Multiple sequence alignment - TraesCS7D01G231500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G231500 chr7D 100.000 2282 0 0 994 3275 192671104 192668823 0.000000e+00 4215
1 TraesCS7D01G231500 chr7D 100.000 567 0 0 1 567 192672097 192671531 0.000000e+00 1048
2 TraesCS7D01G231500 chr7D 90.541 370 33 2 1 368 388097286 388096917 3.800000e-134 488
3 TraesCS7D01G231500 chr7A 93.879 2320 59 25 997 3275 202290233 202287956 0.000000e+00 3421
4 TraesCS7D01G231500 chr7A 90.811 370 31 3 1 368 438481280 438480912 2.940000e-135 492
5 TraesCS7D01G231500 chr7A 87.940 199 14 7 370 561 202290681 202290486 3.290000e-55 226
6 TraesCS7D01G231500 chr7A 97.101 69 2 0 2020 2088 202289166 202289234 2.060000e-22 117
7 TraesCS7D01G231500 chr7A 95.775 71 3 0 2018 2088 105362153 105362223 7.430000e-22 115
8 TraesCS7D01G231500 chr7B 97.232 1192 27 5 2087 3275 155736249 155735061 0.000000e+00 2013
9 TraesCS7D01G231500 chr7B 93.333 1005 36 15 997 1977 155737245 155736248 0.000000e+00 1456
10 TraesCS7D01G231500 chr7B 91.960 199 10 4 365 561 155737721 155737527 1.160000e-69 274
11 TraesCS7D01G231500 chr7B 95.775 71 3 0 2018 2088 60366549 60366479 7.430000e-22 115
12 TraesCS7D01G231500 chr6D 90.811 370 32 2 1 368 441718839 441719208 8.160000e-136 494
13 TraesCS7D01G231500 chr6D 90.582 361 32 2 1 359 453024266 453024626 8.220000e-131 477
14 TraesCS7D01G231500 chr5B 90.296 371 32 4 1 368 654478729 654479098 1.770000e-132 483
15 TraesCS7D01G231500 chr5B 97.183 71 2 0 2018 2088 457129133 457129203 1.600000e-23 121
16 TraesCS7D01G231500 chr3B 90.270 370 33 3 1 368 525792516 525792884 6.360000e-132 481
17 TraesCS7D01G231500 chr6A 90.027 371 33 4 1 368 395088952 395089321 8.220000e-131 477
18 TraesCS7D01G231500 chr2D 90.296 371 27 6 1 368 167696198 167696562 8.220000e-131 477
19 TraesCS7D01G231500 chr1D 90.027 371 33 4 1 368 220031008 220030639 8.220000e-131 477
20 TraesCS7D01G231500 chr3A 90.435 115 10 1 1974 2088 227368787 227368674 2.040000e-32 150
21 TraesCS7D01G231500 chr3A 93.590 78 4 1 2021 2098 696373500 696373424 7.430000e-22 115
22 TraesCS7D01G231500 chr5A 95.775 71 3 0 2018 2088 330967955 330968025 7.430000e-22 115
23 TraesCS7D01G231500 chr4B 95.775 71 3 0 2018 2088 59873749 59873819 7.430000e-22 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G231500 chr7D 192668823 192672097 3274 True 2631.500000 4215 100.0000 1 3275 2 chr7D.!!$R2 3274
1 TraesCS7D01G231500 chr7A 202287956 202290681 2725 True 1823.500000 3421 90.9095 370 3275 2 chr7A.!!$R2 2905
2 TraesCS7D01G231500 chr7B 155735061 155737721 2660 True 1247.666667 2013 94.1750 365 3275 3 chr7B.!!$R2 2910

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
272 273 0.103715 ATGGATCAGGGGGCCATAGT 60.104 55.0 4.39 0.0 40.47 2.12 F
273 274 0.328450 TGGATCAGGGGGCCATAGTT 60.328 55.0 4.39 0.0 0.00 2.24 F
1178 1209 0.186386 GATCCCTCCTCCTTCTCCGA 59.814 60.0 0.00 0.0 0.00 4.55 F
1991 2127 0.330604 TACTACTCCCTCTGCACCGT 59.669 55.0 0.00 0.0 0.00 4.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1177 1208 0.248702 GAGACCAGATCCGAACGCTC 60.249 60.000 0.00 0.0 0.00 5.03 R
1217 1248 1.413445 GGATGATCAGCTCAGCTCAGT 59.587 52.381 11.34 0.0 40.23 3.41 R
2010 2146 2.540101 GCGACAAATATTACGCTCAGCT 59.460 45.455 19.71 0.0 46.06 4.24 R
3147 3297 6.294176 GGCGGATCAAATGCTATTTTCTACAT 60.294 38.462 0.00 0.0 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 7.907214 TTTCTCTCAGTTATGAAACTAAGGC 57.093 36.000 0.00 0.00 44.28 4.35
31 32 6.859112 TCTCTCAGTTATGAAACTAAGGCT 57.141 37.500 0.00 0.00 44.28 4.58
32 33 7.956328 TCTCTCAGTTATGAAACTAAGGCTA 57.044 36.000 0.00 0.00 44.28 3.93
33 34 8.540507 TCTCTCAGTTATGAAACTAAGGCTAT 57.459 34.615 0.00 0.00 44.28 2.97
34 35 8.634444 TCTCTCAGTTATGAAACTAAGGCTATC 58.366 37.037 0.00 0.00 44.28 2.08
35 36 8.306313 TCTCAGTTATGAAACTAAGGCTATCA 57.694 34.615 0.00 0.00 44.28 2.15
36 37 8.758829 TCTCAGTTATGAAACTAAGGCTATCAA 58.241 33.333 0.00 0.00 44.28 2.57
37 38 9.553064 CTCAGTTATGAAACTAAGGCTATCAAT 57.447 33.333 0.00 0.00 44.28 2.57
38 39 9.547753 TCAGTTATGAAACTAAGGCTATCAATC 57.452 33.333 0.00 0.00 44.28 2.67
39 40 8.778358 CAGTTATGAAACTAAGGCTATCAATCC 58.222 37.037 0.00 0.00 44.28 3.01
40 41 8.494433 AGTTATGAAACTAAGGCTATCAATCCA 58.506 33.333 0.00 0.00 44.26 3.41
41 42 8.778358 GTTATGAAACTAAGGCTATCAATCCAG 58.222 37.037 0.00 0.00 32.54 3.86
42 43 6.313519 TGAAACTAAGGCTATCAATCCAGT 57.686 37.500 0.00 0.00 0.00 4.00
43 44 7.432148 TGAAACTAAGGCTATCAATCCAGTA 57.568 36.000 0.00 0.00 0.00 2.74
44 45 7.500992 TGAAACTAAGGCTATCAATCCAGTAG 58.499 38.462 0.00 0.00 0.00 2.57
45 46 6.426646 AACTAAGGCTATCAATCCAGTAGG 57.573 41.667 0.00 0.00 0.00 3.18
56 57 2.024176 TCCAGTAGGAGAACCAAGCA 57.976 50.000 0.00 0.00 39.61 3.91
57 58 2.334977 TCCAGTAGGAGAACCAAGCAA 58.665 47.619 0.00 0.00 39.61 3.91
58 59 2.038557 TCCAGTAGGAGAACCAAGCAAC 59.961 50.000 0.00 0.00 39.61 4.17
59 60 2.069273 CAGTAGGAGAACCAAGCAACG 58.931 52.381 0.00 0.00 38.94 4.10
60 61 1.968493 AGTAGGAGAACCAAGCAACGA 59.032 47.619 0.00 0.00 38.94 3.85
61 62 2.067013 GTAGGAGAACCAAGCAACGAC 58.933 52.381 0.00 0.00 38.94 4.34
62 63 0.759346 AGGAGAACCAAGCAACGACT 59.241 50.000 0.00 0.00 38.94 4.18
63 64 1.149148 GGAGAACCAAGCAACGACTC 58.851 55.000 0.00 0.00 35.97 3.36
64 65 0.784778 GAGAACCAAGCAACGACTCG 59.215 55.000 0.00 0.00 0.00 4.18
65 66 0.104304 AGAACCAAGCAACGACTCGT 59.896 50.000 0.00 0.00 43.97 4.18
66 67 0.232303 GAACCAAGCAACGACTCGTG 59.768 55.000 4.50 1.04 39.99 4.35
67 68 0.179094 AACCAAGCAACGACTCGTGA 60.179 50.000 4.50 0.00 39.99 4.35
68 69 0.179094 ACCAAGCAACGACTCGTGAA 60.179 50.000 4.50 0.00 39.99 3.18
69 70 0.232303 CCAAGCAACGACTCGTGAAC 59.768 55.000 4.50 0.00 39.99 3.18
70 71 0.927537 CAAGCAACGACTCGTGAACA 59.072 50.000 4.50 0.00 39.99 3.18
71 72 1.526887 CAAGCAACGACTCGTGAACAT 59.473 47.619 4.50 0.00 39.99 2.71
72 73 1.419374 AGCAACGACTCGTGAACATC 58.581 50.000 4.50 0.00 39.99 3.06
73 74 1.136690 GCAACGACTCGTGAACATCA 58.863 50.000 4.50 0.00 39.99 3.07
74 75 1.136611 GCAACGACTCGTGAACATCAC 60.137 52.381 4.50 0.39 43.65 3.06
75 76 1.455786 CAACGACTCGTGAACATCACC 59.544 52.381 4.50 0.00 44.20 4.02
76 77 0.959553 ACGACTCGTGAACATCACCT 59.040 50.000 2.53 0.00 44.20 4.00
77 78 1.335964 ACGACTCGTGAACATCACCTG 60.336 52.381 2.53 1.38 44.20 4.00
78 79 1.071605 GACTCGTGAACATCACCTGC 58.928 55.000 5.00 0.00 44.20 4.85
79 80 0.392706 ACTCGTGAACATCACCTGCA 59.607 50.000 5.00 0.00 44.20 4.41
80 81 0.792640 CTCGTGAACATCACCTGCAC 59.207 55.000 5.00 0.00 44.20 4.57
81 82 0.105778 TCGTGAACATCACCTGCACA 59.894 50.000 5.00 0.00 44.20 4.57
82 83 0.235665 CGTGAACATCACCTGCACAC 59.764 55.000 5.00 0.00 44.20 3.82
83 84 1.308047 GTGAACATCACCTGCACACA 58.692 50.000 0.00 0.00 41.37 3.72
84 85 1.675483 GTGAACATCACCTGCACACAA 59.325 47.619 0.00 0.00 41.37 3.33
85 86 1.948834 TGAACATCACCTGCACACAAG 59.051 47.619 0.00 0.00 0.00 3.16
86 87 0.670162 AACATCACCTGCACACAAGC 59.330 50.000 0.00 0.00 0.00 4.01
87 88 0.466007 ACATCACCTGCACACAAGCA 60.466 50.000 0.00 0.00 43.35 3.91
88 89 0.669619 CATCACCTGCACACAAGCAA 59.330 50.000 0.00 0.00 45.13 3.91
89 90 0.670162 ATCACCTGCACACAAGCAAC 59.330 50.000 0.00 0.00 45.13 4.17
90 91 0.679321 TCACCTGCACACAAGCAACA 60.679 50.000 0.00 0.00 45.13 3.33
91 92 0.526096 CACCTGCACACAAGCAACAC 60.526 55.000 0.00 0.00 45.13 3.32
92 93 0.964860 ACCTGCACACAAGCAACACA 60.965 50.000 0.00 0.00 45.13 3.72
93 94 0.386476 CCTGCACACAAGCAACACAT 59.614 50.000 0.00 0.00 45.13 3.21
94 95 1.608109 CCTGCACACAAGCAACACATA 59.392 47.619 0.00 0.00 45.13 2.29
95 96 2.605338 CCTGCACACAAGCAACACATAC 60.605 50.000 0.00 0.00 45.13 2.39
96 97 2.291465 CTGCACACAAGCAACACATACT 59.709 45.455 0.00 0.00 45.13 2.12
97 98 2.687425 TGCACACAAGCAACACATACTT 59.313 40.909 0.00 0.00 42.46 2.24
98 99 3.044986 GCACACAAGCAACACATACTTG 58.955 45.455 0.00 0.00 44.98 3.16
99 100 3.044986 CACACAAGCAACACATACTTGC 58.955 45.455 0.00 0.00 43.63 4.01
100 101 2.687425 ACACAAGCAACACATACTTGCA 59.313 40.909 5.96 0.00 45.48 4.08
101 102 3.130164 ACACAAGCAACACATACTTGCAA 59.870 39.130 0.00 0.00 45.48 4.08
102 103 3.486841 CACAAGCAACACATACTTGCAAC 59.513 43.478 0.00 0.00 45.48 4.17
103 104 3.052036 CAAGCAACACATACTTGCAACC 58.948 45.455 0.00 0.00 45.48 3.77
104 105 1.613437 AGCAACACATACTTGCAACCC 59.387 47.619 0.00 0.00 45.48 4.11
105 106 1.339610 GCAACACATACTTGCAACCCA 59.660 47.619 0.00 0.00 43.04 4.51
106 107 2.223923 GCAACACATACTTGCAACCCAA 60.224 45.455 0.00 0.00 43.04 4.12
107 108 3.380142 CAACACATACTTGCAACCCAAC 58.620 45.455 0.00 0.00 0.00 3.77
108 109 1.606668 ACACATACTTGCAACCCAACG 59.393 47.619 0.00 0.00 0.00 4.10
109 110 0.596082 ACATACTTGCAACCCAACGC 59.404 50.000 0.00 0.00 0.00 4.84
110 111 0.454285 CATACTTGCAACCCAACGCG 60.454 55.000 3.53 3.53 0.00 6.01
111 112 0.604243 ATACTTGCAACCCAACGCGA 60.604 50.000 15.93 0.00 0.00 5.87
112 113 0.814410 TACTTGCAACCCAACGCGAA 60.814 50.000 15.93 0.00 0.00 4.70
113 114 1.657181 CTTGCAACCCAACGCGAAC 60.657 57.895 15.93 0.00 0.00 3.95
114 115 2.329678 CTTGCAACCCAACGCGAACA 62.330 55.000 15.93 0.00 0.00 3.18
115 116 1.934220 TTGCAACCCAACGCGAACAA 61.934 50.000 15.93 1.92 0.00 2.83
116 117 1.657181 GCAACCCAACGCGAACAAG 60.657 57.895 15.93 0.00 0.00 3.16
117 118 1.008995 CAACCCAACGCGAACAAGG 60.009 57.895 15.93 8.56 0.00 3.61
118 119 2.190841 AACCCAACGCGAACAAGGG 61.191 57.895 15.93 17.99 45.20 3.95
119 120 3.361977 CCCAACGCGAACAAGGGG 61.362 66.667 15.93 10.10 35.83 4.79
120 121 2.593436 CCAACGCGAACAAGGGGT 60.593 61.111 15.93 0.00 0.00 4.95
121 122 2.190841 CCAACGCGAACAAGGGGTT 61.191 57.895 15.93 0.00 44.10 4.11
122 123 1.008995 CAACGCGAACAAGGGGTTG 60.009 57.895 15.93 0.00 46.85 3.77
123 124 1.452470 AACGCGAACAAGGGGTTGT 60.452 52.632 15.93 0.00 40.63 3.32
124 125 1.441732 AACGCGAACAAGGGGTTGTC 61.442 55.000 15.93 0.00 40.63 3.18
125 126 1.890041 CGCGAACAAGGGGTTGTCA 60.890 57.895 0.00 0.00 40.63 3.58
126 127 1.440938 CGCGAACAAGGGGTTGTCAA 61.441 55.000 0.00 0.00 40.63 3.18
127 128 0.958822 GCGAACAAGGGGTTGTCAAT 59.041 50.000 0.00 0.00 40.63 2.57
128 129 1.068541 GCGAACAAGGGGTTGTCAATC 60.069 52.381 0.00 0.00 40.63 2.67
129 130 1.539827 CGAACAAGGGGTTGTCAATCC 59.460 52.381 6.29 6.29 40.63 3.01
130 131 2.814097 CGAACAAGGGGTTGTCAATCCT 60.814 50.000 14.63 9.33 40.63 3.24
131 132 3.230976 GAACAAGGGGTTGTCAATCCTT 58.769 45.455 14.63 14.26 40.63 3.36
132 133 2.876581 ACAAGGGGTTGTCAATCCTTC 58.123 47.619 14.63 0.00 37.50 3.46
133 134 2.176798 ACAAGGGGTTGTCAATCCTTCA 59.823 45.455 14.63 0.00 37.50 3.02
134 135 2.558359 CAAGGGGTTGTCAATCCTTCAC 59.442 50.000 14.63 0.00 37.50 3.18
135 136 1.165270 GGGGTTGTCAATCCTTCACG 58.835 55.000 14.63 0.00 0.00 4.35
136 137 1.165270 GGGTTGTCAATCCTTCACGG 58.835 55.000 7.69 0.00 0.00 4.94
137 138 1.544759 GGGTTGTCAATCCTTCACGGT 60.545 52.381 7.69 0.00 0.00 4.83
138 139 2.227194 GGTTGTCAATCCTTCACGGTT 58.773 47.619 0.00 0.00 0.00 4.44
139 140 3.404899 GGTTGTCAATCCTTCACGGTTA 58.595 45.455 0.00 0.00 0.00 2.85
140 141 3.187842 GGTTGTCAATCCTTCACGGTTAC 59.812 47.826 0.00 0.00 0.00 2.50
142 143 2.296752 TGTCAATCCTTCACGGTTACGA 59.703 45.455 0.00 0.00 44.60 3.43
143 144 2.921754 GTCAATCCTTCACGGTTACGAG 59.078 50.000 0.00 0.00 44.60 4.18
144 145 2.559668 TCAATCCTTCACGGTTACGAGT 59.440 45.455 0.00 0.00 44.60 4.18
145 146 3.758023 TCAATCCTTCACGGTTACGAGTA 59.242 43.478 0.00 0.00 44.60 2.59
146 147 4.218200 TCAATCCTTCACGGTTACGAGTAA 59.782 41.667 0.00 0.00 44.60 2.24
147 148 3.837213 TCCTTCACGGTTACGAGTAAG 57.163 47.619 0.00 0.00 44.60 2.34
148 149 3.411446 TCCTTCACGGTTACGAGTAAGA 58.589 45.455 0.00 0.00 44.60 2.10
149 150 4.012374 TCCTTCACGGTTACGAGTAAGAT 58.988 43.478 0.00 0.00 44.60 2.40
150 151 4.460382 TCCTTCACGGTTACGAGTAAGATT 59.540 41.667 0.00 0.00 44.60 2.40
151 152 5.647658 TCCTTCACGGTTACGAGTAAGATTA 59.352 40.000 0.00 0.00 44.60 1.75
152 153 6.150976 TCCTTCACGGTTACGAGTAAGATTAA 59.849 38.462 0.00 0.00 44.60 1.40
153 154 6.808212 CCTTCACGGTTACGAGTAAGATTAAA 59.192 38.462 0.00 0.00 44.60 1.52
154 155 7.490402 CCTTCACGGTTACGAGTAAGATTAAAT 59.510 37.037 0.00 0.00 44.60 1.40
155 156 8.761575 TTCACGGTTACGAGTAAGATTAAATT 57.238 30.769 0.00 0.00 44.60 1.82
156 157 8.176814 TCACGGTTACGAGTAAGATTAAATTG 57.823 34.615 0.00 0.00 44.60 2.32
157 158 7.814107 TCACGGTTACGAGTAAGATTAAATTGT 59.186 33.333 0.00 0.00 44.60 2.71
158 159 9.075519 CACGGTTACGAGTAAGATTAAATTGTA 57.924 33.333 0.00 0.00 44.60 2.41
159 160 9.807649 ACGGTTACGAGTAAGATTAAATTGTAT 57.192 29.630 0.00 0.00 44.60 2.29
224 225 6.849588 AAATAAAAGAAAACTGCAGCAAGG 57.150 33.333 15.27 0.00 0.00 3.61
225 226 3.893326 AAAAGAAAACTGCAGCAAGGT 57.107 38.095 15.27 0.00 0.00 3.50
226 227 6.648879 ATAAAAGAAAACTGCAGCAAGGTA 57.351 33.333 15.27 0.00 0.00 3.08
227 228 5.535753 AAAAGAAAACTGCAGCAAGGTAT 57.464 34.783 15.27 0.00 0.00 2.73
228 229 5.535753 AAAGAAAACTGCAGCAAGGTATT 57.464 34.783 15.27 0.00 0.00 1.89
229 230 5.535753 AAGAAAACTGCAGCAAGGTATTT 57.464 34.783 15.27 1.65 0.00 1.40
230 231 5.535753 AGAAAACTGCAGCAAGGTATTTT 57.464 34.783 15.27 11.01 0.00 1.82
231 232 5.917462 AGAAAACTGCAGCAAGGTATTTTT 58.083 33.333 15.27 10.25 0.00 1.94
232 233 5.754890 AGAAAACTGCAGCAAGGTATTTTTG 59.245 36.000 15.27 0.00 0.00 2.44
233 234 3.665745 ACTGCAGCAAGGTATTTTTGG 57.334 42.857 15.27 0.00 0.00 3.28
234 235 2.965147 ACTGCAGCAAGGTATTTTTGGT 59.035 40.909 15.27 0.00 36.76 3.67
235 236 3.387699 ACTGCAGCAAGGTATTTTTGGTT 59.612 39.130 15.27 0.00 34.32 3.67
236 237 4.141733 ACTGCAGCAAGGTATTTTTGGTTT 60.142 37.500 15.27 0.00 34.32 3.27
237 238 4.775236 TGCAGCAAGGTATTTTTGGTTTT 58.225 34.783 0.00 0.00 34.32 2.43
238 239 5.918608 TGCAGCAAGGTATTTTTGGTTTTA 58.081 33.333 0.00 0.00 34.32 1.52
239 240 6.349300 TGCAGCAAGGTATTTTTGGTTTTAA 58.651 32.000 0.00 0.00 34.32 1.52
240 241 6.995091 TGCAGCAAGGTATTTTTGGTTTTAAT 59.005 30.769 0.00 0.00 34.32 1.40
241 242 8.150945 TGCAGCAAGGTATTTTTGGTTTTAATA 58.849 29.630 0.00 0.00 34.32 0.98
242 243 9.161629 GCAGCAAGGTATTTTTGGTTTTAATAT 57.838 29.630 0.00 0.00 34.32 1.28
265 266 4.729552 TGATAAAAGATGGATCAGGGGG 57.270 45.455 0.00 0.00 0.00 5.40
266 267 3.181429 TGATAAAAGATGGATCAGGGGGC 60.181 47.826 0.00 0.00 0.00 5.80
267 268 0.262876 AAAAGATGGATCAGGGGGCC 59.737 55.000 0.00 0.00 0.00 5.80
268 269 0.925720 AAAGATGGATCAGGGGGCCA 60.926 55.000 4.39 0.00 35.91 5.36
269 270 0.703758 AAGATGGATCAGGGGGCCAT 60.704 55.000 4.39 0.00 44.70 4.40
270 271 0.196888 AGATGGATCAGGGGGCCATA 59.803 55.000 4.39 0.00 42.22 2.74
271 272 0.622665 GATGGATCAGGGGGCCATAG 59.377 60.000 4.39 0.00 42.22 2.23
272 273 0.103715 ATGGATCAGGGGGCCATAGT 60.104 55.000 4.39 0.00 40.47 2.12
273 274 0.328450 TGGATCAGGGGGCCATAGTT 60.328 55.000 4.39 0.00 0.00 2.24
274 275 0.853530 GGATCAGGGGGCCATAGTTT 59.146 55.000 4.39 0.00 0.00 2.66
275 276 1.217942 GGATCAGGGGGCCATAGTTTT 59.782 52.381 4.39 0.00 0.00 2.43
276 277 2.587522 GATCAGGGGGCCATAGTTTTC 58.412 52.381 4.39 0.00 0.00 2.29
277 278 1.377690 TCAGGGGGCCATAGTTTTCA 58.622 50.000 4.39 0.00 0.00 2.69
278 279 1.005450 TCAGGGGGCCATAGTTTTCAC 59.995 52.381 4.39 0.00 0.00 3.18
279 280 1.005924 CAGGGGGCCATAGTTTTCACT 59.994 52.381 4.39 0.00 36.99 3.41
280 281 2.241176 CAGGGGGCCATAGTTTTCACTA 59.759 50.000 4.39 0.00 39.94 2.74
281 282 2.509964 AGGGGGCCATAGTTTTCACTAG 59.490 50.000 4.39 0.00 38.96 2.57
282 283 2.508300 GGGGGCCATAGTTTTCACTAGA 59.492 50.000 4.39 0.00 38.96 2.43
283 284 3.433740 GGGGGCCATAGTTTTCACTAGAG 60.434 52.174 4.39 0.00 38.96 2.43
284 285 3.433740 GGGGCCATAGTTTTCACTAGAGG 60.434 52.174 4.39 0.00 38.96 3.69
289 290 5.983540 CCATAGTTTTCACTAGAGGCTTCT 58.016 41.667 3.00 3.00 38.96 2.85
290 291 6.045955 CCATAGTTTTCACTAGAGGCTTCTC 58.954 44.000 0.00 0.00 38.96 2.87
292 293 5.400066 AGTTTTCACTAGAGGCTTCTCTC 57.600 43.478 0.00 0.00 43.99 3.20
293 294 5.083821 AGTTTTCACTAGAGGCTTCTCTCT 58.916 41.667 0.00 0.00 43.99 3.10
294 295 5.542251 AGTTTTCACTAGAGGCTTCTCTCTT 59.458 40.000 0.00 0.00 43.99 2.85
295 296 5.398603 TTTCACTAGAGGCTTCTCTCTTG 57.601 43.478 0.00 0.00 43.99 3.02
296 297 4.308526 TCACTAGAGGCTTCTCTCTTGA 57.691 45.455 0.00 0.90 43.99 3.02
297 298 4.667573 TCACTAGAGGCTTCTCTCTTGAA 58.332 43.478 0.00 0.00 43.99 2.69
298 299 5.080337 TCACTAGAGGCTTCTCTCTTGAAA 58.920 41.667 0.00 0.00 43.99 2.69
299 300 5.540337 TCACTAGAGGCTTCTCTCTTGAAAA 59.460 40.000 0.00 0.00 43.99 2.29
300 301 6.212388 TCACTAGAGGCTTCTCTCTTGAAAAT 59.788 38.462 0.00 0.00 43.99 1.82
301 302 7.397476 TCACTAGAGGCTTCTCTCTTGAAAATA 59.603 37.037 0.00 0.00 43.99 1.40
302 303 7.706179 CACTAGAGGCTTCTCTCTTGAAAATAG 59.294 40.741 0.00 0.00 43.99 1.73
303 304 5.427378 AGAGGCTTCTCTCTTGAAAATAGC 58.573 41.667 0.00 0.00 43.99 2.97
304 305 5.046014 AGAGGCTTCTCTCTTGAAAATAGCA 60.046 40.000 0.00 0.00 43.99 3.49
305 306 5.753716 AGGCTTCTCTCTTGAAAATAGCAT 58.246 37.500 0.00 0.00 0.00 3.79
306 307 6.893583 AGGCTTCTCTCTTGAAAATAGCATA 58.106 36.000 0.00 0.00 0.00 3.14
307 308 6.765512 AGGCTTCTCTCTTGAAAATAGCATAC 59.234 38.462 0.00 0.00 0.00 2.39
308 309 6.540189 GGCTTCTCTCTTGAAAATAGCATACA 59.460 38.462 0.00 0.00 0.00 2.29
309 310 7.254727 GGCTTCTCTCTTGAAAATAGCATACAG 60.255 40.741 0.00 0.00 0.00 2.74
310 311 7.279758 GCTTCTCTCTTGAAAATAGCATACAGT 59.720 37.037 0.00 0.00 0.00 3.55
311 312 8.484641 TTCTCTCTTGAAAATAGCATACAGTG 57.515 34.615 0.00 0.00 0.00 3.66
312 313 7.044181 TCTCTCTTGAAAATAGCATACAGTGG 58.956 38.462 0.00 0.00 0.00 4.00
313 314 6.115446 TCTCTTGAAAATAGCATACAGTGGG 58.885 40.000 0.00 0.00 0.00 4.61
314 315 5.815581 TCTTGAAAATAGCATACAGTGGGT 58.184 37.500 0.00 0.00 0.00 4.51
315 316 6.953101 TCTTGAAAATAGCATACAGTGGGTA 58.047 36.000 0.00 0.00 36.16 3.69
316 317 7.398829 TCTTGAAAATAGCATACAGTGGGTAA 58.601 34.615 0.00 0.00 35.14 2.85
317 318 6.995511 TGAAAATAGCATACAGTGGGTAAC 57.004 37.500 0.00 0.00 35.14 2.50
318 319 6.477253 TGAAAATAGCATACAGTGGGTAACA 58.523 36.000 0.00 0.00 35.14 2.41
331 332 4.708576 TGGGTAACACATTACTGTTGGA 57.291 40.909 0.00 0.00 40.59 3.53
332 333 4.391155 TGGGTAACACATTACTGTTGGAC 58.609 43.478 0.00 0.00 40.59 4.02
333 334 3.754850 GGGTAACACATTACTGTTGGACC 59.245 47.826 0.00 0.00 40.59 4.46
334 335 4.391155 GGTAACACATTACTGTTGGACCA 58.609 43.478 0.00 0.00 40.59 4.02
335 336 5.007682 GGTAACACATTACTGTTGGACCAT 58.992 41.667 0.00 0.00 40.59 3.55
336 337 5.475564 GGTAACACATTACTGTTGGACCATT 59.524 40.000 0.00 0.00 40.59 3.16
337 338 5.452078 AACACATTACTGTTGGACCATTG 57.548 39.130 0.00 0.00 32.95 2.82
338 339 4.724399 ACACATTACTGTTGGACCATTGA 58.276 39.130 0.00 0.00 31.62 2.57
339 340 5.324409 ACACATTACTGTTGGACCATTGAT 58.676 37.500 0.00 0.00 31.62 2.57
340 341 6.480763 ACACATTACTGTTGGACCATTGATA 58.519 36.000 0.00 0.00 31.62 2.15
341 342 6.599244 ACACATTACTGTTGGACCATTGATAG 59.401 38.462 0.00 0.00 31.62 2.08
342 343 6.823182 CACATTACTGTTGGACCATTGATAGA 59.177 38.462 0.00 0.00 31.62 1.98
343 344 7.336679 CACATTACTGTTGGACCATTGATAGAA 59.663 37.037 0.00 0.00 31.62 2.10
344 345 7.888021 ACATTACTGTTGGACCATTGATAGAAA 59.112 33.333 0.00 0.00 28.70 2.52
345 346 8.739039 CATTACTGTTGGACCATTGATAGAAAA 58.261 33.333 0.00 0.00 0.00 2.29
346 347 6.824305 ACTGTTGGACCATTGATAGAAAAG 57.176 37.500 0.00 0.00 0.00 2.27
347 348 6.306987 ACTGTTGGACCATTGATAGAAAAGT 58.693 36.000 0.00 0.00 0.00 2.66
348 349 7.458397 ACTGTTGGACCATTGATAGAAAAGTA 58.542 34.615 0.00 0.00 0.00 2.24
349 350 7.942341 ACTGTTGGACCATTGATAGAAAAGTAA 59.058 33.333 0.00 0.00 0.00 2.24
350 351 8.698973 TGTTGGACCATTGATAGAAAAGTAAA 57.301 30.769 0.00 0.00 0.00 2.01
351 352 9.308000 TGTTGGACCATTGATAGAAAAGTAAAT 57.692 29.630 0.00 0.00 0.00 1.40
399 400 9.772973 ATTTAACTCCCAATTACTTGTTTTTCC 57.227 29.630 0.00 0.00 0.00 3.13
400 401 8.541899 TTAACTCCCAATTACTTGTTTTTCCT 57.458 30.769 0.00 0.00 0.00 3.36
496 504 4.081050 AAAAAGAGCTCCCCACGC 57.919 55.556 10.93 0.00 0.00 5.34
561 571 3.554692 CGATTGTCGCCTCACCGC 61.555 66.667 0.00 0.00 31.14 5.68
562 572 2.125512 GATTGTCGCCTCACCGCT 60.126 61.111 0.00 0.00 0.00 5.52
564 574 2.835701 GATTGTCGCCTCACCGCTGA 62.836 60.000 0.00 0.00 0.00 4.26
566 576 2.125512 GTCGCCTCACCGCTGATT 60.126 61.111 0.00 0.00 0.00 2.57
1042 1052 1.304464 CAGCCCAGAAACCTTCCCC 60.304 63.158 0.00 0.00 0.00 4.81
1104 1114 2.997897 GCCCACGTCCTGGACTCT 60.998 66.667 23.49 6.67 43.95 3.24
1170 1180 2.905807 CGTACGCGATCCCTCCTCC 61.906 68.421 15.93 0.00 41.33 4.30
1171 1181 1.528776 GTACGCGATCCCTCCTCCT 60.529 63.158 15.93 0.00 0.00 3.69
1172 1182 1.108132 GTACGCGATCCCTCCTCCTT 61.108 60.000 15.93 0.00 0.00 3.36
1177 1208 1.175983 CGATCCCTCCTCCTTCTCCG 61.176 65.000 0.00 0.00 0.00 4.63
1178 1209 0.186386 GATCCCTCCTCCTTCTCCGA 59.814 60.000 0.00 0.00 0.00 4.55
1185 1216 1.226435 CTCCTTCTCCGAGCGTTCG 60.226 63.158 15.26 15.26 46.29 3.95
1194 1225 1.586564 CGAGCGTTCGGATCTGGTC 60.587 63.158 14.37 0.00 43.05 4.02
1197 1228 1.227002 GCGTTCGGATCTGGTCTCC 60.227 63.158 0.62 0.00 0.00 3.71
1201 1232 2.104170 GTTCGGATCTGGTCTCCTTCT 58.896 52.381 0.62 0.00 0.00 2.85
1203 1234 1.566703 TCGGATCTGGTCTCCTTCTCT 59.433 52.381 0.62 0.00 0.00 3.10
1217 1248 3.270696 TCCTTCTCTCCCTTCATCTCTCA 59.729 47.826 0.00 0.00 0.00 3.27
1454 1490 0.706433 AGCCATCCCTTGATGTGGTT 59.294 50.000 2.24 0.00 45.78 3.67
1497 1543 1.176527 GCTTATCAGCAACTTGGCCA 58.823 50.000 0.00 0.00 46.49 5.36
1498 1544 1.135286 GCTTATCAGCAACTTGGCCAC 60.135 52.381 3.88 0.00 46.49 5.01
1499 1545 1.474077 CTTATCAGCAACTTGGCCACC 59.526 52.381 3.88 0.00 0.00 4.61
1500 1546 0.698238 TATCAGCAACTTGGCCACCT 59.302 50.000 3.88 0.00 0.00 4.00
1501 1547 0.610232 ATCAGCAACTTGGCCACCTC 60.610 55.000 3.88 0.00 0.00 3.85
1502 1548 1.529010 CAGCAACTTGGCCACCTCA 60.529 57.895 3.88 0.00 0.00 3.86
1573 1619 6.575572 CGTAATTTTACAAACAATCACAGCGA 59.424 34.615 1.76 0.00 33.28 4.93
1574 1620 6.991485 AATTTTACAAACAATCACAGCGAG 57.009 33.333 0.00 0.00 0.00 5.03
1693 1746 4.774124 TGAATCAGTGCTTTAGGATCAGG 58.226 43.478 0.00 0.00 0.00 3.86
1705 1758 6.706270 GCTTTAGGATCAGGAACATCGAATAA 59.294 38.462 0.00 0.00 0.00 1.40
1759 1812 6.095300 CCATGTTAACAATGGCTGTCATCTTA 59.905 38.462 13.23 0.00 37.23 2.10
1781 1834 5.726980 AGTTTTGAAGCCATAAAGATGCA 57.273 34.783 0.00 0.00 0.00 3.96
1978 2114 9.061435 AGTACTTCGTTTGTCTAAACTACTACT 57.939 33.333 0.00 0.00 43.13 2.57
1979 2115 9.323963 GTACTTCGTTTGTCTAAACTACTACTC 57.676 37.037 0.00 0.00 43.13 2.59
1980 2116 7.366513 ACTTCGTTTGTCTAAACTACTACTCC 58.633 38.462 0.00 0.00 43.13 3.85
1981 2117 6.259550 TCGTTTGTCTAAACTACTACTCCC 57.740 41.667 0.00 0.00 43.13 4.30
1982 2118 6.006449 TCGTTTGTCTAAACTACTACTCCCT 58.994 40.000 0.00 0.00 43.13 4.20
1983 2119 6.150140 TCGTTTGTCTAAACTACTACTCCCTC 59.850 42.308 0.00 0.00 43.13 4.30
1984 2120 6.150809 CGTTTGTCTAAACTACTACTCCCTCT 59.849 42.308 0.00 0.00 43.13 3.69
1985 2121 7.314393 GTTTGTCTAAACTACTACTCCCTCTG 58.686 42.308 0.00 0.00 42.26 3.35
1986 2122 4.948621 TGTCTAAACTACTACTCCCTCTGC 59.051 45.833 0.00 0.00 0.00 4.26
1987 2123 4.948621 GTCTAAACTACTACTCCCTCTGCA 59.051 45.833 0.00 0.00 0.00 4.41
1988 2124 4.948621 TCTAAACTACTACTCCCTCTGCAC 59.051 45.833 0.00 0.00 0.00 4.57
1989 2125 2.146920 ACTACTACTCCCTCTGCACC 57.853 55.000 0.00 0.00 0.00 5.01
1990 2126 1.025812 CTACTACTCCCTCTGCACCG 58.974 60.000 0.00 0.00 0.00 4.94
1991 2127 0.330604 TACTACTCCCTCTGCACCGT 59.669 55.000 0.00 0.00 0.00 4.83
1992 2128 0.330604 ACTACTCCCTCTGCACCGTA 59.669 55.000 0.00 0.00 0.00 4.02
1993 2129 1.272313 ACTACTCCCTCTGCACCGTAA 60.272 52.381 0.00 0.00 0.00 3.18
1994 2130 2.032620 CTACTCCCTCTGCACCGTAAT 58.967 52.381 0.00 0.00 0.00 1.89
1995 2131 2.154567 ACTCCCTCTGCACCGTAATA 57.845 50.000 0.00 0.00 0.00 0.98
1996 2132 2.679082 ACTCCCTCTGCACCGTAATAT 58.321 47.619 0.00 0.00 0.00 1.28
1997 2133 3.039011 ACTCCCTCTGCACCGTAATATT 58.961 45.455 0.00 0.00 0.00 1.28
1998 2134 3.454812 ACTCCCTCTGCACCGTAATATTT 59.545 43.478 0.00 0.00 0.00 1.40
1999 2135 3.804036 TCCCTCTGCACCGTAATATTTG 58.196 45.455 0.00 0.00 0.00 2.32
2000 2136 3.452990 TCCCTCTGCACCGTAATATTTGA 59.547 43.478 0.00 0.00 0.00 2.69
2001 2137 3.560068 CCCTCTGCACCGTAATATTTGAC 59.440 47.826 0.00 0.00 0.00 3.18
2002 2138 3.245284 CCTCTGCACCGTAATATTTGACG 59.755 47.826 4.15 4.15 38.79 4.35
2003 2139 2.605818 TCTGCACCGTAATATTTGACGC 59.394 45.455 5.42 0.00 37.75 5.19
2004 2140 2.607635 CTGCACCGTAATATTTGACGCT 59.392 45.455 5.42 0.00 37.75 5.07
2005 2141 2.350192 TGCACCGTAATATTTGACGCTG 59.650 45.455 5.42 4.08 37.75 5.18
2006 2142 2.286184 GCACCGTAATATTTGACGCTGG 60.286 50.000 5.42 0.00 37.75 4.85
2007 2143 3.191669 CACCGTAATATTTGACGCTGGA 58.808 45.455 5.42 0.00 37.75 3.86
2008 2144 3.245284 CACCGTAATATTTGACGCTGGAG 59.755 47.826 5.42 0.00 37.75 3.86
2009 2145 3.118884 ACCGTAATATTTGACGCTGGAGT 60.119 43.478 5.42 0.00 37.75 3.85
2010 2146 4.098349 ACCGTAATATTTGACGCTGGAGTA 59.902 41.667 5.42 0.00 37.75 2.59
2011 2147 4.680110 CCGTAATATTTGACGCTGGAGTAG 59.320 45.833 5.42 0.00 37.75 2.57
2024 2160 4.775058 CTGGAGTAGCTGAGCGTAATAT 57.225 45.455 0.00 0.00 0.00 1.28
2025 2161 5.127693 CTGGAGTAGCTGAGCGTAATATT 57.872 43.478 0.00 0.00 0.00 1.28
2026 2162 5.531122 TGGAGTAGCTGAGCGTAATATTT 57.469 39.130 0.00 0.00 0.00 1.40
2027 2163 5.289595 TGGAGTAGCTGAGCGTAATATTTG 58.710 41.667 0.00 0.00 0.00 2.32
2028 2164 5.163447 TGGAGTAGCTGAGCGTAATATTTGT 60.163 40.000 0.00 0.00 0.00 2.83
2029 2165 5.402867 GGAGTAGCTGAGCGTAATATTTGTC 59.597 44.000 0.00 0.00 0.00 3.18
2030 2166 4.976731 AGTAGCTGAGCGTAATATTTGTCG 59.023 41.667 0.00 0.00 0.00 4.35
2036 2172 3.505449 GCGTAATATTTGTCGCTGGAG 57.495 47.619 18.22 0.00 44.28 3.86
2037 2173 2.864343 GCGTAATATTTGTCGCTGGAGT 59.136 45.455 18.22 0.00 44.28 3.85
2038 2174 4.046462 GCGTAATATTTGTCGCTGGAGTA 58.954 43.478 18.22 0.00 44.28 2.59
2039 2175 4.148348 GCGTAATATTTGTCGCTGGAGTAG 59.852 45.833 18.22 0.00 44.28 2.57
2072 2208 5.577860 GCTACTCCAGCGACAAATATTAC 57.422 43.478 0.00 0.00 41.37 1.89
2073 2209 4.148348 GCTACTCCAGCGACAAATATTACG 59.852 45.833 0.00 0.00 41.37 3.18
2074 2210 3.454375 ACTCCAGCGACAAATATTACGG 58.546 45.455 10.14 0.00 0.00 4.02
2075 2211 3.118884 ACTCCAGCGACAAATATTACGGT 60.119 43.478 7.95 7.95 36.95 4.83
2076 2212 4.098349 ACTCCAGCGACAAATATTACGGTA 59.902 41.667 11.69 0.00 35.19 4.02
2077 2213 4.362279 TCCAGCGACAAATATTACGGTAC 58.638 43.478 11.69 0.00 35.19 3.34
2078 2214 4.114073 CCAGCGACAAATATTACGGTACA 58.886 43.478 11.69 0.00 35.19 2.90
2079 2215 4.208460 CCAGCGACAAATATTACGGTACAG 59.792 45.833 11.69 0.00 35.19 2.74
2080 2216 5.038683 CAGCGACAAATATTACGGTACAGA 58.961 41.667 0.00 0.00 35.19 3.41
2081 2217 5.173312 CAGCGACAAATATTACGGTACAGAG 59.827 44.000 0.00 0.00 35.19 3.35
2082 2218 4.443394 GCGACAAATATTACGGTACAGAGG 59.557 45.833 0.00 0.00 0.00 3.69
2083 2219 4.980434 CGACAAATATTACGGTACAGAGGG 59.020 45.833 0.00 0.00 0.00 4.30
2084 2220 5.221106 CGACAAATATTACGGTACAGAGGGA 60.221 44.000 0.00 0.00 0.00 4.20
2085 2221 6.158023 ACAAATATTACGGTACAGAGGGAG 57.842 41.667 0.00 0.00 0.00 4.30
2086 2222 5.659971 ACAAATATTACGGTACAGAGGGAGT 59.340 40.000 0.00 0.00 0.00 3.85
2087 2223 6.835488 ACAAATATTACGGTACAGAGGGAGTA 59.165 38.462 0.00 0.00 0.00 2.59
2408 2545 6.366332 AGAAGTAGAACGTGCAAAGTATCAAG 59.634 38.462 0.00 0.00 0.00 3.02
2418 2555 5.007136 GTGCAAAGTATCAAGTCAGCCTATC 59.993 44.000 0.00 0.00 0.00 2.08
2504 2641 8.404000 AGAATTGTGATATTTCATTGAGACTGC 58.596 33.333 0.00 0.00 33.56 4.40
3107 3257 3.660501 ACAGACACTGTTAAGATCGCA 57.339 42.857 0.00 0.00 42.59 5.10
3117 3267 5.594725 ACTGTTAAGATCGCATCTCCTTCTA 59.405 40.000 0.08 0.00 39.08 2.10
3132 3282 9.323985 CATCTCCTTCTAAAAACTATGGAAGAG 57.676 37.037 0.00 0.00 36.48 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.601217 GCCTTAGTTTCATAACTGAGAGAAATA 57.399 33.333 10.34 0.00 45.84 1.40
5 6 8.325046 AGCCTTAGTTTCATAACTGAGAGAAAT 58.675 33.333 10.34 0.00 45.84 2.17
6 7 7.680730 AGCCTTAGTTTCATAACTGAGAGAAA 58.319 34.615 10.34 0.00 45.84 2.52
7 8 7.246171 AGCCTTAGTTTCATAACTGAGAGAA 57.754 36.000 10.34 0.00 45.84 2.87
8 9 6.859112 AGCCTTAGTTTCATAACTGAGAGA 57.141 37.500 10.34 0.00 45.84 3.10
9 10 8.417106 TGATAGCCTTAGTTTCATAACTGAGAG 58.583 37.037 10.34 3.82 45.84 3.20
10 11 8.306313 TGATAGCCTTAGTTTCATAACTGAGA 57.694 34.615 10.34 0.00 45.84 3.27
11 12 8.948631 TTGATAGCCTTAGTTTCATAACTGAG 57.051 34.615 0.00 0.00 44.22 3.35
12 13 9.547753 GATTGATAGCCTTAGTTTCATAACTGA 57.452 33.333 0.00 0.00 44.22 3.41
13 14 8.778358 GGATTGATAGCCTTAGTTTCATAACTG 58.222 37.037 0.00 0.00 44.22 3.16
14 15 8.494433 TGGATTGATAGCCTTAGTTTCATAACT 58.506 33.333 0.00 0.00 46.18 2.24
15 16 8.677148 TGGATTGATAGCCTTAGTTTCATAAC 57.323 34.615 0.00 0.00 34.36 1.89
16 17 8.494433 ACTGGATTGATAGCCTTAGTTTCATAA 58.506 33.333 0.00 0.00 0.00 1.90
17 18 8.034313 ACTGGATTGATAGCCTTAGTTTCATA 57.966 34.615 0.00 0.00 0.00 2.15
18 19 6.904626 ACTGGATTGATAGCCTTAGTTTCAT 58.095 36.000 0.00 0.00 0.00 2.57
19 20 6.313519 ACTGGATTGATAGCCTTAGTTTCA 57.686 37.500 0.00 0.00 0.00 2.69
20 21 6.931840 CCTACTGGATTGATAGCCTTAGTTTC 59.068 42.308 0.00 0.00 34.57 2.78
21 22 6.615726 TCCTACTGGATTGATAGCCTTAGTTT 59.384 38.462 0.00 0.00 37.46 2.66
22 23 6.143915 TCCTACTGGATTGATAGCCTTAGTT 58.856 40.000 0.00 0.00 37.46 2.24
23 24 5.716979 TCCTACTGGATTGATAGCCTTAGT 58.283 41.667 0.00 0.00 37.46 2.24
24 25 6.013379 TCTCCTACTGGATTGATAGCCTTAG 58.987 44.000 0.00 0.00 42.29 2.18
25 26 5.965486 TCTCCTACTGGATTGATAGCCTTA 58.035 41.667 0.00 0.00 42.29 2.69
26 27 4.820775 TCTCCTACTGGATTGATAGCCTT 58.179 43.478 0.00 0.00 42.29 4.35
27 28 4.477536 TCTCCTACTGGATTGATAGCCT 57.522 45.455 0.00 0.00 42.29 4.58
28 29 4.262678 GGTTCTCCTACTGGATTGATAGCC 60.263 50.000 0.00 0.00 42.29 3.93
29 30 4.345257 TGGTTCTCCTACTGGATTGATAGC 59.655 45.833 0.00 0.00 42.29 2.97
30 31 6.485830 TTGGTTCTCCTACTGGATTGATAG 57.514 41.667 0.00 0.00 42.29 2.08
31 32 5.163301 GCTTGGTTCTCCTACTGGATTGATA 60.163 44.000 0.00 0.00 42.29 2.15
32 33 4.384647 GCTTGGTTCTCCTACTGGATTGAT 60.385 45.833 0.00 0.00 42.29 2.57
33 34 3.055094 GCTTGGTTCTCCTACTGGATTGA 60.055 47.826 0.00 0.00 42.29 2.57
34 35 3.274288 GCTTGGTTCTCCTACTGGATTG 58.726 50.000 0.00 0.00 42.29 2.67
35 36 2.912956 TGCTTGGTTCTCCTACTGGATT 59.087 45.455 0.00 0.00 42.29 3.01
36 37 2.551270 TGCTTGGTTCTCCTACTGGAT 58.449 47.619 0.00 0.00 42.29 3.41
37 38 2.024176 TGCTTGGTTCTCCTACTGGA 57.976 50.000 0.00 0.00 40.69 3.86
38 39 2.427506 GTTGCTTGGTTCTCCTACTGG 58.572 52.381 0.00 0.00 34.23 4.00
39 40 2.069273 CGTTGCTTGGTTCTCCTACTG 58.931 52.381 0.00 0.00 34.23 2.74
40 41 1.968493 TCGTTGCTTGGTTCTCCTACT 59.032 47.619 0.00 0.00 34.23 2.57
41 42 2.067013 GTCGTTGCTTGGTTCTCCTAC 58.933 52.381 0.00 0.00 34.23 3.18
42 43 1.968493 AGTCGTTGCTTGGTTCTCCTA 59.032 47.619 0.00 0.00 34.23 2.94
43 44 0.759346 AGTCGTTGCTTGGTTCTCCT 59.241 50.000 0.00 0.00 34.23 3.69
44 45 1.149148 GAGTCGTTGCTTGGTTCTCC 58.851 55.000 0.00 0.00 0.00 3.71
45 46 0.784778 CGAGTCGTTGCTTGGTTCTC 59.215 55.000 3.82 0.00 0.00 2.87
46 47 0.104304 ACGAGTCGTTGCTTGGTTCT 59.896 50.000 13.56 0.00 36.35 3.01
47 48 0.232303 CACGAGTCGTTGCTTGGTTC 59.768 55.000 17.16 0.00 38.32 3.62
48 49 0.179094 TCACGAGTCGTTGCTTGGTT 60.179 50.000 17.16 0.00 38.32 3.67
49 50 0.179094 TTCACGAGTCGTTGCTTGGT 60.179 50.000 17.16 0.00 38.32 3.67
50 51 0.232303 GTTCACGAGTCGTTGCTTGG 59.768 55.000 17.16 3.55 38.32 3.61
51 52 0.927537 TGTTCACGAGTCGTTGCTTG 59.072 50.000 17.16 4.44 38.32 4.01
52 53 1.792949 GATGTTCACGAGTCGTTGCTT 59.207 47.619 17.16 7.17 38.32 3.91
53 54 1.269569 TGATGTTCACGAGTCGTTGCT 60.270 47.619 17.16 0.00 38.32 3.91
54 55 1.136611 GTGATGTTCACGAGTCGTTGC 60.137 52.381 17.16 9.53 38.32 4.17
55 56 2.837337 GTGATGTTCACGAGTCGTTG 57.163 50.000 17.16 11.79 38.32 4.10
64 65 1.308047 TGTGTGCAGGTGATGTTCAC 58.692 50.000 0.00 0.00 46.23 3.18
65 66 1.948834 CTTGTGTGCAGGTGATGTTCA 59.051 47.619 0.00 0.00 0.00 3.18
66 67 1.335324 GCTTGTGTGCAGGTGATGTTC 60.335 52.381 0.00 0.00 0.00 3.18
67 68 0.670162 GCTTGTGTGCAGGTGATGTT 59.330 50.000 0.00 0.00 0.00 2.71
68 69 0.466007 TGCTTGTGTGCAGGTGATGT 60.466 50.000 0.00 0.00 38.12 3.06
69 70 0.669619 TTGCTTGTGTGCAGGTGATG 59.330 50.000 0.00 0.00 44.27 3.07
70 71 0.670162 GTTGCTTGTGTGCAGGTGAT 59.330 50.000 0.00 0.00 44.27 3.06
71 72 0.679321 TGTTGCTTGTGTGCAGGTGA 60.679 50.000 0.00 0.00 44.27 4.02
72 73 0.526096 GTGTTGCTTGTGTGCAGGTG 60.526 55.000 0.00 0.00 44.27 4.00
73 74 0.964860 TGTGTTGCTTGTGTGCAGGT 60.965 50.000 0.00 0.00 44.27 4.00
74 75 0.386476 ATGTGTTGCTTGTGTGCAGG 59.614 50.000 0.00 0.00 44.27 4.85
75 76 2.291465 AGTATGTGTTGCTTGTGTGCAG 59.709 45.455 0.00 0.00 44.27 4.41
76 77 2.296792 AGTATGTGTTGCTTGTGTGCA 58.703 42.857 0.00 0.00 41.65 4.57
77 78 3.044986 CAAGTATGTGTTGCTTGTGTGC 58.955 45.455 0.00 0.00 41.56 4.57
78 79 3.044986 GCAAGTATGTGTTGCTTGTGTG 58.955 45.455 0.58 0.00 46.36 3.82
79 80 3.354089 GCAAGTATGTGTTGCTTGTGT 57.646 42.857 0.58 0.00 46.36 3.72
86 87 3.380142 GTTGGGTTGCAAGTATGTGTTG 58.620 45.455 0.00 0.00 0.00 3.33
87 88 2.034053 CGTTGGGTTGCAAGTATGTGTT 59.966 45.455 0.00 0.00 0.00 3.32
88 89 1.606668 CGTTGGGTTGCAAGTATGTGT 59.393 47.619 0.00 0.00 0.00 3.72
89 90 1.665735 GCGTTGGGTTGCAAGTATGTG 60.666 52.381 0.00 0.00 0.00 3.21
90 91 0.596082 GCGTTGGGTTGCAAGTATGT 59.404 50.000 0.00 0.00 0.00 2.29
91 92 0.454285 CGCGTTGGGTTGCAAGTATG 60.454 55.000 0.00 0.00 0.00 2.39
92 93 0.604243 TCGCGTTGGGTTGCAAGTAT 60.604 50.000 5.77 0.00 0.00 2.12
93 94 0.814410 TTCGCGTTGGGTTGCAAGTA 60.814 50.000 5.77 0.00 0.00 2.24
94 95 2.115911 TTCGCGTTGGGTTGCAAGT 61.116 52.632 5.77 0.00 0.00 3.16
95 96 1.657181 GTTCGCGTTGGGTTGCAAG 60.657 57.895 5.77 0.00 0.00 4.01
96 97 1.934220 TTGTTCGCGTTGGGTTGCAA 61.934 50.000 5.77 0.00 0.00 4.08
97 98 2.329678 CTTGTTCGCGTTGGGTTGCA 62.330 55.000 5.77 0.00 0.00 4.08
98 99 1.657181 CTTGTTCGCGTTGGGTTGC 60.657 57.895 5.77 0.00 0.00 4.17
99 100 1.008995 CCTTGTTCGCGTTGGGTTG 60.009 57.895 5.77 0.00 0.00 3.77
100 101 2.190841 CCCTTGTTCGCGTTGGGTT 61.191 57.895 5.77 0.00 33.49 4.11
101 102 2.593436 CCCTTGTTCGCGTTGGGT 60.593 61.111 5.77 0.00 33.49 4.51
102 103 3.361977 CCCCTTGTTCGCGTTGGG 61.362 66.667 5.77 11.41 37.68 4.12
103 104 2.190841 AACCCCTTGTTCGCGTTGG 61.191 57.895 5.77 2.32 28.45 3.77
104 105 1.008995 CAACCCCTTGTTCGCGTTG 60.009 57.895 5.77 0.00 34.00 4.10
105 106 1.441732 GACAACCCCTTGTTCGCGTT 61.442 55.000 5.77 0.00 40.93 4.84
106 107 1.890510 GACAACCCCTTGTTCGCGT 60.891 57.895 5.77 0.00 40.93 6.01
107 108 1.440938 TTGACAACCCCTTGTTCGCG 61.441 55.000 0.00 0.00 40.93 5.87
108 109 0.958822 ATTGACAACCCCTTGTTCGC 59.041 50.000 0.00 0.00 40.93 4.70
109 110 1.539827 GGATTGACAACCCCTTGTTCG 59.460 52.381 0.00 0.00 40.93 3.95
110 111 2.876581 AGGATTGACAACCCCTTGTTC 58.123 47.619 0.00 0.00 40.93 3.18
111 112 3.230976 GAAGGATTGACAACCCCTTGTT 58.769 45.455 21.74 0.16 40.93 2.83
112 113 2.176798 TGAAGGATTGACAACCCCTTGT 59.823 45.455 21.74 5.68 43.71 3.16
113 114 2.558359 GTGAAGGATTGACAACCCCTTG 59.442 50.000 21.74 0.00 38.97 3.61
114 115 2.814097 CGTGAAGGATTGACAACCCCTT 60.814 50.000 18.51 18.51 41.34 3.95
115 116 1.271379 CGTGAAGGATTGACAACCCCT 60.271 52.381 0.00 0.00 28.80 4.79
116 117 1.165270 CGTGAAGGATTGACAACCCC 58.835 55.000 0.00 0.00 28.80 4.95
117 118 1.165270 CCGTGAAGGATTGACAACCC 58.835 55.000 0.00 0.00 45.00 4.11
118 119 1.892209 ACCGTGAAGGATTGACAACC 58.108 50.000 0.00 0.00 45.00 3.77
119 120 3.120786 CGTAACCGTGAAGGATTGACAAC 60.121 47.826 0.00 0.00 45.00 3.32
120 121 3.061322 CGTAACCGTGAAGGATTGACAA 58.939 45.455 0.00 0.00 45.00 3.18
121 122 2.296752 TCGTAACCGTGAAGGATTGACA 59.703 45.455 0.00 0.00 45.00 3.58
122 123 2.921754 CTCGTAACCGTGAAGGATTGAC 59.078 50.000 0.00 0.00 45.00 3.18
123 124 2.559668 ACTCGTAACCGTGAAGGATTGA 59.440 45.455 0.00 0.00 45.00 2.57
124 125 2.955614 ACTCGTAACCGTGAAGGATTG 58.044 47.619 0.00 0.00 45.00 2.67
125 126 4.460382 TCTTACTCGTAACCGTGAAGGATT 59.540 41.667 0.00 0.00 45.00 3.01
126 127 4.012374 TCTTACTCGTAACCGTGAAGGAT 58.988 43.478 0.00 0.00 45.00 3.24
127 128 3.411446 TCTTACTCGTAACCGTGAAGGA 58.589 45.455 0.00 0.00 45.00 3.36
129 130 7.801547 TTTAATCTTACTCGTAACCGTGAAG 57.198 36.000 0.00 0.00 35.01 3.02
130 131 8.649841 CAATTTAATCTTACTCGTAACCGTGAA 58.350 33.333 0.00 0.00 35.01 3.18
131 132 7.814107 ACAATTTAATCTTACTCGTAACCGTGA 59.186 33.333 0.00 0.00 35.01 4.35
132 133 7.956558 ACAATTTAATCTTACTCGTAACCGTG 58.043 34.615 0.00 0.00 35.01 4.94
133 134 9.807649 ATACAATTTAATCTTACTCGTAACCGT 57.192 29.630 0.00 0.00 35.01 4.83
198 199 8.992073 CCTTGCTGCAGTTTTCTTTTATTTATT 58.008 29.630 16.64 0.00 0.00 1.40
199 200 8.150296 ACCTTGCTGCAGTTTTCTTTTATTTAT 58.850 29.630 16.64 0.00 0.00 1.40
200 201 7.496747 ACCTTGCTGCAGTTTTCTTTTATTTA 58.503 30.769 16.64 0.00 0.00 1.40
201 202 6.348498 ACCTTGCTGCAGTTTTCTTTTATTT 58.652 32.000 16.64 0.00 0.00 1.40
202 203 5.917462 ACCTTGCTGCAGTTTTCTTTTATT 58.083 33.333 16.64 0.00 0.00 1.40
203 204 5.535753 ACCTTGCTGCAGTTTTCTTTTAT 57.464 34.783 16.64 0.00 0.00 1.40
204 205 6.648879 ATACCTTGCTGCAGTTTTCTTTTA 57.351 33.333 16.64 0.00 0.00 1.52
205 206 3.893326 ACCTTGCTGCAGTTTTCTTTT 57.107 38.095 16.64 0.00 0.00 2.27
206 207 5.535753 AATACCTTGCTGCAGTTTTCTTT 57.464 34.783 16.64 0.00 0.00 2.52
207 208 5.535753 AAATACCTTGCTGCAGTTTTCTT 57.464 34.783 16.64 0.00 0.00 2.52
208 209 5.535753 AAAATACCTTGCTGCAGTTTTCT 57.464 34.783 16.64 0.00 0.00 2.52
209 210 5.050159 CCAAAAATACCTTGCTGCAGTTTTC 60.050 40.000 16.64 0.00 0.00 2.29
210 211 4.815846 CCAAAAATACCTTGCTGCAGTTTT 59.184 37.500 16.64 9.19 0.00 2.43
211 212 4.141733 ACCAAAAATACCTTGCTGCAGTTT 60.142 37.500 16.64 2.87 0.00 2.66
212 213 3.387699 ACCAAAAATACCTTGCTGCAGTT 59.612 39.130 16.64 0.00 0.00 3.16
213 214 2.965147 ACCAAAAATACCTTGCTGCAGT 59.035 40.909 16.64 0.62 0.00 4.40
214 215 3.665745 ACCAAAAATACCTTGCTGCAG 57.334 42.857 10.11 10.11 0.00 4.41
215 216 4.414337 AAACCAAAAATACCTTGCTGCA 57.586 36.364 0.00 0.00 0.00 4.41
216 217 6.852858 TTAAAACCAAAAATACCTTGCTGC 57.147 33.333 0.00 0.00 0.00 5.25
239 240 8.730948 CCCCCTGATCCATCTTTTATCATATAT 58.269 37.037 0.00 0.00 0.00 0.86
240 241 7.366823 GCCCCCTGATCCATCTTTTATCATATA 60.367 40.741 0.00 0.00 0.00 0.86
241 242 6.581881 GCCCCCTGATCCATCTTTTATCATAT 60.582 42.308 0.00 0.00 0.00 1.78
242 243 5.281193 GCCCCCTGATCCATCTTTTATCATA 60.281 44.000 0.00 0.00 0.00 2.15
243 244 4.509843 GCCCCCTGATCCATCTTTTATCAT 60.510 45.833 0.00 0.00 0.00 2.45
244 245 3.181429 GCCCCCTGATCCATCTTTTATCA 60.181 47.826 0.00 0.00 0.00 2.15
245 246 3.425659 GCCCCCTGATCCATCTTTTATC 58.574 50.000 0.00 0.00 0.00 1.75
246 247 2.110721 GGCCCCCTGATCCATCTTTTAT 59.889 50.000 0.00 0.00 0.00 1.40
247 248 1.499007 GGCCCCCTGATCCATCTTTTA 59.501 52.381 0.00 0.00 0.00 1.52
248 249 0.262876 GGCCCCCTGATCCATCTTTT 59.737 55.000 0.00 0.00 0.00 2.27
249 250 0.925720 TGGCCCCCTGATCCATCTTT 60.926 55.000 0.00 0.00 0.00 2.52
250 251 0.703758 ATGGCCCCCTGATCCATCTT 60.704 55.000 0.00 0.00 35.85 2.40
251 252 0.196888 TATGGCCCCCTGATCCATCT 59.803 55.000 0.00 0.00 40.71 2.90
252 253 0.622665 CTATGGCCCCCTGATCCATC 59.377 60.000 0.00 0.00 40.71 3.51
253 254 0.103715 ACTATGGCCCCCTGATCCAT 60.104 55.000 0.00 0.00 42.70 3.41
254 255 0.328450 AACTATGGCCCCCTGATCCA 60.328 55.000 0.00 0.00 0.00 3.41
255 256 0.853530 AAACTATGGCCCCCTGATCC 59.146 55.000 0.00 0.00 0.00 3.36
256 257 2.091885 TGAAAACTATGGCCCCCTGATC 60.092 50.000 0.00 0.00 0.00 2.92
257 258 1.929494 TGAAAACTATGGCCCCCTGAT 59.071 47.619 0.00 0.00 0.00 2.90
258 259 1.005450 GTGAAAACTATGGCCCCCTGA 59.995 52.381 0.00 0.00 0.00 3.86
259 260 1.005924 AGTGAAAACTATGGCCCCCTG 59.994 52.381 0.00 0.00 0.00 4.45
260 261 1.382914 AGTGAAAACTATGGCCCCCT 58.617 50.000 0.00 0.00 0.00 4.79
261 262 2.508300 TCTAGTGAAAACTATGGCCCCC 59.492 50.000 0.00 0.00 0.00 5.40
262 263 3.433740 CCTCTAGTGAAAACTATGGCCCC 60.434 52.174 0.00 0.00 0.00 5.80
263 264 3.809905 CCTCTAGTGAAAACTATGGCCC 58.190 50.000 0.00 0.00 0.00 5.80
264 265 3.118223 AGCCTCTAGTGAAAACTATGGCC 60.118 47.826 18.33 0.00 39.91 5.36
265 266 4.143986 AGCCTCTAGTGAAAACTATGGC 57.856 45.455 16.03 16.03 39.64 4.40
266 267 5.983540 AGAAGCCTCTAGTGAAAACTATGG 58.016 41.667 0.00 0.00 0.00 2.74
281 282 5.181748 TGCTATTTTCAAGAGAGAAGCCTC 58.818 41.667 0.00 0.00 39.72 4.70
282 283 5.171339 TGCTATTTTCAAGAGAGAAGCCT 57.829 39.130 0.00 0.00 0.00 4.58
283 284 6.540189 TGTATGCTATTTTCAAGAGAGAAGCC 59.460 38.462 0.00 0.00 0.00 4.35
284 285 7.279758 ACTGTATGCTATTTTCAAGAGAGAAGC 59.720 37.037 0.00 0.00 0.00 3.86
285 286 8.602328 CACTGTATGCTATTTTCAAGAGAGAAG 58.398 37.037 0.00 0.00 0.00 2.85
286 287 7.550551 CCACTGTATGCTATTTTCAAGAGAGAA 59.449 37.037 0.00 0.00 0.00 2.87
287 288 7.044181 CCACTGTATGCTATTTTCAAGAGAGA 58.956 38.462 0.00 0.00 0.00 3.10
288 289 6.259608 CCCACTGTATGCTATTTTCAAGAGAG 59.740 42.308 0.00 0.00 0.00 3.20
289 290 6.115446 CCCACTGTATGCTATTTTCAAGAGA 58.885 40.000 0.00 0.00 0.00 3.10
290 291 5.882557 ACCCACTGTATGCTATTTTCAAGAG 59.117 40.000 0.00 0.00 0.00 2.85
291 292 5.815581 ACCCACTGTATGCTATTTTCAAGA 58.184 37.500 0.00 0.00 0.00 3.02
292 293 7.120579 TGTTACCCACTGTATGCTATTTTCAAG 59.879 37.037 0.00 0.00 0.00 3.02
293 294 6.943146 TGTTACCCACTGTATGCTATTTTCAA 59.057 34.615 0.00 0.00 0.00 2.69
294 295 6.373216 GTGTTACCCACTGTATGCTATTTTCA 59.627 38.462 0.00 0.00 41.11 2.69
295 296 6.373216 TGTGTTACCCACTGTATGCTATTTTC 59.627 38.462 0.00 0.00 44.81 2.29
296 297 6.242396 TGTGTTACCCACTGTATGCTATTTT 58.758 36.000 0.00 0.00 44.81 1.82
297 298 5.811190 TGTGTTACCCACTGTATGCTATTT 58.189 37.500 0.00 0.00 44.81 1.40
298 299 5.429681 TGTGTTACCCACTGTATGCTATT 57.570 39.130 0.00 0.00 44.81 1.73
299 300 5.630415 ATGTGTTACCCACTGTATGCTAT 57.370 39.130 0.00 0.00 44.81 2.97
300 301 5.429681 AATGTGTTACCCACTGTATGCTA 57.570 39.130 0.00 0.00 44.81 3.49
301 302 4.301072 AATGTGTTACCCACTGTATGCT 57.699 40.909 0.00 0.00 44.81 3.79
302 303 5.064707 CAGTAATGTGTTACCCACTGTATGC 59.935 44.000 0.00 0.00 44.81 3.14
303 304 6.170506 ACAGTAATGTGTTACCCACTGTATG 58.829 40.000 0.00 0.00 44.81 2.39
304 305 6.368779 ACAGTAATGTGTTACCCACTGTAT 57.631 37.500 0.00 0.00 44.81 2.29
305 306 5.811796 ACAGTAATGTGTTACCCACTGTA 57.188 39.130 0.00 0.00 44.81 2.74
306 307 4.699925 ACAGTAATGTGTTACCCACTGT 57.300 40.909 0.00 0.00 44.81 3.55
307 308 4.215399 CCAACAGTAATGTGTTACCCACTG 59.785 45.833 0.00 0.00 44.81 3.66
308 309 4.103469 TCCAACAGTAATGTGTTACCCACT 59.897 41.667 0.00 0.00 44.81 4.00
309 310 4.214758 GTCCAACAGTAATGTGTTACCCAC 59.785 45.833 0.00 0.00 40.88 4.61
310 311 4.391155 GTCCAACAGTAATGTGTTACCCA 58.609 43.478 0.00 0.00 40.88 4.51
311 312 3.754850 GGTCCAACAGTAATGTGTTACCC 59.245 47.826 0.00 0.00 40.88 3.69
312 313 4.391155 TGGTCCAACAGTAATGTGTTACC 58.609 43.478 11.99 11.99 40.88 2.85
313 314 6.205853 TCAATGGTCCAACAGTAATGTGTTAC 59.794 38.462 0.00 0.00 38.65 2.50
314 315 6.299922 TCAATGGTCCAACAGTAATGTGTTA 58.700 36.000 0.00 0.00 38.65 2.41
315 316 5.136828 TCAATGGTCCAACAGTAATGTGTT 58.863 37.500 0.00 0.00 41.47 3.32
316 317 4.724399 TCAATGGTCCAACAGTAATGTGT 58.276 39.130 0.00 0.00 0.00 3.72
317 318 5.902613 ATCAATGGTCCAACAGTAATGTG 57.097 39.130 0.00 0.00 0.00 3.21
318 319 6.957631 TCTATCAATGGTCCAACAGTAATGT 58.042 36.000 0.00 0.00 0.00 2.71
319 320 7.864108 TTCTATCAATGGTCCAACAGTAATG 57.136 36.000 0.00 0.00 0.00 1.90
320 321 8.877864 TTTTCTATCAATGGTCCAACAGTAAT 57.122 30.769 0.00 0.00 0.00 1.89
321 322 7.942341 ACTTTTCTATCAATGGTCCAACAGTAA 59.058 33.333 0.00 0.00 0.00 2.24
322 323 7.458397 ACTTTTCTATCAATGGTCCAACAGTA 58.542 34.615 0.00 0.00 0.00 2.74
323 324 6.306987 ACTTTTCTATCAATGGTCCAACAGT 58.693 36.000 0.00 0.00 0.00 3.55
324 325 6.824305 ACTTTTCTATCAATGGTCCAACAG 57.176 37.500 0.00 0.00 0.00 3.16
325 326 8.698973 TTTACTTTTCTATCAATGGTCCAACA 57.301 30.769 0.00 0.00 0.00 3.33
356 357 9.588096 GGAGTTAAATTTAGGGGATATTGTCAT 57.412 33.333 0.00 0.00 0.00 3.06
357 358 8.002459 GGGAGTTAAATTTAGGGGATATTGTCA 58.998 37.037 0.00 0.00 0.00 3.58
358 359 8.002459 TGGGAGTTAAATTTAGGGGATATTGTC 58.998 37.037 0.00 0.00 0.00 3.18
359 360 7.889178 TGGGAGTTAAATTTAGGGGATATTGT 58.111 34.615 0.00 0.00 0.00 2.71
360 361 8.776061 TTGGGAGTTAAATTTAGGGGATATTG 57.224 34.615 0.00 0.00 0.00 1.90
361 362 9.967559 AATTGGGAGTTAAATTTAGGGGATATT 57.032 29.630 0.00 0.00 0.00 1.28
363 364 9.871175 GTAATTGGGAGTTAAATTTAGGGGATA 57.129 33.333 0.00 0.00 0.00 2.59
416 424 8.136563 TGGGGTGTTTTTCTTTAGTAAAAAGT 57.863 30.769 0.00 0.00 36.70 2.66
437 445 9.925545 TGATATGGAGATATAATTGAAATGGGG 57.074 33.333 0.00 0.00 0.00 4.96
993 1003 4.500887 CCTCCTCGCCTTTGATCGTAATAA 60.501 45.833 0.00 0.00 0.00 1.40
994 1004 3.005472 CCTCCTCGCCTTTGATCGTAATA 59.995 47.826 0.00 0.00 0.00 0.98
995 1005 2.224066 CCTCCTCGCCTTTGATCGTAAT 60.224 50.000 0.00 0.00 0.00 1.89
1004 1014 0.325272 GGTTTCTCCTCCTCGCCTTT 59.675 55.000 0.00 0.00 0.00 3.11
1104 1114 1.596603 TGACGACGAAGAGTGGTACA 58.403 50.000 0.00 0.00 41.96 2.90
1177 1208 0.248702 GAGACCAGATCCGAACGCTC 60.249 60.000 0.00 0.00 0.00 5.03
1178 1209 1.668101 GGAGACCAGATCCGAACGCT 61.668 60.000 0.00 0.00 0.00 5.07
1185 1216 2.316108 GGAGAGAAGGAGACCAGATCC 58.684 57.143 0.00 0.00 37.07 3.36
1194 1225 3.891366 GAGAGATGAAGGGAGAGAAGGAG 59.109 52.174 0.00 0.00 0.00 3.69
1197 1228 4.098349 CAGTGAGAGATGAAGGGAGAGAAG 59.902 50.000 0.00 0.00 0.00 2.85
1201 1232 3.746792 TCAGTGAGAGATGAAGGGAGA 57.253 47.619 0.00 0.00 0.00 3.71
1217 1248 1.413445 GGATGATCAGCTCAGCTCAGT 59.587 52.381 11.34 0.00 40.23 3.41
1366 1402 8.418597 AGTAAATCACGGGATAGAAGCTTATA 57.581 34.615 0.00 2.77 32.09 0.98
1367 1403 7.304497 AGTAAATCACGGGATAGAAGCTTAT 57.696 36.000 0.00 0.00 32.09 1.73
1497 1543 3.707102 GGTATCAAGCTAAGAGGTGAGGT 59.293 47.826 0.00 0.00 0.00 3.85
1498 1544 3.706594 TGGTATCAAGCTAAGAGGTGAGG 59.293 47.826 0.00 0.00 0.00 3.86
1499 1545 5.510520 GGATGGTATCAAGCTAAGAGGTGAG 60.511 48.000 0.00 0.00 0.00 3.51
1500 1546 4.345257 GGATGGTATCAAGCTAAGAGGTGA 59.655 45.833 0.00 0.00 0.00 4.02
1501 1547 4.101585 TGGATGGTATCAAGCTAAGAGGTG 59.898 45.833 0.00 0.00 0.00 4.00
1502 1548 4.298626 TGGATGGTATCAAGCTAAGAGGT 58.701 43.478 0.00 0.00 0.00 3.85
1557 1603 4.574828 AGTAAACTCGCTGTGATTGTTTGT 59.425 37.500 14.94 4.09 33.63 2.83
1566 1612 2.604914 CTGGCATAGTAAACTCGCTGTG 59.395 50.000 0.00 0.00 0.00 3.66
1693 1746 6.027749 GGGTTCATTGTGTTATTCGATGTTC 58.972 40.000 0.00 0.00 0.00 3.18
1705 1758 6.721208 AGTCTTGAAATATGGGTTCATTGTGT 59.279 34.615 0.00 0.00 35.03 3.72
1759 1812 5.726980 TGCATCTTTATGGCTTCAAAACT 57.273 34.783 0.00 0.00 33.38 2.66
1781 1834 4.630069 CGTATGTGCTTTACTGCCTTACTT 59.370 41.667 0.00 0.00 0.00 2.24
1977 2113 3.753294 AATATTACGGTGCAGAGGGAG 57.247 47.619 0.00 0.00 0.00 4.30
1978 2114 3.452990 TCAAATATTACGGTGCAGAGGGA 59.547 43.478 0.00 0.00 0.00 4.20
1979 2115 3.560068 GTCAAATATTACGGTGCAGAGGG 59.440 47.826 0.00 0.00 0.00 4.30
1980 2116 3.245284 CGTCAAATATTACGGTGCAGAGG 59.755 47.826 3.32 0.00 35.51 3.69
1981 2117 3.302480 GCGTCAAATATTACGGTGCAGAG 60.302 47.826 11.62 0.00 39.46 3.35
1982 2118 2.605818 GCGTCAAATATTACGGTGCAGA 59.394 45.455 11.62 0.00 39.46 4.26
1983 2119 2.607635 AGCGTCAAATATTACGGTGCAG 59.392 45.455 13.14 0.00 46.83 4.41
1984 2120 2.623535 AGCGTCAAATATTACGGTGCA 58.376 42.857 13.14 0.00 46.83 4.57
1988 2124 3.454375 ACTCCAGCGTCAAATATTACGG 58.546 45.455 11.62 0.00 39.46 4.02
1989 2125 4.148348 GCTACTCCAGCGTCAAATATTACG 59.852 45.833 6.43 6.43 41.37 3.18
1990 2126 5.577860 GCTACTCCAGCGTCAAATATTAC 57.422 43.478 0.00 0.00 41.37 1.89
2003 2139 4.775058 ATATTACGCTCAGCTACTCCAG 57.225 45.455 0.00 0.00 0.00 3.86
2004 2140 5.163447 ACAAATATTACGCTCAGCTACTCCA 60.163 40.000 0.00 0.00 0.00 3.86
2005 2141 5.290386 ACAAATATTACGCTCAGCTACTCC 58.710 41.667 0.00 0.00 0.00 3.85
2006 2142 5.115773 CGACAAATATTACGCTCAGCTACTC 59.884 44.000 0.00 0.00 0.00 2.59
2007 2143 4.976731 CGACAAATATTACGCTCAGCTACT 59.023 41.667 0.00 0.00 0.00 2.57
2008 2144 4.375105 GCGACAAATATTACGCTCAGCTAC 60.375 45.833 19.71 0.00 46.06 3.58
2009 2145 3.734231 GCGACAAATATTACGCTCAGCTA 59.266 43.478 19.71 0.00 46.06 3.32
2010 2146 2.540101 GCGACAAATATTACGCTCAGCT 59.460 45.455 19.71 0.00 46.06 4.24
2011 2147 2.892613 GCGACAAATATTACGCTCAGC 58.107 47.619 19.71 0.00 46.06 4.26
2017 2153 4.148348 GCTACTCCAGCGACAAATATTACG 59.852 45.833 0.00 0.00 41.37 3.18
2018 2154 5.577860 GCTACTCCAGCGACAAATATTAC 57.422 43.478 0.00 0.00 41.37 1.89
2051 2187 4.680110 CCGTAATATTTGTCGCTGGAGTAG 59.320 45.833 0.00 0.00 0.00 2.57
2052 2188 4.098349 ACCGTAATATTTGTCGCTGGAGTA 59.902 41.667 0.00 0.00 0.00 2.59
2053 2189 3.118884 ACCGTAATATTTGTCGCTGGAGT 60.119 43.478 0.00 0.00 0.00 3.85
2054 2190 3.454375 ACCGTAATATTTGTCGCTGGAG 58.546 45.455 0.00 0.00 0.00 3.86
2055 2191 3.530265 ACCGTAATATTTGTCGCTGGA 57.470 42.857 0.00 0.00 0.00 3.86
2056 2192 4.114073 TGTACCGTAATATTTGTCGCTGG 58.886 43.478 0.00 0.00 0.00 4.85
2057 2193 5.038683 TCTGTACCGTAATATTTGTCGCTG 58.961 41.667 0.00 0.00 0.00 5.18
2058 2194 5.252969 TCTGTACCGTAATATTTGTCGCT 57.747 39.130 0.00 0.00 0.00 4.93
2059 2195 4.443394 CCTCTGTACCGTAATATTTGTCGC 59.557 45.833 0.00 0.00 0.00 5.19
2060 2196 4.980434 CCCTCTGTACCGTAATATTTGTCG 59.020 45.833 0.00 0.00 0.00 4.35
2061 2197 6.152932 TCCCTCTGTACCGTAATATTTGTC 57.847 41.667 0.00 0.00 0.00 3.18
2062 2198 5.659971 ACTCCCTCTGTACCGTAATATTTGT 59.340 40.000 0.00 0.00 0.00 2.83
2063 2199 6.158023 ACTCCCTCTGTACCGTAATATTTG 57.842 41.667 0.00 0.00 0.00 2.32
2064 2200 7.902920 TTACTCCCTCTGTACCGTAATATTT 57.097 36.000 0.00 0.00 0.00 1.40
2065 2201 7.902920 TTTACTCCCTCTGTACCGTAATATT 57.097 36.000 0.00 0.00 0.00 1.28
2066 2202 7.902920 TTTTACTCCCTCTGTACCGTAATAT 57.097 36.000 0.00 0.00 0.00 1.28
2067 2203 7.685155 GCATTTTACTCCCTCTGTACCGTAATA 60.685 40.741 0.00 0.00 0.00 0.98
2068 2204 6.579865 CATTTTACTCCCTCTGTACCGTAAT 58.420 40.000 0.00 0.00 0.00 1.89
2069 2205 5.625197 GCATTTTACTCCCTCTGTACCGTAA 60.625 44.000 0.00 0.00 0.00 3.18
2070 2206 4.142093 GCATTTTACTCCCTCTGTACCGTA 60.142 45.833 0.00 0.00 0.00 4.02
2071 2207 3.369157 GCATTTTACTCCCTCTGTACCGT 60.369 47.826 0.00 0.00 0.00 4.83
2072 2208 3.195661 GCATTTTACTCCCTCTGTACCG 58.804 50.000 0.00 0.00 0.00 4.02
2073 2209 4.192317 CTGCATTTTACTCCCTCTGTACC 58.808 47.826 0.00 0.00 0.00 3.34
2074 2210 4.833390 ACTGCATTTTACTCCCTCTGTAC 58.167 43.478 0.00 0.00 0.00 2.90
2075 2211 4.081087 GGACTGCATTTTACTCCCTCTGTA 60.081 45.833 0.00 0.00 0.00 2.74
2076 2212 3.307762 GGACTGCATTTTACTCCCTCTGT 60.308 47.826 0.00 0.00 0.00 3.41
2077 2213 3.054802 AGGACTGCATTTTACTCCCTCTG 60.055 47.826 0.00 0.00 0.00 3.35
2078 2214 3.185455 AGGACTGCATTTTACTCCCTCT 58.815 45.455 0.00 0.00 0.00 3.69
2079 2215 3.636153 AGGACTGCATTTTACTCCCTC 57.364 47.619 0.00 0.00 0.00 4.30
2080 2216 3.118223 GCTAGGACTGCATTTTACTCCCT 60.118 47.826 0.00 0.00 0.00 4.20
2081 2217 3.118223 AGCTAGGACTGCATTTTACTCCC 60.118 47.826 0.00 0.00 0.00 4.30
2082 2218 4.143986 AGCTAGGACTGCATTTTACTCC 57.856 45.455 0.00 0.00 0.00 3.85
2083 2219 6.819146 AGTTTAGCTAGGACTGCATTTTACTC 59.181 38.462 10.13 0.00 0.00 2.59
2084 2220 6.595716 CAGTTTAGCTAGGACTGCATTTTACT 59.404 38.462 19.90 0.00 34.97 2.24
2085 2221 6.371825 ACAGTTTAGCTAGGACTGCATTTTAC 59.628 38.462 26.59 0.00 43.44 2.01
2086 2222 6.472887 ACAGTTTAGCTAGGACTGCATTTTA 58.527 36.000 26.59 0.00 43.44 1.52
2087 2223 5.316987 ACAGTTTAGCTAGGACTGCATTTT 58.683 37.500 26.59 12.93 43.44 1.82
2341 2477 9.890629 GGATAATTATGCATATACAACTGAGGA 57.109 33.333 7.36 0.00 0.00 3.71
2418 2555 5.382618 AATAGCTTTCAGCCTTCAAACAG 57.617 39.130 0.00 0.00 43.77 3.16
3107 3257 9.273137 TCTCTTCCATAGTTTTTAGAAGGAGAT 57.727 33.333 0.00 0.00 35.68 2.75
3147 3297 6.294176 GGCGGATCAAATGCTATTTTCTACAT 60.294 38.462 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.