Multiple sequence alignment - TraesCS7D01G232000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G232000 chr7D 100.000 4138 0 0 1 4138 193207835 193211972 0.000000e+00 7642.0
1 TraesCS7D01G232000 chr7D 100.000 1345 0 0 4552 5896 193212386 193213730 0.000000e+00 2484.0
2 TraesCS7D01G232000 chr7D 79.310 116 16 8 5153 5264 504134050 504133939 2.280000e-09 75.0
3 TraesCS7D01G232000 chr7D 85.185 54 4 2 5577 5630 396979817 396979768 1.100000e-02 52.8
4 TraesCS7D01G232000 chr7B 90.169 3906 219 72 326 4138 156680482 156684315 0.000000e+00 4933.0
5 TraesCS7D01G232000 chr7B 90.569 668 53 8 4552 5214 156684403 156685065 0.000000e+00 876.0
6 TraesCS7D01G232000 chr7B 84.050 558 62 14 5304 5850 156685206 156685747 4.080000e-141 512.0
7 TraesCS7D01G232000 chr7B 82.320 181 29 3 2 181 156678980 156679158 2.850000e-33 154.0
8 TraesCS7D01G232000 chr7B 79.255 188 23 10 177 348 156680248 156680435 3.730000e-22 117.0
9 TraesCS7D01G232000 chr7A 92.117 3349 131 65 853 4138 202736502 202739780 0.000000e+00 4599.0
10 TraesCS7D01G232000 chr7A 89.970 668 53 8 4552 5214 202739878 202740536 0.000000e+00 850.0
11 TraesCS7D01G232000 chr7A 85.115 477 37 13 5231 5688 202740631 202741092 1.940000e-124 457.0
12 TraesCS7D01G232000 chr7A 87.302 63 4 4 5153 5213 280826348 280826408 1.060000e-07 69.4
13 TraesCS7D01G232000 chr7A 78.448 116 17 8 5153 5264 571689920 571689809 1.060000e-07 69.4
14 TraesCS7D01G232000 chr5D 81.938 227 34 4 5577 5800 389057489 389057267 1.010000e-42 185.0
15 TraesCS7D01G232000 chr5D 80.000 205 27 8 5586 5782 232013046 232013244 7.970000e-29 139.0
16 TraesCS7D01G232000 chr3D 95.349 43 0 2 5065 5106 154737413 154737454 3.810000e-07 67.6
17 TraesCS7D01G232000 chrUn 95.238 42 0 2 5066 5106 86497807 86497767 1.370000e-06 65.8
18 TraesCS7D01G232000 chrUn 95.238 42 0 2 5066 5106 171024818 171024858 1.370000e-06 65.8
19 TraesCS7D01G232000 chrUn 95.238 42 0 2 5066 5106 186171593 186171633 1.370000e-06 65.8
20 TraesCS7D01G232000 chrUn 95.238 42 0 2 5066 5106 399327258 399327298 1.370000e-06 65.8
21 TraesCS7D01G232000 chrUn 92.683 41 2 1 5168 5207 327986071 327986031 2.290000e-04 58.4
22 TraesCS7D01G232000 chrUn 92.683 41 2 1 5168 5207 464806035 464806075 2.290000e-04 58.4
23 TraesCS7D01G232000 chr6D 100.000 35 0 0 5168 5202 385470177 385470211 1.370000e-06 65.8
24 TraesCS7D01G232000 chr4D 95.238 42 0 2 5066 5106 6631492 6631452 1.370000e-06 65.8
25 TraesCS7D01G232000 chr4D 95.238 42 0 2 5066 5106 123601168 123601128 1.370000e-06 65.8
26 TraesCS7D01G232000 chr4A 95.000 40 2 0 5168 5207 430430359 430430320 4.930000e-06 63.9
27 TraesCS7D01G232000 chr6B 100.000 32 0 0 277 308 113769336 113769367 6.380000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G232000 chr7D 193207835 193213730 5895 False 5063.000000 7642 100.000000 1 5896 2 chr7D.!!$F1 5895
1 TraesCS7D01G232000 chr7B 156678980 156685747 6767 False 1318.400000 4933 85.272600 2 5850 5 chr7B.!!$F1 5848
2 TraesCS7D01G232000 chr7A 202736502 202741092 4590 False 1968.666667 4599 89.067333 853 5688 3 chr7A.!!$F2 4835

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
117 118 0.103823 TAGGGGGTTTCCAAGGGTCA 60.104 55.000 0.0 0.00 37.22 4.02 F
576 1759 0.179129 CGCAACCATCATTTCAGGCC 60.179 55.000 0.0 0.00 0.00 5.19 F
907 2106 1.452108 GCCTGCCTTATCCGCAAGT 60.452 57.895 0.0 0.00 35.40 3.16 F
1814 3071 1.223187 TCGTTTCCAGGAAAACTCGC 58.777 50.000 16.7 2.91 37.06 5.03 F
3229 4490 0.107459 GGAGCCTGGACTAGCAAAGG 60.107 60.000 0.0 0.00 0.00 3.11 F
3724 4994 0.179094 TTCCAGTTGACACGCTTCGT 60.179 50.000 0.0 0.00 42.36 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1801 3058 0.040067 GCAAGTGCGAGTTTTCCTGG 60.040 55.000 0.00 0.0 0.00 4.45 R
1814 3071 2.079158 CCAGGAGTGTGTATGCAAGTG 58.921 52.381 0.00 0.0 0.00 3.16 R
2383 3641 3.902881 AATGTAGCAGAGCTTAGCAGT 57.097 42.857 7.07 0.0 40.44 4.40 R
3356 4618 1.305201 ACGCCTGAAATGTTTCGTGT 58.695 45.000 1.49 0.0 40.01 4.49 R
4632 5903 0.102120 AGCTCATCGAAAGCCTCTCG 59.898 55.000 16.88 0.0 40.75 4.04 R
5694 7067 0.181587 TTTGGTTGCTTCTCGGGACA 59.818 50.000 0.00 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 3.181486 ACGAATGAGAAATAGCTCTCGCA 60.181 43.478 0.00 0.00 44.15 5.10
48 49 1.066303 AGAAATAGCTCTCGCACTCCG 59.934 52.381 0.00 0.00 39.10 4.63
85 86 3.089284 CAAATCTGGGGACTAACCAACC 58.911 50.000 0.00 0.00 41.20 3.77
87 88 1.358152 TCTGGGGACTAACCAACCAG 58.642 55.000 0.00 0.00 44.29 4.00
89 90 1.063070 TGGGGACTAACCAACCAGCA 61.063 55.000 0.00 0.00 41.20 4.41
99 100 6.717289 ACTAACCAACCAGCAGTTATCATTA 58.283 36.000 0.00 0.00 36.18 1.90
100 101 6.823689 ACTAACCAACCAGCAGTTATCATTAG 59.176 38.462 0.00 0.00 36.18 1.73
105 106 2.443255 CCAGCAGTTATCATTAGGGGGT 59.557 50.000 0.00 0.00 0.00 4.95
107 108 4.536765 CAGCAGTTATCATTAGGGGGTTT 58.463 43.478 0.00 0.00 0.00 3.27
109 110 3.889538 GCAGTTATCATTAGGGGGTTTCC 59.110 47.826 0.00 0.00 0.00 3.13
114 115 1.643811 TCATTAGGGGGTTTCCAAGGG 59.356 52.381 0.00 0.00 37.22 3.95
115 116 1.361197 CATTAGGGGGTTTCCAAGGGT 59.639 52.381 0.00 0.00 37.22 4.34
116 117 1.078115 TTAGGGGGTTTCCAAGGGTC 58.922 55.000 0.00 0.00 37.22 4.46
117 118 0.103823 TAGGGGGTTTCCAAGGGTCA 60.104 55.000 0.00 0.00 37.22 4.02
118 119 1.228769 GGGGGTTTCCAAGGGTCAC 60.229 63.158 0.00 0.00 37.22 3.67
120 121 0.251209 GGGGTTTCCAAGGGTCACTC 60.251 60.000 0.00 0.00 35.00 3.51
123 124 2.505405 GGTTTCCAAGGGTCACTCTTC 58.495 52.381 0.00 0.00 0.00 2.87
124 125 2.106684 GGTTTCCAAGGGTCACTCTTCT 59.893 50.000 0.00 0.00 0.00 2.85
125 126 3.435169 GGTTTCCAAGGGTCACTCTTCTT 60.435 47.826 0.00 0.00 0.00 2.52
126 127 4.207955 GTTTCCAAGGGTCACTCTTCTTT 58.792 43.478 0.00 0.00 0.00 2.52
128 129 2.106511 TCCAAGGGTCACTCTTCTTTGG 59.893 50.000 0.00 0.00 0.00 3.28
129 130 2.106511 CCAAGGGTCACTCTTCTTTGGA 59.893 50.000 0.00 0.00 0.00 3.53
131 132 1.700186 AGGGTCACTCTTCTTTGGACC 59.300 52.381 0.00 0.00 45.68 4.46
132 133 2.930826 GGTCACTCTTCTTTGGACCA 57.069 50.000 0.00 0.00 45.70 4.02
133 134 3.425162 GGTCACTCTTCTTTGGACCAT 57.575 47.619 0.00 0.00 45.70 3.55
140 141 1.466167 CTTCTTTGGACCATGAGTGCG 59.534 52.381 0.00 0.00 40.31 5.34
146 147 0.320771 GGACCATGAGTGCGTCAAGT 60.321 55.000 0.00 0.00 39.19 3.16
155 156 3.660111 GCGTCAAGTGGTGTGCCC 61.660 66.667 0.00 0.00 0.00 5.36
161 162 4.626081 AGTGGTGTGCCCAGTCGC 62.626 66.667 0.00 0.00 43.93 5.19
172 173 3.490759 CAGTCGCCGCCACATGTC 61.491 66.667 0.00 0.00 0.00 3.06
181 1276 3.879682 CCACATGTCGCATGCCGG 61.880 66.667 13.15 13.82 37.59 6.13
184 1279 2.819154 CATGTCGCATGCCGGACA 60.819 61.111 24.52 24.52 37.59 4.02
187 1282 3.188786 GTCGCATGCCGGACACTC 61.189 66.667 17.64 0.00 37.59 3.51
190 1285 4.101448 GCATGCCGGACACTCCCT 62.101 66.667 5.05 0.00 31.13 4.20
194 1289 1.903877 ATGCCGGACACTCCCTCTTG 61.904 60.000 5.05 0.00 31.13 3.02
353 1467 2.416547 CACATGGAGTGCTTTTACGAGG 59.583 50.000 0.00 0.00 42.15 4.63
355 1469 2.743636 TGGAGTGCTTTTACGAGGAG 57.256 50.000 0.00 0.00 0.00 3.69
356 1470 1.337823 TGGAGTGCTTTTACGAGGAGC 60.338 52.381 0.00 0.00 36.95 4.70
357 1471 1.337823 GGAGTGCTTTTACGAGGAGCA 60.338 52.381 0.00 0.00 43.56 4.26
359 1473 3.430374 GGAGTGCTTTTACGAGGAGCATA 60.430 47.826 9.78 0.00 46.78 3.14
360 1474 3.786635 AGTGCTTTTACGAGGAGCATAG 58.213 45.455 9.78 0.00 46.78 2.23
361 1475 3.447586 AGTGCTTTTACGAGGAGCATAGA 59.552 43.478 9.78 0.00 46.78 1.98
362 1476 4.100189 AGTGCTTTTACGAGGAGCATAGAT 59.900 41.667 9.78 0.00 46.78 1.98
403 1586 7.277760 GGCACTTTTTATGTTTTCACAAGAAGT 59.722 33.333 0.00 0.00 36.16 3.01
417 1600 9.507329 TTTCACAAGAAGTATAGATTTGCTTCT 57.493 29.630 0.00 0.00 46.48 2.85
422 1605 9.302345 CAAGAAGTATAGATTTGCTTCTACGAA 57.698 33.333 6.15 0.00 44.56 3.85
424 1607 9.871238 AGAAGTATAGATTTGCTTCTACGAAAA 57.129 29.630 4.12 0.00 43.82 2.29
506 1689 7.467557 CACAACATGTGCTTTCATAAAAAGT 57.532 32.000 0.00 0.00 41.89 2.66
507 1690 7.339207 CACAACATGTGCTTTCATAAAAAGTG 58.661 34.615 0.00 0.00 41.89 3.16
512 1695 8.603181 ACATGTGCTTTCATAAAAAGTGAAAAC 58.397 29.630 0.00 0.19 42.91 2.43
514 1697 7.099764 TGTGCTTTCATAAAAAGTGAAAACCA 58.900 30.769 3.32 1.72 42.91 3.67
515 1698 7.604164 TGTGCTTTCATAAAAAGTGAAAACCAA 59.396 29.630 3.32 0.00 42.91 3.67
516 1699 8.447053 GTGCTTTCATAAAAAGTGAAAACCAAA 58.553 29.630 3.32 0.00 42.91 3.28
517 1700 9.003658 TGCTTTCATAAAAAGTGAAAACCAAAA 57.996 25.926 3.32 0.00 42.91 2.44
518 1701 9.833182 GCTTTCATAAAAAGTGAAAACCAAAAA 57.167 25.926 3.32 0.00 42.91 1.94
540 1723 4.983671 AAAAGAAAGAAAAGCACGACCT 57.016 36.364 0.00 0.00 0.00 3.85
549 1732 3.418684 AAAGCACGACCTGTCCTTTAT 57.581 42.857 0.00 0.00 0.00 1.40
576 1759 0.179129 CGCAACCATCATTTCAGGCC 60.179 55.000 0.00 0.00 0.00 5.19
606 1794 2.548057 TCTTTGTCTGTTGGCATTCGTC 59.452 45.455 0.00 0.00 0.00 4.20
612 1800 3.975035 GTCTGTTGGCATTCGTCTTTTTC 59.025 43.478 0.00 0.00 0.00 2.29
613 1801 3.882888 TCTGTTGGCATTCGTCTTTTTCT 59.117 39.130 0.00 0.00 0.00 2.52
614 1802 3.963665 TGTTGGCATTCGTCTTTTTCTG 58.036 40.909 0.00 0.00 0.00 3.02
754 1949 3.001576 GCAACGCGAGAAATCCAAC 57.998 52.632 15.93 0.00 0.00 3.77
773 1968 4.420168 CAACAATGAAAACAGTTCGGTGT 58.580 39.130 0.00 0.00 0.00 4.16
802 1997 9.684448 TTTGACGCACAATTCAAGATATAAAAA 57.316 25.926 0.00 0.00 38.36 1.94
803 1998 8.667987 TGACGCACAATTCAAGATATAAAAAC 57.332 30.769 0.00 0.00 0.00 2.43
804 1999 7.480229 TGACGCACAATTCAAGATATAAAAACG 59.520 33.333 0.00 0.00 0.00 3.60
805 2000 7.523219 ACGCACAATTCAAGATATAAAAACGA 58.477 30.769 0.00 0.00 0.00 3.85
806 2001 8.018520 ACGCACAATTCAAGATATAAAAACGAA 58.981 29.630 0.00 0.00 0.00 3.85
907 2106 1.452108 GCCTGCCTTATCCGCAAGT 60.452 57.895 0.00 0.00 35.40 3.16
1348 2553 3.442076 CACCACCTACCTAGTTCCTTCT 58.558 50.000 0.00 0.00 0.00 2.85
1460 2665 3.280295 CATTCTCAAGGAGCTGCAAGAT 58.720 45.455 8.35 0.00 34.07 2.40
1498 2703 8.127327 CACTTCCTATATGACGGTATAATACGG 58.873 40.741 0.00 0.00 35.41 4.02
1501 2706 8.213518 TCCTATATGACGGTATAATACGGAAC 57.786 38.462 0.00 0.00 33.72 3.62
1515 2728 3.713936 GGAACGCAATTGCCTTACC 57.286 52.632 24.24 17.40 37.91 2.85
1564 2799 6.660800 CAGCATTCATCCATCCTAATCCTAT 58.339 40.000 0.00 0.00 0.00 2.57
1568 2803 7.613022 GCATTCATCCATCCTAATCCTATTTCA 59.387 37.037 0.00 0.00 0.00 2.69
1570 2805 9.696572 ATTCATCCATCCTAATCCTATTTCATG 57.303 33.333 0.00 0.00 0.00 3.07
1595 2836 6.865834 ATATGGCTATCTTCTTACTCCAGG 57.134 41.667 0.00 0.00 0.00 4.45
1681 2922 3.510719 TCAAAAGAACAAACTGTGCTGC 58.489 40.909 0.00 0.00 34.45 5.25
1703 2947 7.624360 TGCTATCCTGTTTTTATACAAGTGG 57.376 36.000 0.00 0.00 0.00 4.00
1715 2959 9.793259 TTTTTATACAAGTGGTCTTCATTCTCT 57.207 29.630 0.00 0.00 0.00 3.10
1730 2974 8.826765 TCTTCATTCTCTTATTCCTTACCACTT 58.173 33.333 0.00 0.00 0.00 3.16
1750 2994 5.231779 CACTTTGTTTTGCAAATGACGATGA 59.768 36.000 13.65 0.00 45.00 2.92
1751 2995 5.459762 ACTTTGTTTTGCAAATGACGATGAG 59.540 36.000 13.65 6.99 45.00 2.90
1752 2996 4.566545 TGTTTTGCAAATGACGATGAGT 57.433 36.364 13.65 0.00 0.00 3.41
1753 2997 4.930963 TGTTTTGCAAATGACGATGAGTT 58.069 34.783 13.65 0.00 0.00 3.01
1754 2998 6.066054 TGTTTTGCAAATGACGATGAGTTA 57.934 33.333 13.65 0.00 0.00 2.24
1755 2999 5.912396 TGTTTTGCAAATGACGATGAGTTAC 59.088 36.000 13.65 3.86 0.00 2.50
1756 3000 3.989705 TGCAAATGACGATGAGTTACG 57.010 42.857 0.00 0.00 0.00 3.18
1757 3001 2.670905 TGCAAATGACGATGAGTTACGG 59.329 45.455 0.00 0.00 0.00 4.02
1769 3026 4.546829 TGAGTTACGGGTATTTTGCTCT 57.453 40.909 0.00 0.00 0.00 4.09
1776 3033 3.754850 ACGGGTATTTTGCTCTTTACCAC 59.245 43.478 0.00 0.00 36.61 4.16
1784 3041 9.738832 GTATTTTGCTCTTTACCACTGTTTTAA 57.261 29.630 0.00 0.00 0.00 1.52
1793 3050 3.774734 ACCACTGTTTTAATCCCCCTTC 58.225 45.455 0.00 0.00 0.00 3.46
1801 3058 5.242171 TGTTTTAATCCCCCTTCTTCGTTTC 59.758 40.000 0.00 0.00 0.00 2.78
1814 3071 1.223187 TCGTTTCCAGGAAAACTCGC 58.777 50.000 16.70 2.91 37.06 5.03
2058 3315 6.019237 CGACTTCACTTCCATACATTGATGAG 60.019 42.308 0.00 0.00 0.00 2.90
2136 3393 3.664025 GCACAAAAGTCAACGCATAACTC 59.336 43.478 0.00 0.00 0.00 3.01
2185 3443 4.244425 TCTGTTCTTGGTTTCTCTCTCG 57.756 45.455 0.00 0.00 0.00 4.04
2287 3545 2.767505 GACGCAGAGAAAAAGAGGGAA 58.232 47.619 0.00 0.00 0.00 3.97
2302 3560 2.105649 GAGGGAAGGATTGGATGACCTC 59.894 54.545 0.00 0.00 36.81 3.85
2386 3644 7.905604 TTCCAATGACAACAGAGTATTACTG 57.094 36.000 0.00 0.00 40.68 2.74
2387 3645 5.874810 TCCAATGACAACAGAGTATTACTGC 59.125 40.000 0.00 0.00 38.74 4.40
2388 3646 5.877012 CCAATGACAACAGAGTATTACTGCT 59.123 40.000 0.00 0.00 38.74 4.24
2425 3683 9.098355 ACATTATGTTGTATGCTGTAACTGTAG 57.902 33.333 0.00 0.00 0.00 2.74
2429 3687 6.873997 TGTTGTATGCTGTAACTGTAGCTAT 58.126 36.000 0.00 0.00 40.52 2.97
2432 3690 3.179443 TGCTGTAACTGTAGCTATGCC 57.821 47.619 0.00 0.00 40.52 4.40
2441 3699 7.926555 TGTAACTGTAGCTATGCCTCTTTAATC 59.073 37.037 0.00 0.00 0.00 1.75
2451 3709 9.007901 GCTATGCCTCTTTAATCATTTACTGAT 57.992 33.333 0.00 0.00 46.87 2.90
2490 3748 7.373493 AGGAGTTTGATGTTTTGATAAGCTTG 58.627 34.615 9.86 0.00 0.00 4.01
2510 3768 5.634859 GCTTGTGTGGATATCTTTTGTTTGG 59.365 40.000 2.05 0.00 0.00 3.28
2577 3835 2.866762 GCTTAGCTAATCACCTTGTCCG 59.133 50.000 6.64 0.00 0.00 4.79
2786 4044 6.042781 ACAGGTGAGTTTATTGTAGTTCTCCA 59.957 38.462 0.00 0.00 0.00 3.86
3039 4298 2.297701 TCTTTTTGTGGGTGTCTGCTC 58.702 47.619 0.00 0.00 0.00 4.26
3082 4341 9.635520 ATGAAATTGAAGTTCTTTAGCTTGATG 57.364 29.630 6.92 0.00 0.00 3.07
3119 4378 2.466846 ACCTTGCAAAAAGGGTTCACT 58.533 42.857 7.81 0.00 41.71 3.41
3134 4393 7.170393 AGGGTTCACTATAAAGAAAAATGGC 57.830 36.000 0.00 0.00 0.00 4.40
3229 4490 0.107459 GGAGCCTGGACTAGCAAAGG 60.107 60.000 0.00 0.00 0.00 3.11
3282 4543 9.174166 TGGTATAGCCTAATCTTCAAAGAAAAC 57.826 33.333 0.00 0.00 37.03 2.43
3297 4558 8.519799 TCAAAGAAAACTTCCTACATGTCTTT 57.480 30.769 0.00 0.00 35.12 2.52
3339 4601 7.795431 TGTACATTTTCAATTTTCGCTCATC 57.205 32.000 0.00 0.00 0.00 2.92
3356 4618 5.473931 GCTCATCGGAAGCTTATCTGATTA 58.526 41.667 6.95 0.09 41.58 1.75
3373 4635 5.041951 TGATTACACGAAACATTTCAGGC 57.958 39.130 5.28 0.00 37.01 4.85
3552 4816 6.986231 AGAAATGAACCCACAAAAGAATTGTC 59.014 34.615 0.00 0.00 0.00 3.18
3571 4835 2.106683 CCGCGGGCTAAAGTTCCTG 61.107 63.158 20.10 0.00 0.00 3.86
3587 4851 2.872732 TCCTGTCTCTGACGTACCTTT 58.127 47.619 0.00 0.00 34.95 3.11
3673 4943 8.823220 ATACCATGTGCTTCTTTTATAAACCT 57.177 30.769 0.00 0.00 0.00 3.50
3695 4965 8.819643 ACCTAGCTTATAAGATTCGAATTCAC 57.180 34.615 16.85 0.00 0.00 3.18
3699 4969 8.359060 AGCTTATAAGATTCGAATTCACACTC 57.641 34.615 16.85 0.00 0.00 3.51
3700 4970 7.439655 AGCTTATAAGATTCGAATTCACACTCC 59.560 37.037 16.85 0.00 0.00 3.85
3701 4971 7.439655 GCTTATAAGATTCGAATTCACACTCCT 59.560 37.037 16.85 0.00 0.00 3.69
3703 4973 4.543590 AGATTCGAATTCACACTCCTGT 57.456 40.909 12.81 0.00 0.00 4.00
3707 4977 5.418310 TTCGAATTCACACTCCTGTTTTC 57.582 39.130 6.22 0.00 0.00 2.29
3708 4978 3.813166 TCGAATTCACACTCCTGTTTTCC 59.187 43.478 6.22 0.00 0.00 3.13
3709 4979 3.563808 CGAATTCACACTCCTGTTTTCCA 59.436 43.478 6.22 0.00 0.00 3.53
3710 4980 4.319766 CGAATTCACACTCCTGTTTTCCAG 60.320 45.833 6.22 0.00 41.15 3.86
3711 4981 3.644966 TTCACACTCCTGTTTTCCAGT 57.355 42.857 0.00 0.00 39.74 4.00
3712 4982 3.644966 TCACACTCCTGTTTTCCAGTT 57.355 42.857 0.00 0.00 39.74 3.16
3713 4983 3.278574 TCACACTCCTGTTTTCCAGTTG 58.721 45.455 0.00 0.00 39.74 3.16
3714 4984 3.054728 TCACACTCCTGTTTTCCAGTTGA 60.055 43.478 0.00 0.00 39.74 3.18
3715 4985 3.065371 CACACTCCTGTTTTCCAGTTGAC 59.935 47.826 0.00 0.00 39.74 3.18
3716 4986 3.278574 CACTCCTGTTTTCCAGTTGACA 58.721 45.455 0.00 0.00 39.74 3.58
3717 4987 3.065371 CACTCCTGTTTTCCAGTTGACAC 59.935 47.826 0.00 0.00 39.74 3.67
3718 4988 2.285083 TCCTGTTTTCCAGTTGACACG 58.715 47.619 0.00 0.00 39.74 4.49
3719 4989 1.268539 CCTGTTTTCCAGTTGACACGC 60.269 52.381 0.00 0.00 39.74 5.34
3720 4990 1.670811 CTGTTTTCCAGTTGACACGCT 59.329 47.619 0.00 0.00 36.37 5.07
3721 4991 2.088423 TGTTTTCCAGTTGACACGCTT 58.912 42.857 0.00 0.00 0.00 4.68
3722 4992 2.096819 TGTTTTCCAGTTGACACGCTTC 59.903 45.455 0.00 0.00 0.00 3.86
3723 4993 0.934496 TTTCCAGTTGACACGCTTCG 59.066 50.000 0.00 0.00 0.00 3.79
3724 4994 0.179094 TTCCAGTTGACACGCTTCGT 60.179 50.000 0.00 0.00 42.36 3.85
3725 4995 0.179094 TCCAGTTGACACGCTTCGTT 60.179 50.000 0.00 0.00 38.32 3.85
3795 5065 1.405526 GCTCGATGAGTGGCAGGTTAA 60.406 52.381 0.00 0.00 31.39 2.01
3814 5084 6.157994 AGGTTAATTATGGGTACAGCTGAAGA 59.842 38.462 23.35 1.69 0.00 2.87
3888 5158 3.006537 TGGAGCGGTTCTATATGGTAAGC 59.993 47.826 0.00 0.00 0.00 3.09
3948 5219 3.499157 GGTAGTAGGTGATACAGAGCTCG 59.501 52.174 8.37 6.04 36.79 5.03
3990 5261 7.118723 TGATTGAAAGGAAGTATATGGCTTGT 58.881 34.615 0.01 0.00 0.00 3.16
4023 5294 6.615264 TTTAAACAGCCGTAACATGTGTTA 57.385 33.333 0.00 1.62 39.31 2.41
4579 5850 8.597167 TGATTTCCTTATCCATATGTCTTCGAT 58.403 33.333 1.24 0.00 0.00 3.59
4597 5868 4.191544 TCGATATTTTGAACTGGAGGCAG 58.808 43.478 0.00 0.00 0.00 4.85
4598 5869 3.242870 CGATATTTTGAACTGGAGGCAGC 60.243 47.826 0.00 0.00 0.00 5.25
4601 5872 1.609208 TTTGAACTGGAGGCAGCTTC 58.391 50.000 0.00 0.00 0.00 3.86
4632 5903 0.460284 AATCGTGACTGATGACCGCC 60.460 55.000 0.00 0.00 0.00 6.13
4666 5937 2.362736 TGAGCTGATTCATTGTGCCTC 58.637 47.619 0.00 0.00 0.00 4.70
4667 5938 1.674962 GAGCTGATTCATTGTGCCTCC 59.325 52.381 0.00 0.00 0.00 4.30
4735 6006 1.868997 CAGCACAAGTGGTAAGGCG 59.131 57.895 4.42 0.00 39.58 5.52
4736 6007 1.966451 AGCACAAGTGGTAAGGCGC 60.966 57.895 0.00 0.00 39.83 6.53
4737 6008 1.966451 GCACAAGTGGTAAGGCGCT 60.966 57.895 7.64 0.00 0.00 5.92
4738 6009 1.868997 CACAAGTGGTAAGGCGCTG 59.131 57.895 7.64 0.00 0.00 5.18
4739 6010 1.966451 ACAAGTGGTAAGGCGCTGC 60.966 57.895 7.64 0.00 0.00 5.25
4741 6012 4.760047 AGTGGTAAGGCGCTGCGG 62.760 66.667 24.61 5.63 0.00 5.69
4753 6024 4.790962 CTGCGGCATCTGGGTGCT 62.791 66.667 1.75 0.00 44.45 4.40
4754 6025 3.390183 CTGCGGCATCTGGGTGCTA 62.390 63.158 1.75 0.00 44.45 3.49
4755 6026 2.590007 GCGGCATCTGGGTGCTAG 60.590 66.667 5.80 2.29 44.45 3.42
4756 6027 2.903357 CGGCATCTGGGTGCTAGT 59.097 61.111 5.80 0.00 44.45 2.57
4759 6030 0.035056 GGCATCTGGGTGCTAGTGTT 60.035 55.000 5.80 0.00 44.45 3.32
4760 6031 1.089920 GCATCTGGGTGCTAGTGTTG 58.910 55.000 0.00 0.00 41.82 3.33
4762 6033 2.354704 GCATCTGGGTGCTAGTGTTGTA 60.355 50.000 0.00 0.00 41.82 2.41
4763 6034 3.868369 GCATCTGGGTGCTAGTGTTGTAA 60.868 47.826 0.00 0.00 41.82 2.41
4801 6072 4.354071 TGAAATGATAATGGTGTGTGCG 57.646 40.909 0.00 0.00 0.00 5.34
4808 6079 4.697828 TGATAATGGTGTGTGCGTTTGTAT 59.302 37.500 0.00 0.00 0.00 2.29
4874 6145 4.027437 GGACTGGTCTTCCTCATCTAACT 58.973 47.826 0.67 0.00 34.23 2.24
4897 6168 1.063327 CGCGCCTGTCTCTCTAGTG 59.937 63.158 0.00 0.00 0.00 2.74
4899 6170 0.179150 GCGCCTGTCTCTCTAGTGTG 60.179 60.000 0.00 0.00 0.00 3.82
4928 6200 0.534203 GCCCGCCGGATCAATTTCTA 60.534 55.000 5.05 0.00 0.00 2.10
4957 6229 2.847234 TCTGTGGCCGTGGACCTT 60.847 61.111 0.00 0.00 0.00 3.50
4981 6253 9.627395 CTTAATAATCCGATTCTGGTGTAGTAG 57.373 37.037 0.00 0.00 0.00 2.57
4982 6254 4.323553 AATCCGATTCTGGTGTAGTAGC 57.676 45.455 0.00 0.00 0.00 3.58
4983 6255 2.029623 TCCGATTCTGGTGTAGTAGCC 58.970 52.381 0.00 0.00 0.00 3.93
4984 6256 2.032620 CCGATTCTGGTGTAGTAGCCT 58.967 52.381 0.00 0.00 0.00 4.58
4985 6257 2.431057 CCGATTCTGGTGTAGTAGCCTT 59.569 50.000 0.00 0.00 0.00 4.35
4986 6258 3.491104 CCGATTCTGGTGTAGTAGCCTTC 60.491 52.174 0.00 0.00 0.00 3.46
5032 6306 4.218200 TGTGAAAATTGTGGCAATCGAGAT 59.782 37.500 0.00 0.00 0.00 2.75
5035 6309 6.806249 GTGAAAATTGTGGCAATCGAGATTTA 59.194 34.615 0.00 0.00 0.00 1.40
5036 6310 6.806249 TGAAAATTGTGGCAATCGAGATTTAC 59.194 34.615 0.00 0.00 0.00 2.01
5047 6323 6.288294 CAATCGAGATTTACAGGGGATACAA 58.712 40.000 0.00 0.00 39.74 2.41
5057 6333 7.938140 TTACAGGGGATACAATTTTCTTCAG 57.062 36.000 0.00 0.00 39.74 3.02
5063 6339 6.322491 GGGATACAATTTTCTTCAGAAACCG 58.678 40.000 1.28 0.00 40.45 4.44
5067 6343 5.348164 ACAATTTTCTTCAGAAACCGTTGG 58.652 37.500 17.20 4.77 43.01 3.77
5125 6401 1.291184 TGATGAAGTCACCGCAAGCG 61.291 55.000 7.60 7.60 39.44 4.68
5130 6406 0.032952 AAGTCACCGCAAGCGTCTAA 59.967 50.000 13.80 0.00 37.81 2.10
5134 6410 2.027625 ACCGCAAGCGTCTAACTGC 61.028 57.895 13.80 0.00 37.81 4.40
5155 6431 3.983344 GCTTTGGCTCTTGTACACATTTG 59.017 43.478 0.00 0.00 35.22 2.32
5165 6441 3.218453 TGTACACATTTGTTGACCCAGG 58.782 45.455 0.00 0.00 37.15 4.45
5181 6457 2.027561 CCCAGGAACCGTAGAACAATCA 60.028 50.000 0.00 0.00 0.00 2.57
5367 6740 3.508744 AATCACCTGCAAATTTAGGCG 57.491 42.857 6.88 0.00 37.61 5.52
5401 6774 6.600032 TGAGTGAGAAGTAGTAGATCTTGTCC 59.400 42.308 0.00 0.00 34.48 4.02
5423 6796 4.133078 CAAGAGAGAAGCACCAAGAGTTT 58.867 43.478 0.00 0.00 0.00 2.66
5424 6797 3.737850 AGAGAGAAGCACCAAGAGTTTG 58.262 45.455 0.00 0.00 0.00 2.93
5427 6800 4.133078 AGAGAAGCACCAAGAGTTTGAAG 58.867 43.478 0.00 0.00 36.36 3.02
5431 6804 4.423625 AGCACCAAGAGTTTGAAGTAGT 57.576 40.909 0.00 0.00 36.36 2.73
5433 6806 5.193679 AGCACCAAGAGTTTGAAGTAGTTT 58.806 37.500 0.00 0.00 36.36 2.66
5463 6836 8.613922 ATGTTTAAAGATCCATCCATTCCTTT 57.386 30.769 0.00 0.00 0.00 3.11
5507 6880 8.709272 TTCCCATGATGATGATTATTAAAGCA 57.291 30.769 0.00 0.00 35.06 3.91
5540 6913 4.026062 TGCGAATACATAAAGCTTGCGTAG 60.026 41.667 0.00 0.00 0.00 3.51
5559 6932 5.892568 CGTAGCATTTAGAGTACAAGAGGT 58.107 41.667 0.00 0.00 0.00 3.85
5561 6934 5.091261 AGCATTTAGAGTACAAGAGGTGG 57.909 43.478 0.00 0.00 0.00 4.61
5564 6937 5.811100 GCATTTAGAGTACAAGAGGTGGTAC 59.189 44.000 0.00 0.00 40.06 3.34
5566 6939 6.982160 TTTAGAGTACAAGAGGTGGTACAA 57.018 37.500 0.00 0.00 44.16 2.41
5581 6954 5.166398 GTGGTACAACACATGGTAGAGTAC 58.834 45.833 0.00 3.68 44.16 2.73
5590 6963 4.462834 CACATGGTAGAGTACAAGAGGTGA 59.537 45.833 0.00 0.00 0.00 4.02
5602 6975 5.227569 ACAAGAGGTGATACAACACATGA 57.772 39.130 0.00 0.00 41.88 3.07
5607 6980 4.713553 AGGTGATACAACACATGACACAA 58.286 39.130 0.00 0.00 41.88 3.33
5610 6983 4.903585 GTGATACAACACATGACACAAACG 59.096 41.667 0.00 0.00 40.11 3.60
5611 6984 4.811557 TGATACAACACATGACACAAACGA 59.188 37.500 0.00 0.00 0.00 3.85
5612 6985 5.468409 TGATACAACACATGACACAAACGAT 59.532 36.000 0.00 0.00 0.00 3.73
5671 7044 1.202915 TGAGATGCTCAGCCCAAACAA 60.203 47.619 0.00 0.00 35.39 2.83
5688 7061 6.402011 CCCAAACAAAGCAAAACACAACTAAG 60.402 38.462 0.00 0.00 0.00 2.18
5692 7065 3.609103 AGCAAAACACAACTAAGCTCG 57.391 42.857 0.00 0.00 0.00 5.03
5694 7067 2.287009 GCAAAACACAACTAAGCTCGCT 60.287 45.455 0.00 0.00 0.00 4.93
5699 7072 0.037232 ACAACTAAGCTCGCTGTCCC 60.037 55.000 0.00 0.00 0.00 4.46
5700 7073 1.078759 CAACTAAGCTCGCTGTCCCG 61.079 60.000 0.00 0.00 0.00 5.14
5721 7095 3.447742 GAGAAGCAACCAAACCAACAAG 58.552 45.455 0.00 0.00 0.00 3.16
5738 7112 5.800941 CCAACAAGTAGACGACTAACATCTC 59.199 44.000 0.00 0.00 37.44 2.75
5745 7119 5.012328 AGACGACTAACATCTCCAAATCC 57.988 43.478 0.00 0.00 0.00 3.01
5752 7126 2.991250 ACATCTCCAAATCCAGAACCG 58.009 47.619 0.00 0.00 0.00 4.44
5757 7131 2.171448 CTCCAAATCCAGAACCGAGGAT 59.829 50.000 0.00 0.00 46.33 3.24
5778 7152 0.307760 CCACGAGCAAACAGGACAAC 59.692 55.000 0.00 0.00 0.00 3.32
5787 7161 0.107410 AACAGGACAACGCCTTCACA 60.107 50.000 0.00 0.00 35.66 3.58
5788 7162 0.814010 ACAGGACAACGCCTTCACAC 60.814 55.000 0.00 0.00 35.66 3.82
5800 7174 1.341531 CCTTCACACAGGAGAACGACT 59.658 52.381 0.00 0.00 35.71 4.18
5814 7195 1.557099 ACGACTCCATGAAGGCTGTA 58.443 50.000 0.00 0.00 37.29 2.74
5818 7199 3.305676 CGACTCCATGAAGGCTGTATAGG 60.306 52.174 0.00 0.00 37.29 2.57
5820 7201 4.816126 ACTCCATGAAGGCTGTATAGGTA 58.184 43.478 0.00 0.00 37.29 3.08
5828 7209 5.247564 TGAAGGCTGTATAGGTAAACACAGT 59.752 40.000 0.00 0.00 40.40 3.55
5835 7216 8.996271 GCTGTATAGGTAAACACAGTTAAACTT 58.004 33.333 0.00 0.00 40.40 2.66
5839 7220 4.035909 AGGTAAACACAGTTAAACTTGCCG 59.964 41.667 0.00 0.00 0.00 5.69
5843 7224 4.541085 ACACAGTTAAACTTGCCGTAAC 57.459 40.909 0.00 0.00 0.00 2.50
5850 7231 6.282930 AGTTAAACTTGCCGTAACTGAAGTA 58.717 36.000 0.00 0.00 36.85 2.24
5851 7232 6.932960 AGTTAAACTTGCCGTAACTGAAGTAT 59.067 34.615 0.00 0.00 36.85 2.12
5852 7233 7.443272 AGTTAAACTTGCCGTAACTGAAGTATT 59.557 33.333 0.00 0.00 36.85 1.89
5853 7234 5.607119 AACTTGCCGTAACTGAAGTATTG 57.393 39.130 0.00 0.00 0.00 1.90
5854 7235 4.000988 ACTTGCCGTAACTGAAGTATTGG 58.999 43.478 0.00 0.00 0.00 3.16
5855 7236 2.980568 TGCCGTAACTGAAGTATTGGG 58.019 47.619 0.00 0.00 0.00 4.12
5856 7237 2.303600 TGCCGTAACTGAAGTATTGGGT 59.696 45.455 0.00 0.00 0.00 4.51
5857 7238 3.244630 TGCCGTAACTGAAGTATTGGGTT 60.245 43.478 0.00 0.00 0.00 4.11
5858 7239 3.373130 GCCGTAACTGAAGTATTGGGTTC 59.627 47.826 0.00 0.00 0.00 3.62
5859 7240 4.571919 CCGTAACTGAAGTATTGGGTTCA 58.428 43.478 0.00 0.00 0.00 3.18
5860 7241 4.390909 CCGTAACTGAAGTATTGGGTTCAC 59.609 45.833 0.00 0.00 0.00 3.18
5861 7242 4.390909 CGTAACTGAAGTATTGGGTTCACC 59.609 45.833 0.00 0.00 40.81 4.02
5862 7243 4.724279 AACTGAAGTATTGGGTTCACCT 57.276 40.909 0.00 0.00 41.11 4.00
5863 7244 4.287766 ACTGAAGTATTGGGTTCACCTC 57.712 45.455 0.00 0.00 41.11 3.85
5864 7245 3.650942 ACTGAAGTATTGGGTTCACCTCA 59.349 43.478 0.00 0.00 41.11 3.86
5865 7246 4.104102 ACTGAAGTATTGGGTTCACCTCAA 59.896 41.667 0.00 0.00 41.11 3.02
5866 7247 5.222130 ACTGAAGTATTGGGTTCACCTCAAT 60.222 40.000 13.80 13.80 41.11 2.57
5867 7248 5.009631 TGAAGTATTGGGTTCACCTCAATG 58.990 41.667 16.79 0.00 41.11 2.82
5868 7249 3.356290 AGTATTGGGTTCACCTCAATGC 58.644 45.455 16.79 15.73 41.11 3.56
5869 7250 2.610438 ATTGGGTTCACCTCAATGCT 57.390 45.000 10.29 0.00 41.11 3.79
5870 7251 3.737559 ATTGGGTTCACCTCAATGCTA 57.262 42.857 10.29 0.00 41.11 3.49
5871 7252 3.737559 TTGGGTTCACCTCAATGCTAT 57.262 42.857 0.00 0.00 41.11 2.97
5872 7253 3.003394 TGGGTTCACCTCAATGCTATG 57.997 47.619 0.00 0.00 41.11 2.23
5873 7254 2.308570 TGGGTTCACCTCAATGCTATGT 59.691 45.455 0.00 0.00 41.11 2.29
5874 7255 2.945668 GGGTTCACCTCAATGCTATGTC 59.054 50.000 0.00 0.00 35.85 3.06
5875 7256 3.609853 GGTTCACCTCAATGCTATGTCA 58.390 45.455 0.00 0.00 0.00 3.58
5876 7257 3.624861 GGTTCACCTCAATGCTATGTCAG 59.375 47.826 0.00 0.00 0.00 3.51
5877 7258 4.507710 GTTCACCTCAATGCTATGTCAGA 58.492 43.478 0.00 0.00 0.00 3.27
5878 7259 4.128925 TCACCTCAATGCTATGTCAGAC 57.871 45.455 0.00 0.00 0.00 3.51
5879 7260 3.515104 TCACCTCAATGCTATGTCAGACA 59.485 43.478 5.50 5.50 0.00 3.41
5880 7261 3.869832 CACCTCAATGCTATGTCAGACAG 59.130 47.826 9.64 0.00 0.00 3.51
5881 7262 2.871022 CCTCAATGCTATGTCAGACAGC 59.129 50.000 9.64 8.54 35.82 4.40
5882 7263 2.538861 CTCAATGCTATGTCAGACAGCG 59.461 50.000 9.64 3.58 38.15 5.18
5883 7264 1.596260 CAATGCTATGTCAGACAGCGG 59.404 52.381 9.64 2.93 38.15 5.52
5884 7265 0.531532 ATGCTATGTCAGACAGCGGC 60.532 55.000 9.64 12.66 38.15 6.53
5885 7266 1.153568 GCTATGTCAGACAGCGGCA 60.154 57.895 9.64 0.00 0.00 5.69
5886 7267 1.150567 GCTATGTCAGACAGCGGCAG 61.151 60.000 9.64 0.00 0.00 4.85
5887 7268 1.150567 CTATGTCAGACAGCGGCAGC 61.151 60.000 9.64 0.00 45.58 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 8.162878 TCTCATTCGTACCGATTTCTATTAGT 57.837 34.615 0.00 0.00 35.23 2.24
13 14 6.281405 AGCTATTTCTCATTCGTACCGATTT 58.719 36.000 0.00 0.00 35.23 2.17
43 44 8.665870 ATTTGAGGTTACCAAATCCACGGAGT 62.666 42.308 3.51 0.00 39.75 3.85
81 82 3.885297 CCCCTAATGATAACTGCTGGTTG 59.115 47.826 6.02 0.00 38.75 3.77
85 86 3.864789 ACCCCCTAATGATAACTGCTG 57.135 47.619 0.00 0.00 0.00 4.41
87 88 3.889538 GGAAACCCCCTAATGATAACTGC 59.110 47.826 0.00 0.00 0.00 4.40
89 90 5.340863 CCTTGGAAACCCCCTAATGATAACT 60.341 44.000 0.00 0.00 0.00 2.24
99 100 1.388217 TGACCCTTGGAAACCCCCT 60.388 57.895 0.00 0.00 0.00 4.79
100 101 1.228769 GTGACCCTTGGAAACCCCC 60.229 63.158 0.00 0.00 0.00 5.40
105 106 4.207165 CAAAGAAGAGTGACCCTTGGAAA 58.793 43.478 0.00 0.00 0.00 3.13
107 108 2.106511 CCAAAGAAGAGTGACCCTTGGA 59.893 50.000 0.00 0.00 0.00 3.53
109 110 3.142174 GTCCAAAGAAGAGTGACCCTTG 58.858 50.000 0.00 0.00 0.00 3.61
114 115 3.999663 CTCATGGTCCAAAGAAGAGTGAC 59.000 47.826 0.00 0.00 0.00 3.67
115 116 3.648067 ACTCATGGTCCAAAGAAGAGTGA 59.352 43.478 10.76 0.36 33.96 3.41
116 117 3.750130 CACTCATGGTCCAAAGAAGAGTG 59.250 47.826 18.76 18.76 43.45 3.51
117 118 3.808618 GCACTCATGGTCCAAAGAAGAGT 60.809 47.826 10.76 9.19 35.44 3.24
118 119 2.746362 GCACTCATGGTCCAAAGAAGAG 59.254 50.000 10.76 8.67 0.00 2.85
120 121 1.466167 CGCACTCATGGTCCAAAGAAG 59.534 52.381 10.76 2.51 0.00 2.85
123 124 0.798776 GACGCACTCATGGTCCAAAG 59.201 55.000 0.00 0.00 0.00 2.77
124 125 0.107643 TGACGCACTCATGGTCCAAA 59.892 50.000 0.00 0.00 0.00 3.28
125 126 0.107643 TTGACGCACTCATGGTCCAA 59.892 50.000 0.00 0.00 0.00 3.53
126 127 0.320683 CTTGACGCACTCATGGTCCA 60.321 55.000 0.00 0.00 0.00 4.02
128 129 0.792640 CACTTGACGCACTCATGGTC 59.207 55.000 0.00 0.00 0.00 4.02
129 130 0.603707 CCACTTGACGCACTCATGGT 60.604 55.000 0.00 0.00 27.89 3.55
131 132 0.514255 CACCACTTGACGCACTCATG 59.486 55.000 0.00 0.00 0.00 3.07
132 133 0.106708 ACACCACTTGACGCACTCAT 59.893 50.000 0.00 0.00 0.00 2.90
133 134 0.809636 CACACCACTTGACGCACTCA 60.810 55.000 0.00 0.00 0.00 3.41
140 141 1.152963 ACTGGGCACACCACTTGAC 60.153 57.895 0.00 0.00 46.80 3.18
155 156 3.490759 GACATGTGGCGGCGACTG 61.491 66.667 16.45 6.61 0.00 3.51
181 1276 7.929941 AAAGATAAAATCAAGAGGGAGTGTC 57.070 36.000 0.00 0.00 0.00 3.67
338 1452 2.080286 TGCTCCTCGTAAAAGCACTC 57.920 50.000 0.00 0.00 40.91 3.51
372 1555 7.099764 TGTGAAAACATAAAAAGTGCCTTTCA 58.900 30.769 1.37 0.00 31.99 2.69
373 1556 7.532682 TGTGAAAACATAAAAAGTGCCTTTC 57.467 32.000 1.37 0.00 31.99 2.62
397 1580 9.871238 TTTCGTAGAAGCAAATCTATACTTCTT 57.129 29.630 9.18 0.00 44.91 2.52
461 1644 2.159085 GCTACTTGTAGAAGCACGGGAT 60.159 50.000 11.54 0.00 36.26 3.85
462 1645 1.203994 GCTACTTGTAGAAGCACGGGA 59.796 52.381 11.54 0.00 36.26 5.14
464 1647 2.363788 TGCTACTTGTAGAAGCACGG 57.636 50.000 11.54 0.00 41.15 4.94
486 1669 8.603181 GTTTTCACTTTTTATGAAAGCACATGT 58.397 29.630 8.77 0.00 44.57 3.21
518 1701 5.102313 CAGGTCGTGCTTTTCTTTCTTTTT 58.898 37.500 0.00 0.00 0.00 1.94
519 1702 4.157840 ACAGGTCGTGCTTTTCTTTCTTTT 59.842 37.500 0.00 0.00 0.00 2.27
555 1738 1.067635 GCCTGAAATGATGGTTGCGTT 60.068 47.619 0.00 0.00 0.00 4.84
556 1739 0.527565 GCCTGAAATGATGGTTGCGT 59.472 50.000 0.00 0.00 0.00 5.24
558 1741 0.179129 CGGCCTGAAATGATGGTTGC 60.179 55.000 0.00 0.00 0.00 4.17
559 1742 1.462616 TCGGCCTGAAATGATGGTTG 58.537 50.000 0.00 0.00 0.00 3.77
560 1743 2.214376 TTCGGCCTGAAATGATGGTT 57.786 45.000 0.00 0.00 32.37 3.67
561 1744 2.442236 ATTCGGCCTGAAATGATGGT 57.558 45.000 12.83 0.00 40.71 3.55
562 1745 3.806625 AAATTCGGCCTGAAATGATGG 57.193 42.857 12.83 0.00 40.71 3.51
590 1773 3.626028 AAAAGACGAATGCCAACAGAC 57.374 42.857 0.00 0.00 0.00 3.51
592 1775 3.976942 CAGAAAAAGACGAATGCCAACAG 59.023 43.478 0.00 0.00 0.00 3.16
594 1777 3.243401 ACCAGAAAAAGACGAATGCCAAC 60.243 43.478 0.00 0.00 0.00 3.77
717 1912 6.477742 CGTTGCGATCTTTGAAATTAGATCA 58.522 36.000 13.72 0.00 44.47 2.92
736 1931 0.237235 TGTTGGATTTCTCGCGTTGC 59.763 50.000 5.77 0.00 0.00 4.17
751 1946 4.420168 ACACCGAACTGTTTTCATTGTTG 58.580 39.130 0.00 0.00 0.00 3.33
816 2011 5.987953 GCTGAAGCTGGAGATTTTTCTTTTT 59.012 36.000 0.00 0.00 38.21 1.94
819 2014 3.190118 CGCTGAAGCTGGAGATTTTTCTT 59.810 43.478 0.10 0.00 39.32 2.52
820 2015 2.746362 CGCTGAAGCTGGAGATTTTTCT 59.254 45.455 0.10 0.00 39.32 2.52
821 2016 2.730402 GCGCTGAAGCTGGAGATTTTTC 60.730 50.000 0.00 0.00 39.32 2.29
827 2026 2.395988 TTTGGCGCTGAAGCTGGAGA 62.396 55.000 7.64 0.00 39.32 3.71
866 2065 1.331756 GACATCACATGGATTCACCGC 59.668 52.381 0.00 0.00 42.61 5.68
907 2106 6.098982 ACCATCTTCCATAAACACAAACCAAA 59.901 34.615 0.00 0.00 0.00 3.28
1316 2521 1.553704 GTAGGTGGTGGTAGTGAAGGG 59.446 57.143 0.00 0.00 0.00 3.95
1348 2553 0.251608 TCAGTGGGGTGATGTCGAGA 60.252 55.000 0.00 0.00 0.00 4.04
1460 2665 2.581216 AGGAAGTGTCTACTCCGTCA 57.419 50.000 0.00 0.00 35.69 4.35
1498 2703 0.172578 GGGGTAAGGCAATTGCGTTC 59.827 55.000 34.30 25.37 44.66 3.95
1501 2706 0.823460 AATGGGGTAAGGCAATTGCG 59.177 50.000 23.48 0.00 43.26 4.85
1515 2728 6.040166 GCTGCATATAGGAATGGAATAATGGG 59.960 42.308 0.00 0.00 0.00 4.00
1568 2803 8.901472 TGGAGTAAGAAGATAGCCATATACAT 57.099 34.615 0.00 0.00 0.00 2.29
1570 2805 7.397761 ACCTGGAGTAAGAAGATAGCCATATAC 59.602 40.741 0.00 0.00 0.00 1.47
1658 2899 4.207841 GCAGCACAGTTTGTTCTTTTGATC 59.792 41.667 0.00 0.00 0.00 2.92
1662 2903 3.874392 AGCAGCACAGTTTGTTCTTTT 57.126 38.095 0.00 0.00 0.00 2.27
1681 2922 9.449719 AAGACCACTTGTATAAAAACAGGATAG 57.550 33.333 0.00 0.00 34.80 2.08
1703 2947 8.261522 AGTGGTAAGGAATAAGAGAATGAAGAC 58.738 37.037 0.00 0.00 0.00 3.01
1715 2959 7.113658 TGCAAAACAAAGTGGTAAGGAATAA 57.886 32.000 0.00 0.00 0.00 1.40
1730 2974 4.930963 ACTCATCGTCATTTGCAAAACAA 58.069 34.783 17.19 1.55 36.13 2.83
1750 2994 5.645067 GGTAAAGAGCAAAATACCCGTAACT 59.355 40.000 0.00 0.00 33.25 2.24
1751 2995 5.412286 TGGTAAAGAGCAAAATACCCGTAAC 59.588 40.000 6.39 0.00 37.57 2.50
1752 2996 5.412286 GTGGTAAAGAGCAAAATACCCGTAA 59.588 40.000 6.39 0.00 37.57 3.18
1753 2997 4.937015 GTGGTAAAGAGCAAAATACCCGTA 59.063 41.667 6.39 0.00 37.57 4.02
1754 2998 3.754850 GTGGTAAAGAGCAAAATACCCGT 59.245 43.478 6.39 0.00 37.57 5.28
1755 2999 4.007659 AGTGGTAAAGAGCAAAATACCCG 58.992 43.478 6.39 0.00 37.57 5.28
1756 3000 4.765339 ACAGTGGTAAAGAGCAAAATACCC 59.235 41.667 0.00 0.00 37.57 3.69
1757 3001 5.959618 ACAGTGGTAAAGAGCAAAATACC 57.040 39.130 0.00 0.00 38.61 2.73
1769 3026 5.342361 AGGGGGATTAAAACAGTGGTAAA 57.658 39.130 0.00 0.00 0.00 2.01
1776 3033 4.332828 ACGAAGAAGGGGGATTAAAACAG 58.667 43.478 0.00 0.00 0.00 3.16
1784 3041 1.282157 CTGGAAACGAAGAAGGGGGAT 59.718 52.381 0.00 0.00 0.00 3.85
1793 3050 2.349532 GCGAGTTTTCCTGGAAACGAAG 60.350 50.000 25.57 17.14 42.78 3.79
1801 3058 0.040067 GCAAGTGCGAGTTTTCCTGG 60.040 55.000 0.00 0.00 0.00 4.45
1814 3071 2.079158 CCAGGAGTGTGTATGCAAGTG 58.921 52.381 0.00 0.00 0.00 3.16
2058 3315 7.761249 ACTTTTGTTTCTGATATTATTGGCTGC 59.239 33.333 0.00 0.00 0.00 5.25
2136 3393 7.951530 AAAATTGCAACATTAAGACAGAAGG 57.048 32.000 0.00 0.00 0.00 3.46
2185 3443 7.521377 AGATCAATCTCAACACCAATGTGGAC 61.521 42.308 0.18 0.00 38.68 4.02
2302 3560 8.974408 CATACAACATATGATGCAAAATTCAGG 58.026 33.333 10.38 0.00 0.00 3.86
2368 3626 6.071334 AGCTTAGCAGTAATACTCTGTTGTCA 60.071 38.462 7.07 0.00 35.60 3.58
2381 3639 5.344743 AATGTAGCAGAGCTTAGCAGTAA 57.655 39.130 7.07 0.00 40.44 2.24
2382 3640 6.040955 ACATAATGTAGCAGAGCTTAGCAGTA 59.959 38.462 7.07 0.00 40.44 2.74
2383 3641 3.902881 AATGTAGCAGAGCTTAGCAGT 57.097 42.857 7.07 0.00 40.44 4.40
2384 3642 5.295950 ACATAATGTAGCAGAGCTTAGCAG 58.704 41.667 7.07 0.00 40.44 4.24
2385 3643 5.282055 ACATAATGTAGCAGAGCTTAGCA 57.718 39.130 7.07 0.00 40.44 3.49
2386 3644 5.525378 ACAACATAATGTAGCAGAGCTTAGC 59.475 40.000 0.00 0.00 40.44 3.09
2387 3645 8.706936 CATACAACATAATGTAGCAGAGCTTAG 58.293 37.037 0.00 0.00 40.44 2.18
2388 3646 7.171508 GCATACAACATAATGTAGCAGAGCTTA 59.828 37.037 0.00 0.00 40.44 3.09
2425 3683 8.383318 TCAGTAAATGATTAAAGAGGCATAGC 57.617 34.615 0.00 0.00 31.12 2.97
2490 3748 5.010617 ACCACCAAACAAAAGATATCCACAC 59.989 40.000 0.00 0.00 0.00 3.82
2510 3768 8.986477 AATCAATTGTGCTAAGAAATAACCAC 57.014 30.769 5.13 0.00 0.00 4.16
2577 3835 4.161377 GGAATACTAGGGATCTCAGATGCC 59.839 50.000 17.48 17.48 0.00 4.40
2786 4044 8.306038 TGTGAAATGCTTAGCTAAAATTGACAT 58.694 29.630 7.74 2.49 0.00 3.06
2932 4191 6.551085 AGATTCTAGCAGATCCTCTACATCA 58.449 40.000 0.00 0.00 0.00 3.07
3007 4266 6.016555 ACCCACAAAAAGATAGCATACCTTT 58.983 36.000 0.00 0.00 0.00 3.11
3039 4298 9.720667 TCAATTTCATATTCAAGAATTACTGCG 57.279 29.630 0.02 0.00 32.50 5.18
3198 4459 2.109181 GGCTCCGCTCCACCATAC 59.891 66.667 0.00 0.00 0.00 2.39
3268 4529 8.697507 ACATGTAGGAAGTTTTCTTTGAAGAT 57.302 30.769 0.00 0.00 40.61 2.40
3272 4533 8.519799 AAAGACATGTAGGAAGTTTTCTTTGA 57.480 30.769 0.00 0.00 40.61 2.69
3282 4543 8.329203 AGCTTAAAGAAAAGACATGTAGGAAG 57.671 34.615 0.00 0.00 0.00 3.46
3284 4545 7.680730 AGAGCTTAAAGAAAAGACATGTAGGA 58.319 34.615 0.00 0.00 0.00 2.94
3327 4589 2.029838 AGCTTCCGATGAGCGAAAAT 57.970 45.000 0.00 0.00 44.71 1.82
3339 4601 4.607955 TCGTGTAATCAGATAAGCTTCCG 58.392 43.478 0.00 0.00 0.00 4.30
3356 4618 1.305201 ACGCCTGAAATGTTTCGTGT 58.695 45.000 1.49 0.00 40.01 4.49
3373 4635 6.629649 CGAGCTACTAATAAAGTCAGAGAACG 59.370 42.308 0.00 0.00 39.80 3.95
3519 4783 8.655651 TTTTGTGGGTTCATTTCTTACAAATC 57.344 30.769 0.00 0.00 36.71 2.17
3552 4816 2.822701 GGAACTTTAGCCCGCGGG 60.823 66.667 40.26 40.26 38.57 6.13
3587 4851 5.258051 ACACCCTGACAACTAGAAACAAAA 58.742 37.500 0.00 0.00 0.00 2.44
3595 4859 4.579869 AGCAAATACACCCTGACAACTAG 58.420 43.478 0.00 0.00 0.00 2.57
3637 4901 3.073062 AGCACATGGTATCATAAGTCCCC 59.927 47.826 0.00 0.00 31.33 4.81
3638 4902 4.357918 AGCACATGGTATCATAAGTCCC 57.642 45.455 0.00 0.00 31.33 4.46
3671 4941 8.704234 GTGTGAATTCGAATCTTATAAGCTAGG 58.296 37.037 11.83 0.00 0.00 3.02
3673 4943 9.464714 GAGTGTGAATTCGAATCTTATAAGCTA 57.535 33.333 11.83 0.00 0.00 3.32
3701 4971 1.745232 AGCGTGTCAACTGGAAAACA 58.255 45.000 0.00 0.00 0.00 2.83
3703 4973 1.329292 CGAAGCGTGTCAACTGGAAAA 59.671 47.619 0.00 0.00 0.00 2.29
3707 4977 1.493772 TAACGAAGCGTGTCAACTGG 58.506 50.000 0.00 0.00 39.99 4.00
3708 4978 3.788434 AATAACGAAGCGTGTCAACTG 57.212 42.857 0.00 0.00 39.99 3.16
3709 4979 3.558418 ACAAATAACGAAGCGTGTCAACT 59.442 39.130 0.00 0.00 39.99 3.16
3710 4980 3.868835 ACAAATAACGAAGCGTGTCAAC 58.131 40.909 0.00 0.00 39.99 3.18
3711 4981 3.805422 AGACAAATAACGAAGCGTGTCAA 59.195 39.130 13.03 0.00 39.99 3.18
3712 4982 3.183574 CAGACAAATAACGAAGCGTGTCA 59.816 43.478 13.03 0.00 39.99 3.58
3713 4983 3.722123 CAGACAAATAACGAAGCGTGTC 58.278 45.455 0.00 0.00 39.99 3.67
3714 4984 2.096417 GCAGACAAATAACGAAGCGTGT 60.096 45.455 0.00 0.00 39.99 4.49
3715 4985 2.157668 AGCAGACAAATAACGAAGCGTG 59.842 45.455 0.00 0.00 39.99 5.34
3716 4986 2.413837 AGCAGACAAATAACGAAGCGT 58.586 42.857 0.00 0.00 43.97 5.07
3717 4987 3.123621 AGAAGCAGACAAATAACGAAGCG 59.876 43.478 0.00 0.00 0.00 4.68
3718 4988 4.083802 ACAGAAGCAGACAAATAACGAAGC 60.084 41.667 0.00 0.00 0.00 3.86
3719 4989 5.597813 ACAGAAGCAGACAAATAACGAAG 57.402 39.130 0.00 0.00 0.00 3.79
3720 4990 6.220930 ACTACAGAAGCAGACAAATAACGAA 58.779 36.000 0.00 0.00 0.00 3.85
3721 4991 5.779922 ACTACAGAAGCAGACAAATAACGA 58.220 37.500 0.00 0.00 0.00 3.85
3722 4992 5.633601 TGACTACAGAAGCAGACAAATAACG 59.366 40.000 0.00 0.00 0.00 3.18
3723 4993 7.421530 TTGACTACAGAAGCAGACAAATAAC 57.578 36.000 0.00 0.00 0.00 1.89
3724 4994 8.621532 ATTTGACTACAGAAGCAGACAAATAA 57.378 30.769 9.25 0.00 41.76 1.40
3725 4995 8.621532 AATTTGACTACAGAAGCAGACAAATA 57.378 30.769 10.72 0.00 42.30 1.40
3795 5065 7.457852 TGGTATATCTTCAGCTGTACCCATAAT 59.542 37.037 20.38 7.33 32.55 1.28
3990 5261 9.798994 TGTTACGGCTGTTTAAAATTAAAAAGA 57.201 25.926 16.47 0.00 39.33 2.52
4000 5271 5.502153 AACACATGTTACGGCTGTTTAAA 57.498 34.783 1.99 0.00 36.32 1.52
4008 5279 4.023878 TGAAAACCTAACACATGTTACGGC 60.024 41.667 14.84 5.31 39.31 5.68
4576 5847 3.242870 GCTGCCTCCAGTTCAAAATATCG 60.243 47.826 0.00 0.00 41.26 2.92
4579 5850 3.439857 AGCTGCCTCCAGTTCAAAATA 57.560 42.857 0.00 0.00 41.26 1.40
4597 5868 6.091441 AGTCACGATTCATAACAAAGAGAAGC 59.909 38.462 0.00 0.00 0.00 3.86
4598 5869 7.329471 TCAGTCACGATTCATAACAAAGAGAAG 59.671 37.037 0.00 0.00 0.00 2.85
4601 5872 6.951256 TCAGTCACGATTCATAACAAAGAG 57.049 37.500 0.00 0.00 0.00 2.85
4632 5903 0.102120 AGCTCATCGAAAGCCTCTCG 59.898 55.000 16.88 0.00 40.75 4.04
4639 5910 5.263948 CACAATGAATCAGCTCATCGAAAG 58.736 41.667 0.00 0.00 34.90 2.62
4666 5937 4.850932 GCCGGTGCATAAACCTAATCAGG 61.851 52.174 1.90 0.00 42.09 3.86
4667 5938 2.290641 GCCGGTGCATAAACCTAATCAG 59.709 50.000 1.90 0.00 38.14 2.90
4741 6012 1.089920 CAACACTAGCACCCAGATGC 58.910 55.000 0.00 0.00 46.50 3.91
4742 6013 2.479566 ACAACACTAGCACCCAGATG 57.520 50.000 0.00 0.00 0.00 2.90
4743 6014 3.583086 ACTTACAACACTAGCACCCAGAT 59.417 43.478 0.00 0.00 0.00 2.90
4745 6016 3.402628 ACTTACAACACTAGCACCCAG 57.597 47.619 0.00 0.00 0.00 4.45
4746 6017 5.492855 AATACTTACAACACTAGCACCCA 57.507 39.130 0.00 0.00 0.00 4.51
4747 6018 5.517770 CGTAATACTTACAACACTAGCACCC 59.482 44.000 0.00 0.00 35.89 4.61
4748 6019 5.517770 CCGTAATACTTACAACACTAGCACC 59.482 44.000 0.00 0.00 35.89 5.01
4749 6020 6.324819 TCCGTAATACTTACAACACTAGCAC 58.675 40.000 0.00 0.00 35.89 4.40
4750 6021 6.513806 TCCGTAATACTTACAACACTAGCA 57.486 37.500 0.00 0.00 35.89 3.49
4751 6022 7.198390 TCATCCGTAATACTTACAACACTAGC 58.802 38.462 0.00 0.00 35.89 3.42
4752 6023 9.577110 TTTCATCCGTAATACTTACAACACTAG 57.423 33.333 0.00 0.00 35.89 2.57
4753 6024 9.926158 TTTTCATCCGTAATACTTACAACACTA 57.074 29.630 0.00 0.00 35.89 2.74
4754 6025 8.836268 TTTTCATCCGTAATACTTACAACACT 57.164 30.769 0.00 0.00 35.89 3.55
4755 6026 9.485591 CATTTTCATCCGTAATACTTACAACAC 57.514 33.333 0.00 0.00 35.89 3.32
4756 6027 9.438228 TCATTTTCATCCGTAATACTTACAACA 57.562 29.630 0.00 0.00 35.89 3.33
4773 6044 9.373603 CACACACCATTATCATTTCATTTTCAT 57.626 29.630 0.00 0.00 0.00 2.57
4774 6045 7.331440 GCACACACCATTATCATTTCATTTTCA 59.669 33.333 0.00 0.00 0.00 2.69
4787 6058 5.637006 AATACAAACGCACACACCATTAT 57.363 34.783 0.00 0.00 0.00 1.28
4801 6072 5.615325 GCAGCCTGCAAATCAAAATACAAAC 60.615 40.000 12.82 0.00 44.26 2.93
4913 6184 4.083802 CGAGGAAATAGAAATTGATCCGGC 60.084 45.833 0.00 0.00 30.30 6.13
4914 6185 4.083802 GCGAGGAAATAGAAATTGATCCGG 60.084 45.833 0.00 0.00 30.30 5.14
4928 6200 0.674895 GCCACAGACAGCGAGGAAAT 60.675 55.000 0.00 0.00 0.00 2.17
4957 6229 7.309621 GGCTACTACACCAGAATCGGATTATTA 60.310 40.741 2.65 0.00 0.00 0.98
4983 6255 2.704572 AGCAAGACAGGATTTCCGAAG 58.295 47.619 0.00 0.00 42.08 3.79
4984 6256 2.859165 AGCAAGACAGGATTTCCGAA 57.141 45.000 0.00 0.00 42.08 4.30
4985 6257 2.859165 AAGCAAGACAGGATTTCCGA 57.141 45.000 0.00 0.00 42.08 4.55
4986 6258 3.923017 AAAAGCAAGACAGGATTTCCG 57.077 42.857 0.00 0.00 42.08 4.30
5032 6306 8.167392 TCTGAAGAAAATTGTATCCCCTGTAAA 58.833 33.333 0.00 0.00 0.00 2.01
5035 6309 6.139679 TCTGAAGAAAATTGTATCCCCTGT 57.860 37.500 0.00 0.00 0.00 4.00
5036 6310 7.315890 GTTTCTGAAGAAAATTGTATCCCCTG 58.684 38.462 7.05 0.00 44.58 4.45
5047 6323 6.894339 ATACCAACGGTTTCTGAAGAAAAT 57.106 33.333 7.05 0.00 44.58 1.82
5057 6333 7.597743 CCACTATGAGTATATACCAACGGTTTC 59.402 40.741 9.32 0.00 37.09 2.78
5063 6339 7.097834 GGAAGCCACTATGAGTATATACCAAC 58.902 42.308 9.32 2.86 0.00 3.77
5067 6343 8.414778 GGTATGGAAGCCACTATGAGTATATAC 58.585 40.741 4.60 4.60 35.80 1.47
5125 6401 3.142174 ACAAGAGCCAAAGCAGTTAGAC 58.858 45.455 0.00 0.00 43.56 2.59
5130 6406 2.222027 GTGTACAAGAGCCAAAGCAGT 58.778 47.619 0.00 0.00 43.56 4.40
5134 6410 5.186996 ACAAATGTGTACAAGAGCCAAAG 57.813 39.130 0.00 0.00 35.72 2.77
5155 6431 0.971386 TCTACGGTTCCTGGGTCAAC 59.029 55.000 0.00 0.00 0.00 3.18
5165 6441 7.178712 CCATAGAATGATTGTTCTACGGTTC 57.821 40.000 1.71 0.00 41.90 3.62
5251 6605 8.695456 AGAGGCTTTGTAATTTTCTTTTCTTCA 58.305 29.630 0.00 0.00 0.00 3.02
5252 6606 9.534565 AAGAGGCTTTGTAATTTTCTTTTCTTC 57.465 29.630 0.00 0.00 0.00 2.87
5254 6608 7.928167 CCAAGAGGCTTTGTAATTTTCTTTTCT 59.072 33.333 0.00 0.00 0.00 2.52
5255 6609 8.076714 CCAAGAGGCTTTGTAATTTTCTTTTC 57.923 34.615 0.00 0.00 0.00 2.29
5310 6683 4.040755 ACAGCCCATATTAGTTGAGACCT 58.959 43.478 0.00 0.00 0.00 3.85
5367 6740 6.518208 ACTACTTCTCACTCACAGGATTAC 57.482 41.667 0.00 0.00 0.00 1.89
5401 6774 3.399440 ACTCTTGGTGCTTCTCTCTTG 57.601 47.619 0.00 0.00 0.00 3.02
5431 6804 9.699410 ATGGATGGATCTTTAAACATCAGTAAA 57.301 29.630 14.80 0.00 41.03 2.01
5433 6806 9.342308 GAATGGATGGATCTTTAAACATCAGTA 57.658 33.333 14.80 5.12 41.03 2.74
5507 6880 8.028938 AGCTTTATGTATTCGCAAAACAGAATT 58.971 29.630 0.00 0.00 38.04 2.17
5511 6884 6.452872 GCAAGCTTTATGTATTCGCAAAACAG 60.453 38.462 0.00 0.00 0.00 3.16
5513 6886 5.496969 CGCAAGCTTTATGTATTCGCAAAAC 60.497 40.000 0.00 0.00 0.00 2.43
5514 6887 4.556912 CGCAAGCTTTATGTATTCGCAAAA 59.443 37.500 0.00 0.00 0.00 2.44
5540 6913 4.833390 ACCACCTCTTGTACTCTAAATGC 58.167 43.478 0.00 0.00 0.00 3.56
5545 6918 5.242393 GTGTTGTACCACCTCTTGTACTCTA 59.758 44.000 0.00 0.00 38.48 2.43
5546 6919 4.038883 GTGTTGTACCACCTCTTGTACTCT 59.961 45.833 0.00 0.00 38.48 3.24
5547 6920 4.202182 TGTGTTGTACCACCTCTTGTACTC 60.202 45.833 0.00 0.00 38.48 2.59
5549 6922 4.062677 TGTGTTGTACCACCTCTTGTAC 57.937 45.455 0.00 0.00 38.22 2.90
5550 6923 4.504165 CCATGTGTTGTACCACCTCTTGTA 60.504 45.833 0.00 0.00 34.35 2.41
5552 6925 2.813754 CCATGTGTTGTACCACCTCTTG 59.186 50.000 0.00 0.00 34.35 3.02
5554 6927 2.054799 ACCATGTGTTGTACCACCTCT 58.945 47.619 0.00 0.00 34.35 3.69
5555 6928 2.561478 ACCATGTGTTGTACCACCTC 57.439 50.000 0.00 0.00 34.35 3.85
5558 6931 4.267349 ACTCTACCATGTGTTGTACCAC 57.733 45.455 0.00 0.00 35.86 4.16
5559 6932 4.833938 TGTACTCTACCATGTGTTGTACCA 59.166 41.667 0.00 0.00 31.66 3.25
5561 6934 6.684686 TCTTGTACTCTACCATGTGTTGTAC 58.315 40.000 0.00 0.00 32.49 2.90
5564 6937 5.171476 CCTCTTGTACTCTACCATGTGTTG 58.829 45.833 0.00 0.00 0.00 3.33
5566 6939 4.220821 CACCTCTTGTACTCTACCATGTGT 59.779 45.833 0.00 0.00 0.00 3.72
5567 6940 4.462834 TCACCTCTTGTACTCTACCATGTG 59.537 45.833 0.00 0.00 0.00 3.21
5568 6941 4.673968 TCACCTCTTGTACTCTACCATGT 58.326 43.478 0.00 0.00 0.00 3.21
5569 6942 5.860941 ATCACCTCTTGTACTCTACCATG 57.139 43.478 0.00 0.00 0.00 3.66
5570 6943 6.432581 TGTATCACCTCTTGTACTCTACCAT 58.567 40.000 0.00 0.00 0.00 3.55
5571 6944 5.823312 TGTATCACCTCTTGTACTCTACCA 58.177 41.667 0.00 0.00 0.00 3.25
5572 6945 6.152323 TGTTGTATCACCTCTTGTACTCTACC 59.848 42.308 0.00 0.00 0.00 3.18
5573 6946 7.028361 GTGTTGTATCACCTCTTGTACTCTAC 58.972 42.308 0.00 0.00 32.81 2.59
5574 6947 6.717997 TGTGTTGTATCACCTCTTGTACTCTA 59.282 38.462 0.00 0.00 37.51 2.43
5575 6948 5.538813 TGTGTTGTATCACCTCTTGTACTCT 59.461 40.000 0.00 0.00 37.51 3.24
5581 6954 4.996758 TGTCATGTGTTGTATCACCTCTTG 59.003 41.667 0.00 0.00 37.51 3.02
5590 6963 5.688823 CATCGTTTGTGTCATGTGTTGTAT 58.311 37.500 0.00 0.00 0.00 2.29
5602 6975 0.593128 GCCTCTTGCATCGTTTGTGT 59.407 50.000 0.00 0.00 40.77 3.72
5607 6980 0.602638 TTCACGCCTCTTGCATCGTT 60.603 50.000 0.00 0.00 41.33 3.85
5610 6983 1.089920 ATGTTCACGCCTCTTGCATC 58.910 50.000 0.00 0.00 41.33 3.91
5611 6984 2.401583 TATGTTCACGCCTCTTGCAT 57.598 45.000 0.00 0.00 41.33 3.96
5612 6985 2.177394 TTATGTTCACGCCTCTTGCA 57.823 45.000 0.00 0.00 41.33 4.08
5662 7035 2.079925 TGTGTTTTGCTTTGTTTGGGC 58.920 42.857 0.00 0.00 0.00 5.36
5671 7044 3.792124 GCGAGCTTAGTTGTGTTTTGCTT 60.792 43.478 0.00 0.00 0.00 3.91
5688 7061 2.202676 CTTCTCGGGACAGCGAGC 60.203 66.667 0.00 0.00 32.80 5.03
5692 7065 2.035442 GGTTGCTTCTCGGGACAGC 61.035 63.158 11.19 11.19 0.00 4.40
5694 7067 0.181587 TTTGGTTGCTTCTCGGGACA 59.818 50.000 0.00 0.00 0.00 4.02
5699 7072 1.403679 TGTTGGTTTGGTTGCTTCTCG 59.596 47.619 0.00 0.00 0.00 4.04
5700 7073 3.119137 ACTTGTTGGTTTGGTTGCTTCTC 60.119 43.478 0.00 0.00 0.00 2.87
5721 7095 5.978322 GGATTTGGAGATGTTAGTCGTCTAC 59.022 44.000 0.00 0.00 41.88 2.59
5738 7112 2.292267 CATCCTCGGTTCTGGATTTGG 58.708 52.381 0.00 0.00 40.76 3.28
5745 7119 1.811266 CGTGGCATCCTCGGTTCTG 60.811 63.158 0.00 0.00 36.95 3.02
5770 7144 0.813610 TGTGTGAAGGCGTTGTCCTG 60.814 55.000 0.00 0.00 36.38 3.86
5772 7146 1.507141 CCTGTGTGAAGGCGTTGTCC 61.507 60.000 0.00 0.00 0.00 4.02
5778 7152 1.284982 CGTTCTCCTGTGTGAAGGCG 61.285 60.000 0.00 0.00 37.24 5.52
5800 7174 5.427157 TGTTTACCTATACAGCCTTCATGGA 59.573 40.000 0.00 0.00 38.35 3.41
5803 7177 6.070194 ACTGTGTTTACCTATACAGCCTTCAT 60.070 38.462 0.00 0.00 43.18 2.57
5814 7195 6.072893 CGGCAAGTTTAACTGTGTTTACCTAT 60.073 38.462 0.00 0.00 0.00 2.57
5818 7199 4.912214 ACGGCAAGTTTAACTGTGTTTAC 58.088 39.130 0.00 0.00 0.00 2.01
5820 7201 5.124297 AGTTACGGCAAGTTTAACTGTGTTT 59.876 36.000 0.00 0.00 32.18 2.83
5828 7209 7.308109 CCAATACTTCAGTTACGGCAAGTTTAA 60.308 37.037 5.94 0.00 31.52 1.52
5835 7216 2.303600 ACCCAATACTTCAGTTACGGCA 59.696 45.455 0.00 0.00 0.00 5.69
5839 7220 5.557866 AGGTGAACCCAATACTTCAGTTAC 58.442 41.667 0.00 0.00 36.42 2.50
5843 7224 4.286297 TGAGGTGAACCCAATACTTCAG 57.714 45.455 0.00 0.00 36.42 3.02
5850 7231 2.610438 AGCATTGAGGTGAACCCAAT 57.390 45.000 9.21 9.21 37.37 3.16
5851 7232 3.245229 ACATAGCATTGAGGTGAACCCAA 60.245 43.478 0.00 1.20 36.42 4.12
5852 7233 2.308570 ACATAGCATTGAGGTGAACCCA 59.691 45.455 0.00 0.00 36.42 4.51
5853 7234 2.945668 GACATAGCATTGAGGTGAACCC 59.054 50.000 0.00 0.00 36.42 4.11
5854 7235 3.609853 TGACATAGCATTGAGGTGAACC 58.390 45.455 0.00 0.00 0.00 3.62
5855 7236 4.331168 GTCTGACATAGCATTGAGGTGAAC 59.669 45.833 2.24 0.00 0.00 3.18
5856 7237 4.020307 TGTCTGACATAGCATTGAGGTGAA 60.020 41.667 6.36 0.00 0.00 3.18
5857 7238 3.515104 TGTCTGACATAGCATTGAGGTGA 59.485 43.478 6.36 0.00 0.00 4.02
5858 7239 3.865446 TGTCTGACATAGCATTGAGGTG 58.135 45.455 6.36 0.00 0.00 4.00
5859 7240 3.681034 GCTGTCTGACATAGCATTGAGGT 60.681 47.826 11.45 0.00 39.07 3.85
5860 7241 2.871022 GCTGTCTGACATAGCATTGAGG 59.129 50.000 11.45 0.00 39.07 3.86
5861 7242 2.538861 CGCTGTCTGACATAGCATTGAG 59.461 50.000 18.36 3.83 39.20 3.02
5862 7243 2.543641 CGCTGTCTGACATAGCATTGA 58.456 47.619 18.36 0.00 39.20 2.57
5863 7244 1.596260 CCGCTGTCTGACATAGCATTG 59.404 52.381 18.36 5.06 39.20 2.82
5864 7245 1.945387 CCGCTGTCTGACATAGCATT 58.055 50.000 18.36 0.00 39.20 3.56
5865 7246 0.531532 GCCGCTGTCTGACATAGCAT 60.532 55.000 18.36 0.00 39.20 3.79
5866 7247 1.153568 GCCGCTGTCTGACATAGCA 60.154 57.895 18.36 0.00 39.20 3.49
5867 7248 1.150567 CTGCCGCTGTCTGACATAGC 61.151 60.000 11.45 14.10 35.89 2.97
5868 7249 1.150567 GCTGCCGCTGTCTGACATAG 61.151 60.000 11.45 8.16 0.00 2.23
5869 7250 1.153568 GCTGCCGCTGTCTGACATA 60.154 57.895 11.45 0.00 0.00 2.29
5870 7251 2.435586 GCTGCCGCTGTCTGACAT 60.436 61.111 11.45 0.00 0.00 3.06
5871 7252 2.939133 TTTGCTGCCGCTGTCTGACA 62.939 55.000 10.50 10.50 36.97 3.58
5872 7253 1.785041 TTTTGCTGCCGCTGTCTGAC 61.785 55.000 0.70 0.00 36.97 3.51
5873 7254 0.890542 ATTTTGCTGCCGCTGTCTGA 60.891 50.000 0.70 0.00 36.97 3.27
5874 7255 0.455633 GATTTTGCTGCCGCTGTCTG 60.456 55.000 0.70 0.00 36.97 3.51
5875 7256 1.878775 GATTTTGCTGCCGCTGTCT 59.121 52.632 0.70 0.00 36.97 3.41
5876 7257 1.512734 CGATTTTGCTGCCGCTGTC 60.513 57.895 0.70 0.00 36.97 3.51
5877 7258 2.260869 ACGATTTTGCTGCCGCTGT 61.261 52.632 0.70 0.00 36.97 4.40
5878 7259 2.562912 ACGATTTTGCTGCCGCTG 59.437 55.556 0.70 0.00 36.97 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.