Multiple sequence alignment - TraesCS7D01G232600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G232600 chr7D 100.000 2749 0 0 1 2749 194128502 194131250 0.000000e+00 5077.0
1 TraesCS7D01G232600 chr7D 87.568 1649 123 37 732 2351 132764705 132763110 0.000000e+00 1834.0
2 TraesCS7D01G232600 chr7D 87.382 1585 123 31 799 2348 132830976 132829434 0.000000e+00 1748.0
3 TraesCS7D01G232600 chr7D 85.144 1629 139 49 748 2326 132135502 132137077 0.000000e+00 1572.0
4 TraesCS7D01G232600 chr7D 86.485 1465 109 34 863 2295 132748001 132749408 0.000000e+00 1526.0
5 TraesCS7D01G232600 chr7D 84.204 1665 143 39 732 2370 132740991 132742561 0.000000e+00 1507.0
6 TraesCS7D01G232600 chr7D 87.381 420 30 8 2339 2746 132749406 132749814 6.940000e-126 460.0
7 TraesCS7D01G232600 chr7D 92.347 196 13 2 419 612 161844379 161844574 7.500000e-71 278.0
8 TraesCS7D01G232600 chr7D 91.270 126 6 3 2392 2514 132762989 132762866 1.690000e-37 167.0
9 TraesCS7D01G232600 chr7D 88.119 101 7 2 630 730 132156904 132156999 6.220000e-22 115.0
10 TraesCS7D01G232600 chr7B 90.794 2205 104 45 630 2749 157808158 157810348 0.000000e+00 2856.0
11 TraesCS7D01G232600 chr7B 87.806 1632 109 50 660 2240 94118624 94117032 0.000000e+00 1829.0
12 TraesCS7D01G232600 chr7B 89.179 1303 96 23 842 2117 94186390 94185106 0.000000e+00 1583.0
13 TraesCS7D01G232600 chr7B 88.110 1270 90 21 630 1877 93650368 93651598 0.000000e+00 1452.0
14 TraesCS7D01G232600 chr7B 87.306 1158 90 28 758 1877 93571371 93572509 0.000000e+00 1271.0
15 TraesCS7D01G232600 chr7B 88.180 1066 71 33 660 1683 94051068 94050016 0.000000e+00 1219.0
16 TraesCS7D01G232600 chr7B 87.187 359 28 11 1 351 157807199 157807547 2.570000e-105 392.0
17 TraesCS7D01G232600 chr7B 85.522 297 27 10 2392 2687 93576526 93576807 2.070000e-76 296.0
18 TraesCS7D01G232600 chr7B 86.636 217 25 4 2136 2348 94049142 94048926 1.270000e-58 237.0
19 TraesCS7D01G232600 chr7B 81.967 122 15 3 2433 2548 94265545 94265665 2.250000e-16 97.1
20 TraesCS7D01G232600 chr7A 91.994 1449 74 17 1301 2749 203697298 203698704 0.000000e+00 1995.0
21 TraesCS7D01G232600 chr7A 85.668 1556 177 26 712 2232 131187723 131186179 0.000000e+00 1596.0
22 TraesCS7D01G232600 chr7A 87.500 1224 105 17 1026 2238 131109279 131108093 0.000000e+00 1369.0
23 TraesCS7D01G232600 chr7A 88.483 1094 83 13 1271 2348 210252629 210253695 0.000000e+00 1282.0
24 TraesCS7D01G232600 chr7A 87.029 902 78 19 630 1514 130891461 130892340 0.000000e+00 981.0
25 TraesCS7D01G232600 chr7A 89.136 718 37 24 612 1302 203694811 203695514 0.000000e+00 856.0
26 TraesCS7D01G232600 chr7A 84.845 772 52 23 1506 2268 130893568 130894283 0.000000e+00 717.0
27 TraesCS7D01G232600 chr7A 87.471 431 38 10 1 429 203694398 203694814 1.480000e-132 483.0
28 TraesCS7D01G232600 chr7A 85.093 322 33 10 1742 2058 131776721 131777032 5.710000e-82 315.0
29 TraesCS7D01G232600 chr7A 94.565 184 9 1 430 612 33354743 33354560 1.610000e-72 283.0
30 TraesCS7D01G232600 chr7A 84.528 265 37 3 2125 2387 130783821 130784083 2.720000e-65 259.0
31 TraesCS7D01G232600 chr7A 84.528 265 37 3 2125 2387 131120114 131119852 2.720000e-65 259.0
32 TraesCS7D01G232600 chr7A 90.643 171 15 1 2156 2326 130784831 130785000 2.750000e-55 226.0
33 TraesCS7D01G232600 chr7A 90.643 171 15 1 2156 2326 131119104 131118935 2.750000e-55 226.0
34 TraesCS7D01G232600 chr7A 91.200 125 8 2 2392 2513 131107887 131107763 1.690000e-37 167.0
35 TraesCS7D01G232600 chr5D 94.211 190 10 1 427 615 28162081 28162270 3.460000e-74 289.0
36 TraesCS7D01G232600 chr5D 93.194 191 12 1 427 616 449617429 449617239 2.080000e-71 279.0
37 TraesCS7D01G232600 chr5D 93.158 190 11 2 423 611 130661321 130661509 7.500000e-71 278.0
38 TraesCS7D01G232600 chr5D 93.583 187 11 1 427 612 370355696 370355882 7.500000e-71 278.0
39 TraesCS7D01G232600 chr3D 94.565 184 8 2 430 611 388314635 388314818 1.610000e-72 283.0
40 TraesCS7D01G232600 chr2D 93.299 194 10 3 423 614 389280418 389280226 1.610000e-72 283.0
41 TraesCS7D01G232600 chr6D 93.194 191 10 3 426 614 201987440 201987251 7.500000e-71 278.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G232600 chr7D 194128502 194131250 2748 False 5077.000000 5077 100.000000 1 2749 1 chr7D.!!$F5 2748
1 TraesCS7D01G232600 chr7D 132829434 132830976 1542 True 1748.000000 1748 87.382000 799 2348 1 chr7D.!!$R1 1549
2 TraesCS7D01G232600 chr7D 132135502 132137077 1575 False 1572.000000 1572 85.144000 748 2326 1 chr7D.!!$F1 1578
3 TraesCS7D01G232600 chr7D 132740991 132742561 1570 False 1507.000000 1507 84.204000 732 2370 1 chr7D.!!$F3 1638
4 TraesCS7D01G232600 chr7D 132762866 132764705 1839 True 1000.500000 1834 89.419000 732 2514 2 chr7D.!!$R2 1782
5 TraesCS7D01G232600 chr7D 132748001 132749814 1813 False 993.000000 1526 86.933000 863 2746 2 chr7D.!!$F6 1883
6 TraesCS7D01G232600 chr7B 94117032 94118624 1592 True 1829.000000 1829 87.806000 660 2240 1 chr7B.!!$R1 1580
7 TraesCS7D01G232600 chr7B 157807199 157810348 3149 False 1624.000000 2856 88.990500 1 2749 2 chr7B.!!$F5 2748
8 TraesCS7D01G232600 chr7B 94185106 94186390 1284 True 1583.000000 1583 89.179000 842 2117 1 chr7B.!!$R2 1275
9 TraesCS7D01G232600 chr7B 93650368 93651598 1230 False 1452.000000 1452 88.110000 630 1877 1 chr7B.!!$F3 1247
10 TraesCS7D01G232600 chr7B 93571371 93572509 1138 False 1271.000000 1271 87.306000 758 1877 1 chr7B.!!$F1 1119
11 TraesCS7D01G232600 chr7B 94048926 94051068 2142 True 728.000000 1219 87.408000 660 2348 2 chr7B.!!$R3 1688
12 TraesCS7D01G232600 chr7A 131186179 131187723 1544 True 1596.000000 1596 85.668000 712 2232 1 chr7A.!!$R2 1520
13 TraesCS7D01G232600 chr7A 210252629 210253695 1066 False 1282.000000 1282 88.483000 1271 2348 1 chr7A.!!$F2 1077
14 TraesCS7D01G232600 chr7A 203694398 203698704 4306 False 1111.333333 1995 89.533667 1 2749 3 chr7A.!!$F5 2748
15 TraesCS7D01G232600 chr7A 130891461 130894283 2822 False 849.000000 981 85.937000 630 2268 2 chr7A.!!$F4 1638
16 TraesCS7D01G232600 chr7A 131107763 131109279 1516 True 768.000000 1369 89.350000 1026 2513 2 chr7A.!!$R3 1487
17 TraesCS7D01G232600 chr7A 130783821 130785000 1179 False 242.500000 259 87.585500 2125 2387 2 chr7A.!!$F3 262
18 TraesCS7D01G232600 chr7A 131118935 131120114 1179 True 242.500000 259 87.585500 2125 2387 2 chr7A.!!$R4 262

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
553 1108 0.179001 CCCGTTTGGTTTCAGGGACT 60.179 55.0 0.0 0.0 44.7 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1882 6192 0.105964 CGACCAACTTCACCACCAGA 59.894 55.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 5.447279 CGCGCAACTTTTATGTCCTTCTTAT 60.447 40.000 8.75 0.00 0.00 1.73
126 127 0.674581 CGTGCATGTGATCTGGTGGT 60.675 55.000 0.00 0.00 0.00 4.16
165 166 5.123820 GCTGGAACTTGCTACAAATATGACA 59.876 40.000 0.00 0.00 0.00 3.58
170 171 7.067494 GGAACTTGCTACAAATATGACATTCCT 59.933 37.037 0.00 0.00 0.00 3.36
307 313 2.370849 TCGGATGGTTATTTAGGAGCCC 59.629 50.000 0.00 0.00 0.00 5.19
315 321 6.834107 TGGTTATTTAGGAGCCCTGTATAAC 58.166 40.000 18.94 18.94 38.72 1.89
316 322 6.387513 TGGTTATTTAGGAGCCCTGTATAACA 59.612 38.462 23.14 15.24 39.79 2.41
317 323 6.935208 GGTTATTTAGGAGCCCTGTATAACAG 59.065 42.308 23.14 0.00 45.53 3.16
318 324 7.419865 GGTTATTTAGGAGCCCTGTATAACAGT 60.420 40.741 23.14 0.00 44.50 3.55
319 325 8.645110 GTTATTTAGGAGCCCTGTATAACAGTA 58.355 37.037 20.42 0.00 44.50 2.74
320 326 7.873699 ATTTAGGAGCCCTGTATAACAGTAT 57.126 36.000 6.33 0.00 44.50 2.12
337 343 6.452494 ACAGTATAAGCTGAACGTGTAGAT 57.548 37.500 3.70 0.00 39.62 1.98
429 984 7.467811 GCTTCCATGTGAGTCTACCAAAATATG 60.468 40.741 0.00 0.00 0.00 1.78
440 995 3.625649 CCAAAATATGGGGGTGTTTGG 57.374 47.619 0.00 0.00 46.27 3.28
441 996 2.909662 CCAAAATATGGGGGTGTTTGGT 59.090 45.455 5.50 0.00 46.27 3.67
442 997 3.329225 CCAAAATATGGGGGTGTTTGGTT 59.671 43.478 5.50 0.00 46.27 3.67
443 998 4.564613 CCAAAATATGGGGGTGTTTGGTTC 60.565 45.833 5.50 0.00 46.27 3.62
444 999 3.551635 AATATGGGGGTGTTTGGTTCA 57.448 42.857 0.00 0.00 0.00 3.18
445 1000 2.595750 TATGGGGGTGTTTGGTTCAG 57.404 50.000 0.00 0.00 0.00 3.02
446 1001 0.856982 ATGGGGGTGTTTGGTTCAGA 59.143 50.000 0.00 0.00 0.00 3.27
447 1002 0.631753 TGGGGGTGTTTGGTTCAGAA 59.368 50.000 0.00 0.00 0.00 3.02
448 1003 1.328279 GGGGGTGTTTGGTTCAGAAG 58.672 55.000 0.00 0.00 0.00 2.85
449 1004 1.411074 GGGGGTGTTTGGTTCAGAAGT 60.411 52.381 0.00 0.00 0.00 3.01
450 1005 1.954382 GGGGTGTTTGGTTCAGAAGTC 59.046 52.381 0.00 0.00 0.00 3.01
451 1006 1.954382 GGGTGTTTGGTTCAGAAGTCC 59.046 52.381 0.00 0.00 0.00 3.85
452 1007 2.422945 GGGTGTTTGGTTCAGAAGTCCT 60.423 50.000 0.00 0.00 0.00 3.85
453 1008 3.181448 GGGTGTTTGGTTCAGAAGTCCTA 60.181 47.826 0.00 0.00 0.00 2.94
454 1009 4.065789 GGTGTTTGGTTCAGAAGTCCTAG 58.934 47.826 0.00 0.00 0.00 3.02
455 1010 4.065789 GTGTTTGGTTCAGAAGTCCTAGG 58.934 47.826 0.82 0.82 0.00 3.02
456 1011 3.971305 TGTTTGGTTCAGAAGTCCTAGGA 59.029 43.478 7.62 7.62 0.00 2.94
457 1012 4.202326 TGTTTGGTTCAGAAGTCCTAGGAC 60.202 45.833 31.29 31.29 44.86 3.85
471 1026 6.837471 GTCCTAGGACTTTTTCTAGTCTCA 57.163 41.667 31.12 0.00 43.26 3.27
472 1027 7.229581 GTCCTAGGACTTTTTCTAGTCTCAA 57.770 40.000 31.12 0.00 43.26 3.02
473 1028 7.317390 GTCCTAGGACTTTTTCTAGTCTCAAG 58.683 42.308 31.12 0.00 43.26 3.02
474 1029 6.437793 TCCTAGGACTTTTTCTAGTCTCAAGG 59.562 42.308 7.62 0.00 43.26 3.61
475 1030 6.437793 CCTAGGACTTTTTCTAGTCTCAAGGA 59.562 42.308 1.05 0.00 43.26 3.36
476 1031 6.104146 AGGACTTTTTCTAGTCTCAAGGAC 57.896 41.667 0.00 0.00 43.26 3.85
517 1072 9.022884 TCTCTAGTAAAGTCTTTTTCTAGTCCC 57.977 37.037 22.38 0.79 41.40 4.46
518 1073 8.953223 TCTAGTAAAGTCTTTTTCTAGTCCCT 57.047 34.615 22.38 5.82 41.40 4.20
519 1074 8.804204 TCTAGTAAAGTCTTTTTCTAGTCCCTG 58.196 37.037 22.38 9.23 41.40 4.45
520 1075 7.376335 AGTAAAGTCTTTTTCTAGTCCCTGT 57.624 36.000 2.51 0.00 0.00 4.00
521 1076 8.488308 AGTAAAGTCTTTTTCTAGTCCCTGTA 57.512 34.615 2.51 0.00 0.00 2.74
522 1077 8.586744 AGTAAAGTCTTTTTCTAGTCCCTGTAG 58.413 37.037 2.51 0.00 0.00 2.74
523 1078 7.613551 AAAGTCTTTTTCTAGTCCCTGTAGA 57.386 36.000 0.00 0.00 0.00 2.59
524 1079 7.613551 AAGTCTTTTTCTAGTCCCTGTAGAA 57.386 36.000 0.00 0.00 35.21 2.10
525 1080 7.613551 AGTCTTTTTCTAGTCCCTGTAGAAA 57.386 36.000 1.96 1.96 42.24 2.52
531 1086 5.997384 TCTAGTCCCTGTAGAAAAAGTCC 57.003 43.478 0.00 0.00 0.00 3.85
532 1087 4.776308 TCTAGTCCCTGTAGAAAAAGTCCC 59.224 45.833 0.00 0.00 0.00 4.46
533 1088 3.323775 AGTCCCTGTAGAAAAAGTCCCA 58.676 45.455 0.00 0.00 0.00 4.37
534 1089 3.072622 AGTCCCTGTAGAAAAAGTCCCAC 59.927 47.826 0.00 0.00 0.00 4.61
535 1090 2.374170 TCCCTGTAGAAAAAGTCCCACC 59.626 50.000 0.00 0.00 0.00 4.61
536 1091 2.554564 CCCTGTAGAAAAAGTCCCACCC 60.555 54.545 0.00 0.00 0.00 4.61
537 1092 2.423577 CTGTAGAAAAAGTCCCACCCG 58.576 52.381 0.00 0.00 0.00 5.28
538 1093 1.770061 TGTAGAAAAAGTCCCACCCGT 59.230 47.619 0.00 0.00 0.00 5.28
539 1094 2.173143 TGTAGAAAAAGTCCCACCCGTT 59.827 45.455 0.00 0.00 0.00 4.44
540 1095 2.447408 AGAAAAAGTCCCACCCGTTT 57.553 45.000 0.00 0.00 0.00 3.60
541 1096 2.028876 AGAAAAAGTCCCACCCGTTTG 58.971 47.619 0.00 0.00 0.00 2.93
542 1097 1.067974 GAAAAAGTCCCACCCGTTTGG 59.932 52.381 0.00 0.00 41.37 3.28
551 1106 4.911901 CCCGTTTGGTTTCAGGGA 57.088 55.556 0.00 0.00 44.70 4.20
552 1107 2.337361 CCCGTTTGGTTTCAGGGAC 58.663 57.895 0.00 0.00 44.70 4.46
553 1108 0.179001 CCCGTTTGGTTTCAGGGACT 60.179 55.000 0.00 0.00 44.70 3.85
554 1109 1.687563 CCGTTTGGTTTCAGGGACTT 58.312 50.000 0.00 0.00 34.60 3.01
555 1110 2.028876 CCGTTTGGTTTCAGGGACTTT 58.971 47.619 0.00 0.00 34.60 2.66
556 1111 2.429250 CCGTTTGGTTTCAGGGACTTTT 59.571 45.455 0.00 0.00 34.60 2.27
557 1112 3.118920 CCGTTTGGTTTCAGGGACTTTTT 60.119 43.478 0.00 0.00 34.60 1.94
558 1113 4.098196 CCGTTTGGTTTCAGGGACTTTTTA 59.902 41.667 0.00 0.00 34.60 1.52
559 1114 5.394333 CCGTTTGGTTTCAGGGACTTTTTAA 60.394 40.000 0.00 0.00 34.60 1.52
560 1115 5.746721 CGTTTGGTTTCAGGGACTTTTTAAG 59.253 40.000 0.00 0.00 34.60 1.85
561 1116 5.862678 TTGGTTTCAGGGACTTTTTAAGG 57.137 39.130 0.00 0.00 34.60 2.69
562 1117 5.132043 TGGTTTCAGGGACTTTTTAAGGA 57.868 39.130 0.00 0.00 34.60 3.36
563 1118 4.891168 TGGTTTCAGGGACTTTTTAAGGAC 59.109 41.667 0.00 0.00 34.60 3.85
564 1119 5.138276 GGTTTCAGGGACTTTTTAAGGACT 58.862 41.667 0.00 0.00 34.60 3.85
565 1120 5.597182 GGTTTCAGGGACTTTTTAAGGACTT 59.403 40.000 0.00 0.00 34.60 3.01
566 1121 6.097839 GGTTTCAGGGACTTTTTAAGGACTTT 59.902 38.462 0.00 0.00 34.60 2.66
567 1122 7.364408 GGTTTCAGGGACTTTTTAAGGACTTTT 60.364 37.037 0.00 0.00 34.60 2.27
568 1123 7.727578 TTCAGGGACTTTTTAAGGACTTTTT 57.272 32.000 0.00 0.00 34.60 1.94
569 1124 7.342769 TCAGGGACTTTTTAAGGACTTTTTC 57.657 36.000 0.00 0.00 34.60 2.29
570 1125 7.123383 TCAGGGACTTTTTAAGGACTTTTTCT 58.877 34.615 0.00 0.00 34.60 2.52
571 1126 8.276477 TCAGGGACTTTTTAAGGACTTTTTCTA 58.724 33.333 0.00 0.00 34.60 2.10
572 1127 8.568794 CAGGGACTTTTTAAGGACTTTTTCTAG 58.431 37.037 0.00 0.00 34.60 2.43
573 1128 8.280084 AGGGACTTTTTAAGGACTTTTTCTAGT 58.720 33.333 0.00 0.00 27.25 2.57
574 1129 8.566260 GGGACTTTTTAAGGACTTTTTCTAGTC 58.434 37.037 0.00 0.00 43.05 2.59
575 1130 9.339850 GGACTTTTTAAGGACTTTTTCTAGTCT 57.660 33.333 0.00 0.00 43.26 3.24
577 1132 9.339850 ACTTTTTAAGGACTTTTTCTAGTCTCC 57.660 33.333 0.00 0.00 43.26 3.71
578 1133 7.958053 TTTTAAGGACTTTTTCTAGTCTCCG 57.042 36.000 0.00 0.00 43.26 4.63
579 1134 4.538746 AAGGACTTTTTCTAGTCTCCGG 57.461 45.455 0.00 0.00 43.26 5.14
580 1135 2.832733 AGGACTTTTTCTAGTCTCCGGG 59.167 50.000 0.00 0.00 43.26 5.73
581 1136 2.830321 GGACTTTTTCTAGTCTCCGGGA 59.170 50.000 0.00 0.00 43.26 5.14
582 1137 3.368220 GGACTTTTTCTAGTCTCCGGGAC 60.368 52.174 13.42 13.42 43.26 4.46
603 1158 5.828747 GACTAAAAAGTCCCTGAACCAAAC 58.171 41.667 0.00 0.00 32.97 2.93
604 1159 5.265989 ACTAAAAAGTCCCTGAACCAAACA 58.734 37.500 0.00 0.00 0.00 2.83
605 1160 4.465632 AAAAAGTCCCTGAACCAAACAC 57.534 40.909 0.00 0.00 0.00 3.32
606 1161 2.067365 AAGTCCCTGAACCAAACACC 57.933 50.000 0.00 0.00 0.00 4.16
607 1162 0.179029 AGTCCCTGAACCAAACACCG 60.179 55.000 0.00 0.00 0.00 4.94
608 1163 1.527380 TCCCTGAACCAAACACCGC 60.527 57.895 0.00 0.00 0.00 5.68
609 1164 2.561037 CCCTGAACCAAACACCGCC 61.561 63.158 0.00 0.00 0.00 6.13
610 1165 1.528309 CCTGAACCAAACACCGCCT 60.528 57.895 0.00 0.00 0.00 5.52
611 1166 0.250553 CCTGAACCAAACACCGCCTA 60.251 55.000 0.00 0.00 0.00 3.93
612 1167 1.613255 CCTGAACCAAACACCGCCTAT 60.613 52.381 0.00 0.00 0.00 2.57
613 1168 2.355310 CCTGAACCAAACACCGCCTATA 60.355 50.000 0.00 0.00 0.00 1.31
614 1169 3.541632 CTGAACCAAACACCGCCTATAT 58.458 45.455 0.00 0.00 0.00 0.86
615 1170 3.275143 TGAACCAAACACCGCCTATATG 58.725 45.455 0.00 0.00 0.00 1.78
643 1198 0.240945 CATCAAGTCCACCAAACGGC 59.759 55.000 0.00 0.00 0.00 5.68
658 1213 4.229876 CAAACGGCAGGAATTCTTTCTTC 58.770 43.478 5.23 0.00 32.16 2.87
693 1248 6.313658 GTCCAACTTTGAAAAGCAAATCAGTT 59.686 34.615 2.69 0.00 44.90 3.16
701 1256 0.593128 AGCAAATCAGTTGTGTCCGC 59.407 50.000 0.00 0.00 39.63 5.54
786 1344 2.921121 CACGAATCGTAAAGCTGTAGCA 59.079 45.455 8.35 0.00 40.26 3.49
796 1354 3.749665 AAGCTGTAGCATCCAGATCTC 57.250 47.619 6.65 0.00 45.16 2.75
828 1386 2.187946 GAGCCCACCCGATCTGTG 59.812 66.667 5.51 5.51 0.00 3.66
971 1560 2.168313 GCAGAAGAGAGAGAGGGAAAGG 59.832 54.545 0.00 0.00 0.00 3.11
979 1609 3.596046 AGAGAGAGGGAAAGGAGAGAGAA 59.404 47.826 0.00 0.00 0.00 2.87
985 1631 4.757692 AGGGAAAGGAGAGAGAAAGAGAA 58.242 43.478 0.00 0.00 0.00 2.87
1006 1685 2.387757 AGAAGAGAGAGACCATGGCTC 58.612 52.381 21.70 21.70 0.00 4.70
1159 1850 2.471607 GCTACGACGACGACGACA 59.528 61.111 25.15 11.69 42.66 4.35
1198 1895 1.144936 CTCGTCATCCCCAGCTTCC 59.855 63.158 0.00 0.00 0.00 3.46
1258 1961 1.396815 CGTTTCTTTGCGTTCGTCTCC 60.397 52.381 0.00 0.00 0.00 3.71
1302 3808 3.141398 TCAGCGTTCTGATGAGCTTTTT 58.859 40.909 0.00 0.00 43.95 1.94
1759 6024 2.843113 AGGTCGAGTAGGTAGTGGTAGT 59.157 50.000 0.00 0.00 0.00 2.73
1760 6025 2.941720 GGTCGAGTAGGTAGTGGTAGTG 59.058 54.545 0.00 0.00 0.00 2.74
1761 6026 2.941720 GTCGAGTAGGTAGTGGTAGTGG 59.058 54.545 0.00 0.00 0.00 4.00
1762 6027 2.573462 TCGAGTAGGTAGTGGTAGTGGT 59.427 50.000 0.00 0.00 0.00 4.16
1763 6028 3.774766 TCGAGTAGGTAGTGGTAGTGGTA 59.225 47.826 0.00 0.00 0.00 3.25
1764 6029 4.125703 CGAGTAGGTAGTGGTAGTGGTAG 58.874 52.174 0.00 0.00 0.00 3.18
1783 6082 2.124024 GCTCATGCAGGATGGCCA 60.124 61.111 8.56 8.56 39.41 5.36
1874 6184 3.150848 TGATCGTCTTGGATCGAGTTG 57.849 47.619 0.00 0.00 44.61 3.16
1875 6185 2.159240 TGATCGTCTTGGATCGAGTTGG 60.159 50.000 0.00 0.00 44.61 3.77
1876 6186 1.254026 TCGTCTTGGATCGAGTTGGT 58.746 50.000 0.00 0.00 0.00 3.67
1877 6187 2.439409 TCGTCTTGGATCGAGTTGGTA 58.561 47.619 0.00 0.00 0.00 3.25
1878 6188 2.422479 TCGTCTTGGATCGAGTTGGTAG 59.578 50.000 0.00 0.00 0.00 3.18
1879 6189 2.163815 CGTCTTGGATCGAGTTGGTAGT 59.836 50.000 0.00 0.00 0.00 2.73
1880 6190 3.512680 GTCTTGGATCGAGTTGGTAGTG 58.487 50.000 0.00 0.00 0.00 2.74
1881 6191 2.496070 TCTTGGATCGAGTTGGTAGTGG 59.504 50.000 0.00 0.00 0.00 4.00
1882 6192 1.933021 TGGATCGAGTTGGTAGTGGT 58.067 50.000 0.00 0.00 0.00 4.16
1883 6193 1.822990 TGGATCGAGTTGGTAGTGGTC 59.177 52.381 0.00 0.00 0.00 4.02
1884 6194 2.100989 GGATCGAGTTGGTAGTGGTCT 58.899 52.381 0.00 0.00 0.00 3.85
1885 6195 2.159226 GGATCGAGTTGGTAGTGGTCTG 60.159 54.545 0.00 0.00 0.00 3.51
1886 6196 1.254026 TCGAGTTGGTAGTGGTCTGG 58.746 55.000 0.00 0.00 0.00 3.86
1887 6197 0.966920 CGAGTTGGTAGTGGTCTGGT 59.033 55.000 0.00 0.00 0.00 4.00
1933 6262 7.121168 TCTGTTAATTTCCTCTAGTTTGGCATG 59.879 37.037 0.00 0.00 0.00 4.06
1934 6263 6.945435 TGTTAATTTCCTCTAGTTTGGCATGA 59.055 34.615 0.00 0.00 0.00 3.07
1935 6264 7.121168 TGTTAATTTCCTCTAGTTTGGCATGAG 59.879 37.037 0.00 0.00 0.00 2.90
1936 6265 4.908601 TTTCCTCTAGTTTGGCATGAGA 57.091 40.909 0.00 0.00 0.00 3.27
1990 6319 7.015487 TGGTCATGAAATTCTGTTGATTTCCTT 59.985 33.333 0.00 0.00 34.40 3.36
1993 6322 8.809066 TCATGAAATTCTGTTGATTTCCTTGAT 58.191 29.630 0.00 0.00 34.40 2.57
1996 6325 9.263538 TGAAATTCTGTTGATTTCCTTGATTTG 57.736 29.630 7.00 0.00 34.40 2.32
1998 6327 5.138125 TCTGTTGATTTCCTTGATTTGGC 57.862 39.130 0.00 0.00 0.00 4.52
1999 6328 4.588106 TCTGTTGATTTCCTTGATTTGGCA 59.412 37.500 0.00 0.00 0.00 4.92
2000 6329 5.246656 TCTGTTGATTTCCTTGATTTGGCAT 59.753 36.000 0.00 0.00 0.00 4.40
2001 6330 6.436847 TCTGTTGATTTCCTTGATTTGGCATA 59.563 34.615 0.00 0.00 0.00 3.14
2002 6331 7.124599 TCTGTTGATTTCCTTGATTTGGCATAT 59.875 33.333 0.00 0.00 0.00 1.78
2003 6332 7.042950 TGTTGATTTCCTTGATTTGGCATATG 58.957 34.615 0.00 0.00 0.00 1.78
2004 6333 7.093421 TGTTGATTTCCTTGATTTGGCATATGA 60.093 33.333 6.97 0.00 0.00 2.15
2005 6334 7.606135 TGATTTCCTTGATTTGGCATATGAT 57.394 32.000 6.97 0.00 0.00 2.45
2006 6335 7.438564 TGATTTCCTTGATTTGGCATATGATG 58.561 34.615 6.97 0.00 0.00 3.07
2007 6336 7.288158 TGATTTCCTTGATTTGGCATATGATGA 59.712 33.333 6.97 0.00 0.00 2.92
2009 6338 6.395426 TCCTTGATTTGGCATATGATGAAC 57.605 37.500 6.97 0.00 0.00 3.18
2010 6339 6.131264 TCCTTGATTTGGCATATGATGAACT 58.869 36.000 6.97 0.00 0.00 3.01
2011 6340 6.040054 TCCTTGATTTGGCATATGATGAACTG 59.960 38.462 6.97 0.00 0.00 3.16
2012 6341 6.040054 CCTTGATTTGGCATATGATGAACTGA 59.960 38.462 6.97 0.00 0.00 3.41
2013 6342 7.255836 CCTTGATTTGGCATATGATGAACTGAT 60.256 37.037 6.97 0.00 0.00 2.90
2016 6345 7.923878 TGATTTGGCATATGATGAACTGATTTG 59.076 33.333 6.97 0.00 0.00 2.32
2018 6347 6.778834 TGGCATATGATGAACTGATTTGTT 57.221 33.333 6.97 0.00 0.00 2.83
2020 6349 5.981315 GGCATATGATGAACTGATTTGTTGG 59.019 40.000 6.97 0.00 0.00 3.77
2021 6350 6.406177 GGCATATGATGAACTGATTTGTTGGT 60.406 38.462 6.97 0.00 0.00 3.67
2024 6353 6.653526 ATGATGAACTGATTTGTTGGTGAA 57.346 33.333 0.00 0.00 0.00 3.18
2025 6354 6.653526 TGATGAACTGATTTGTTGGTGAAT 57.346 33.333 0.00 0.00 0.00 2.57
2026 6355 7.053316 TGATGAACTGATTTGTTGGTGAATT 57.947 32.000 0.00 0.00 0.00 2.17
2029 6358 6.047870 TGAACTGATTTGTTGGTGAATTTGG 58.952 36.000 0.00 0.00 0.00 3.28
2030 6359 5.612725 ACTGATTTGTTGGTGAATTTGGT 57.387 34.783 0.00 0.00 0.00 3.67
2032 6361 5.128499 ACTGATTTGTTGGTGAATTTGGTCA 59.872 36.000 0.00 0.00 0.00 4.02
2033 6362 6.172136 TGATTTGTTGGTGAATTTGGTCAT 57.828 33.333 0.00 0.00 0.00 3.06
2034 6363 5.990386 TGATTTGTTGGTGAATTTGGTCATG 59.010 36.000 0.00 0.00 0.00 3.07
2035 6364 3.383620 TGTTGGTGAATTTGGTCATGC 57.616 42.857 0.00 0.00 0.00 4.06
2036 6365 2.697229 TGTTGGTGAATTTGGTCATGCA 59.303 40.909 0.00 0.00 0.00 3.96
2037 6366 3.133542 TGTTGGTGAATTTGGTCATGCAA 59.866 39.130 0.00 0.00 0.00 4.08
2039 6368 2.288948 TGGTGAATTTGGTCATGCAAGC 60.289 45.455 0.00 0.00 0.00 4.01
2041 6370 3.555586 GGTGAATTTGGTCATGCAAGCTT 60.556 43.478 0.00 0.00 0.00 3.74
2044 6373 3.756933 ATTTGGTCATGCAAGCTTGTT 57.243 38.095 26.55 12.71 0.00 2.83
2045 6374 2.512485 TTGGTCATGCAAGCTTGTTG 57.488 45.000 26.55 22.53 0.00 3.33
2048 6377 2.229543 TGGTCATGCAAGCTTGTTGATC 59.770 45.455 26.55 25.96 0.00 2.92
2050 6379 3.427233 GGTCATGCAAGCTTGTTGATCTC 60.427 47.826 26.55 16.47 0.00 2.75
2051 6380 2.751259 TCATGCAAGCTTGTTGATCTCC 59.249 45.455 26.55 8.72 0.00 3.71
2053 6382 2.867624 TGCAAGCTTGTTGATCTCCTT 58.132 42.857 26.55 0.00 0.00 3.36
2055 6384 4.397420 TGCAAGCTTGTTGATCTCCTTAA 58.603 39.130 26.55 0.00 0.00 1.85
2057 6386 4.457257 GCAAGCTTGTTGATCTCCTTAAGT 59.543 41.667 26.55 0.00 0.00 2.24
2058 6387 5.618640 GCAAGCTTGTTGATCTCCTTAAGTG 60.619 44.000 26.55 0.00 0.00 3.16
2059 6388 5.234466 AGCTTGTTGATCTCCTTAAGTGT 57.766 39.130 0.97 0.00 0.00 3.55
2061 6390 4.092091 GCTTGTTGATCTCCTTAAGTGTCG 59.908 45.833 0.97 0.00 0.00 4.35
2064 6393 4.038763 TGTTGATCTCCTTAAGTGTCGTGT 59.961 41.667 0.97 0.00 0.00 4.49
2065 6394 4.174411 TGATCTCCTTAAGTGTCGTGTG 57.826 45.455 0.97 0.00 0.00 3.82
2066 6395 2.433868 TCTCCTTAAGTGTCGTGTGC 57.566 50.000 0.97 0.00 0.00 4.57
2068 6397 2.061773 CTCCTTAAGTGTCGTGTGCTG 58.938 52.381 0.97 0.00 0.00 4.41
2069 6398 1.148310 CCTTAAGTGTCGTGTGCTGG 58.852 55.000 0.97 0.00 0.00 4.85
2070 6399 1.270094 CCTTAAGTGTCGTGTGCTGGA 60.270 52.381 0.97 0.00 0.00 3.86
2074 6403 1.037493 AGTGTCGTGTGCTGGACTAA 58.963 50.000 0.00 0.00 34.31 2.24
2076 6405 2.037251 AGTGTCGTGTGCTGGACTAATT 59.963 45.455 0.00 0.00 34.31 1.40
2078 6407 3.991773 GTGTCGTGTGCTGGACTAATTTA 59.008 43.478 0.00 0.00 34.31 1.40
2079 6408 4.091509 GTGTCGTGTGCTGGACTAATTTAG 59.908 45.833 0.00 1.79 34.31 1.85
2080 6409 4.021807 TGTCGTGTGCTGGACTAATTTAGA 60.022 41.667 10.39 0.00 34.31 2.10
2081 6410 4.563184 GTCGTGTGCTGGACTAATTTAGAG 59.437 45.833 10.39 0.00 0.00 2.43
2083 6412 4.620803 CGTGTGCTGGACTAATTTAGAGGT 60.621 45.833 10.39 0.00 0.00 3.85
2084 6413 4.631813 GTGTGCTGGACTAATTTAGAGGTG 59.368 45.833 10.39 0.09 0.00 4.00
2085 6414 4.530553 TGTGCTGGACTAATTTAGAGGTGA 59.469 41.667 10.39 0.00 0.00 4.02
2086 6415 5.012664 TGTGCTGGACTAATTTAGAGGTGAA 59.987 40.000 10.39 0.00 0.00 3.18
2087 6416 5.938125 GTGCTGGACTAATTTAGAGGTGAAA 59.062 40.000 10.39 0.00 0.00 2.69
2088 6417 6.599638 GTGCTGGACTAATTTAGAGGTGAAAT 59.400 38.462 10.39 0.00 0.00 2.17
2092 6421 7.466804 TGGACTAATTTAGAGGTGAAATTGGT 58.533 34.615 10.39 8.89 45.24 3.67
2096 6425 8.960591 ACTAATTTAGAGGTGAAATTGGTCATG 58.039 33.333 10.39 0.00 41.40 3.07
2098 6427 8.421249 AATTTAGAGGTGAAATTGGTCATGAA 57.579 30.769 0.00 0.00 35.64 2.57
2099 6428 6.817765 TTAGAGGTGAAATTGGTCATGAAC 57.182 37.500 2.98 2.98 0.00 3.18
2101 6430 5.388654 AGAGGTGAAATTGGTCATGAACTT 58.611 37.500 12.94 0.00 0.00 2.66
2104 6433 5.363580 AGGTGAAATTGGTCATGAACTTTGT 59.636 36.000 12.94 0.00 0.00 2.83
2108 6437 7.439056 GTGAAATTGGTCATGAACTTTGTTGAT 59.561 33.333 12.94 0.00 0.00 2.57
2109 6438 7.986320 TGAAATTGGTCATGAACTTTGTTGATT 59.014 29.630 12.94 0.00 0.00 2.57
2110 6439 7.718272 AATTGGTCATGAACTTTGTTGATTG 57.282 32.000 12.94 0.00 0.00 2.67
2113 6442 5.593909 TGGTCATGAACTTTGTTGATTGTCT 59.406 36.000 12.94 0.00 0.00 3.41
2114 6443 6.145535 GGTCATGAACTTTGTTGATTGTCTC 58.854 40.000 2.64 0.00 0.00 3.36
2115 6444 6.238731 GGTCATGAACTTTGTTGATTGTCTCA 60.239 38.462 2.64 0.00 0.00 3.27
2118 6447 8.415553 TCATGAACTTTGTTGATTGTCTCAAAT 58.584 29.630 0.00 0.00 45.27 2.32
2119 6448 9.037737 CATGAACTTTGTTGATTGTCTCAAATT 57.962 29.630 0.00 0.00 45.27 1.82
2120 6449 9.603921 ATGAACTTTGTTGATTGTCTCAAATTT 57.396 25.926 0.00 0.00 45.27 1.82
2121 6450 8.871862 TGAACTTTGTTGATTGTCTCAAATTTG 58.128 29.630 12.15 12.15 45.27 2.32
2123 6452 6.258507 ACTTTGTTGATTGTCTCAAATTTGGC 59.741 34.615 17.90 9.31 45.27 4.52
2126 6455 4.524316 TGATTGTCTCAAATTTGGCCTG 57.476 40.909 17.90 6.69 0.00 4.85
2128 6457 4.773674 TGATTGTCTCAAATTTGGCCTGAT 59.226 37.500 17.90 7.49 0.00 2.90
2144 6498 3.243002 GCCTGATGAGCTGCTTTGATTAC 60.243 47.826 2.53 0.00 0.00 1.89
2182 6554 4.801516 GCCTGTCTATCTTTTCTCGTTCTC 59.198 45.833 0.00 0.00 0.00 2.87
2189 6562 3.502920 TCTTTTCTCGTTCTCGATCTGC 58.497 45.455 0.00 0.00 45.21 4.26
2250 6625 7.765695 TGCCTACTCTCTGAAAAATTGATTT 57.234 32.000 0.00 0.00 0.00 2.17
2257 6636 9.183368 ACTCTCTGAAAAATTGATTTATCTCCC 57.817 33.333 0.00 0.00 0.00 4.30
2258 6637 9.406113 CTCTCTGAAAAATTGATTTATCTCCCT 57.594 33.333 0.00 0.00 0.00 4.20
2352 6807 4.799564 TGTGTGCTTTTCCTTGAGTTTT 57.200 36.364 0.00 0.00 0.00 2.43
2380 6836 7.074653 TCTTGTAAGAACTGTAAATGGTCCT 57.925 36.000 0.00 0.00 30.73 3.85
2405 6887 5.482163 TTGTAGTTGTCACATGAGATGGA 57.518 39.130 0.00 0.00 33.60 3.41
2434 6916 5.527951 TGTTTGTTTATGTCCTGCTTCGTTA 59.472 36.000 0.00 0.00 0.00 3.18
2477 6981 2.009681 AACTGATTTGGTGGTTCCCC 57.990 50.000 0.00 0.00 34.77 4.81
2536 7044 6.108015 TGTAAGAACAGTAACCGTTTCAGTT 58.892 36.000 0.00 0.00 0.00 3.16
2549 7057 4.319261 CCGTTTCAGTTTGTAGTTGTAGCC 60.319 45.833 0.00 0.00 0.00 3.93
2562 7070 2.203800 TGTAGCCTTATCGTGCGAAG 57.796 50.000 0.00 0.00 0.00 3.79
2563 7071 1.475280 TGTAGCCTTATCGTGCGAAGT 59.525 47.619 0.00 0.00 0.00 3.01
2564 7072 1.852895 GTAGCCTTATCGTGCGAAGTG 59.147 52.381 0.00 0.00 0.00 3.16
2565 7073 1.084370 AGCCTTATCGTGCGAAGTGC 61.084 55.000 0.00 0.09 46.70 4.40
2673 7190 3.988379 TGCTGACAAATTGACCAGAAC 57.012 42.857 18.43 7.24 0.00 3.01
2724 7250 7.147976 GCATACAAAGAAAACTTCTGTTCCAT 58.852 34.615 0.00 0.00 40.59 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 3.483788 TAACCAAGCACAGCCGCCA 62.484 57.895 0.00 0.00 0.00 5.69
64 65 5.781210 TGCCACATCACATTTGAAACTTA 57.219 34.783 0.00 0.00 34.61 2.24
75 76 1.307355 CGATGCCTTGCCACATCACA 61.307 55.000 0.00 0.00 42.28 3.58
192 193 8.925700 CCCACAAAATCTAATGCTAACTTTTTC 58.074 33.333 0.00 0.00 0.00 2.29
315 321 7.757097 AAATCTACACGTTCAGCTTATACTG 57.243 36.000 0.00 0.00 39.12 2.74
316 322 9.865321 TTAAAATCTACACGTTCAGCTTATACT 57.135 29.630 0.00 0.00 0.00 2.12
395 950 1.462283 CTCACATGGAAGCAACAGACG 59.538 52.381 0.00 0.00 0.00 4.18
429 984 1.328279 CTTCTGAACCAAACACCCCC 58.672 55.000 0.00 0.00 0.00 5.40
430 985 1.954382 GACTTCTGAACCAAACACCCC 59.046 52.381 0.00 0.00 0.00 4.95
431 986 1.954382 GGACTTCTGAACCAAACACCC 59.046 52.381 0.00 0.00 0.00 4.61
432 987 2.932261 AGGACTTCTGAACCAAACACC 58.068 47.619 0.58 0.00 0.00 4.16
433 988 4.065789 CCTAGGACTTCTGAACCAAACAC 58.934 47.826 1.05 0.00 0.00 3.32
434 989 3.971305 TCCTAGGACTTCTGAACCAAACA 59.029 43.478 7.62 0.00 0.00 2.83
435 990 4.316645 GTCCTAGGACTTCTGAACCAAAC 58.683 47.826 31.12 3.26 41.57 2.93
436 991 4.618920 GTCCTAGGACTTCTGAACCAAA 57.381 45.455 31.12 0.00 41.57 3.28
448 1003 6.837471 TGAGACTAGAAAAAGTCCTAGGAC 57.163 41.667 31.29 31.29 45.86 3.85
449 1004 6.437793 CCTTGAGACTAGAAAAAGTCCTAGGA 59.562 42.308 7.62 7.62 45.86 2.94
450 1005 6.437793 TCCTTGAGACTAGAAAAAGTCCTAGG 59.562 42.308 0.82 0.82 45.86 3.02
451 1006 7.317390 GTCCTTGAGACTAGAAAAAGTCCTAG 58.683 42.308 0.00 0.00 45.86 3.02
452 1007 7.229581 GTCCTTGAGACTAGAAAAAGTCCTA 57.770 40.000 0.00 0.00 45.86 2.94
453 1008 6.104146 GTCCTTGAGACTAGAAAAAGTCCT 57.896 41.667 0.00 0.00 45.86 3.85
491 1046 9.022884 GGGACTAGAAAAAGACTTTACTAGAGA 57.977 37.037 28.84 9.93 35.60 3.10
492 1047 9.027202 AGGGACTAGAAAAAGACTTTACTAGAG 57.973 37.037 28.84 17.58 36.02 2.43
493 1048 8.804204 CAGGGACTAGAAAAAGACTTTACTAGA 58.196 37.037 28.84 10.63 36.02 2.43
494 1049 8.586744 ACAGGGACTAGAAAAAGACTTTACTAG 58.413 37.037 24.68 24.68 36.02 2.57
495 1050 8.488308 ACAGGGACTAGAAAAAGACTTTACTA 57.512 34.615 0.00 7.54 36.02 1.82
496 1051 7.376335 ACAGGGACTAGAAAAAGACTTTACT 57.624 36.000 0.00 6.80 36.02 2.24
497 1052 8.583296 TCTACAGGGACTAGAAAAAGACTTTAC 58.417 37.037 0.00 0.00 36.02 2.01
498 1053 8.716674 TCTACAGGGACTAGAAAAAGACTTTA 57.283 34.615 0.00 0.00 36.02 1.85
499 1054 7.613551 TCTACAGGGACTAGAAAAAGACTTT 57.386 36.000 0.00 0.00 36.02 2.66
500 1055 7.613551 TTCTACAGGGACTAGAAAAAGACTT 57.386 36.000 0.00 0.00 36.02 3.01
501 1056 7.613551 TTTCTACAGGGACTAGAAAAAGACT 57.386 36.000 0.00 0.00 37.31 3.24
502 1057 8.672823 TTTTTCTACAGGGACTAGAAAAAGAC 57.327 34.615 16.61 0.00 46.05 3.01
506 1061 7.222161 GGACTTTTTCTACAGGGACTAGAAAA 58.778 38.462 0.00 8.58 43.60 2.29
507 1062 6.239800 GGGACTTTTTCTACAGGGACTAGAAA 60.240 42.308 0.00 0.00 38.08 2.52
508 1063 5.247792 GGGACTTTTTCTACAGGGACTAGAA 59.752 44.000 0.00 0.00 36.02 2.10
509 1064 4.776308 GGGACTTTTTCTACAGGGACTAGA 59.224 45.833 0.00 0.00 36.02 2.43
510 1065 4.530946 TGGGACTTTTTCTACAGGGACTAG 59.469 45.833 0.00 0.00 36.02 2.57
511 1066 4.285260 GTGGGACTTTTTCTACAGGGACTA 59.715 45.833 0.00 0.00 36.02 2.59
512 1067 3.072622 GTGGGACTTTTTCTACAGGGACT 59.927 47.826 0.00 0.00 43.88 3.85
513 1068 3.409570 GTGGGACTTTTTCTACAGGGAC 58.590 50.000 0.00 0.00 0.00 4.46
514 1069 2.374170 GGTGGGACTTTTTCTACAGGGA 59.626 50.000 0.00 0.00 0.00 4.20
515 1070 2.554564 GGGTGGGACTTTTTCTACAGGG 60.555 54.545 0.00 0.00 0.00 4.45
516 1071 2.791655 GGGTGGGACTTTTTCTACAGG 58.208 52.381 0.00 0.00 0.00 4.00
517 1072 2.224450 ACGGGTGGGACTTTTTCTACAG 60.224 50.000 0.00 0.00 0.00 2.74
518 1073 1.770061 ACGGGTGGGACTTTTTCTACA 59.230 47.619 0.00 0.00 0.00 2.74
519 1074 2.556144 ACGGGTGGGACTTTTTCTAC 57.444 50.000 0.00 0.00 0.00 2.59
520 1075 3.215975 CAAACGGGTGGGACTTTTTCTA 58.784 45.455 0.00 0.00 0.00 2.10
521 1076 2.028876 CAAACGGGTGGGACTTTTTCT 58.971 47.619 0.00 0.00 0.00 2.52
522 1077 1.067974 CCAAACGGGTGGGACTTTTTC 59.932 52.381 0.00 0.00 34.77 2.29
523 1078 1.116308 CCAAACGGGTGGGACTTTTT 58.884 50.000 0.00 0.00 34.77 1.94
524 1079 2.815384 CCAAACGGGTGGGACTTTT 58.185 52.632 0.00 0.00 34.77 2.27
525 1080 4.591038 CCAAACGGGTGGGACTTT 57.409 55.556 0.00 0.00 34.77 2.66
534 1089 0.179001 AGTCCCTGAAACCAAACGGG 60.179 55.000 0.00 0.00 44.81 5.28
535 1090 1.687563 AAGTCCCTGAAACCAAACGG 58.312 50.000 0.00 0.00 0.00 4.44
536 1091 3.793797 AAAAGTCCCTGAAACCAAACG 57.206 42.857 0.00 0.00 0.00 3.60
537 1092 6.046593 CCTTAAAAAGTCCCTGAAACCAAAC 58.953 40.000 0.00 0.00 0.00 2.93
538 1093 5.958987 TCCTTAAAAAGTCCCTGAAACCAAA 59.041 36.000 0.00 0.00 0.00 3.28
539 1094 5.361571 GTCCTTAAAAAGTCCCTGAAACCAA 59.638 40.000 0.00 0.00 0.00 3.67
540 1095 4.891168 GTCCTTAAAAAGTCCCTGAAACCA 59.109 41.667 0.00 0.00 0.00 3.67
541 1096 5.138276 AGTCCTTAAAAAGTCCCTGAAACC 58.862 41.667 0.00 0.00 0.00 3.27
542 1097 6.710597 AAGTCCTTAAAAAGTCCCTGAAAC 57.289 37.500 0.00 0.00 0.00 2.78
543 1098 7.727578 AAAAGTCCTTAAAAAGTCCCTGAAA 57.272 32.000 0.00 0.00 0.00 2.69
544 1099 7.618117 AGAAAAAGTCCTTAAAAAGTCCCTGAA 59.382 33.333 0.00 0.00 0.00 3.02
545 1100 7.123383 AGAAAAAGTCCTTAAAAAGTCCCTGA 58.877 34.615 0.00 0.00 0.00 3.86
546 1101 7.348080 AGAAAAAGTCCTTAAAAAGTCCCTG 57.652 36.000 0.00 0.00 0.00 4.45
547 1102 8.280084 ACTAGAAAAAGTCCTTAAAAAGTCCCT 58.720 33.333 0.00 0.00 0.00 4.20
548 1103 8.461249 ACTAGAAAAAGTCCTTAAAAAGTCCC 57.539 34.615 0.00 0.00 0.00 4.46
549 1104 9.339850 AGACTAGAAAAAGTCCTTAAAAAGTCC 57.660 33.333 0.00 0.00 45.86 3.85
551 1106 9.339850 GGAGACTAGAAAAAGTCCTTAAAAAGT 57.660 33.333 0.00 0.00 45.86 2.66
552 1107 8.496751 CGGAGACTAGAAAAAGTCCTTAAAAAG 58.503 37.037 0.00 0.00 45.86 2.27
553 1108 7.443272 CCGGAGACTAGAAAAAGTCCTTAAAAA 59.557 37.037 0.00 0.00 45.86 1.94
554 1109 6.932960 CCGGAGACTAGAAAAAGTCCTTAAAA 59.067 38.462 0.00 0.00 45.86 1.52
555 1110 6.461640 CCGGAGACTAGAAAAAGTCCTTAAA 58.538 40.000 0.00 0.00 45.86 1.52
556 1111 5.046807 CCCGGAGACTAGAAAAAGTCCTTAA 60.047 44.000 0.73 0.00 45.86 1.85
557 1112 4.465305 CCCGGAGACTAGAAAAAGTCCTTA 59.535 45.833 0.73 0.00 45.86 2.69
558 1113 3.261137 CCCGGAGACTAGAAAAAGTCCTT 59.739 47.826 0.73 0.00 45.86 3.36
559 1114 2.832733 CCCGGAGACTAGAAAAAGTCCT 59.167 50.000 0.73 0.00 45.86 3.85
560 1115 2.830321 TCCCGGAGACTAGAAAAAGTCC 59.170 50.000 0.73 0.00 45.86 3.85
561 1116 3.847542 GTCCCGGAGACTAGAAAAAGTC 58.152 50.000 0.73 0.00 45.20 3.01
562 1117 3.957591 GTCCCGGAGACTAGAAAAAGT 57.042 47.619 0.73 0.00 42.69 2.66
580 1135 5.358725 TGTTTGGTTCAGGGACTTTTTAGTC 59.641 40.000 0.00 0.00 34.60 2.59
581 1136 5.126545 GTGTTTGGTTCAGGGACTTTTTAGT 59.873 40.000 0.00 0.00 34.60 2.24
582 1137 5.451381 GGTGTTTGGTTCAGGGACTTTTTAG 60.451 44.000 0.00 0.00 34.60 1.85
583 1138 4.403113 GGTGTTTGGTTCAGGGACTTTTTA 59.597 41.667 0.00 0.00 34.60 1.52
584 1139 3.196901 GGTGTTTGGTTCAGGGACTTTTT 59.803 43.478 0.00 0.00 34.60 1.94
585 1140 2.764010 GGTGTTTGGTTCAGGGACTTTT 59.236 45.455 0.00 0.00 34.60 2.27
586 1141 2.384828 GGTGTTTGGTTCAGGGACTTT 58.615 47.619 0.00 0.00 34.60 2.66
587 1142 1.749286 CGGTGTTTGGTTCAGGGACTT 60.749 52.381 0.00 0.00 34.60 3.01
588 1143 0.179029 CGGTGTTTGGTTCAGGGACT 60.179 55.000 0.00 0.00 43.88 3.85
589 1144 1.792118 GCGGTGTTTGGTTCAGGGAC 61.792 60.000 0.00 0.00 0.00 4.46
590 1145 1.527380 GCGGTGTTTGGTTCAGGGA 60.527 57.895 0.00 0.00 0.00 4.20
591 1146 2.561037 GGCGGTGTTTGGTTCAGGG 61.561 63.158 0.00 0.00 0.00 4.45
592 1147 0.250553 TAGGCGGTGTTTGGTTCAGG 60.251 55.000 0.00 0.00 0.00 3.86
593 1148 1.821216 ATAGGCGGTGTTTGGTTCAG 58.179 50.000 0.00 0.00 0.00 3.02
594 1149 3.055021 TCATATAGGCGGTGTTTGGTTCA 60.055 43.478 0.00 0.00 0.00 3.18
595 1150 3.311596 GTCATATAGGCGGTGTTTGGTTC 59.688 47.826 0.00 0.00 0.00 3.62
596 1151 3.275999 GTCATATAGGCGGTGTTTGGTT 58.724 45.455 0.00 0.00 0.00 3.67
597 1152 2.420967 GGTCATATAGGCGGTGTTTGGT 60.421 50.000 0.00 0.00 0.00 3.67
598 1153 2.218603 GGTCATATAGGCGGTGTTTGG 58.781 52.381 0.00 0.00 0.00 3.28
599 1154 1.864711 CGGTCATATAGGCGGTGTTTG 59.135 52.381 0.00 0.00 0.00 2.93
600 1155 1.758280 TCGGTCATATAGGCGGTGTTT 59.242 47.619 0.00 0.00 0.00 2.83
601 1156 1.068127 GTCGGTCATATAGGCGGTGTT 59.932 52.381 0.00 0.00 0.00 3.32
602 1157 0.672342 GTCGGTCATATAGGCGGTGT 59.328 55.000 0.00 0.00 0.00 4.16
603 1158 0.386858 CGTCGGTCATATAGGCGGTG 60.387 60.000 0.00 0.00 0.00 4.94
604 1159 0.535780 TCGTCGGTCATATAGGCGGT 60.536 55.000 0.00 0.00 0.00 5.68
605 1160 0.109873 GTCGTCGGTCATATAGGCGG 60.110 60.000 0.00 0.00 0.00 6.13
606 1161 0.589708 TGTCGTCGGTCATATAGGCG 59.410 55.000 0.00 0.00 0.00 5.52
607 1162 2.228103 TGATGTCGTCGGTCATATAGGC 59.772 50.000 0.00 0.00 0.00 3.93
608 1163 4.023107 ACTTGATGTCGTCGGTCATATAGG 60.023 45.833 0.00 0.00 0.00 2.57
609 1164 5.109662 ACTTGATGTCGTCGGTCATATAG 57.890 43.478 0.00 2.53 0.00 1.31
610 1165 4.023450 GGACTTGATGTCGTCGGTCATATA 60.023 45.833 15.30 0.00 46.24 0.86
611 1166 3.243434 GGACTTGATGTCGTCGGTCATAT 60.243 47.826 15.30 0.00 46.24 1.78
612 1167 2.098607 GGACTTGATGTCGTCGGTCATA 59.901 50.000 15.30 0.00 46.24 2.15
613 1168 1.135083 GGACTTGATGTCGTCGGTCAT 60.135 52.381 15.30 0.00 46.24 3.06
614 1169 0.242825 GGACTTGATGTCGTCGGTCA 59.757 55.000 15.30 0.00 46.24 4.02
615 1170 0.242825 TGGACTTGATGTCGTCGGTC 59.757 55.000 8.57 8.57 46.24 4.79
643 1198 5.523369 ACTTTTGCGAAGAAAGAATTCCTG 58.477 37.500 0.65 0.00 37.50 3.86
658 1213 4.545823 TCAAAGTTGGACTACTTTTGCG 57.454 40.909 8.74 0.68 43.85 4.85
693 1248 0.108992 CTAAAGCTACGGCGGACACA 60.109 55.000 13.24 0.00 44.37 3.72
701 1256 4.631813 ACTTTTGATCTGCTAAAGCTACGG 59.368 41.667 3.26 0.00 41.20 4.02
796 1354 2.103934 CTCTCGAGCCTTCCAGCG 59.896 66.667 7.81 0.00 38.01 5.18
828 1386 2.180432 ACGGGTTTAGAAGGTTCTGC 57.820 50.000 2.32 0.00 38.19 4.26
971 1560 7.607991 TCTCTCTCTTCTTTCTCTTTCTCTCTC 59.392 40.741 0.00 0.00 0.00 3.20
979 1609 5.187576 CCATGGTCTCTCTCTTCTTTCTCTT 59.812 44.000 2.57 0.00 0.00 2.85
985 1631 2.765699 GAGCCATGGTCTCTCTCTTCTT 59.234 50.000 21.85 0.00 0.00 2.52
1040 1731 2.982130 CACCGGACTTGAGGAGGG 59.018 66.667 9.46 0.00 0.00 4.30
1258 1961 1.067060 TGACTCACGGTGTTGAGACTG 59.933 52.381 8.17 0.00 45.19 3.51
1302 3808 3.599343 CAGAATCAACATCAAGGACGGA 58.401 45.455 0.00 0.00 0.00 4.69
1526 5280 2.455674 TCACCAGGATGTTCTTGTCG 57.544 50.000 0.00 0.00 0.00 4.35
1783 6082 1.672682 TCTCTCACACTCTCGCGCT 60.673 57.895 5.56 0.00 0.00 5.92
1874 6184 1.002087 CTTCACCACCAGACCACTACC 59.998 57.143 0.00 0.00 0.00 3.18
1875 6185 1.692519 ACTTCACCACCAGACCACTAC 59.307 52.381 0.00 0.00 0.00 2.73
1876 6186 2.097110 ACTTCACCACCAGACCACTA 57.903 50.000 0.00 0.00 0.00 2.74
1877 6187 1.134098 CAACTTCACCACCAGACCACT 60.134 52.381 0.00 0.00 0.00 4.00
1878 6188 1.308998 CAACTTCACCACCAGACCAC 58.691 55.000 0.00 0.00 0.00 4.16
1879 6189 0.182537 CCAACTTCACCACCAGACCA 59.817 55.000 0.00 0.00 0.00 4.02
1880 6190 0.182775 ACCAACTTCACCACCAGACC 59.817 55.000 0.00 0.00 0.00 3.85
1881 6191 1.594331 GACCAACTTCACCACCAGAC 58.406 55.000 0.00 0.00 0.00 3.51
1882 6192 0.105964 CGACCAACTTCACCACCAGA 59.894 55.000 0.00 0.00 0.00 3.86
1883 6193 1.507141 GCGACCAACTTCACCACCAG 61.507 60.000 0.00 0.00 0.00 4.00
1884 6194 1.525077 GCGACCAACTTCACCACCA 60.525 57.895 0.00 0.00 0.00 4.17
1885 6195 2.604174 CGCGACCAACTTCACCACC 61.604 63.158 0.00 0.00 0.00 4.61
1886 6196 1.155424 TTCGCGACCAACTTCACCAC 61.155 55.000 9.15 0.00 0.00 4.16
1887 6197 1.144276 TTCGCGACCAACTTCACCA 59.856 52.632 9.15 0.00 0.00 4.17
1933 6262 6.431234 ACCACCAAAGTAAGTTCATCATTCTC 59.569 38.462 0.00 0.00 0.00 2.87
1934 6263 6.207417 CACCACCAAAGTAAGTTCATCATTCT 59.793 38.462 0.00 0.00 0.00 2.40
1935 6264 6.206634 TCACCACCAAAGTAAGTTCATCATTC 59.793 38.462 0.00 0.00 0.00 2.67
1936 6265 6.068010 TCACCACCAAAGTAAGTTCATCATT 58.932 36.000 0.00 0.00 0.00 2.57
1990 6319 7.591421 AATCAGTTCATCATATGCCAAATCA 57.409 32.000 0.00 0.00 0.00 2.57
1993 6322 7.172868 ACAAATCAGTTCATCATATGCCAAA 57.827 32.000 0.00 0.00 0.00 3.28
1996 6325 5.981315 CCAACAAATCAGTTCATCATATGCC 59.019 40.000 0.00 0.00 0.00 4.40
1998 6327 7.764331 TCACCAACAAATCAGTTCATCATATG 58.236 34.615 0.00 0.00 0.00 1.78
1999 6328 7.943079 TCACCAACAAATCAGTTCATCATAT 57.057 32.000 0.00 0.00 0.00 1.78
2000 6329 7.757941 TTCACCAACAAATCAGTTCATCATA 57.242 32.000 0.00 0.00 0.00 2.15
2001 6330 6.653526 TTCACCAACAAATCAGTTCATCAT 57.346 33.333 0.00 0.00 0.00 2.45
2002 6331 6.653526 ATTCACCAACAAATCAGTTCATCA 57.346 33.333 0.00 0.00 0.00 3.07
2003 6332 7.095523 CCAAATTCACCAACAAATCAGTTCATC 60.096 37.037 0.00 0.00 0.00 2.92
2004 6333 6.707161 CCAAATTCACCAACAAATCAGTTCAT 59.293 34.615 0.00 0.00 0.00 2.57
2005 6334 6.047870 CCAAATTCACCAACAAATCAGTTCA 58.952 36.000 0.00 0.00 0.00 3.18
2006 6335 6.048509 ACCAAATTCACCAACAAATCAGTTC 58.951 36.000 0.00 0.00 0.00 3.01
2007 6336 5.988287 ACCAAATTCACCAACAAATCAGTT 58.012 33.333 0.00 0.00 0.00 3.16
2009 6338 5.599732 TGACCAAATTCACCAACAAATCAG 58.400 37.500 0.00 0.00 0.00 2.90
2010 6339 5.604758 TGACCAAATTCACCAACAAATCA 57.395 34.783 0.00 0.00 0.00 2.57
2011 6340 5.106987 GCATGACCAAATTCACCAACAAATC 60.107 40.000 0.00 0.00 0.00 2.17
2012 6341 4.756135 GCATGACCAAATTCACCAACAAAT 59.244 37.500 0.00 0.00 0.00 2.32
2013 6342 4.125703 GCATGACCAAATTCACCAACAAA 58.874 39.130 0.00 0.00 0.00 2.83
2016 6345 3.383620 TGCATGACCAAATTCACCAAC 57.616 42.857 0.00 0.00 0.00 3.77
2018 6347 2.288948 GCTTGCATGACCAAATTCACCA 60.289 45.455 3.33 0.00 0.00 4.17
2020 6349 3.308438 AGCTTGCATGACCAAATTCAC 57.692 42.857 3.33 0.00 0.00 3.18
2021 6350 3.069872 ACAAGCTTGCATGACCAAATTCA 59.930 39.130 26.27 0.00 0.00 2.57
2024 6353 3.069872 TCAACAAGCTTGCATGACCAAAT 59.930 39.130 26.27 0.00 0.00 2.32
2025 6354 2.429971 TCAACAAGCTTGCATGACCAAA 59.570 40.909 26.27 6.71 0.00 3.28
2026 6355 2.030371 TCAACAAGCTTGCATGACCAA 58.970 42.857 26.27 7.05 0.00 3.67
2029 6358 3.427233 GGAGATCAACAAGCTTGCATGAC 60.427 47.826 28.01 22.21 32.47 3.06
2030 6359 2.751259 GGAGATCAACAAGCTTGCATGA 59.249 45.455 27.76 27.76 33.64 3.07
2032 6361 3.083122 AGGAGATCAACAAGCTTGCAT 57.917 42.857 26.27 15.29 0.00 3.96
2033 6362 2.574006 AGGAGATCAACAAGCTTGCA 57.426 45.000 26.27 10.95 0.00 4.08
2034 6363 4.457257 ACTTAAGGAGATCAACAAGCTTGC 59.543 41.667 26.27 9.57 0.00 4.01
2035 6364 5.471456 ACACTTAAGGAGATCAACAAGCTTG 59.529 40.000 24.84 24.84 0.00 4.01
2036 6365 5.625150 ACACTTAAGGAGATCAACAAGCTT 58.375 37.500 7.53 0.00 0.00 3.74
2037 6366 5.234466 ACACTTAAGGAGATCAACAAGCT 57.766 39.130 7.53 0.00 0.00 3.74
2039 6368 5.119279 CACGACACTTAAGGAGATCAACAAG 59.881 44.000 7.53 0.00 0.00 3.16
2041 6370 4.038763 ACACGACACTTAAGGAGATCAACA 59.961 41.667 7.53 0.00 0.00 3.33
2044 6373 3.614150 GCACACGACACTTAAGGAGATCA 60.614 47.826 7.53 0.00 0.00 2.92
2045 6374 2.924290 GCACACGACACTTAAGGAGATC 59.076 50.000 7.53 0.00 0.00 2.75
2048 6377 2.061773 CAGCACACGACACTTAAGGAG 58.938 52.381 7.53 1.46 0.00 3.69
2050 6379 1.148310 CCAGCACACGACACTTAAGG 58.852 55.000 7.53 0.00 0.00 2.69
2051 6380 1.792949 GTCCAGCACACGACACTTAAG 59.207 52.381 0.00 0.00 0.00 1.85
2053 6382 1.037493 AGTCCAGCACACGACACTTA 58.963 50.000 0.00 0.00 0.00 2.24
2055 6384 1.037493 TTAGTCCAGCACACGACACT 58.963 50.000 0.00 0.00 0.00 3.55
2057 6386 2.831685 AATTAGTCCAGCACACGACA 57.168 45.000 0.00 0.00 0.00 4.35
2058 6387 4.491676 TCTAAATTAGTCCAGCACACGAC 58.508 43.478 0.00 0.00 0.00 4.34
2059 6388 4.381612 CCTCTAAATTAGTCCAGCACACGA 60.382 45.833 0.00 0.00 0.00 4.35
2061 6390 4.631813 CACCTCTAAATTAGTCCAGCACAC 59.368 45.833 0.00 0.00 0.00 3.82
2064 6393 5.755409 TTCACCTCTAAATTAGTCCAGCA 57.245 39.130 0.00 0.00 0.00 4.41
2065 6394 7.415653 CCAATTTCACCTCTAAATTAGTCCAGC 60.416 40.741 0.00 0.00 35.35 4.85
2066 6395 7.611855 ACCAATTTCACCTCTAAATTAGTCCAG 59.388 37.037 0.00 0.00 35.35 3.86
2068 6397 7.610305 TGACCAATTTCACCTCTAAATTAGTCC 59.390 37.037 13.44 2.40 40.83 3.85
2069 6398 8.561738 TGACCAATTTCACCTCTAAATTAGTC 57.438 34.615 10.76 10.76 41.37 2.59
2070 6399 8.960591 CATGACCAATTTCACCTCTAAATTAGT 58.039 33.333 0.00 0.00 35.35 2.24
2074 6403 7.671398 AGTTCATGACCAATTTCACCTCTAAAT 59.329 33.333 0.00 0.00 0.00 1.40
2076 6405 6.542821 AGTTCATGACCAATTTCACCTCTAA 58.457 36.000 0.00 0.00 0.00 2.10
2078 6407 4.990526 AGTTCATGACCAATTTCACCTCT 58.009 39.130 0.00 0.00 0.00 3.69
2079 6408 5.712152 AAGTTCATGACCAATTTCACCTC 57.288 39.130 0.00 0.00 0.00 3.85
2080 6409 5.363580 ACAAAGTTCATGACCAATTTCACCT 59.636 36.000 0.00 0.00 0.00 4.00
2081 6410 5.600696 ACAAAGTTCATGACCAATTTCACC 58.399 37.500 0.00 0.00 0.00 4.02
2083 6412 6.871844 TCAACAAAGTTCATGACCAATTTCA 58.128 32.000 0.00 0.00 0.00 2.69
2084 6413 7.951530 ATCAACAAAGTTCATGACCAATTTC 57.048 32.000 0.00 0.00 0.00 2.17
2085 6414 7.769970 ACAATCAACAAAGTTCATGACCAATTT 59.230 29.630 0.00 0.00 0.00 1.82
2086 6415 7.274447 ACAATCAACAAAGTTCATGACCAATT 58.726 30.769 0.00 0.00 0.00 2.32
2087 6416 6.819284 ACAATCAACAAAGTTCATGACCAAT 58.181 32.000 0.00 0.00 0.00 3.16
2088 6417 6.096705 AGACAATCAACAAAGTTCATGACCAA 59.903 34.615 0.00 0.00 0.00 3.67
2092 6421 6.940831 TGAGACAATCAACAAAGTTCATGA 57.059 33.333 0.00 0.00 34.02 3.07
2104 6433 4.588106 TCAGGCCAAATTTGAGACAATCAA 59.412 37.500 19.86 0.00 46.31 2.57
2108 6437 4.151121 TCATCAGGCCAAATTTGAGACAA 58.849 39.130 19.86 5.18 0.00 3.18
2109 6438 3.760151 CTCATCAGGCCAAATTTGAGACA 59.240 43.478 19.86 0.00 34.00 3.41
2110 6439 3.428589 GCTCATCAGGCCAAATTTGAGAC 60.429 47.826 19.86 11.58 34.00 3.36
2113 6442 2.494471 CAGCTCATCAGGCCAAATTTGA 59.506 45.455 19.86 0.00 0.00 2.69
2114 6443 2.888594 CAGCTCATCAGGCCAAATTTG 58.111 47.619 11.40 11.40 0.00 2.32
2115 6444 1.206371 GCAGCTCATCAGGCCAAATTT 59.794 47.619 5.01 0.00 0.00 1.82
2118 6447 0.251474 AAGCAGCTCATCAGGCCAAA 60.251 50.000 5.01 0.00 0.00 3.28
2119 6448 0.251474 AAAGCAGCTCATCAGGCCAA 60.251 50.000 5.01 0.00 0.00 4.52
2120 6449 0.963856 CAAAGCAGCTCATCAGGCCA 60.964 55.000 5.01 0.00 0.00 5.36
2121 6450 0.679002 TCAAAGCAGCTCATCAGGCC 60.679 55.000 0.00 0.00 0.00 5.19
2123 6452 3.314635 GGTAATCAAAGCAGCTCATCAGG 59.685 47.826 0.00 0.00 0.00 3.86
2126 6455 6.683974 TTAAGGTAATCAAAGCAGCTCATC 57.316 37.500 0.00 0.00 0.00 2.92
2128 6457 4.396166 GCTTAAGGTAATCAAAGCAGCTCA 59.604 41.667 4.29 0.00 43.00 4.26
2144 6498 1.751924 ACAGGCGAGACTAGCTTAAGG 59.248 52.381 7.53 0.00 34.52 2.69
2250 6625 3.427573 TGACGTCAAACTCAGGGAGATA 58.572 45.455 17.62 0.00 33.32 1.98
2257 6636 3.032017 ACTCCATGACGTCAAACTCAG 57.968 47.619 24.13 15.56 0.00 3.35
2258 6637 3.130633 CAACTCCATGACGTCAAACTCA 58.869 45.455 24.13 0.00 0.00 3.41
2352 6807 9.485206 GACCATTTACAGTTCTTACAAGAAGTA 57.515 33.333 10.87 5.93 44.63 2.24
2376 6832 4.814234 TCATGTGACAACTACAAACAGGAC 59.186 41.667 0.00 0.00 0.00 3.85
2380 6836 5.469760 CCATCTCATGTGACAACTACAAACA 59.530 40.000 0.00 0.00 0.00 2.83
2405 6887 4.097286 AGCAGGACATAAACAAACAAACGT 59.903 37.500 0.00 0.00 0.00 3.99
2477 6981 4.734854 CAGAGGACAAACACAAAACATTCG 59.265 41.667 0.00 0.00 0.00 3.34
2536 7044 4.178540 GCACGATAAGGCTACAACTACAA 58.821 43.478 0.00 0.00 0.00 2.41
2549 7057 0.989164 TTCGCACTTCGCACGATAAG 59.011 50.000 0.00 0.00 42.60 1.73
2562 7070 1.939974 TCTCATATGGCTGTTCGCAC 58.060 50.000 2.13 0.00 41.67 5.34
2563 7071 2.486918 CATCTCATATGGCTGTTCGCA 58.513 47.619 2.13 0.00 41.67 5.10
2564 7072 1.802960 CCATCTCATATGGCTGTTCGC 59.197 52.381 2.13 0.00 38.13 4.70
2565 7073 2.420642 CCCATCTCATATGGCTGTTCG 58.579 52.381 2.13 0.00 37.85 3.95
2566 7074 2.157738 GCCCATCTCATATGGCTGTTC 58.842 52.381 2.13 0.00 40.77 3.18
2567 7075 1.496001 TGCCCATCTCATATGGCTGTT 59.504 47.619 2.13 0.00 44.32 3.16
2568 7076 1.142936 TGCCCATCTCATATGGCTGT 58.857 50.000 2.13 0.00 44.32 4.40
2645 7162 8.801299 TCTGGTCAATTTGTCAGCAATAAAATA 58.199 29.630 13.61 0.00 34.18 1.40
2724 7250 7.433537 TGGGGTAAAACTGAAAACCAATTAA 57.566 32.000 0.00 0.00 33.46 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.