.00 44.11 3.21
3391 5176 6.578023 ACTACTTTGCTAGGATTAGAAGCAG 58.422 40.000 0.00 0.00 46.17 4.24
3423 5208 0.732880 CACCGAGTGAACTAGCACCG 60.733 60.000 0.00 0.00 39.59 4.94
3430 5215 1.661112 GTGAACTAGCACCGCATTCTC 59.339 52.381 0.00 0.00 32.68 2.87
3511 5301 9.127277 GGTTTGCCTATATATCTAGGAGTAGAG 57.873 40.741 16.42 0.00 40.76 2.43
3575 5365 3.071602 TGGACAGCATATCTAGGAAAGGC 59.928 47.826 0.00 0.00 0.00 4.35
3638 5428 7.749666 AGGATTCTATGCAGTGGTAATACAAT 58.250 34.615 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.197903 TCCAGATAGGATCTCTTCAGAACAA 58.802 40.000 0.00 0.00 43.07 2.83
1 2 5.770919 TCCAGATAGGATCTCTTCAGAACA 58.229 41.667 0.00 0.00 43.07 3.18
5 6 7.760183 AGGGCTCCAGATAGGATCTCTTCAG 62.760 52.000 0.00 0.00 40.49 3.02
6 7 6.005747 AGGGCTCCAGATAGGATCTCTTCA 62.006 50.000 0.00 0.00 40.49 3.02
7 8 3.502119 AGGGCTCCAGATAGGATCTCTTC 60.502 52.174 0.00 0.00 40.49 2.87
8 9 2.454381 AGGGCTCCAGATAGGATCTCTT 59.546 50.000 0.00 0.00 40.49 2.85
9 10 2.042979 GAGGGCTCCAGATAGGATCTCT 59.957 54.545 0.00 0.00 46.04 3.10
14 15 0.189574 CCAGAGGGCTCCAGATAGGA 59.810 60.000 0.00 0.00 46.75 2.94
15 16 0.189574 TCCAGAGGGCTCCAGATAGG 59.810 60.000 0.00 0.00 39.47 2.57
16 17 1.631405 CTCCAGAGGGCTCCAGATAG 58.369 60.000 0.00 0.00 0.00 2.08
17 18 0.470833 GCTCCAGAGGGCTCCAGATA 60.471 60.000 0.00 0.00 0.00 1.98
18 19 1.765657 GCTCCAGAGGGCTCCAGAT 60.766 63.158 0.00 0.00 0.00 2.90
19 20 2.364842 GCTCCAGAGGGCTCCAGA 60.365 66.667 0.00 0.00 0.00 3.86
20 21 3.478274 GGCTCCAGAGGGCTCCAG 61.478 72.222 0.00 0.00 0.00 3.86
22 23 2.687909 ATAGGGCTCCAGAGGGCTCC 62.688 65.000 0.00 0.00 0.00 4.70
23 24 0.766288 AATAGGGCTCCAGAGGGCTC 60.766 60.000 0.00 0.00 0.00 4.70
24 25 0.766288 GAATAGGGCTCCAGAGGGCT 60.766 60.000 0.00 0.00 0.00 5.19
25 26 0.766288 AGAATAGGGCTCCAGAGGGC 60.766 60.000 0.00 0.00 0.00 5.19
26 27 1.055040 CAGAATAGGGCTCCAGAGGG 58.945 60.000 0.00 0.00 0.00 4.30
27 28 1.055040 CCAGAATAGGGCTCCAGAGG 58.945 60.000 0.00 0.00 0.00 3.69
28 29 1.969923 CTCCAGAATAGGGCTCCAGAG 59.030 57.143 0.00 0.00 0.00 3.35
137 138 3.700038 TGAAAACCCAACGTAATGGTTGT 59.300 39.130 14.72 10.62 44.48 3.32
314 316 1.064463 CATCCAGGTGCATAGGGTGTT 60.064 52.381 7.03 0.00 0.00 3.32
317 319 0.327480 TCCATCCAGGTGCATAGGGT 60.327 55.000 0.00 0.00 39.02 4.34
435 437 1.814169 CCGTCCGAGCTTAAAGGGC 60.814 63.158 0.00 0.00 0.00 5.19
548 550 7.038516 AGCAATCCAAAGATCCTTGAAGAAAAT 60.039 33.333 5.59 0.00 0.00 1.82
561 563 3.771216 ACACCTTCAGCAATCCAAAGAT 58.229 40.909 0.00 0.00 0.00 2.40
589 591 5.003096 AGAATTCTTGTTGGGGACTTCAT 57.997 39.130 0.88 0.00 0.00 2.57
897 2571 7.083062 AGATGATGATTTACTCAAGGGCATA 57.917 36.000 0.00 0.00 37.44 3.14
936 2610 4.532834 AGTTTCTAACCTCTTTGCCAACA 58.467 39.130 0.00 0.00 0.00 3.33
975 2650 4.443913 TGTTGCATTGGAAGTCATGATG 57.556 40.909 0.00 0.00 0.00 3.07
1021 2696 4.287067 ACACACAATGAGGGTAACAGAGAT 59.713 41.667 0.00 0.00 39.74 2.75
1080 2755 0.176680 CCGCAAGACCACTCTAGCAT 59.823 55.000 0.00 0.00 43.02 3.79
1096 2771 3.383761 CAATAGATTGATTTTGGCCCGC 58.616 45.455 0.00 0.00 40.14 6.13
1098 2773 5.813513 ATCCAATAGATTGATTTTGGCCC 57.186 39.130 0.00 0.00 40.14 5.80
1111 2786 8.393259 ACCCAATCAGCATAATAATCCAATAGA 58.607 33.333 0.00 0.00 0.00 1.98
1119 2794 8.267183 TCATATCGACCCAATCAGCATAATAAT 58.733 33.333 0.00 0.00 0.00 1.28
1137 2814 3.991121 CTCTAGCAGAGTCGTCATATCGA 59.009 47.826 0.00 0.00 37.57 3.59
1166 2843 8.924511 AAATTTCTCTGTTCTCACCAAAGATA 57.075 30.769 0.00 0.00 0.00 1.98
1167 2844 7.308229 CGAAATTTCTCTGTTCTCACCAAAGAT 60.308 37.037 15.92 0.00 0.00 2.40
1168 2845 6.017934 CGAAATTTCTCTGTTCTCACCAAAGA 60.018 38.462 15.92 0.00 0.00 2.52
1169 2846 6.017934 TCGAAATTTCTCTGTTCTCACCAAAG 60.018 38.462 15.92 0.00 0.00 2.77
1170 2847 5.820423 TCGAAATTTCTCTGTTCTCACCAAA 59.180 36.000 15.92 0.00 0.00 3.28
1171 2848 5.364778 TCGAAATTTCTCTGTTCTCACCAA 58.635 37.500 15.92 0.00 0.00 3.67
1172 2849 4.956085 TCGAAATTTCTCTGTTCTCACCA 58.044 39.130 15.92 0.00 0.00 4.17
1182 2865 9.463443 CATTAAGTGGTTTTTCGAAATTTCTCT 57.537 29.630 12.12 7.37 0.00 3.10
1304 2992 6.783892 GTGATAACCACATGCAAAAATGTT 57.216 33.333 0.00 0.00 45.03 2.71
1340 3028 4.445385 CAGCTACCAAAAACAACAGAATGC 59.555 41.667 0.00 0.00 42.53 3.56
1483 3174 1.871039 TGGAAGCTTAAGTGCGTGTTC 59.129 47.619 0.00 0.00 38.13 3.18
1518 3209 0.320073 TGAGCTGCATTTTTGCTGGC 60.320 50.000 1.63 7.43 37.16 4.85
1522 3213 1.657094 CGGAATGAGCTGCATTTTTGC 59.343 47.619 1.02 0.00 46.90 3.68
1697 3388 4.760047 CCCACCGTCAGGCCTTCG 62.760 72.222 17.21 17.21 42.76 3.79
1768 3459 1.138036 TCCATGCCGTAGTCGTTCG 59.862 57.895 0.00 0.00 35.01 3.95
2276 3987 2.219325 GAGAGCGTCACCAGGTCCTG 62.219 65.000 12.40 12.40 36.85 3.86
2672 4383 1.882623 CTGCCCCTTGTTCTTCTTGAC 59.117 52.381 0.00 0.00 0.00 3.18
2819 4530 2.164422 GGATGGCAAAGGCAAGTTAGTC 59.836 50.000 0.00 0.00 42.43 2.59
2825 4540 2.298163 GGATATGGATGGCAAAGGCAAG 59.702 50.000 0.00 0.00 42.43 4.01
2856 4577 4.285260 GTCTAGGAGTAGGAGTAGGAGAGG 59.715 54.167 0.00 0.00 0.00 3.69
2897 4618 5.361285 GCTGGAGTGGGTATATATAGAGGTG 59.639 48.000 0.00 0.00 0.00 4.00
2919 4640 1.532868 CTTAAACTTGTCAGCTGCGCT 59.467 47.619 9.47 0.00 40.77 5.92
2950 4671 2.536130 GCGAGCAATGCAAATCAAATGC 60.536 45.455 8.35 0.00 44.08 3.56
2951 4672 2.029970 GGCGAGCAATGCAAATCAAATG 59.970 45.455 8.35 0.00 0.00 2.32
2952 4673 2.273557 GGCGAGCAATGCAAATCAAAT 58.726 42.857 8.35 0.00 0.00 2.32
2953 4674 1.000618 TGGCGAGCAATGCAAATCAAA 59.999 42.857 8.35 0.00 0.00 2.69
2954 4675 0.602060 TGGCGAGCAATGCAAATCAA 59.398 45.000 8.35 0.00 0.00 2.57
2955 4676 0.818938 ATGGCGAGCAATGCAAATCA 59.181 45.000 8.35 0.74 0.00 2.57
2956 4677 1.930567 AATGGCGAGCAATGCAAATC 58.069 45.000 8.35 0.00 0.00 2.17
2957 4678 2.389962 AAATGGCGAGCAATGCAAAT 57.610 40.000 8.35 0.00 0.00 2.32
2958 4679 2.166821 AAAATGGCGAGCAATGCAAA 57.833 40.000 8.35 0.00 0.00 3.68
2959 4680 3.523606 ATAAAATGGCGAGCAATGCAA 57.476 38.095 8.35 0.00 0.00 4.08
2967 4688 8.932791 AGACGGTAATAATAATAAAATGGCGAG 58.067 33.333 0.00 0.00 0.00 5.03
2989 4710 6.309009 CCATATTCATCATTAGACCGAAGACG 59.691 42.308 0.00 0.00 39.43 4.18
3060 4781 5.856126 TTCCAAGCTGATAAGTAAACGTG 57.144 39.130 0.00 0.00 0.00 4.49
3086 4813 1.461897 CGGTTTGGGTGAACGTACATC 59.538 52.381 0.00 0.00 0.00 3.06
3087 4814 1.070445 TCGGTTTGGGTGAACGTACAT 59.930 47.619 0.00 0.00 0.00 2.29
3100 4827 5.167845 CAAAGGGATGGTTTATTCGGTTTG 58.832 41.667 0.00 0.00 0.00 2.93
3120 4847 7.965655 CACGCAATATTTGTTATCAGTACCAAA 59.034 33.333 0.00 0.00 0.00 3.28
3137 4864 7.377766 AGTTGAATAACAAGTCACGCAATAT 57.622 32.000 0.00 0.00 37.58 1.28
3295 5070 9.892130 TCATTATGTGTTATGTACATTGGTGTA 57.108 29.630 14.77 0.00 39.39 2.90
3312 5087 9.726232 GGCTTATATATTGTGCATCATTATGTG 57.274 33.333 0.00 0.00 35.38 3.21
3316 5094 6.542005 CGGGGCTTATATATTGTGCATCATTA 59.458 38.462 0.00 0.00 0.00 1.90
3336 5114 0.035036 GGATAGGAACTTAGCGGGGC 59.965 60.000 0.00 0.00 41.75 5.80
3391 5176 0.804989 CTCGGTGGTTCCTGAATTGC 59.195 55.000 0.00 0.00 0.00 3.56
3423 5208 4.569564 GCTGGAAATTGAAATGGAGAATGC 59.430 41.667 0.00 0.00 0.00 3.56
3430 5215 2.736400 GCTCCGCTGGAAATTGAAATGG 60.736 50.000 0.00 0.00 0.00 3.16
3511 5301 0.180406 ACTGGGTGTGGACTTGTCAC 59.820 55.000 3.08 0.00 35.82 3.67
3575 5365 7.231705 TGTGTTGTATTGATTTTGTGCTTTG 57.768 32.000 0.00 0.00 0.00 2.77
3638 5428 1.916506 TTGGAAACCCATGCGATGAA 58.083 45.000 0.00 0.00 32.92 2.57
3730 5520 8.688151 CCTCTTCTTGCAGTACTAGTAAAGTAT 58.312 37.037 3.61 0.00 42.63 2.12
3832 5623 8.349568 AGTTTTTCCCTCTTAATCCAACATAC 57.650 34.615 0.00 0.00 0.00 2.39


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.