Multiple sequence alignment - TraesCS7D01G232800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G232800 chr7D 100.000 7388 0 0 1 7388 194242422 194249809 0.000000e+00 13644.0
1 TraesCS7D01G232800 chr7D 83.146 712 103 11 1 700 37811895 37811189 1.050000e-177 634.0
2 TraesCS7D01G232800 chr7B 95.093 3179 93 16 2714 5875 158170193 158173325 0.000000e+00 4948.0
3 TraesCS7D01G232800 chr7B 92.568 1803 90 18 763 2536 158168381 158170168 0.000000e+00 2547.0
4 TraesCS7D01G232800 chr7B 94.886 704 33 3 5875 6576 158173357 158174059 0.000000e+00 1098.0
5 TraesCS7D01G232800 chr7B 96.289 485 14 3 6906 7388 158174349 158174831 0.000000e+00 793.0
6 TraesCS7D01G232800 chr7B 87.400 627 73 5 1 623 718940739 718941363 0.000000e+00 715.0
7 TraesCS7D01G232800 chr7B 85.417 192 6 5 6719 6909 158174140 158174310 5.890000e-41 180.0
8 TraesCS7D01G232800 chr7B 95.238 84 4 0 6604 6687 158174056 158174139 4.650000e-27 134.0
9 TraesCS7D01G232800 chr7A 95.307 2429 86 9 3453 5875 203965928 203968334 0.000000e+00 3829.0
10 TraesCS7D01G232800 chr7A 91.662 1811 97 21 763 2534 203963275 203965070 0.000000e+00 2459.0
11 TraesCS7D01G232800 chr7A 94.724 815 35 6 5875 6687 203968363 203969171 0.000000e+00 1260.0
12 TraesCS7D01G232800 chr7A 95.486 731 30 2 2715 3443 203965107 203965836 0.000000e+00 1164.0
13 TraesCS7D01G232800 chr7A 91.071 672 32 8 6719 7388 203969172 203969817 0.000000e+00 883.0
14 TraesCS7D01G232800 chr7A 94.444 162 9 0 2534 2695 451519972 451519811 4.430000e-62 250.0
15 TraesCS7D01G232800 chr1B 83.063 862 112 19 5774 6609 614594042 614593189 0.000000e+00 752.0
16 TraesCS7D01G232800 chr1B 83.462 520 53 11 5260 5773 614612662 614612170 3.140000e-123 453.0
17 TraesCS7D01G232800 chr1D 85.146 754 89 12 5871 6609 449121914 449121169 0.000000e+00 750.0
18 TraesCS7D01G232800 chr1D 85.915 710 89 7 1 700 365441382 365442090 0.000000e+00 747.0
19 TraesCS7D01G232800 chr1D 83.721 516 51 11 5264 5773 449128636 449128148 2.430000e-124 457.0
20 TraesCS7D01G232800 chr1D 90.625 96 9 0 5780 5875 449122037 449121942 2.160000e-25 128.0
21 TraesCS7D01G232800 chr4D 86.792 636 79 3 1 632 507878496 507877862 0.000000e+00 704.0
22 TraesCS7D01G232800 chr4D 84.375 704 96 9 1 701 495625141 495624449 0.000000e+00 678.0
23 TraesCS7D01G232800 chr4D 93.976 166 10 0 2532 2697 334164389 334164554 1.230000e-62 252.0
24 TraesCS7D01G232800 chr4D 94.444 162 9 0 2534 2695 117421191 117421352 4.430000e-62 250.0
25 TraesCS7D01G232800 chr5A 86.217 653 79 8 1 645 608853724 608854373 0.000000e+00 697.0
26 TraesCS7D01G232800 chr5A 94.444 162 9 0 2534 2695 320214244 320214405 4.430000e-62 250.0
27 TraesCS7D01G232800 chr4B 84.188 702 106 3 1 701 577009836 577009139 0.000000e+00 676.0
28 TraesCS7D01G232800 chr6A 83.685 711 104 8 1 703 611909207 611908501 0.000000e+00 660.0
29 TraesCS7D01G232800 chr6A 83.688 705 98 13 1 701 560633902 560633211 0.000000e+00 649.0
30 TraesCS7D01G232800 chr6A 77.341 1196 179 43 4260 5418 617403605 617404745 2.260000e-174 623.0
31 TraesCS7D01G232800 chr6A 81.400 543 74 19 1680 2212 617319278 617319803 1.150000e-112 418.0
32 TraesCS7D01G232800 chr6A 81.343 536 76 19 5342 5869 617557246 617557765 1.480000e-111 414.0
33 TraesCS7D01G232800 chr6A 86.072 359 46 4 5283 5640 617225914 617226269 4.180000e-102 383.0
34 TraesCS7D01G232800 chr6A 83.954 349 48 4 5229 5576 617344022 617344363 1.990000e-85 327.0
35 TraesCS7D01G232800 chr6A 85.015 327 41 7 5272 5593 617239372 617239695 7.150000e-85 326.0
36 TraesCS7D01G232800 chr6A 79.310 464 67 16 4260 4712 617248743 617249188 1.560000e-76 298.0
37 TraesCS7D01G232800 chr6A 83.758 314 41 9 5342 5649 617322598 617322907 9.380000e-74 289.0
38 TraesCS7D01G232800 chr6A 77.938 485 84 15 6138 6606 617344903 617345380 1.570000e-71 281.0
39 TraesCS7D01G232800 chr6A 80.110 362 35 14 3905 4262 617321463 617321791 1.240000e-57 235.0
40 TraesCS7D01G232800 chr6A 82.463 268 43 2 2767 3030 617223606 617223873 1.600000e-56 231.0
41 TraesCS7D01G232800 chr6A 79.501 361 44 9 3905 4262 617224615 617224948 5.770000e-56 230.0
42 TraesCS7D01G232800 chr6A 89.326 178 18 1 1980 2156 617553831 617554008 9.650000e-54 222.0
43 TraesCS7D01G232800 chr6A 82.051 273 34 9 3311 3577 617224243 617224506 1.250000e-52 219.0
44 TraesCS7D01G232800 chr6A 76.524 328 65 6 6155 6473 617352592 617352916 1.270000e-37 169.0
45 TraesCS7D01G232800 chr6A 82.390 159 14 7 4260 4414 617350942 617351090 7.780000e-25 126.0
46 TraesCS7D01G232800 chr6A 84.906 106 15 1 3639 3744 617555722 617555826 1.010000e-18 106.0
47 TraesCS7D01G232800 chr6A 81.148 122 22 1 2714 2835 617236606 617236726 6.100000e-16 97.1
48 TraesCS7D01G232800 chr6A 81.301 123 19 4 2714 2835 617349962 617350081 6.100000e-16 97.1
49 TraesCS7D01G232800 chr6A 86.747 83 6 4 2302 2383 617247815 617247893 3.670000e-13 87.9
50 TraesCS7D01G232800 chr6A 88.571 70 8 0 2713 2782 617223528 617223597 1.320000e-12 86.1
51 TraesCS7D01G232800 chr1A 81.319 546 79 18 5342 5879 2839303 2838773 8.860000e-114 422.0
52 TraesCS7D01G232800 chr1A 80.110 543 82 17 1680 2212 2646758 2646232 1.500000e-101 381.0
53 TraesCS7D01G232800 chr1A 84.244 311 38 10 5342 5645 2643617 2643311 7.250000e-75 292.0
54 TraesCS7D01G232800 chr1A 79.494 395 68 11 6138 6526 2662419 2662032 1.220000e-67 268.0
55 TraesCS7D01G232800 chr1A 95.062 162 8 0 2534 2695 39438999 39438838 9.510000e-64 255.0
56 TraesCS7D01G232800 chr1A 86.667 105 13 1 3640 3744 2840821 2840718 1.680000e-21 115.0
57 TraesCS7D01G232800 chr6B 81.157 536 77 15 1686 2212 717419354 717418834 6.900000e-110 409.0
58 TraesCS7D01G232800 chr6B 83.807 352 50 7 5229 5576 717408407 717408059 1.990000e-85 327.0
59 TraesCS7D01G232800 chr6B 82.097 391 53 10 4610 4991 717409004 717408622 1.200000e-82 318.0
60 TraesCS7D01G232800 chr6B 86.498 237 31 1 1980 2215 717402798 717402562 7.350000e-65 259.0
61 TraesCS7D01G232800 chr6B 94.444 162 9 0 2534 2695 481857851 481858012 4.430000e-62 250.0
62 TraesCS7D01G232800 chr6B 77.238 391 73 13 6142 6526 717407503 717407123 1.610000e-51 215.0
63 TraesCS7D01G232800 chr6B 88.202 178 19 2 1980 2156 717141602 717141426 2.090000e-50 211.0
64 TraesCS7D01G232800 chr6D 80.112 538 81 17 1685 2212 472501229 472500708 1.950000e-100 377.0
65 TraesCS7D01G232800 chr6D 84.543 317 34 13 5342 5649 472497873 472497563 4.330000e-77 300.0
66 TraesCS7D01G232800 chr6D 77.344 384 70 12 6142 6520 472488394 472488023 2.090000e-50 211.0
67 TraesCS7D01G232800 chr6D 86.792 106 13 1 3639 3744 472427084 472426980 4.680000e-22 117.0
68 TraesCS7D01G232800 chr6D 90.323 62 6 0 6013 6074 472423675 472423614 1.710000e-11 82.4
69 TraesCS7D01G232800 chr3B 79.437 462 75 14 244 701 534137915 534138360 7.200000e-80 309.0
70 TraesCS7D01G232800 chr3B 92.941 170 10 2 2528 2696 201028674 201028506 5.720000e-61 246.0
71 TraesCS7D01G232800 chr3B 78.095 315 66 3 389 701 724012533 724012846 5.850000e-46 196.0
72 TraesCS7D01G232800 chr5D 93.373 166 11 0 2532 2697 59947680 59947845 5.720000e-61 246.0
73 TraesCS7D01G232800 chr2D 91.429 175 13 2 2534 2708 296364209 296364037 9.580000e-59 239.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G232800 chr7D 194242422 194249809 7387 False 13644.000000 13644 100.000000 1 7388 1 chr7D.!!$F1 7387
1 TraesCS7D01G232800 chr7D 37811189 37811895 706 True 634.000000 634 83.146000 1 700 1 chr7D.!!$R1 699
2 TraesCS7D01G232800 chr7B 158168381 158174831 6450 False 1616.666667 4948 93.248500 763 7388 6 chr7B.!!$F2 6625
3 TraesCS7D01G232800 chr7B 718940739 718941363 624 False 715.000000 715 87.400000 1 623 1 chr7B.!!$F1 622
4 TraesCS7D01G232800 chr7A 203963275 203969817 6542 False 1919.000000 3829 93.650000 763 7388 5 chr7A.!!$F1 6625
5 TraesCS7D01G232800 chr1B 614593189 614594042 853 True 752.000000 752 83.063000 5774 6609 1 chr1B.!!$R1 835
6 TraesCS7D01G232800 chr1D 365441382 365442090 708 False 747.000000 747 85.915000 1 700 1 chr1D.!!$F1 699
7 TraesCS7D01G232800 chr1D 449121169 449122037 868 True 439.000000 750 87.885500 5780 6609 2 chr1D.!!$R2 829
8 TraesCS7D01G232800 chr4D 507877862 507878496 634 True 704.000000 704 86.792000 1 632 1 chr4D.!!$R2 631
9 TraesCS7D01G232800 chr4D 495624449 495625141 692 True 678.000000 678 84.375000 1 701 1 chr4D.!!$R1 700
10 TraesCS7D01G232800 chr5A 608853724 608854373 649 False 697.000000 697 86.217000 1 645 1 chr5A.!!$F2 644
11 TraesCS7D01G232800 chr4B 577009139 577009836 697 True 676.000000 676 84.188000 1 701 1 chr4B.!!$R1 700
12 TraesCS7D01G232800 chr6A 611908501 611909207 706 True 660.000000 660 83.685000 1 703 1 chr6A.!!$R2 702
13 TraesCS7D01G232800 chr6A 560633211 560633902 691 True 649.000000 649 83.688000 1 701 1 chr6A.!!$R1 700
14 TraesCS7D01G232800 chr6A 617403605 617404745 1140 False 623.000000 623 77.341000 4260 5418 1 chr6A.!!$F1 1158
15 TraesCS7D01G232800 chr6A 617319278 617322907 3629 False 314.000000 418 81.756000 1680 5649 3 chr6A.!!$F5 3969
16 TraesCS7D01G232800 chr6A 617344022 617345380 1358 False 304.000000 327 80.946000 5229 6606 2 chr6A.!!$F6 1377
17 TraesCS7D01G232800 chr6A 617553831 617557765 3934 False 247.333333 414 85.191667 1980 5869 3 chr6A.!!$F8 3889
18 TraesCS7D01G232800 chr6A 617223528 617226269 2741 False 229.820000 383 83.731600 2713 5640 5 chr6A.!!$F2 2927
19 TraesCS7D01G232800 chr6A 617236606 617239695 3089 False 211.550000 326 83.081500 2714 5593 2 chr6A.!!$F3 2879
20 TraesCS7D01G232800 chr1A 2643311 2646758 3447 True 336.500000 381 82.177000 1680 5645 2 chr1A.!!$R3 3965
21 TraesCS7D01G232800 chr1A 2838773 2840821 2048 True 268.500000 422 83.993000 3640 5879 2 chr1A.!!$R4 2239
22 TraesCS7D01G232800 chr6B 717418834 717419354 520 True 409.000000 409 81.157000 1686 2212 1 chr6B.!!$R3 526
23 TraesCS7D01G232800 chr6B 717407123 717409004 1881 True 286.666667 327 81.047333 4610 6526 3 chr6B.!!$R4 1916
24 TraesCS7D01G232800 chr6D 472497563 472501229 3666 True 338.500000 377 82.327500 1685 5649 2 chr6D.!!$R3 3964

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
447 468 0.033109 TCGAGCAGGAGGAGGATGAA 60.033 55.000 0.00 0.0 0.00 2.57 F
748 771 0.034896 AGACTCGGCACAAAACGGAT 59.965 50.000 0.00 0.0 0.00 4.18 F
749 772 0.165944 GACTCGGCACAAAACGGATG 59.834 55.000 0.00 0.0 0.00 3.51 F
755 778 0.309612 GCACAAAACGGATGTTCGGT 59.690 50.000 0.00 0.0 37.31 4.69 F
785 808 0.605319 TGGAGTTTGGCTAGGCAACG 60.605 55.000 29.51 0.0 46.39 4.10 F
1484 1527 0.740737 GCTGCTTGAACGCCCATAAT 59.259 50.000 0.00 0.0 0.00 1.28 F
2904 3073 0.991920 CCCCCGCTCACCCATTATAT 59.008 55.000 0.00 0.0 0.00 0.86 F
3759 4916 1.300931 GTGTCTCAGTTGCTGCGGA 60.301 57.895 0.00 0.0 0.00 5.54 F
5262 7210 1.676006 AGTGAAGTTGAACAAAGGGCG 59.324 47.619 0.00 0.0 0.00 6.13 F
5596 7612 1.066858 GTCCTGGAGTTGCGATTCTGA 60.067 52.381 0.00 0.0 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2325 2436 1.490490 GAAGGATGGGGTGATACTGCA 59.510 52.381 0.00 0.00 0.00 4.41 R
2683 2800 1.063867 ACTGCTATGTACTCCCTCCGT 60.064 52.381 0.00 0.00 0.00 4.69 R
2712 2829 1.201414 GGGGGTGCATTAACTTGTTCG 59.799 52.381 0.00 0.00 0.00 3.95 R
2775 2935 6.727231 TCCTACAGTTCAAGGGTGTAAATAGA 59.273 38.462 0.00 0.00 33.40 1.98 R
2890 3059 3.941483 CGGGATTGATATAATGGGTGAGC 59.059 47.826 0.00 0.00 0.00 4.26 R
3191 3428 0.541392 CCACACCCTGCAGCATAGTA 59.459 55.000 8.66 0.00 0.00 1.82 R
4786 6676 0.179020 CTGCCAGTTGGACCAAGTGA 60.179 55.000 34.36 19.53 44.73 3.41 R
5576 7592 1.066858 TCAGAATCGCAACTCCAGGAC 60.067 52.381 0.00 0.00 0.00 3.85 R
6369 8518 0.108804 ACTACGCTCCCACGTTCATG 60.109 55.000 0.00 0.00 45.75 3.07 R
6717 8881 0.174845 CGTGCGAGGGTTATCTTGGA 59.825 55.000 0.00 0.00 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 3.072468 CTCCACCCGTCCGCCTAA 61.072 66.667 0.00 0.00 0.00 2.69
67 68 0.038744 CCTAATAGCCATGCCCCCAG 59.961 60.000 0.00 0.00 0.00 4.45
108 109 0.389817 CATTTCTGACACCGGAGCGA 60.390 55.000 9.46 0.00 0.00 4.93
225 241 1.215679 AGGAGGAGGAGGACGAGGAA 61.216 60.000 0.00 0.00 0.00 3.36
278 297 2.687566 GGAGGATGTGGGGGACGT 60.688 66.667 0.00 0.00 0.00 4.34
299 318 1.826921 GCGACGGGGATCTACAGGA 60.827 63.158 0.00 0.00 0.00 3.86
381 401 3.473647 CGGCAGGAGATGGAGGCA 61.474 66.667 0.00 0.00 0.00 4.75
387 407 1.067295 AGGAGATGGAGGCACAACAA 58.933 50.000 0.00 0.00 0.00 2.83
413 434 1.000993 AGGAGGTGGAGATGCTCGT 59.999 57.895 0.00 0.00 0.00 4.18
447 468 0.033109 TCGAGCAGGAGGAGGATGAA 60.033 55.000 0.00 0.00 0.00 2.57
526 547 3.325870 TCCGACGACGAAGAGTAGTTAA 58.674 45.455 9.28 0.00 38.82 2.01
560 582 9.828852 CATAGATGTAGTACGTAGGATTTCTTC 57.171 37.037 0.00 0.00 0.00 2.87
579 601 4.951715 TCTTCTGCATGCTTTGTATGGATT 59.048 37.500 20.33 0.00 0.00 3.01
662 685 1.809619 CATGAATGCGTCCGGTCGT 60.810 57.895 21.70 2.53 0.00 4.34
665 688 0.173935 TGAATGCGTCCGGTCGTATT 59.826 50.000 29.98 29.98 45.39 1.89
669 692 1.514873 GCGTCCGGTCGTATTCGTT 60.515 57.895 21.70 0.00 38.33 3.85
706 729 4.516092 GGATTTGTAAAGTCCGACGATG 57.484 45.455 0.00 0.00 43.07 3.84
707 730 3.242316 GGATTTGTAAAGTCCGACGATGC 60.242 47.826 0.00 0.00 43.07 3.91
708 731 2.736144 TTGTAAAGTCCGACGATGCT 57.264 45.000 0.00 0.00 0.00 3.79
709 732 2.273370 TGTAAAGTCCGACGATGCTC 57.727 50.000 0.00 0.00 0.00 4.26
710 733 1.816835 TGTAAAGTCCGACGATGCTCT 59.183 47.619 0.00 0.00 0.00 4.09
711 734 2.230508 TGTAAAGTCCGACGATGCTCTT 59.769 45.455 0.00 0.00 0.00 2.85
712 735 3.441222 TGTAAAGTCCGACGATGCTCTTA 59.559 43.478 0.00 0.00 0.00 2.10
713 736 2.563471 AAGTCCGACGATGCTCTTAC 57.437 50.000 0.00 0.00 0.00 2.34
714 737 0.739561 AGTCCGACGATGCTCTTACC 59.260 55.000 0.00 0.00 0.00 2.85
715 738 0.248949 GTCCGACGATGCTCTTACCC 60.249 60.000 0.00 0.00 0.00 3.69
716 739 1.299165 CCGACGATGCTCTTACCCG 60.299 63.158 0.00 0.00 0.00 5.28
717 740 1.721664 CCGACGATGCTCTTACCCGA 61.722 60.000 0.00 0.00 0.00 5.14
718 741 0.311165 CGACGATGCTCTTACCCGAT 59.689 55.000 0.00 0.00 0.00 4.18
719 742 1.663445 CGACGATGCTCTTACCCGATC 60.663 57.143 0.00 0.00 0.00 3.69
720 743 0.674534 ACGATGCTCTTACCCGATCC 59.325 55.000 0.00 0.00 0.00 3.36
721 744 0.673985 CGATGCTCTTACCCGATCCA 59.326 55.000 0.00 0.00 0.00 3.41
722 745 1.068588 CGATGCTCTTACCCGATCCAA 59.931 52.381 0.00 0.00 0.00 3.53
723 746 2.483013 CGATGCTCTTACCCGATCCAAA 60.483 50.000 0.00 0.00 0.00 3.28
724 747 2.396590 TGCTCTTACCCGATCCAAAC 57.603 50.000 0.00 0.00 0.00 2.93
725 748 1.626321 TGCTCTTACCCGATCCAAACA 59.374 47.619 0.00 0.00 0.00 2.83
726 749 2.238646 TGCTCTTACCCGATCCAAACAT 59.761 45.455 0.00 0.00 0.00 2.71
727 750 3.452990 TGCTCTTACCCGATCCAAACATA 59.547 43.478 0.00 0.00 0.00 2.29
728 751 3.808174 GCTCTTACCCGATCCAAACATAC 59.192 47.826 0.00 0.00 0.00 2.39
729 752 4.682320 GCTCTTACCCGATCCAAACATACA 60.682 45.833 0.00 0.00 0.00 2.29
730 753 5.018539 TCTTACCCGATCCAAACATACAG 57.981 43.478 0.00 0.00 0.00 2.74
731 754 4.712829 TCTTACCCGATCCAAACATACAGA 59.287 41.667 0.00 0.00 0.00 3.41
732 755 3.261981 ACCCGATCCAAACATACAGAC 57.738 47.619 0.00 0.00 0.00 3.51
733 756 2.838202 ACCCGATCCAAACATACAGACT 59.162 45.455 0.00 0.00 0.00 3.24
734 757 3.118738 ACCCGATCCAAACATACAGACTC 60.119 47.826 0.00 0.00 0.00 3.36
735 758 3.116300 CCGATCCAAACATACAGACTCG 58.884 50.000 0.00 0.00 0.00 4.18
736 759 3.116300 CGATCCAAACATACAGACTCGG 58.884 50.000 0.00 0.00 0.00 4.63
737 760 2.380084 TCCAAACATACAGACTCGGC 57.620 50.000 0.00 0.00 0.00 5.54
738 761 1.621317 TCCAAACATACAGACTCGGCA 59.379 47.619 0.00 0.00 0.00 5.69
739 762 1.732259 CCAAACATACAGACTCGGCAC 59.268 52.381 0.00 0.00 0.00 5.01
740 763 2.412870 CAAACATACAGACTCGGCACA 58.587 47.619 0.00 0.00 0.00 4.57
741 764 2.805671 CAAACATACAGACTCGGCACAA 59.194 45.455 0.00 0.00 0.00 3.33
742 765 2.831685 ACATACAGACTCGGCACAAA 57.168 45.000 0.00 0.00 0.00 2.83
743 766 3.120321 ACATACAGACTCGGCACAAAA 57.880 42.857 0.00 0.00 0.00 2.44
744 767 2.806244 ACATACAGACTCGGCACAAAAC 59.194 45.455 0.00 0.00 0.00 2.43
745 768 1.493772 TACAGACTCGGCACAAAACG 58.506 50.000 0.00 0.00 0.00 3.60
746 769 1.157870 ACAGACTCGGCACAAAACGG 61.158 55.000 0.00 0.00 0.00 4.44
747 770 0.878523 CAGACTCGGCACAAAACGGA 60.879 55.000 0.00 0.00 0.00 4.69
748 771 0.034896 AGACTCGGCACAAAACGGAT 59.965 50.000 0.00 0.00 0.00 4.18
749 772 0.165944 GACTCGGCACAAAACGGATG 59.834 55.000 0.00 0.00 0.00 3.51
750 773 0.534203 ACTCGGCACAAAACGGATGT 60.534 50.000 0.00 0.00 0.00 3.06
751 774 0.591170 CTCGGCACAAAACGGATGTT 59.409 50.000 0.00 0.00 40.98 2.71
752 775 0.589223 TCGGCACAAAACGGATGTTC 59.411 50.000 0.00 0.00 37.31 3.18
753 776 0.724453 CGGCACAAAACGGATGTTCG 60.724 55.000 0.00 0.00 37.31 3.95
754 777 0.386731 GGCACAAAACGGATGTTCGG 60.387 55.000 0.00 0.00 37.31 4.30
755 778 0.309612 GCACAAAACGGATGTTCGGT 59.690 50.000 0.00 0.00 37.31 4.69
756 779 1.662026 GCACAAAACGGATGTTCGGTC 60.662 52.381 0.00 0.00 37.31 4.79
757 780 0.863144 ACAAAACGGATGTTCGGTCG 59.137 50.000 0.00 0.00 37.31 4.79
758 781 0.863144 CAAAACGGATGTTCGGTCGT 59.137 50.000 0.00 0.00 37.31 4.34
759 782 0.863144 AAAACGGATGTTCGGTCGTG 59.137 50.000 0.00 0.00 37.31 4.35
760 783 1.562575 AAACGGATGTTCGGTCGTGC 61.563 55.000 0.00 0.00 37.31 5.34
761 784 3.186047 CGGATGTTCGGTCGTGCC 61.186 66.667 0.00 0.00 0.00 5.01
785 808 0.605319 TGGAGTTTGGCTAGGCAACG 60.605 55.000 29.51 0.00 46.39 4.10
842 865 4.373116 CGGCACACGGTACAGCCT 62.373 66.667 13.47 0.00 44.85 4.58
1217 1255 4.930696 AGGTTTTCCCCACTCGAATTTAT 58.069 39.130 0.00 0.00 41.86 1.40
1219 1257 5.417894 AGGTTTTCCCCACTCGAATTTATTC 59.582 40.000 0.00 0.00 41.86 1.75
1255 1294 1.455217 CTGGGGATACGAGACGGGT 60.455 63.158 0.00 0.00 37.60 5.28
1439 1482 2.726351 GGCTCAGGGGTCTTCCTCG 61.726 68.421 0.00 0.00 39.67 4.63
1484 1527 0.740737 GCTGCTTGAACGCCCATAAT 59.259 50.000 0.00 0.00 0.00 1.28
1498 1541 7.129109 ACGCCCATAATTCGATATTTACTTG 57.871 36.000 0.00 0.00 0.00 3.16
1516 1559 7.701539 TTACTTGTGCTGTTCATTTCCATAT 57.298 32.000 0.00 0.00 0.00 1.78
1532 1575 2.592194 CATATCATGCAATTCCGCTGC 58.408 47.619 0.00 0.00 40.35 5.25
1548 1591 3.466836 CGCTGCTGGTTAGGATGATAAA 58.533 45.455 0.00 0.00 0.00 1.40
1549 1592 3.876914 CGCTGCTGGTTAGGATGATAAAA 59.123 43.478 0.00 0.00 0.00 1.52
1552 1595 5.300286 GCTGCTGGTTAGGATGATAAAATGT 59.700 40.000 0.00 0.00 0.00 2.71
1558 1601 6.951198 TGGTTAGGATGATAAAATGTTGGTGT 59.049 34.615 0.00 0.00 0.00 4.16
1661 1707 2.729028 TGTCTAGGGCTTATTTGGGC 57.271 50.000 0.00 0.00 0.00 5.36
1676 1722 1.963338 GGGCGCTGGCTGCTATAAG 60.963 63.158 14.58 0.00 40.11 1.73
1693 1742 9.330063 CTGCTATAAGGATTTCAGTGTTTATCA 57.670 33.333 0.00 0.00 0.00 2.15
1754 1804 7.231115 TGAACCATGTATCATGTTGATTATGGG 59.769 37.037 23.16 12.96 45.10 4.00
1772 1822 9.825972 GATTATGGGTTATTGATATTGTCGTTG 57.174 33.333 0.00 0.00 0.00 4.10
1789 1839 2.160417 CGTTGCCAATCAGGAAAGAGTC 59.840 50.000 0.00 0.00 34.76 3.36
1839 1889 2.836981 AGCAAAGTCAGCTAGAGATGGT 59.163 45.455 0.00 0.00 41.32 3.55
1953 2010 3.771577 TTGTGTGTTTGGGTTGGTTTT 57.228 38.095 0.00 0.00 0.00 2.43
1985 2069 9.797556 GTGTTAAAAGTTGATCCAGTTTACTTT 57.202 29.630 0.33 0.00 39.87 2.66
2159 2244 4.158394 TCTGCCATTCTTTATTCAAGCACC 59.842 41.667 0.00 0.00 31.70 5.01
2249 2334 3.203040 AGATTGCCCCAACACTTATAGCT 59.797 43.478 0.00 0.00 0.00 3.32
2325 2436 3.305720 TGTAGAAGTCCTGTGAGTTGGT 58.694 45.455 0.00 0.00 34.24 3.67
2417 2528 7.382218 CACAATTCCAAGAACCTTGTGTATTTC 59.618 37.037 12.46 0.00 40.94 2.17
2488 2605 9.495572 TTTACTTTTCACCATTTCTGTGTTTTT 57.504 25.926 0.00 0.00 35.25 1.94
2538 2655 9.965824 TTGAATGTTTCTTTTCAAGATTACTCC 57.034 29.630 0.00 0.00 37.03 3.85
2539 2656 8.576442 TGAATGTTTCTTTTCAAGATTACTCCC 58.424 33.333 0.00 0.00 37.38 4.30
2540 2657 8.712228 AATGTTTCTTTTCAAGATTACTCCCT 57.288 30.769 0.00 0.00 37.38 4.20
2541 2658 7.745620 TGTTTCTTTTCAAGATTACTCCCTC 57.254 36.000 0.00 0.00 37.38 4.30
2542 2659 7.518188 TGTTTCTTTTCAAGATTACTCCCTCT 58.482 34.615 0.00 0.00 37.38 3.69
2543 2660 7.445402 TGTTTCTTTTCAAGATTACTCCCTCTG 59.555 37.037 0.00 0.00 37.38 3.35
2544 2661 6.688073 TCTTTTCAAGATTACTCCCTCTGT 57.312 37.500 0.00 0.00 31.20 3.41
2545 2662 7.079451 TCTTTTCAAGATTACTCCCTCTGTT 57.921 36.000 0.00 0.00 31.20 3.16
2546 2663 7.162082 TCTTTTCAAGATTACTCCCTCTGTTC 58.838 38.462 0.00 0.00 31.20 3.18
2547 2664 5.422214 TTCAAGATTACTCCCTCTGTTCC 57.578 43.478 0.00 0.00 0.00 3.62
2548 2665 4.689062 TCAAGATTACTCCCTCTGTTCCT 58.311 43.478 0.00 0.00 0.00 3.36
2549 2666 5.838955 TCAAGATTACTCCCTCTGTTCCTA 58.161 41.667 0.00 0.00 0.00 2.94
2550 2667 6.261435 TCAAGATTACTCCCTCTGTTCCTAA 58.739 40.000 0.00 0.00 0.00 2.69
2551 2668 6.729100 TCAAGATTACTCCCTCTGTTCCTAAA 59.271 38.462 0.00 0.00 0.00 1.85
2552 2669 7.403231 TCAAGATTACTCCCTCTGTTCCTAAAT 59.597 37.037 0.00 0.00 0.00 1.40
2553 2670 8.705594 CAAGATTACTCCCTCTGTTCCTAAATA 58.294 37.037 0.00 0.00 0.00 1.40
2554 2671 9.453830 AAGATTACTCCCTCTGTTCCTAAATAT 57.546 33.333 0.00 0.00 0.00 1.28
2558 2675 9.725206 TTACTCCCTCTGTTCCTAAATATAAGT 57.275 33.333 0.00 0.00 0.00 2.24
2559 2676 8.252624 ACTCCCTCTGTTCCTAAATATAAGTC 57.747 38.462 0.00 0.00 0.00 3.01
2560 2677 8.068733 ACTCCCTCTGTTCCTAAATATAAGTCT 58.931 37.037 0.00 0.00 0.00 3.24
2561 2678 8.855804 TCCCTCTGTTCCTAAATATAAGTCTT 57.144 34.615 0.00 0.00 0.00 3.01
2562 2679 9.280456 TCCCTCTGTTCCTAAATATAAGTCTTT 57.720 33.333 0.00 0.00 0.00 2.52
2563 2680 9.907229 CCCTCTGTTCCTAAATATAAGTCTTTT 57.093 33.333 0.00 0.00 0.00 2.27
2594 2711 3.848019 GCAATATGCATTACATACGCAGC 59.152 43.478 3.54 0.00 43.99 5.25
2595 2712 4.613394 GCAATATGCATTACATACGCAGCA 60.613 41.667 3.54 0.00 43.99 4.41
2596 2713 5.451039 CAATATGCATTACATACGCAGCAA 58.549 37.500 3.54 0.00 43.99 3.91
2597 2714 5.687770 ATATGCATTACATACGCAGCAAA 57.312 34.783 3.54 0.00 43.99 3.68
2598 2715 3.839051 TGCATTACATACGCAGCAAAA 57.161 38.095 0.00 0.00 0.00 2.44
2599 2716 4.368874 TGCATTACATACGCAGCAAAAT 57.631 36.364 0.00 0.00 0.00 1.82
2600 2717 4.104066 TGCATTACATACGCAGCAAAATG 58.896 39.130 0.00 0.00 0.00 2.32
2601 2718 4.142513 TGCATTACATACGCAGCAAAATGA 60.143 37.500 5.79 0.00 0.00 2.57
2602 2719 4.438797 GCATTACATACGCAGCAAAATGAG 59.561 41.667 5.79 0.00 0.00 2.90
2603 2720 5.572211 CATTACATACGCAGCAAAATGAGT 58.428 37.500 5.79 0.00 37.05 3.41
2604 2721 3.476295 ACATACGCAGCAAAATGAGTG 57.524 42.857 5.79 0.00 34.83 3.51
2605 2722 3.073678 ACATACGCAGCAAAATGAGTGA 58.926 40.909 5.79 0.00 34.83 3.41
2606 2723 3.501828 ACATACGCAGCAAAATGAGTGAA 59.498 39.130 5.79 0.00 34.83 3.18
2607 2724 4.156556 ACATACGCAGCAAAATGAGTGAAT 59.843 37.500 5.79 0.00 34.83 2.57
2608 2725 3.207474 ACGCAGCAAAATGAGTGAATC 57.793 42.857 0.00 0.00 31.59 2.52
2609 2726 2.816087 ACGCAGCAAAATGAGTGAATCT 59.184 40.909 0.00 0.00 31.59 2.40
2610 2727 4.002982 ACGCAGCAAAATGAGTGAATCTA 58.997 39.130 0.00 0.00 31.59 1.98
2611 2728 4.142816 ACGCAGCAAAATGAGTGAATCTAC 60.143 41.667 0.00 0.00 31.59 2.59
2612 2729 4.142838 CGCAGCAAAATGAGTGAATCTACA 60.143 41.667 0.00 0.00 0.00 2.74
2613 2730 5.091431 GCAGCAAAATGAGTGAATCTACAC 58.909 41.667 0.00 0.00 40.60 2.90
2627 2744 9.469097 AGTGAATCTACACTCTAAACTATGTCT 57.531 33.333 0.00 0.00 46.36 3.41
2652 2769 3.795623 ACATCCGTATGTAGTCCACAC 57.204 47.619 0.00 0.00 44.66 3.82
2653 2770 3.362706 ACATCCGTATGTAGTCCACACT 58.637 45.455 0.00 0.00 44.66 3.55
2654 2771 3.130516 ACATCCGTATGTAGTCCACACTG 59.869 47.826 0.00 0.00 44.66 3.66
2655 2772 3.076079 TCCGTATGTAGTCCACACTGA 57.924 47.619 0.00 0.00 40.86 3.41
2656 2773 3.423749 TCCGTATGTAGTCCACACTGAA 58.576 45.455 0.00 0.00 40.86 3.02
2657 2774 3.827876 TCCGTATGTAGTCCACACTGAAA 59.172 43.478 0.00 0.00 40.86 2.69
2658 2775 4.464951 TCCGTATGTAGTCCACACTGAAAT 59.535 41.667 0.00 0.00 40.86 2.17
2659 2776 4.804139 CCGTATGTAGTCCACACTGAAATC 59.196 45.833 0.00 0.00 40.86 2.17
2660 2777 5.394224 CCGTATGTAGTCCACACTGAAATCT 60.394 44.000 0.00 0.00 40.86 2.40
2661 2778 5.744345 CGTATGTAGTCCACACTGAAATCTC 59.256 44.000 0.00 0.00 40.86 2.75
2662 2779 6.404844 CGTATGTAGTCCACACTGAAATCTCT 60.405 42.308 0.00 0.00 40.86 3.10
2663 2780 7.201705 CGTATGTAGTCCACACTGAAATCTCTA 60.202 40.741 0.00 0.00 40.86 2.43
2664 2781 6.911250 TGTAGTCCACACTGAAATCTCTAA 57.089 37.500 0.00 0.00 33.62 2.10
2665 2782 7.297936 TGTAGTCCACACTGAAATCTCTAAA 57.702 36.000 0.00 0.00 33.62 1.85
2666 2783 7.732025 TGTAGTCCACACTGAAATCTCTAAAA 58.268 34.615 0.00 0.00 33.62 1.52
2667 2784 8.208224 TGTAGTCCACACTGAAATCTCTAAAAA 58.792 33.333 0.00 0.00 33.62 1.94
2668 2785 7.736447 AGTCCACACTGAAATCTCTAAAAAG 57.264 36.000 0.00 0.00 0.00 2.27
2669 2786 7.509546 AGTCCACACTGAAATCTCTAAAAAGA 58.490 34.615 0.00 0.00 0.00 2.52
2670 2787 7.442666 AGTCCACACTGAAATCTCTAAAAAGAC 59.557 37.037 0.00 0.00 0.00 3.01
2671 2788 7.442666 GTCCACACTGAAATCTCTAAAAAGACT 59.557 37.037 0.00 0.00 0.00 3.24
2672 2789 7.993183 TCCACACTGAAATCTCTAAAAAGACTT 59.007 33.333 0.00 0.00 0.00 3.01
2673 2790 9.273016 CCACACTGAAATCTCTAAAAAGACTTA 57.727 33.333 0.00 0.00 0.00 2.24
2689 2806 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
2690 2807 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2691 2808 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2692 2809 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2693 2810 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2694 2811 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
2710 2827 3.003482 GGGAGTACATAGCAGTGTAGACG 59.997 52.174 0.00 0.00 35.40 4.18
2711 2828 3.626670 GGAGTACATAGCAGTGTAGACGT 59.373 47.826 0.00 0.00 35.40 4.34
2712 2829 4.260702 GGAGTACATAGCAGTGTAGACGTC 60.261 50.000 7.70 7.70 35.40 4.34
2775 2935 7.361894 GCAATTTTAAATGCTGAACCACAATT 58.638 30.769 6.55 0.00 39.46 2.32
2904 3073 0.991920 CCCCCGCTCACCCATTATAT 59.008 55.000 0.00 0.00 0.00 0.86
2912 3081 3.941483 GCTCACCCATTATATCAATCCCG 59.059 47.826 0.00 0.00 0.00 5.14
2950 3121 9.300681 CAGCATAGGGAAAATATTGGAGATTTA 57.699 33.333 0.00 0.00 0.00 1.40
2964 3135 7.473735 TTGGAGATTTAATATGGTGCAAACA 57.526 32.000 0.00 0.00 0.00 2.83
3191 3428 1.846712 GAGCCAAAGAGCCCTCCTGT 61.847 60.000 0.00 0.00 0.00 4.00
3348 4401 3.947868 ACTGATTCATCCAACTCTGTGG 58.052 45.455 0.00 0.00 40.33 4.17
3536 4688 4.431416 TTTAGTTGACTCCACACACCAT 57.569 40.909 0.00 0.00 0.00 3.55
3550 4703 3.181445 ACACACCATAGGAAGAAGCACAA 60.181 43.478 0.00 0.00 0.00 3.33
3601 4756 6.655003 CCAAATTAGTCTGTACATCACCTTGT 59.345 38.462 0.00 0.00 0.00 3.16
3680 4835 1.917782 GCGCGGAAGGCAAACATGTA 61.918 55.000 8.83 0.00 43.84 2.29
3744 4901 7.441836 TGTTGAGTTCTAAGTGATACATGTGT 58.558 34.615 9.11 0.10 0.00 3.72
3759 4916 1.300931 GTGTCTCAGTTGCTGCGGA 60.301 57.895 0.00 0.00 0.00 5.54
3819 4976 4.336532 AACAAACTGTTGACGACTTGAC 57.663 40.909 0.00 0.00 39.45 3.18
3851 5008 5.062308 GTCAAGCTGGTACTTAAGATTCACG 59.938 44.000 10.09 0.00 0.00 4.35
3868 5025 2.496070 TCACGAAGATCGAGGATTTGGT 59.504 45.455 6.78 0.00 43.74 3.67
4235 5412 8.547967 TTGTTTTCAGGTAGTCATCATCTTAC 57.452 34.615 0.00 0.00 0.00 2.34
4599 6316 4.880886 TCAAGTGTTGTGATTGACAGTG 57.119 40.909 0.00 0.00 35.44 3.66
4607 6324 9.317936 AGTGTTGTGATTGACAGTGTATATATG 57.682 33.333 0.00 0.00 35.44 1.78
5161 7073 7.897864 AGTTTACTGCTAGTTCAAGACAGTAT 58.102 34.615 0.00 0.00 41.88 2.12
5162 7074 8.368668 AGTTTACTGCTAGTTCAAGACAGTATT 58.631 33.333 0.00 0.00 41.88 1.89
5163 7075 8.436200 GTTTACTGCTAGTTCAAGACAGTATTG 58.564 37.037 1.11 1.11 41.88 1.90
5164 7076 6.102897 ACTGCTAGTTCAAGACAGTATTGT 57.897 37.500 7.78 0.00 39.69 2.71
5165 7077 7.228314 ACTGCTAGTTCAAGACAGTATTGTA 57.772 36.000 7.78 0.00 39.69 2.41
5166 7078 7.091443 ACTGCTAGTTCAAGACAGTATTGTAC 58.909 38.462 9.10 9.10 39.69 2.90
5167 7079 6.988522 TGCTAGTTCAAGACAGTATTGTACA 58.011 36.000 17.00 0.00 37.76 2.90
5168 7080 7.438564 TGCTAGTTCAAGACAGTATTGTACAA 58.561 34.615 17.00 11.41 37.76 2.41
5169 7081 8.094548 TGCTAGTTCAAGACAGTATTGTACAAT 58.905 33.333 23.80 23.80 37.76 2.71
5245 7193 5.763204 AGTGGGTAAGTAACATTGTGAAGTG 59.237 40.000 0.00 0.00 0.00 3.16
5262 7210 1.676006 AGTGAAGTTGAACAAAGGGCG 59.324 47.619 0.00 0.00 0.00 6.13
5338 7347 6.758416 TCCGAGTTGATTTCTCACATGAATAG 59.242 38.462 0.00 0.00 32.79 1.73
5576 7592 1.384502 TCAGATGTGGGGCTAGGGG 60.385 63.158 0.00 0.00 0.00 4.79
5596 7612 1.066858 GTCCTGGAGTTGCGATTCTGA 60.067 52.381 0.00 0.00 0.00 3.27
5602 7618 3.209410 GGAGTTGCGATTCTGATTCCAT 58.791 45.455 0.00 0.00 0.00 3.41
5642 7658 9.132521 CACATAGAATTTGATTTTGGACTTCAC 57.867 33.333 0.00 0.00 0.00 3.18
5655 7683 1.275291 GACTTCACCCTCGATTCCACA 59.725 52.381 0.00 0.00 0.00 4.17
5670 7698 6.375174 TCGATTCCACAAAGATTTGATGACAT 59.625 34.615 12.07 0.00 40.55 3.06
5713 7742 1.305718 AGACCTCCAGCCCTCTGAC 60.306 63.158 0.00 0.00 42.95 3.51
5982 8088 2.325583 AAACGGAAAGCAGAGTGACA 57.674 45.000 0.00 0.00 0.00 3.58
5988 8107 3.614616 CGGAAAGCAGAGTGACAAGTATC 59.385 47.826 0.00 0.00 0.00 2.24
6003 8122 8.292448 GTGACAAGTATCATGTTTCAGACAAAT 58.708 33.333 0.00 0.00 42.62 2.32
6369 8518 4.090930 GCAAATGAAGCACATGATGACAAC 59.909 41.667 0.00 0.00 39.39 3.32
6413 8562 3.121030 CTTCCCTGTGCGCTTCGG 61.121 66.667 9.73 6.99 0.00 4.30
6418 8567 2.967076 CTGTGCGCTTCGGTGTGT 60.967 61.111 9.73 0.00 0.00 3.72
6424 8573 0.712222 GCGCTTCGGTGTGTACTTAC 59.288 55.000 0.00 0.00 0.00 2.34
6459 8608 2.500229 TGTTTGCTTAGGAACTTCCGG 58.500 47.619 0.00 0.00 42.75 5.14
6516 8665 1.792367 CGATGTCGACTTGTTTGCTGA 59.208 47.619 17.92 0.00 43.02 4.26
6531 8687 4.811555 TTGCTGATGTGTGTACAAAGTC 57.188 40.909 0.00 0.00 40.84 3.01
6587 8749 3.945285 AGACGAATGTTGTTTTCTGGTGT 59.055 39.130 0.00 0.00 0.00 4.16
6590 8752 3.242712 CGAATGTTGTTTTCTGGTGTTGC 59.757 43.478 0.00 0.00 0.00 4.17
6623 8787 9.515020 TTTATCTGTTCACACTCAACAATTTTC 57.485 29.630 0.00 0.00 33.36 2.29
6687 8851 3.494332 AGATTTGCAGAAGCTCCAAAGT 58.506 40.909 0.00 0.00 42.74 2.66
6688 8852 3.505293 AGATTTGCAGAAGCTCCAAAGTC 59.495 43.478 0.00 0.00 42.74 3.01
6689 8853 2.645838 TTGCAGAAGCTCCAAAGTCT 57.354 45.000 0.00 0.00 42.74 3.24
6690 8854 2.175878 TGCAGAAGCTCCAAAGTCTC 57.824 50.000 0.00 0.00 42.74 3.36
6691 8855 1.271054 TGCAGAAGCTCCAAAGTCTCC 60.271 52.381 0.00 0.00 42.74 3.71
6692 8856 1.719600 CAGAAGCTCCAAAGTCTCCG 58.280 55.000 0.00 0.00 0.00 4.63
6693 8857 1.001406 CAGAAGCTCCAAAGTCTCCGT 59.999 52.381 0.00 0.00 0.00 4.69
6694 8858 1.694696 AGAAGCTCCAAAGTCTCCGTT 59.305 47.619 0.00 0.00 0.00 4.44
6695 8859 2.104963 AGAAGCTCCAAAGTCTCCGTTT 59.895 45.455 0.00 0.00 0.00 3.60
6696 8860 3.323979 AGAAGCTCCAAAGTCTCCGTTTA 59.676 43.478 0.00 0.00 0.00 2.01
6697 8861 3.764237 AGCTCCAAAGTCTCCGTTTAA 57.236 42.857 0.00 0.00 0.00 1.52
6698 8862 4.081322 AGCTCCAAAGTCTCCGTTTAAA 57.919 40.909 0.00 0.00 0.00 1.52
6699 8863 4.652822 AGCTCCAAAGTCTCCGTTTAAAT 58.347 39.130 0.00 0.00 0.00 1.40
6700 8864 4.695928 AGCTCCAAAGTCTCCGTTTAAATC 59.304 41.667 0.00 0.00 0.00 2.17
6701 8865 4.454504 GCTCCAAAGTCTCCGTTTAAATCA 59.545 41.667 0.00 0.00 0.00 2.57
6702 8866 5.390991 GCTCCAAAGTCTCCGTTTAAATCAG 60.391 44.000 0.00 0.00 0.00 2.90
6703 8867 5.617252 TCCAAAGTCTCCGTTTAAATCAGT 58.383 37.500 0.00 0.00 0.00 3.41
6704 8868 6.059484 TCCAAAGTCTCCGTTTAAATCAGTT 58.941 36.000 0.00 0.00 0.00 3.16
6705 8869 6.544564 TCCAAAGTCTCCGTTTAAATCAGTTT 59.455 34.615 0.00 0.00 0.00 2.66
6706 8870 6.636850 CCAAAGTCTCCGTTTAAATCAGTTTG 59.363 38.462 0.00 0.92 0.00 2.93
6707 8871 5.941948 AGTCTCCGTTTAAATCAGTTTGG 57.058 39.130 0.00 0.00 0.00 3.28
6708 8872 5.374071 AGTCTCCGTTTAAATCAGTTTGGT 58.626 37.500 0.00 0.00 0.00 3.67
6709 8873 6.527423 AGTCTCCGTTTAAATCAGTTTGGTA 58.473 36.000 0.00 0.00 0.00 3.25
6710 8874 6.426025 AGTCTCCGTTTAAATCAGTTTGGTAC 59.574 38.462 0.00 0.00 0.00 3.34
6711 8875 6.426025 GTCTCCGTTTAAATCAGTTTGGTACT 59.574 38.462 0.00 0.00 37.68 2.73
6712 8876 7.599998 GTCTCCGTTTAAATCAGTTTGGTACTA 59.400 37.037 0.00 0.00 34.56 1.82
6713 8877 8.149647 TCTCCGTTTAAATCAGTTTGGTACTAA 58.850 33.333 0.00 0.00 34.56 2.24
6714 8878 8.314143 TCCGTTTAAATCAGTTTGGTACTAAG 57.686 34.615 0.00 0.00 34.56 2.18
6715 8879 7.019418 CCGTTTAAATCAGTTTGGTACTAAGC 58.981 38.462 0.00 0.00 34.56 3.09
6716 8880 7.094933 CCGTTTAAATCAGTTTGGTACTAAGCT 60.095 37.037 2.40 2.40 34.56 3.74
6717 8881 8.287503 CGTTTAAATCAGTTTGGTACTAAGCTT 58.712 33.333 5.58 3.48 34.56 3.74
6777 8941 5.175127 AGCAAAGTTGTCCGTTTTCAATTT 58.825 33.333 0.00 0.00 0.00 1.82
6778 8942 5.290885 AGCAAAGTTGTCCGTTTTCAATTTC 59.709 36.000 0.00 0.00 0.00 2.17
6779 8943 5.062809 GCAAAGTTGTCCGTTTTCAATTTCA 59.937 36.000 0.00 0.00 0.00 2.69
6834 8998 6.616260 GCTGGTTGCTTGAAAATAAAATGTCG 60.616 38.462 0.00 0.00 38.95 4.35
7068 9277 7.259290 TGAAAAGCATATAAAGATCGAACCC 57.741 36.000 0.00 0.00 0.00 4.11
7181 9390 2.024080 AGTAATGCCAATCACACCCCAT 60.024 45.455 0.00 0.00 0.00 4.00
7190 9399 5.278957 GCCAATCACACCCCATATTATTGAC 60.279 44.000 0.00 0.00 0.00 3.18
7193 9402 3.146066 CACACCCCATATTATTGACCCG 58.854 50.000 0.00 0.00 0.00 5.28
7287 9496 5.761234 GGTCTTGGTGTACAACAGTTTATCA 59.239 40.000 14.34 0.00 34.76 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 1.821332 CGCTCCTCATCCAAAGGCC 60.821 63.158 0.00 0.00 33.65 5.19
71 72 1.221840 GGCTCGCTCCTCATCCAAA 59.778 57.895 0.00 0.00 0.00 3.28
73 74 1.340399 AATGGCTCGCTCCTCATCCA 61.340 55.000 0.00 0.00 0.00 3.41
76 77 0.835941 AGAAATGGCTCGCTCCTCAT 59.164 50.000 0.00 0.00 0.00 2.90
173 174 1.499438 TCTCCGGATCCACTACATCCT 59.501 52.381 13.41 0.00 38.18 3.24
225 241 1.719378 TCCTCCTCCTCAAAGTCCTCT 59.281 52.381 0.00 0.00 0.00 3.69
278 297 1.672854 CTGTAGATCCCCGTCGCCAA 61.673 60.000 0.00 0.00 0.00 4.52
299 318 1.927527 AGGATGGCCTGTTGCTCCT 60.928 57.895 3.32 3.06 44.90 3.69
381 401 1.071471 CTCCTCCGTGGCTTGTTGT 59.929 57.895 0.00 0.00 35.26 3.32
391 411 2.060980 GCATCTCCACCTCCTCCGT 61.061 63.158 0.00 0.00 0.00 4.69
413 434 1.957177 GCTCGACCTCATCCATGTAGA 59.043 52.381 0.00 0.00 0.00 2.59
447 468 2.369001 GGGTAGGAGGGCTCTGGT 59.631 66.667 0.00 0.00 0.00 4.00
526 547 8.310382 CCTACGTACTACATCTATGTACTACCT 58.690 40.741 11.25 5.95 41.97 3.08
560 582 5.981315 CCTTAAATCCATACAAAGCATGCAG 59.019 40.000 21.98 11.80 0.00 4.41
579 601 6.486657 CCGCCTTTCTCATATTTCATCCTTAA 59.513 38.462 0.00 0.00 0.00 1.85
634 657 3.457234 GACGCATTCATGGACAGTGATA 58.543 45.455 0.00 0.00 0.00 2.15
645 668 0.387929 ATACGACCGGACGCATTCAT 59.612 50.000 25.79 8.12 36.70 2.57
650 673 2.100797 CGAATACGACCGGACGCA 59.899 61.111 25.79 14.45 42.66 5.24
662 685 2.896168 CCCCTCAAACGCTAACGAATA 58.104 47.619 0.00 0.00 43.93 1.75
665 688 1.375013 GCCCCTCAAACGCTAACGA 60.375 57.895 0.00 0.00 43.93 3.85
669 692 4.090588 CCGGCCCCTCAAACGCTA 62.091 66.667 0.00 0.00 0.00 4.26
703 726 2.872858 GTTTGGATCGGGTAAGAGCATC 59.127 50.000 0.00 0.00 0.00 3.91
704 727 2.238646 TGTTTGGATCGGGTAAGAGCAT 59.761 45.455 0.00 0.00 0.00 3.79
705 728 1.626321 TGTTTGGATCGGGTAAGAGCA 59.374 47.619 0.00 0.00 0.00 4.26
706 729 2.396590 TGTTTGGATCGGGTAAGAGC 57.603 50.000 0.00 0.00 0.00 4.09
707 730 5.018539 TGTATGTTTGGATCGGGTAAGAG 57.981 43.478 0.00 0.00 0.00 2.85
708 731 4.712829 TCTGTATGTTTGGATCGGGTAAGA 59.287 41.667 0.00 0.00 0.00 2.10
709 732 4.809426 GTCTGTATGTTTGGATCGGGTAAG 59.191 45.833 0.00 0.00 0.00 2.34
710 733 4.468510 AGTCTGTATGTTTGGATCGGGTAA 59.531 41.667 0.00 0.00 0.00 2.85
711 734 4.028131 AGTCTGTATGTTTGGATCGGGTA 58.972 43.478 0.00 0.00 0.00 3.69
712 735 2.838202 AGTCTGTATGTTTGGATCGGGT 59.162 45.455 0.00 0.00 0.00 5.28
713 736 3.458189 GAGTCTGTATGTTTGGATCGGG 58.542 50.000 0.00 0.00 0.00 5.14
714 737 3.116300 CGAGTCTGTATGTTTGGATCGG 58.884 50.000 0.00 0.00 0.00 4.18
715 738 3.116300 CCGAGTCTGTATGTTTGGATCG 58.884 50.000 0.00 0.00 0.00 3.69
716 739 2.866762 GCCGAGTCTGTATGTTTGGATC 59.133 50.000 0.00 0.00 0.00 3.36
717 740 2.236146 TGCCGAGTCTGTATGTTTGGAT 59.764 45.455 0.00 0.00 0.00 3.41
718 741 1.621317 TGCCGAGTCTGTATGTTTGGA 59.379 47.619 0.00 0.00 0.00 3.53
719 742 1.732259 GTGCCGAGTCTGTATGTTTGG 59.268 52.381 0.00 0.00 0.00 3.28
720 743 2.412870 TGTGCCGAGTCTGTATGTTTG 58.587 47.619 0.00 0.00 0.00 2.93
721 744 2.831685 TGTGCCGAGTCTGTATGTTT 57.168 45.000 0.00 0.00 0.00 2.83
722 745 2.831685 TTGTGCCGAGTCTGTATGTT 57.168 45.000 0.00 0.00 0.00 2.71
723 746 2.806244 GTTTTGTGCCGAGTCTGTATGT 59.194 45.455 0.00 0.00 0.00 2.29
724 747 2.159841 CGTTTTGTGCCGAGTCTGTATG 60.160 50.000 0.00 0.00 0.00 2.39
725 748 2.066262 CGTTTTGTGCCGAGTCTGTAT 58.934 47.619 0.00 0.00 0.00 2.29
726 749 1.493772 CGTTTTGTGCCGAGTCTGTA 58.506 50.000 0.00 0.00 0.00 2.74
727 750 1.157870 CCGTTTTGTGCCGAGTCTGT 61.158 55.000 0.00 0.00 0.00 3.41
728 751 0.878523 TCCGTTTTGTGCCGAGTCTG 60.879 55.000 0.00 0.00 0.00 3.51
729 752 0.034896 ATCCGTTTTGTGCCGAGTCT 59.965 50.000 0.00 0.00 0.00 3.24
730 753 0.165944 CATCCGTTTTGTGCCGAGTC 59.834 55.000 0.00 0.00 0.00 3.36
731 754 0.534203 ACATCCGTTTTGTGCCGAGT 60.534 50.000 0.00 0.00 0.00 4.18
732 755 0.591170 AACATCCGTTTTGTGCCGAG 59.409 50.000 0.00 0.00 28.09 4.63
733 756 0.589223 GAACATCCGTTTTGTGCCGA 59.411 50.000 0.00 0.00 34.75 5.54
734 757 0.724453 CGAACATCCGTTTTGTGCCG 60.724 55.000 0.00 0.00 34.75 5.69
735 758 0.386731 CCGAACATCCGTTTTGTGCC 60.387 55.000 0.00 0.00 34.75 5.01
736 759 0.309612 ACCGAACATCCGTTTTGTGC 59.690 50.000 0.00 0.00 34.75 4.57
737 760 1.397945 CGACCGAACATCCGTTTTGTG 60.398 52.381 0.00 0.00 34.75 3.33
738 761 0.863144 CGACCGAACATCCGTTTTGT 59.137 50.000 0.00 0.00 34.75 2.83
739 762 0.863144 ACGACCGAACATCCGTTTTG 59.137 50.000 0.00 0.00 34.75 2.44
740 763 0.863144 CACGACCGAACATCCGTTTT 59.137 50.000 0.00 0.00 34.75 2.43
741 764 1.562575 GCACGACCGAACATCCGTTT 61.563 55.000 0.00 0.00 34.75 3.60
742 765 2.025418 GCACGACCGAACATCCGTT 61.025 57.895 0.00 0.00 38.33 4.44
743 766 2.431942 GCACGACCGAACATCCGT 60.432 61.111 0.00 0.00 35.46 4.69
744 767 3.186047 GGCACGACCGAACATCCG 61.186 66.667 0.00 0.00 0.00 4.18
757 780 2.604174 CCAAACTCCACGACGGCAC 61.604 63.158 0.00 0.00 33.14 5.01
758 781 2.280524 CCAAACTCCACGACGGCA 60.281 61.111 0.00 0.00 33.14 5.69
759 782 2.775032 TAGCCAAACTCCACGACGGC 62.775 60.000 0.00 0.00 39.90 5.68
760 783 0.736325 CTAGCCAAACTCCACGACGG 60.736 60.000 0.00 0.00 0.00 4.79
761 784 0.736325 CCTAGCCAAACTCCACGACG 60.736 60.000 0.00 0.00 0.00 5.12
801 824 0.032540 CTGTGTTGCCTGCCTTTTCC 59.967 55.000 0.00 0.00 0.00 3.13
842 865 0.962855 CTCGCCTCTGTGTCTCCTGA 60.963 60.000 0.00 0.00 0.00 3.86
1255 1294 5.278808 CCAACATAGATCGGAATAAGACGGA 60.279 44.000 0.00 0.00 0.00 4.69
1439 1482 2.138831 GTGGGATCCGGGGTAGGAC 61.139 68.421 5.45 0.00 44.07 3.85
1484 1527 7.609760 ATGAACAGCACAAGTAAATATCGAA 57.390 32.000 0.00 0.00 0.00 3.71
1498 1541 4.980434 GCATGATATGGAAATGAACAGCAC 59.020 41.667 0.00 0.00 0.00 4.40
1516 1559 1.659622 CCAGCAGCGGAATTGCATGA 61.660 55.000 0.00 0.00 43.92 3.07
1532 1575 7.122650 ACACCAACATTTTATCATCCTAACCAG 59.877 37.037 0.00 0.00 0.00 4.00
1574 1617 4.754114 GCATAAATTCTGCACCACCAAAAA 59.246 37.500 7.81 0.00 39.46 1.94
1575 1618 4.202295 TGCATAAATTCTGCACCACCAAAA 60.202 37.500 10.65 0.00 44.30 2.44
1713 1762 2.107378 TGGTTCATGGCTGGTCAGTTAA 59.893 45.455 0.00 0.00 0.00 2.01
1754 1804 7.192913 TGATTGGCAACGACAATATCAATAAC 58.807 34.615 0.00 0.00 41.86 1.89
1867 1920 6.476378 TCAAAAGATACAGAAGAGGAAAGGG 58.524 40.000 0.00 0.00 0.00 3.95
1879 1932 6.149973 ACCACATGTGACATCAAAAGATACAG 59.850 38.462 27.46 6.35 0.00 2.74
1941 1998 2.368875 ACACACACAAAAACCAACCCAA 59.631 40.909 0.00 0.00 0.00 4.12
1953 2010 6.151985 ACTGGATCAACTTTTAACACACACAA 59.848 34.615 0.00 0.00 0.00 3.33
2159 2244 3.119459 TCTCTAGTTTTAGTGCTGGCGAG 60.119 47.826 0.00 0.00 0.00 5.03
2249 2334 2.498644 TGAACACCAACACTGTTCCA 57.501 45.000 8.43 0.00 44.71 3.53
2300 2411 4.592485 ACTCACAGGACTTCTACAACAG 57.408 45.455 0.00 0.00 0.00 3.16
2325 2436 1.490490 GAAGGATGGGGTGATACTGCA 59.510 52.381 0.00 0.00 0.00 4.41
2396 2507 5.701224 AGGAAATACACAAGGTTCTTGGAA 58.299 37.500 11.65 0.00 0.00 3.53
2527 2644 6.546428 TTAGGAACAGAGGGAGTAATCTTG 57.454 41.667 0.00 0.00 0.00 3.02
2535 2652 8.485578 AGACTTATATTTAGGAACAGAGGGAG 57.514 38.462 0.00 0.00 0.00 4.30
2536 2653 8.855804 AAGACTTATATTTAGGAACAGAGGGA 57.144 34.615 0.00 0.00 0.00 4.20
2537 2654 9.907229 AAAAGACTTATATTTAGGAACAGAGGG 57.093 33.333 0.00 0.00 0.00 4.30
2579 2696 4.350346 TCATTTTGCTGCGTATGTAATGC 58.650 39.130 0.00 0.00 40.81 3.56
2580 2697 5.453266 CACTCATTTTGCTGCGTATGTAATG 59.547 40.000 0.00 0.00 0.00 1.90
2581 2698 5.353956 TCACTCATTTTGCTGCGTATGTAAT 59.646 36.000 0.00 0.00 0.00 1.89
2582 2699 4.693095 TCACTCATTTTGCTGCGTATGTAA 59.307 37.500 0.00 0.00 0.00 2.41
2583 2700 4.249661 TCACTCATTTTGCTGCGTATGTA 58.750 39.130 0.00 0.00 0.00 2.29
2584 2701 3.073678 TCACTCATTTTGCTGCGTATGT 58.926 40.909 0.00 0.00 0.00 2.29
2585 2702 3.745332 TCACTCATTTTGCTGCGTATG 57.255 42.857 0.00 0.00 0.00 2.39
2586 2703 4.637534 AGATTCACTCATTTTGCTGCGTAT 59.362 37.500 0.00 0.00 0.00 3.06
2587 2704 4.002982 AGATTCACTCATTTTGCTGCGTA 58.997 39.130 0.00 0.00 0.00 4.42
2588 2705 2.816087 AGATTCACTCATTTTGCTGCGT 59.184 40.909 0.00 0.00 0.00 5.24
2589 2706 3.482722 AGATTCACTCATTTTGCTGCG 57.517 42.857 0.00 0.00 0.00 5.18
2590 2707 5.091431 GTGTAGATTCACTCATTTTGCTGC 58.909 41.667 0.00 0.00 35.68 5.25
2591 2708 6.492007 AGTGTAGATTCACTCATTTTGCTG 57.508 37.500 0.00 0.00 44.07 4.41
2622 2739 9.339850 GGACTACATACGGATGTATATAGACAT 57.660 37.037 20.64 12.70 45.42 3.06
2623 2740 8.323567 TGGACTACATACGGATGTATATAGACA 58.676 37.037 20.64 12.12 45.42 3.41
2624 2741 8.610896 GTGGACTACATACGGATGTATATAGAC 58.389 40.741 20.64 10.95 45.42 2.59
2625 2742 8.323567 TGTGGACTACATACGGATGTATATAGA 58.676 37.037 20.64 0.00 45.42 1.98
2626 2743 8.396390 GTGTGGACTACATACGGATGTATATAG 58.604 40.741 20.64 13.28 45.42 1.31
2627 2744 8.105197 AGTGTGGACTACATACGGATGTATATA 58.895 37.037 20.64 0.52 45.42 0.86
2628 2745 6.946583 AGTGTGGACTACATACGGATGTATAT 59.053 38.462 20.64 12.15 45.42 0.86
2629 2746 6.206048 CAGTGTGGACTACATACGGATGTATA 59.794 42.308 20.64 1.71 45.42 1.47
2630 2747 5.009710 CAGTGTGGACTACATACGGATGTAT 59.990 44.000 20.64 11.04 45.42 2.29
2631 2748 4.337274 CAGTGTGGACTACATACGGATGTA 59.663 45.833 19.32 19.32 44.77 2.29
2633 2750 3.380320 TCAGTGTGGACTACATACGGATG 59.620 47.826 5.94 5.94 44.91 3.51
2634 2751 3.628008 TCAGTGTGGACTACATACGGAT 58.372 45.455 0.00 0.00 44.91 4.18
2635 2752 3.076079 TCAGTGTGGACTACATACGGA 57.924 47.619 0.00 0.00 44.91 4.69
2636 2753 3.861276 TTCAGTGTGGACTACATACGG 57.139 47.619 0.00 0.00 44.91 4.02
2637 2754 5.651530 AGATTTCAGTGTGGACTACATACG 58.348 41.667 0.00 0.00 44.91 3.06
2638 2755 6.868622 AGAGATTTCAGTGTGGACTACATAC 58.131 40.000 0.00 0.00 42.24 2.39
2639 2756 8.589701 TTAGAGATTTCAGTGTGGACTACATA 57.410 34.615 0.00 0.00 42.24 2.29
2640 2757 7.482169 TTAGAGATTTCAGTGTGGACTACAT 57.518 36.000 0.00 0.00 42.24 2.29
2641 2758 6.911250 TTAGAGATTTCAGTGTGGACTACA 57.089 37.500 0.00 0.00 36.82 2.74
2642 2759 8.603242 TTTTTAGAGATTTCAGTGTGGACTAC 57.397 34.615 0.00 0.00 0.00 2.73
2643 2760 8.647796 TCTTTTTAGAGATTTCAGTGTGGACTA 58.352 33.333 0.00 0.00 0.00 2.59
2644 2761 7.442666 GTCTTTTTAGAGATTTCAGTGTGGACT 59.557 37.037 0.00 0.00 0.00 3.85
2645 2762 7.442666 AGTCTTTTTAGAGATTTCAGTGTGGAC 59.557 37.037 0.00 0.00 0.00 4.02
2646 2763 7.509546 AGTCTTTTTAGAGATTTCAGTGTGGA 58.490 34.615 0.00 0.00 0.00 4.02
2647 2764 7.736447 AGTCTTTTTAGAGATTTCAGTGTGG 57.264 36.000 0.00 0.00 0.00 4.17
2663 2780 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
2664 2781 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
2665 2782 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2666 2783 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2667 2784 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2668 2785 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2669 2786 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2670 2787 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2671 2788 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
2672 2789 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
2673 2790 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
2674 2791 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
2675 2792 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
2676 2793 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
2677 2794 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
2678 2795 3.749954 GCTATGTACTCCCTCCGTTCCTA 60.750 52.174 0.00 0.00 0.00 2.94
2679 2796 2.946785 CTATGTACTCCCTCCGTTCCT 58.053 52.381 0.00 0.00 0.00 3.36
2680 2797 1.340568 GCTATGTACTCCCTCCGTTCC 59.659 57.143 0.00 0.00 0.00 3.62
2681 2798 2.029623 TGCTATGTACTCCCTCCGTTC 58.970 52.381 0.00 0.00 0.00 3.95
2682 2799 2.032620 CTGCTATGTACTCCCTCCGTT 58.967 52.381 0.00 0.00 0.00 4.44
2683 2800 1.063867 ACTGCTATGTACTCCCTCCGT 60.064 52.381 0.00 0.00 0.00 4.69
2684 2801 1.338337 CACTGCTATGTACTCCCTCCG 59.662 57.143 0.00 0.00 0.00 4.63
2685 2802 2.389715 ACACTGCTATGTACTCCCTCC 58.610 52.381 0.00 0.00 0.00 4.30
2686 2803 4.276431 GTCTACACTGCTATGTACTCCCTC 59.724 50.000 0.00 0.00 33.85 4.30
2687 2804 4.208746 GTCTACACTGCTATGTACTCCCT 58.791 47.826 0.00 0.00 33.85 4.20
2688 2805 3.003482 CGTCTACACTGCTATGTACTCCC 59.997 52.174 0.00 0.00 33.85 4.30
2689 2806 3.626670 ACGTCTACACTGCTATGTACTCC 59.373 47.826 0.00 0.00 33.85 3.85
2690 2807 4.550447 CGACGTCTACACTGCTATGTACTC 60.550 50.000 14.70 0.00 33.85 2.59
2691 2808 3.309138 CGACGTCTACACTGCTATGTACT 59.691 47.826 14.70 0.00 33.85 2.73
2692 2809 3.308053 TCGACGTCTACACTGCTATGTAC 59.692 47.826 14.70 0.00 33.85 2.90
2693 2810 3.524541 TCGACGTCTACACTGCTATGTA 58.475 45.455 14.70 1.46 33.85 2.29
2694 2811 2.353323 TCGACGTCTACACTGCTATGT 58.647 47.619 14.70 0.00 36.56 2.29
2710 2827 2.095415 GGGGTGCATTAACTTGTTCGAC 60.095 50.000 0.00 0.00 0.00 4.20
2711 2828 2.156098 GGGGTGCATTAACTTGTTCGA 58.844 47.619 0.00 0.00 0.00 3.71
2712 2829 1.201414 GGGGGTGCATTAACTTGTTCG 59.799 52.381 0.00 0.00 0.00 3.95
2775 2935 6.727231 TCCTACAGTTCAAGGGTGTAAATAGA 59.273 38.462 0.00 0.00 33.40 1.98
2890 3059 3.941483 CGGGATTGATATAATGGGTGAGC 59.059 47.826 0.00 0.00 0.00 4.26
2904 3073 4.218635 GCTGACTATAGATCACGGGATTGA 59.781 45.833 0.00 0.00 32.67 2.57
2912 3081 6.842437 TTCCCTATGCTGACTATAGATCAC 57.158 41.667 6.78 3.30 31.26 3.06
2964 3135 5.107104 CGCGTGTAAGGATGTTATATTGCAT 60.107 40.000 0.00 0.00 0.00 3.96
3115 3352 0.971386 AAGCAGCCAGGGTTTGATTG 59.029 50.000 0.00 0.00 0.00 2.67
3191 3428 0.541392 CCACACCCTGCAGCATAGTA 59.459 55.000 8.66 0.00 0.00 1.82
3348 4401 4.708421 TGGTGGTGGATGACTAGTAGTTAC 59.292 45.833 3.85 0.00 0.00 2.50
3536 4688 6.408092 CCATACTATGGTTGTGCTTCTTCCTA 60.408 42.308 6.90 0.00 45.54 2.94
3601 4756 0.621082 TCAACCACACACAGTTCCCA 59.379 50.000 0.00 0.00 0.00 4.37
3680 4835 4.047125 CCCTTGGGTGCCCGTCAT 62.047 66.667 2.44 0.00 39.42 3.06
3744 4901 2.047844 GCTCCGCAGCAACTGAGA 60.048 61.111 0.00 0.00 46.06 3.27
3851 5008 2.356069 GGCAACCAAATCCTCGATCTTC 59.644 50.000 0.00 0.00 0.00 2.87
4786 6676 0.179020 CTGCCAGTTGGACCAAGTGA 60.179 55.000 34.36 19.53 44.73 3.41
5071 6979 4.082679 TGTTTGTCCAACTACCAACACAAC 60.083 41.667 0.00 0.00 36.21 3.32
5169 7081 9.743057 CAACAATACTCCAATTTTGAGTACAAA 57.257 29.630 14.00 0.00 43.10 2.83
5245 7193 1.947456 ACTCGCCCTTTGTTCAACTTC 59.053 47.619 0.00 0.00 0.00 3.01
5338 7347 6.971184 CCTGTTCAATTCAGCACAGAAATATC 59.029 38.462 0.00 0.00 39.25 1.63
5576 7592 1.066858 TCAGAATCGCAACTCCAGGAC 60.067 52.381 0.00 0.00 0.00 3.85
5615 7631 8.859090 TGAAGTCCAAAATCAAATTCTATGTGT 58.141 29.630 0.00 0.00 0.00 3.72
5642 7658 4.009675 TCAAATCTTTGTGGAATCGAGGG 58.990 43.478 2.82 0.00 39.18 4.30
5655 7683 6.349280 CGGGTTGTACATGTCATCAAATCTTT 60.349 38.462 0.00 0.00 0.00 2.52
5670 7698 2.046009 TTGCCAGCTCGGGTTGTACA 62.046 55.000 0.00 0.00 34.06 2.90
5713 7742 6.959639 AAACCATGGCCAACTACATATAAG 57.040 37.500 10.96 0.00 0.00 1.73
5948 8052 8.952278 TGCTTTCCGTTTTATTTGACTACATAT 58.048 29.630 0.00 0.00 0.00 1.78
6120 8263 1.218763 CATTCTGAGCATCCGCAGAG 58.781 55.000 0.00 0.00 46.27 3.35
6126 8269 2.225467 GGGCTAACATTCTGAGCATCC 58.775 52.381 0.00 0.00 37.98 3.51
6369 8518 0.108804 ACTACGCTCCCACGTTCATG 60.109 55.000 0.00 0.00 45.75 3.07
6459 8608 1.227002 GCGACCATCCTTCCTCGAC 60.227 63.158 0.00 0.00 0.00 4.20
6516 8665 5.827797 ACAATCCAAGACTTTGTACACACAT 59.172 36.000 0.00 0.00 33.76 3.21
6531 8687 8.001881 AGCTATATAGATACCGACAATCCAAG 57.998 38.462 14.16 0.00 0.00 3.61
6587 8749 6.318648 AGTGTGAACAGATAAAAGACAAGCAA 59.681 34.615 0.00 0.00 0.00 3.91
6590 8752 7.482654 TGAGTGTGAACAGATAAAAGACAAG 57.517 36.000 0.00 0.00 0.00 3.16
6623 8787 1.594518 CGTGGTGCGTTTTCTCTGTTG 60.595 52.381 0.00 0.00 35.54 3.33
6687 8851 6.527423 AGTACCAAACTGATTTAAACGGAGA 58.473 36.000 0.00 0.00 36.93 3.71
6688 8852 6.796705 AGTACCAAACTGATTTAAACGGAG 57.203 37.500 0.00 0.00 36.93 4.63
6689 8853 7.095102 GCTTAGTACCAAACTGATTTAAACGGA 60.095 37.037 0.00 0.00 39.39 4.69
6690 8854 7.019418 GCTTAGTACCAAACTGATTTAAACGG 58.981 38.462 0.00 0.00 39.39 4.44
6691 8855 7.803724 AGCTTAGTACCAAACTGATTTAAACG 58.196 34.615 0.00 0.00 39.39 3.60
6692 8856 9.608617 GAAGCTTAGTACCAAACTGATTTAAAC 57.391 33.333 0.00 0.00 39.39 2.01
6693 8857 8.789762 GGAAGCTTAGTACCAAACTGATTTAAA 58.210 33.333 0.00 0.00 39.39 1.52
6694 8858 7.940137 TGGAAGCTTAGTACCAAACTGATTTAA 59.060 33.333 0.00 0.00 39.39 1.52
6695 8859 7.455058 TGGAAGCTTAGTACCAAACTGATTTA 58.545 34.615 0.00 0.00 39.39 1.40
6696 8860 6.303839 TGGAAGCTTAGTACCAAACTGATTT 58.696 36.000 0.00 0.00 39.39 2.17
6697 8861 5.876357 TGGAAGCTTAGTACCAAACTGATT 58.124 37.500 0.00 0.00 39.39 2.57
6698 8862 5.499004 TGGAAGCTTAGTACCAAACTGAT 57.501 39.130 0.00 0.00 39.39 2.90
6699 8863 4.967084 TGGAAGCTTAGTACCAAACTGA 57.033 40.909 0.00 0.00 39.39 3.41
6700 8864 5.305585 TCTTGGAAGCTTAGTACCAAACTG 58.694 41.667 15.83 7.21 41.00 3.16
6701 8865 5.562298 TCTTGGAAGCTTAGTACCAAACT 57.438 39.130 15.83 0.00 41.00 2.66
6702 8866 7.148289 GGTTATCTTGGAAGCTTAGTACCAAAC 60.148 40.741 15.83 11.61 41.00 2.93
6703 8867 6.882678 GGTTATCTTGGAAGCTTAGTACCAAA 59.117 38.462 15.83 9.22 41.00 3.28
6704 8868 6.412214 GGTTATCTTGGAAGCTTAGTACCAA 58.588 40.000 14.65 14.65 39.60 3.67
6705 8869 5.104652 GGGTTATCTTGGAAGCTTAGTACCA 60.105 44.000 0.00 0.00 0.00 3.25
6706 8870 5.130643 AGGGTTATCTTGGAAGCTTAGTACC 59.869 44.000 0.00 0.00 0.00 3.34
6707 8871 6.236558 AGGGTTATCTTGGAAGCTTAGTAC 57.763 41.667 0.00 0.00 0.00 2.73
6708 8872 5.068723 CGAGGGTTATCTTGGAAGCTTAGTA 59.931 44.000 0.00 0.00 0.00 1.82
6709 8873 4.141914 CGAGGGTTATCTTGGAAGCTTAGT 60.142 45.833 0.00 0.00 0.00 2.24
6710 8874 4.372656 CGAGGGTTATCTTGGAAGCTTAG 58.627 47.826 0.00 0.00 0.00 2.18
6711 8875 3.431766 GCGAGGGTTATCTTGGAAGCTTA 60.432 47.826 0.00 0.00 0.00 3.09
6712 8876 2.681097 GCGAGGGTTATCTTGGAAGCTT 60.681 50.000 0.00 0.00 0.00 3.74
6713 8877 1.134371 GCGAGGGTTATCTTGGAAGCT 60.134 52.381 0.00 0.00 0.00 3.74
6714 8878 1.300481 GCGAGGGTTATCTTGGAAGC 58.700 55.000 0.00 0.00 0.00 3.86
6715 8879 2.280628 GTGCGAGGGTTATCTTGGAAG 58.719 52.381 0.00 0.00 0.00 3.46
6716 8880 1.404986 CGTGCGAGGGTTATCTTGGAA 60.405 52.381 0.00 0.00 0.00 3.53
6717 8881 0.174845 CGTGCGAGGGTTATCTTGGA 59.825 55.000 0.00 0.00 0.00 3.53
6779 8943 4.382291 TGCTTTTTCATTGAGCAAGCAAT 58.618 34.783 22.66 0.00 45.22 3.56
6852 9016 7.170320 TCTCGGCAATAAGGTAAATTACGAATC 59.830 37.037 0.00 0.00 30.02 2.52
6854 9018 6.256321 GTCTCGGCAATAAGGTAAATTACGAA 59.744 38.462 0.00 0.00 30.02 3.85
7068 9277 6.917477 CAGAGGATTCAAGAGTTAGAATCTCG 59.083 42.308 13.02 0.00 45.83 4.04
7142 9351 9.918630 GGCATTACTTCCGTAAGAAATAGTATA 57.081 33.333 0.00 0.00 38.87 1.47
7143 9352 8.426489 TGGCATTACTTCCGTAAGAAATAGTAT 58.574 33.333 0.00 0.00 38.87 2.12
7144 9353 7.784037 TGGCATTACTTCCGTAAGAAATAGTA 58.216 34.615 0.00 0.00 38.87 1.82
7145 9354 6.646267 TGGCATTACTTCCGTAAGAAATAGT 58.354 36.000 0.00 0.00 38.87 2.12
7146 9355 7.548196 TTGGCATTACTTCCGTAAGAAATAG 57.452 36.000 0.00 0.00 38.87 1.73
7193 9402 5.006358 ACTTTTCATGTACACGTCAACTGAC 59.994 40.000 0.00 0.00 41.47 3.51
7287 9496 5.529060 TGGCAAAAATTAAATTTGGAACGCT 59.471 32.000 15.04 0.00 38.04 5.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.