Multiple sequence alignment - TraesCS7D01G231400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G231400 chr7D 100.000 3212 0 0 1 3212 192446546 192449757 0.000000e+00 5932
1 TraesCS7D01G231400 chr6B 89.709 1856 183 5 1009 2857 123417444 123415590 0.000000e+00 2362
2 TraesCS7D01G231400 chr6B 88.717 1808 166 20 1009 2808 123206246 123204469 0.000000e+00 2174
3 TraesCS7D01G231400 chr6A 86.961 1879 208 23 1013 2881 67055456 67053605 0.000000e+00 2078
4 TraesCS7D01G231400 chr6A 90.464 1573 144 4 1009 2577 66821456 66819886 0.000000e+00 2069
5 TraesCS7D01G231400 chr6A 86.747 1826 201 21 1009 2828 66379401 66381191 0.000000e+00 1993
6 TraesCS7D01G231400 chr6A 86.198 1862 222 16 1009 2861 66814123 66812288 0.000000e+00 1982
7 TraesCS7D01G231400 chr6A 87.641 1594 189 6 1009 2598 66373467 66375056 0.000000e+00 1845
8 TraesCS7D01G231400 chr6D 86.339 1852 219 17 1015 2857 48156342 48158168 0.000000e+00 1988
9 TraesCS7D01G231400 chr6D 87.349 1573 193 4 1012 2579 48468809 48467238 0.000000e+00 1797
10 TraesCS7D01G231400 chr6D 82.992 488 55 9 10 471 48086786 48087271 1.780000e-112 416
11 TraesCS7D01G231400 chr6D 86.571 350 28 9 2533 2881 48090698 48091029 5.060000e-98 368
12 TraesCS7D01G231400 chr4D 93.750 144 8 1 2878 3021 439129799 439129941 6.980000e-52 215
13 TraesCS7D01G231400 chr2D 96.850 127 4 0 2880 3006 650879912 650880038 2.510000e-51 213
14 TraesCS7D01G231400 chr2D 95.420 131 6 0 2879 3009 561025621 561025751 3.250000e-50 209
15 TraesCS7D01G231400 chr2D 90.132 152 13 2 2860 3009 420809412 420809261 2.530000e-46 196
16 TraesCS7D01G231400 chr3D 95.455 132 6 0 2878 3009 365000959 365000828 9.030000e-51 211
17 TraesCS7D01G231400 chr3D 96.094 128 5 0 2880 3007 612269563 612269690 3.250000e-50 209
18 TraesCS7D01G231400 chr2A 95.455 132 6 0 2879 3010 735403297 735403166 9.030000e-51 211
19 TraesCS7D01G231400 chr1A 95.420 131 6 0 2879 3009 539330577 539330707 3.250000e-50 209
20 TraesCS7D01G231400 chr3A 91.724 145 11 1 2866 3010 159530468 159530325 1.950000e-47 200


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G231400 chr7D 192446546 192449757 3211 False 5932 5932 100.0000 1 3212 1 chr7D.!!$F1 3211
1 TraesCS7D01G231400 chr6B 123415590 123417444 1854 True 2362 2362 89.7090 1009 2857 1 chr6B.!!$R2 1848
2 TraesCS7D01G231400 chr6B 123204469 123206246 1777 True 2174 2174 88.7170 1009 2808 1 chr6B.!!$R1 1799
3 TraesCS7D01G231400 chr6A 67053605 67055456 1851 True 2078 2078 86.9610 1013 2881 1 chr6A.!!$R3 1868
4 TraesCS7D01G231400 chr6A 66819886 66821456 1570 True 2069 2069 90.4640 1009 2577 1 chr6A.!!$R2 1568
5 TraesCS7D01G231400 chr6A 66379401 66381191 1790 False 1993 1993 86.7470 1009 2828 1 chr6A.!!$F2 1819
6 TraesCS7D01G231400 chr6A 66812288 66814123 1835 True 1982 1982 86.1980 1009 2861 1 chr6A.!!$R1 1852
7 TraesCS7D01G231400 chr6A 66373467 66375056 1589 False 1845 1845 87.6410 1009 2598 1 chr6A.!!$F1 1589
8 TraesCS7D01G231400 chr6D 48156342 48158168 1826 False 1988 1988 86.3390 1015 2857 1 chr6D.!!$F1 1842
9 TraesCS7D01G231400 chr6D 48467238 48468809 1571 True 1797 1797 87.3490 1012 2579 1 chr6D.!!$R1 1567
10 TraesCS7D01G231400 chr6D 48086786 48091029 4243 False 392 416 84.7815 10 2881 2 chr6D.!!$F2 2871

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
897 2348 0.243907 GTCGTTGCCTCTGTGCTCTA 59.756 55.0 0.0 0.0 0.0 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2274 3745 0.668706 CCATCGCGTCATCCATCCTC 60.669 60.0 5.77 0.0 0.0 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 7.325097 CGATAAACACTTGGTTGTTGGTTATTC 59.675 37.037 0.00 0.00 39.70 1.75
101 102 4.757657 AGACTGCACTCACTAGATATACGG 59.242 45.833 0.00 0.00 0.00 4.02
171 191 6.387041 AATAGTCAGACGTATCCGAAATGA 57.613 37.500 0.00 0.00 37.88 2.57
214 234 4.438797 CGAATCGAAACCGATACACGTATT 59.561 41.667 0.00 0.00 45.06 1.89
216 236 3.724091 CGAAACCGATACACGTATTCG 57.276 47.619 0.00 0.00 44.52 3.34
220 240 8.297318 ATCGAAACCGATACACGTATTCGTATC 61.297 40.741 18.09 11.74 45.09 2.24
230 250 2.915463 CGTATTCGTATCGAGGCAATCC 59.085 50.000 0.00 0.00 37.14 3.01
232 252 2.971660 TTCGTATCGAGGCAATCCAA 57.028 45.000 0.00 0.00 37.14 3.53
243 263 4.567159 CGAGGCAATCCAAGTCTACTTTAC 59.433 45.833 0.00 0.00 33.11 2.01
258 278 7.119846 AGTCTACTTTACTTGCATCCAACATTC 59.880 37.037 0.00 0.00 0.00 2.67
262 282 2.880443 ACTTGCATCCAACATTCTGGT 58.120 42.857 0.00 0.00 37.74 4.00
280 300 0.250513 GTCCCCTGGAAGTACTGCAG 59.749 60.000 13.48 13.48 42.93 4.41
282 302 1.448540 CCCTGGAAGTACTGCAGCG 60.449 63.158 15.27 0.00 41.99 5.18
283 303 2.103042 CCTGGAAGTACTGCAGCGC 61.103 63.158 15.27 0.00 41.99 5.92
285 305 2.820037 GGAAGTACTGCAGCGCCC 60.820 66.667 15.27 4.53 0.00 6.13
302 322 1.134580 GCCCGGGTTACTCTAGGAAAC 60.135 57.143 24.63 0.00 0.00 2.78
303 323 1.135721 CCCGGGTTACTCTAGGAAACG 59.864 57.143 14.18 0.00 0.00 3.60
305 325 2.232208 CCGGGTTACTCTAGGAAACGTT 59.768 50.000 0.00 0.00 0.00 3.99
309 329 6.101997 CGGGTTACTCTAGGAAACGTTAATT 58.898 40.000 0.00 0.00 0.00 1.40
310 330 6.591448 CGGGTTACTCTAGGAAACGTTAATTT 59.409 38.462 0.00 0.00 0.00 1.82
311 331 7.118245 CGGGTTACTCTAGGAAACGTTAATTTT 59.882 37.037 0.00 0.00 0.00 1.82
431 457 8.829612 GTGATCAATTTTTGAAAACAGGAACAT 58.170 29.630 0.00 0.00 43.95 2.71
471 497 8.785329 AATAACTTTTGGAAAACACACACATT 57.215 26.923 0.00 0.00 0.00 2.71
472 498 9.877178 AATAACTTTTGGAAAACACACACATTA 57.123 25.926 0.00 0.00 0.00 1.90
474 500 7.769272 ACTTTTGGAAAACACACACATTATG 57.231 32.000 0.00 0.00 0.00 1.90
475 501 7.551585 ACTTTTGGAAAACACACACATTATGA 58.448 30.769 0.00 0.00 0.00 2.15
477 503 8.954950 TTTTGGAAAACACACACATTATGAAT 57.045 26.923 0.00 0.00 0.00 2.57
478 504 8.954950 TTTGGAAAACACACACATTATGAATT 57.045 26.923 0.00 0.00 0.00 2.17
479 505 8.954950 TTGGAAAACACACACATTATGAATTT 57.045 26.923 0.00 0.00 0.00 1.82
481 507 8.824781 TGGAAAACACACACATTATGAATTTTG 58.175 29.630 0.00 0.00 0.00 2.44
482 508 9.039870 GGAAAACACACACATTATGAATTTTGA 57.960 29.630 0.00 0.00 0.00 2.69
485 511 9.598517 AAACACACACATTATGAATTTTGAACT 57.401 25.926 0.00 0.00 0.00 3.01
488 550 9.467258 CACACACATTATGAATTTTGAACTCTT 57.533 29.630 0.00 0.00 0.00 2.85
780 860 7.412563 GGGGAAAGAACGAAAAACAAAGAAAAG 60.413 37.037 0.00 0.00 0.00 2.27
782 862 6.403333 AAGAACGAAAAACAAAGAAAAGCC 57.597 33.333 0.00 0.00 0.00 4.35
785 865 4.816392 ACGAAAAACAAAGAAAAGCCTGT 58.184 34.783 0.00 0.00 0.00 4.00
845 925 2.184167 CGCACCGGAACCACAAACT 61.184 57.895 9.46 0.00 0.00 2.66
847 927 0.872388 GCACCGGAACCACAAACTAG 59.128 55.000 9.46 0.00 0.00 2.57
848 928 1.519408 CACCGGAACCACAAACTAGG 58.481 55.000 9.46 0.00 0.00 3.02
849 929 1.071071 CACCGGAACCACAAACTAGGA 59.929 52.381 9.46 0.00 0.00 2.94
850 930 1.770061 ACCGGAACCACAAACTAGGAA 59.230 47.619 9.46 0.00 0.00 3.36
852 932 2.038033 CCGGAACCACAAACTAGGAAGA 59.962 50.000 0.00 0.00 0.00 2.87
853 933 3.495453 CCGGAACCACAAACTAGGAAGAA 60.495 47.826 0.00 0.00 0.00 2.52
855 935 4.715713 GGAACCACAAACTAGGAAGAAGT 58.284 43.478 0.00 0.00 0.00 3.01
860 951 3.430218 CACAAACTAGGAAGAAGTGAGCG 59.570 47.826 0.00 0.00 0.00 5.03
869 960 1.515304 GAAGTGAGCGAGCGAGACC 60.515 63.158 0.00 0.00 0.00 3.85
889 980 2.584391 GGACCTGGTCGTTGCCTCT 61.584 63.158 19.98 0.00 32.65 3.69
890 981 1.374758 GACCTGGTCGTTGCCTCTG 60.375 63.158 11.71 0.00 0.00 3.35
891 982 2.100879 GACCTGGTCGTTGCCTCTGT 62.101 60.000 11.71 0.00 0.00 3.41
892 983 1.669115 CCTGGTCGTTGCCTCTGTG 60.669 63.158 0.00 0.00 0.00 3.66
896 2347 1.005630 GTCGTTGCCTCTGTGCTCT 60.006 57.895 0.00 0.00 0.00 4.09
897 2348 0.243907 GTCGTTGCCTCTGTGCTCTA 59.756 55.000 0.00 0.00 0.00 2.43
900 2351 1.135915 CGTTGCCTCTGTGCTCTATCT 59.864 52.381 0.00 0.00 0.00 1.98
902 2353 0.463204 TGCCTCTGTGCTCTATCTGC 59.537 55.000 0.00 0.00 0.00 4.26
920 2371 2.689034 CCTCCTCCCACCAGGACC 60.689 72.222 0.00 0.00 40.93 4.46
931 2382 4.394712 CAGGACCGGCACACCCTC 62.395 72.222 0.00 0.00 0.00 4.30
934 2385 4.083862 GACCGGCACACCCTCCTC 62.084 72.222 0.00 0.00 0.00 3.71
938 2389 4.035102 GGCACACCCTCCTCCCAC 62.035 72.222 0.00 0.00 0.00 4.61
939 2390 4.035102 GCACACCCTCCTCCCACC 62.035 72.222 0.00 0.00 0.00 4.61
940 2391 2.529136 CACACCCTCCTCCCACCA 60.529 66.667 0.00 0.00 0.00 4.17
941 2392 2.529389 ACACCCTCCTCCCACCAC 60.529 66.667 0.00 0.00 0.00 4.16
942 2393 3.330720 CACCCTCCTCCCACCACC 61.331 72.222 0.00 0.00 0.00 4.61
943 2394 4.677151 ACCCTCCTCCCACCACCC 62.677 72.222 0.00 0.00 0.00 4.61
944 2395 4.675303 CCCTCCTCCCACCACCCA 62.675 72.222 0.00 0.00 0.00 4.51
945 2396 3.330720 CCTCCTCCCACCACCCAC 61.331 72.222 0.00 0.00 0.00 4.61
946 2397 3.330720 CTCCTCCCACCACCCACC 61.331 72.222 0.00 0.00 0.00 4.61
947 2398 4.194497 TCCTCCCACCACCCACCA 62.194 66.667 0.00 0.00 0.00 4.17
948 2399 3.650950 CCTCCCACCACCCACCAG 61.651 72.222 0.00 0.00 0.00 4.00
949 2400 3.650950 CTCCCACCACCCACCAGG 61.651 72.222 0.00 0.00 43.78 4.45
950 2401 4.194497 TCCCACCACCCACCAGGA 62.194 66.667 0.00 0.00 39.89 3.86
951 2402 3.966543 CCCACCACCCACCAGGAC 61.967 72.222 0.00 0.00 39.89 3.85
952 2403 3.966543 CCACCACCCACCAGGACC 61.967 72.222 0.00 0.00 39.89 4.46
955 2406 2.854032 CCACCCACCAGGACCTGT 60.854 66.667 20.24 5.80 39.89 4.00
957 2408 1.536676 CACCCACCAGGACCTGTTT 59.463 57.895 20.24 3.86 39.89 2.83
963 2414 0.258774 ACCAGGACCTGTTTGTTGCT 59.741 50.000 20.24 0.00 0.00 3.91
992 2443 4.389576 CCGCCGCTGCAGAAACAC 62.390 66.667 20.43 0.00 37.32 3.32
994 2445 4.389576 GCCGCTGCAGAAACACGG 62.390 66.667 20.43 20.86 46.50 4.94
997 2448 3.345808 GCTGCAGAAACACGGCGA 61.346 61.111 20.43 0.00 42.31 5.54
998 2449 2.551270 CTGCAGAAACACGGCGAC 59.449 61.111 16.62 0.00 42.31 5.19
999 2450 2.202946 TGCAGAAACACGGCGACA 60.203 55.556 16.62 0.00 42.31 4.35
1000 2451 1.771073 CTGCAGAAACACGGCGACAA 61.771 55.000 16.62 0.00 42.31 3.18
1001 2452 1.163420 TGCAGAAACACGGCGACAAT 61.163 50.000 16.62 0.00 42.31 2.71
1002 2453 0.725784 GCAGAAACACGGCGACAATG 60.726 55.000 16.62 3.21 0.00 2.82
1004 2455 0.865769 AGAAACACGGCGACAATGTC 59.134 50.000 16.62 2.75 0.00 3.06
1005 2456 0.584396 GAAACACGGCGACAATGTCA 59.416 50.000 16.62 0.00 32.09 3.58
1116 2581 2.667318 CGCGCACCAACTGTTCGAT 61.667 57.895 8.75 0.00 35.51 3.59
1125 2590 4.154015 CACCAACTGTTCGATGAAATGCTA 59.846 41.667 0.00 0.00 0.00 3.49
1163 2628 0.664224 TCAGTACGTGCACTCAACGA 59.336 50.000 16.19 3.15 0.00 3.85
1172 2637 3.059868 CGTGCACTCAACGACTTATTTGT 60.060 43.478 16.19 0.00 0.00 2.83
1212 2677 1.448540 CTCCACCATCTGCACCGAC 60.449 63.158 0.00 0.00 0.00 4.79
1215 2680 2.994995 ACCATCTGCACCGACGGA 60.995 61.111 23.38 0.00 0.00 4.69
1415 2883 6.992715 GTCATTACCTACAACAGCCTATTCAT 59.007 38.462 0.00 0.00 0.00 2.57
1437 2905 1.893062 CCTCTGTGACATGAGGCGA 59.107 57.895 14.92 0.00 42.62 5.54
1483 2951 0.979665 CCATAGGATGCCCGATGACT 59.020 55.000 6.20 0.00 45.12 3.41
1525 2993 6.166984 ACTCAGTGATTCTCAAGAGTTTCA 57.833 37.500 0.00 0.00 39.47 2.69
1721 3189 7.612065 TTGTGCCTACTAAGGTGACATATAT 57.388 36.000 0.00 0.00 45.64 0.86
1766 3234 1.202976 AGCAAGAGCAATGGACAAGGT 60.203 47.619 0.00 0.00 45.49 3.50
1831 3299 5.221322 CCAGAAGCTGTGACATATAGTAGCA 60.221 44.000 0.00 0.00 32.85 3.49
1885 3353 3.990318 AAGAAGTTGCTAGGTTGTTGC 57.010 42.857 0.00 0.00 0.00 4.17
1903 3371 4.523943 TGTTGCAAGTAATGAGAAGCCAAT 59.476 37.500 0.00 0.00 0.00 3.16
1906 3374 4.523943 TGCAAGTAATGAGAAGCCAATGTT 59.476 37.500 0.00 0.00 0.00 2.71
1944 3412 1.281287 ACTTGCAGCTCAGTCATGGAT 59.719 47.619 0.00 0.00 0.00 3.41
2068 3536 3.576982 CCATGGGTACGCTATAGAAGGAA 59.423 47.826 11.59 0.00 0.00 3.36
2223 3694 2.573462 AGACATGTAGCAGGGTGTGAAT 59.427 45.455 0.00 0.00 0.00 2.57
2286 3757 1.739750 AGATGGGGAGGATGGATGAC 58.260 55.000 0.00 0.00 0.00 3.06
2411 3882 7.169158 TGAAAGCCAAGGAATTTATTACCAG 57.831 36.000 0.00 0.00 0.00 4.00
2449 3920 0.396435 TCATCATAGGCCGCGGAAAT 59.604 50.000 33.48 15.73 0.00 2.17
2580 4052 9.606631 ATGGAGAAATCATTTAGAGTACTTGAC 57.393 33.333 0.00 0.00 0.00 3.18
2640 4112 2.727916 GCAACACCGTAACTTAGCATGC 60.728 50.000 10.51 10.51 0.00 4.06
2641 4113 2.465860 ACACCGTAACTTAGCATGCA 57.534 45.000 21.98 2.77 0.00 3.96
2671 4146 7.656948 GCTCTCAGTCTTGATATGCTCTAAATT 59.343 37.037 0.00 0.00 31.68 1.82
2698 4173 4.202121 TGTTATCCTGATTACTCCAGCGTC 60.202 45.833 0.00 0.00 0.00 5.19
2752 4227 7.081976 CCTTATGGTTGTTAGTTGCTGTTTAC 58.918 38.462 0.00 0.00 0.00 2.01
2760 4235 5.987347 TGTTAGTTGCTGTTTACTGGTAGTC 59.013 40.000 0.00 0.00 0.00 2.59
2779 4255 2.429610 GTCGGGTAGATTGCCTAGTTCA 59.570 50.000 0.00 0.00 0.00 3.18
2780 4256 3.069729 GTCGGGTAGATTGCCTAGTTCAT 59.930 47.826 0.00 0.00 0.00 2.57
2837 4315 1.002868 CCTGGCTGAGAGGTGTTGG 60.003 63.158 0.00 0.00 0.00 3.77
2881 4359 7.712639 TCCAAGATTGCTCTTCATACTTCATAC 59.287 37.037 0.00 0.00 39.78 2.39
2882 4360 7.714377 CCAAGATTGCTCTTCATACTTCATACT 59.286 37.037 0.00 0.00 39.78 2.12
2883 4361 8.763356 CAAGATTGCTCTTCATACTTCATACTC 58.237 37.037 0.00 0.00 39.78 2.59
2884 4362 7.441017 AGATTGCTCTTCATACTTCATACTCC 58.559 38.462 0.00 0.00 0.00 3.85
2885 4363 5.537300 TGCTCTTCATACTTCATACTCCC 57.463 43.478 0.00 0.00 0.00 4.30
2886 4364 5.211973 TGCTCTTCATACTTCATACTCCCT 58.788 41.667 0.00 0.00 0.00 4.20
2887 4365 5.303078 TGCTCTTCATACTTCATACTCCCTC 59.697 44.000 0.00 0.00 0.00 4.30
2888 4366 5.279256 GCTCTTCATACTTCATACTCCCTCC 60.279 48.000 0.00 0.00 0.00 4.30
2889 4367 4.827835 TCTTCATACTTCATACTCCCTCCG 59.172 45.833 0.00 0.00 0.00 4.63
2890 4368 4.180377 TCATACTTCATACTCCCTCCGT 57.820 45.455 0.00 0.00 0.00 4.69
2891 4369 4.543689 TCATACTTCATACTCCCTCCGTT 58.456 43.478 0.00 0.00 0.00 4.44
2892 4370 4.583489 TCATACTTCATACTCCCTCCGTTC 59.417 45.833 0.00 0.00 0.00 3.95
2893 4371 2.108970 ACTTCATACTCCCTCCGTTCC 58.891 52.381 0.00 0.00 0.00 3.62
2894 4372 2.108168 CTTCATACTCCCTCCGTTCCA 58.892 52.381 0.00 0.00 0.00 3.53
2895 4373 2.241281 TCATACTCCCTCCGTTCCAA 57.759 50.000 0.00 0.00 0.00 3.53
2896 4374 2.542550 TCATACTCCCTCCGTTCCAAA 58.457 47.619 0.00 0.00 0.00 3.28
2897 4375 2.907696 TCATACTCCCTCCGTTCCAAAA 59.092 45.455 0.00 0.00 0.00 2.44
2898 4376 3.521937 TCATACTCCCTCCGTTCCAAAAT 59.478 43.478 0.00 0.00 0.00 1.82
2899 4377 2.971901 ACTCCCTCCGTTCCAAAATT 57.028 45.000 0.00 0.00 0.00 1.82
2900 4378 2.791655 ACTCCCTCCGTTCCAAAATTC 58.208 47.619 0.00 0.00 0.00 2.17
2901 4379 2.375509 ACTCCCTCCGTTCCAAAATTCT 59.624 45.455 0.00 0.00 0.00 2.40
2902 4380 3.181433 ACTCCCTCCGTTCCAAAATTCTT 60.181 43.478 0.00 0.00 0.00 2.52
2903 4381 3.153919 TCCCTCCGTTCCAAAATTCTTG 58.846 45.455 0.00 0.00 0.00 3.02
2904 4382 2.890945 CCCTCCGTTCCAAAATTCTTGT 59.109 45.455 0.00 0.00 0.00 3.16
2905 4383 4.076394 CCCTCCGTTCCAAAATTCTTGTA 58.924 43.478 0.00 0.00 0.00 2.41
2906 4384 4.705023 CCCTCCGTTCCAAAATTCTTGTAT 59.295 41.667 0.00 0.00 0.00 2.29
2907 4385 5.185056 CCCTCCGTTCCAAAATTCTTGTATT 59.815 40.000 0.00 0.00 0.00 1.89
2908 4386 6.376018 CCCTCCGTTCCAAAATTCTTGTATTA 59.624 38.462 0.00 0.00 0.00 0.98
2909 4387 7.415206 CCCTCCGTTCCAAAATTCTTGTATTAG 60.415 40.741 0.00 0.00 0.00 1.73
2910 4388 7.335924 CCTCCGTTCCAAAATTCTTGTATTAGA 59.664 37.037 0.00 0.00 0.00 2.10
2911 4389 8.801882 TCCGTTCCAAAATTCTTGTATTAGAT 57.198 30.769 0.00 0.00 0.00 1.98
2912 4390 9.238368 TCCGTTCCAAAATTCTTGTATTAGATT 57.762 29.630 0.00 0.00 0.00 2.40
2913 4391 9.855021 CCGTTCCAAAATTCTTGTATTAGATTT 57.145 29.630 0.00 0.00 0.00 2.17
2916 4394 9.651913 TTCCAAAATTCTTGTATTAGATTTGCC 57.348 29.630 0.00 0.00 29.17 4.52
2917 4395 9.034800 TCCAAAATTCTTGTATTAGATTTGCCT 57.965 29.630 0.00 0.00 29.17 4.75
2925 4403 9.268268 TCTTGTATTAGATTTGCCTAAATACGG 57.732 33.333 0.00 0.00 36.66 4.02
2926 4404 9.268268 CTTGTATTAGATTTGCCTAAATACGGA 57.732 33.333 0.00 0.00 36.66 4.69
2927 4405 9.787435 TTGTATTAGATTTGCCTAAATACGGAT 57.213 29.630 0.00 0.00 36.66 4.18
2928 4406 9.214957 TGTATTAGATTTGCCTAAATACGGATG 57.785 33.333 0.00 0.00 36.66 3.51
2929 4407 9.216117 GTATTAGATTTGCCTAAATACGGATGT 57.784 33.333 0.00 0.00 36.66 3.06
2931 4409 9.959721 ATTAGATTTGCCTAAATACGGATGTAT 57.040 29.630 0.00 0.00 43.14 2.29
2932 4410 7.907214 AGATTTGCCTAAATACGGATGTATC 57.093 36.000 0.00 0.00 40.42 2.24
2933 4411 7.450074 AGATTTGCCTAAATACGGATGTATCA 58.550 34.615 0.00 0.00 40.42 2.15
2934 4412 7.936847 AGATTTGCCTAAATACGGATGTATCAA 59.063 33.333 0.00 0.00 40.42 2.57
2935 4413 7.490962 TTTGCCTAAATACGGATGTATCAAG 57.509 36.000 0.00 0.00 40.42 3.02
2936 4414 6.169557 TGCCTAAATACGGATGTATCAAGT 57.830 37.500 0.00 0.00 40.42 3.16
2937 4415 6.220930 TGCCTAAATACGGATGTATCAAGTC 58.779 40.000 0.00 0.00 40.42 3.01
2938 4416 6.183360 TGCCTAAATACGGATGTATCAAGTCA 60.183 38.462 0.00 0.00 40.42 3.41
2939 4417 6.145696 GCCTAAATACGGATGTATCAAGTCAC 59.854 42.308 0.00 0.00 40.42 3.67
2940 4418 7.207383 CCTAAATACGGATGTATCAAGTCACA 58.793 38.462 0.00 0.00 40.42 3.58
2941 4419 7.872993 CCTAAATACGGATGTATCAAGTCACAT 59.127 37.037 0.00 0.00 40.42 3.21
2942 4420 9.261180 CTAAATACGGATGTATCAAGTCACATT 57.739 33.333 0.00 0.00 40.42 2.71
2943 4421 8.506168 AAATACGGATGTATCAAGTCACATTT 57.494 30.769 0.00 0.00 40.42 2.32
2944 4422 8.506168 AATACGGATGTATCAAGTCACATTTT 57.494 30.769 0.00 0.00 40.42 1.82
2945 4423 9.607988 AATACGGATGTATCAAGTCACATTTTA 57.392 29.630 0.00 0.00 40.42 1.52
2946 4424 7.539712 ACGGATGTATCAAGTCACATTTTAG 57.460 36.000 0.00 0.00 35.55 1.85
2947 4425 7.103641 ACGGATGTATCAAGTCACATTTTAGT 58.896 34.615 0.00 0.00 35.55 2.24
2948 4426 8.255206 ACGGATGTATCAAGTCACATTTTAGTA 58.745 33.333 0.00 0.00 35.55 1.82
2949 4427 9.261180 CGGATGTATCAAGTCACATTTTAGTAT 57.739 33.333 0.00 0.00 35.55 2.12
2993 4471 9.987272 AGAAAAATCTAAGACAAGAATTTTGGG 57.013 29.630 4.79 0.00 38.23 4.12
2994 4472 9.981114 GAAAAATCTAAGACAAGAATTTTGGGA 57.019 29.630 4.79 0.00 38.23 4.37
2995 4473 9.764363 AAAAATCTAAGACAAGAATTTTGGGAC 57.236 29.630 0.20 0.00 37.26 4.46
2996 4474 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
2997 4475 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
2998 4476 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
2999 4477 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3000 4478 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3001 4479 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
3002 4480 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3003 4481 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
3004 4482 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
3005 4483 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3006 4484 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
3007 4485 2.852714 TTTGGGACGGAGGGAGTATA 57.147 50.000 0.00 0.00 0.00 1.47
3008 4486 3.339713 TTTGGGACGGAGGGAGTATAT 57.660 47.619 0.00 0.00 0.00 0.86
3009 4487 2.304221 TGGGACGGAGGGAGTATATG 57.696 55.000 0.00 0.00 0.00 1.78
3010 4488 1.784593 TGGGACGGAGGGAGTATATGA 59.215 52.381 0.00 0.00 0.00 2.15
3011 4489 2.169330 GGGACGGAGGGAGTATATGAC 58.831 57.143 0.00 0.00 0.00 3.06
3012 4490 1.811359 GGACGGAGGGAGTATATGACG 59.189 57.143 0.00 0.00 0.00 4.35
3013 4491 1.811359 GACGGAGGGAGTATATGACGG 59.189 57.143 0.00 0.00 0.00 4.79
3014 4492 1.422781 ACGGAGGGAGTATATGACGGA 59.577 52.381 0.00 0.00 0.00 4.69
3015 4493 1.811359 CGGAGGGAGTATATGACGGAC 59.189 57.143 0.00 0.00 0.00 4.79
3016 4494 2.812983 CGGAGGGAGTATATGACGGACA 60.813 54.545 0.00 0.00 0.00 4.02
3017 4495 3.228453 GGAGGGAGTATATGACGGACAA 58.772 50.000 0.00 0.00 0.00 3.18
3018 4496 3.833070 GGAGGGAGTATATGACGGACAAT 59.167 47.826 0.00 0.00 0.00 2.71
3019 4497 4.322049 GGAGGGAGTATATGACGGACAATG 60.322 50.000 0.00 0.00 0.00 2.82
3020 4498 3.578716 AGGGAGTATATGACGGACAATGG 59.421 47.826 0.00 0.00 0.00 3.16
3021 4499 3.576982 GGGAGTATATGACGGACAATGGA 59.423 47.826 0.00 0.00 0.00 3.41
3022 4500 4.039973 GGGAGTATATGACGGACAATGGAA 59.960 45.833 0.00 0.00 0.00 3.53
3023 4501 5.230942 GGAGTATATGACGGACAATGGAAG 58.769 45.833 0.00 0.00 0.00 3.46
3024 4502 5.010719 GGAGTATATGACGGACAATGGAAGA 59.989 44.000 0.00 0.00 0.00 2.87
3025 4503 6.090483 AGTATATGACGGACAATGGAAGAG 57.910 41.667 0.00 0.00 0.00 2.85
3026 4504 5.598830 AGTATATGACGGACAATGGAAGAGT 59.401 40.000 0.00 0.00 0.00 3.24
3027 4505 3.703001 ATGACGGACAATGGAAGAGTT 57.297 42.857 0.00 0.00 0.00 3.01
3028 4506 4.819105 ATGACGGACAATGGAAGAGTTA 57.181 40.909 0.00 0.00 0.00 2.24
3029 4507 4.819105 TGACGGACAATGGAAGAGTTAT 57.181 40.909 0.00 0.00 0.00 1.89
3030 4508 4.755411 TGACGGACAATGGAAGAGTTATC 58.245 43.478 0.00 0.00 0.00 1.75
3031 4509 4.466370 TGACGGACAATGGAAGAGTTATCT 59.534 41.667 0.00 0.00 37.39 1.98
3032 4510 5.655090 TGACGGACAATGGAAGAGTTATCTA 59.345 40.000 0.00 0.00 33.45 1.98
3033 4511 6.323996 TGACGGACAATGGAAGAGTTATCTAT 59.676 38.462 0.00 0.00 33.45 1.98
3034 4512 7.125792 ACGGACAATGGAAGAGTTATCTATT 57.874 36.000 0.00 0.00 33.45 1.73
3035 4513 6.986817 ACGGACAATGGAAGAGTTATCTATTG 59.013 38.462 10.00 10.00 45.72 1.90
3036 4514 7.147724 ACGGACAATGGAAGAGTTATCTATTGA 60.148 37.037 16.25 0.00 44.10 2.57
3037 4515 7.875041 CGGACAATGGAAGAGTTATCTATTGAT 59.125 37.037 16.25 0.00 44.10 2.57
3065 4543 3.550437 AACTGAGAGTTGTTGCTGTCT 57.450 42.857 0.00 0.00 37.00 3.41
3066 4544 3.550437 ACTGAGAGTTGTTGCTGTCTT 57.450 42.857 0.00 0.00 31.01 3.01
3067 4545 3.878778 ACTGAGAGTTGTTGCTGTCTTT 58.121 40.909 0.00 0.00 31.01 2.52
3068 4546 3.624861 ACTGAGAGTTGTTGCTGTCTTTG 59.375 43.478 0.00 0.00 31.01 2.77
3069 4547 3.872696 TGAGAGTTGTTGCTGTCTTTGA 58.127 40.909 0.00 0.00 31.01 2.69
3070 4548 4.260985 TGAGAGTTGTTGCTGTCTTTGAA 58.739 39.130 0.00 0.00 31.01 2.69
3071 4549 4.333649 TGAGAGTTGTTGCTGTCTTTGAAG 59.666 41.667 0.00 0.00 31.01 3.02
3072 4550 3.629398 AGAGTTGTTGCTGTCTTTGAAGG 59.371 43.478 0.00 0.00 0.00 3.46
3073 4551 3.620488 AGTTGTTGCTGTCTTTGAAGGA 58.380 40.909 0.00 0.00 0.00 3.36
3074 4552 3.629398 AGTTGTTGCTGTCTTTGAAGGAG 59.371 43.478 0.00 0.00 0.00 3.69
3075 4553 3.558931 TGTTGCTGTCTTTGAAGGAGA 57.441 42.857 0.00 0.00 0.00 3.71
3076 4554 3.884895 TGTTGCTGTCTTTGAAGGAGAA 58.115 40.909 0.00 0.00 0.00 2.87
3077 4555 4.269183 TGTTGCTGTCTTTGAAGGAGAAA 58.731 39.130 0.00 0.00 0.00 2.52
3078 4556 4.336433 TGTTGCTGTCTTTGAAGGAGAAAG 59.664 41.667 0.00 0.00 32.63 2.62
3079 4557 4.422073 TGCTGTCTTTGAAGGAGAAAGA 57.578 40.909 0.00 0.00 37.15 2.52
3080 4558 4.384056 TGCTGTCTTTGAAGGAGAAAGAG 58.616 43.478 0.00 0.00 39.53 2.85
3081 4559 4.101585 TGCTGTCTTTGAAGGAGAAAGAGA 59.898 41.667 0.00 0.00 39.53 3.10
3082 4560 5.059833 GCTGTCTTTGAAGGAGAAAGAGAA 58.940 41.667 0.00 0.00 39.53 2.87
3083 4561 5.049749 GCTGTCTTTGAAGGAGAAAGAGAAC 60.050 44.000 0.00 0.00 39.53 3.01
3084 4562 5.989477 TGTCTTTGAAGGAGAAAGAGAACA 58.011 37.500 0.00 0.00 39.53 3.18
3085 4563 6.414732 TGTCTTTGAAGGAGAAAGAGAACAA 58.585 36.000 0.00 0.00 39.53 2.83
3086 4564 7.056635 TGTCTTTGAAGGAGAAAGAGAACAAT 58.943 34.615 0.00 0.00 39.53 2.71
3087 4565 7.557719 TGTCTTTGAAGGAGAAAGAGAACAATT 59.442 33.333 0.00 0.00 39.53 2.32
3088 4566 8.409371 GTCTTTGAAGGAGAAAGAGAACAATTT 58.591 33.333 0.00 0.00 39.53 1.82
3089 4567 8.624776 TCTTTGAAGGAGAAAGAGAACAATTTC 58.375 33.333 0.00 0.00 35.07 2.17
3090 4568 7.880160 TTGAAGGAGAAAGAGAACAATTTCA 57.120 32.000 0.00 0.00 37.78 2.69
3091 4569 7.264373 TGAAGGAGAAAGAGAACAATTTCAC 57.736 36.000 0.00 0.00 37.78 3.18
3092 4570 7.056635 TGAAGGAGAAAGAGAACAATTTCACT 58.943 34.615 0.00 0.00 37.78 3.41
3093 4571 7.557719 TGAAGGAGAAAGAGAACAATTTCACTT 59.442 33.333 0.00 0.00 42.47 3.16
3100 4578 7.761651 AAGAGAACAATTTCACTTTCTTTGC 57.238 32.000 0.00 0.00 38.95 3.68
3101 4579 6.276091 AGAGAACAATTTCACTTTCTTTGCC 58.724 36.000 0.00 0.00 29.13 4.52
3102 4580 5.976458 AGAACAATTTCACTTTCTTTGCCA 58.024 33.333 0.00 0.00 33.72 4.92
3103 4581 6.585416 AGAACAATTTCACTTTCTTTGCCAT 58.415 32.000 0.00 0.00 33.72 4.40
3104 4582 7.725251 AGAACAATTTCACTTTCTTTGCCATA 58.275 30.769 0.00 0.00 33.72 2.74
3105 4583 8.203485 AGAACAATTTCACTTTCTTTGCCATAA 58.797 29.630 0.00 0.00 33.72 1.90
3106 4584 8.729805 AACAATTTCACTTTCTTTGCCATAAA 57.270 26.923 0.00 0.00 0.00 1.40
3107 4585 8.907222 ACAATTTCACTTTCTTTGCCATAAAT 57.093 26.923 0.00 0.00 0.00 1.40
3108 4586 9.995003 ACAATTTCACTTTCTTTGCCATAAATA 57.005 25.926 0.00 0.00 0.00 1.40
3111 4589 8.514136 TTTCACTTTCTTTGCCATAAATAACG 57.486 30.769 0.00 0.00 0.00 3.18
3112 4590 6.616947 TCACTTTCTTTGCCATAAATAACGG 58.383 36.000 0.00 0.00 0.00 4.44
3113 4591 5.288472 CACTTTCTTTGCCATAAATAACGGC 59.712 40.000 0.00 0.00 46.43 5.68
3117 4595 3.157922 GCCATAAATAACGGCGTGC 57.842 52.632 15.70 6.07 35.79 5.34
3118 4596 0.661020 GCCATAAATAACGGCGTGCT 59.339 50.000 15.70 0.00 35.79 4.40
3119 4597 1.596954 GCCATAAATAACGGCGTGCTG 60.597 52.381 15.70 5.08 35.79 4.41
3120 4598 1.937223 CCATAAATAACGGCGTGCTGA 59.063 47.619 15.70 0.00 0.00 4.26
3121 4599 2.353269 CCATAAATAACGGCGTGCTGAA 59.647 45.455 15.70 0.00 0.00 3.02
3122 4600 3.546020 CCATAAATAACGGCGTGCTGAAG 60.546 47.826 15.70 1.12 0.00 3.02
3123 4601 1.519408 AAATAACGGCGTGCTGAAGT 58.481 45.000 15.70 0.00 0.00 3.01
3124 4602 1.076332 AATAACGGCGTGCTGAAGTC 58.924 50.000 15.70 0.00 0.00 3.01
3125 4603 0.739813 ATAACGGCGTGCTGAAGTCC 60.740 55.000 15.70 0.00 0.00 3.85
3126 4604 2.089887 TAACGGCGTGCTGAAGTCCA 62.090 55.000 15.70 0.00 0.00 4.02
3127 4605 2.664851 CGGCGTGCTGAAGTCCAA 60.665 61.111 0.00 0.00 0.00 3.53
3128 4606 2.250939 CGGCGTGCTGAAGTCCAAA 61.251 57.895 0.00 0.00 0.00 3.28
3129 4607 1.282875 GGCGTGCTGAAGTCCAAAC 59.717 57.895 0.00 0.00 0.00 2.93
3130 4608 1.444119 GGCGTGCTGAAGTCCAAACA 61.444 55.000 0.00 0.00 0.00 2.83
3131 4609 0.040958 GCGTGCTGAAGTCCAAACAG 60.041 55.000 0.00 0.00 35.14 3.16
3132 4610 1.299541 CGTGCTGAAGTCCAAACAGT 58.700 50.000 0.00 0.00 34.60 3.55
3133 4611 2.479837 CGTGCTGAAGTCCAAACAGTA 58.520 47.619 0.00 0.00 34.60 2.74
3134 4612 2.221055 CGTGCTGAAGTCCAAACAGTAC 59.779 50.000 0.00 0.00 41.36 2.73
3135 4613 3.202906 GTGCTGAAGTCCAAACAGTACA 58.797 45.455 0.00 0.00 43.15 2.90
3136 4614 3.625764 GTGCTGAAGTCCAAACAGTACAA 59.374 43.478 0.00 0.00 43.15 2.41
3137 4615 4.275936 GTGCTGAAGTCCAAACAGTACAAT 59.724 41.667 0.00 0.00 43.15 2.71
3138 4616 4.887071 TGCTGAAGTCCAAACAGTACAATT 59.113 37.500 0.00 0.00 34.60 2.32
3139 4617 5.215160 GCTGAAGTCCAAACAGTACAATTG 58.785 41.667 3.24 3.24 34.60 2.32
3140 4618 5.762045 CTGAAGTCCAAACAGTACAATTGG 58.238 41.667 10.83 14.72 43.97 3.16
3141 4619 5.197451 TGAAGTCCAAACAGTACAATTGGT 58.803 37.500 18.24 0.00 43.27 3.67
3142 4620 5.298276 TGAAGTCCAAACAGTACAATTGGTC 59.702 40.000 18.24 14.61 43.27 4.02
3143 4621 4.787551 AGTCCAAACAGTACAATTGGTCA 58.212 39.130 18.24 3.98 43.27 4.02
3144 4622 4.821805 AGTCCAAACAGTACAATTGGTCAG 59.178 41.667 18.24 2.05 43.27 3.51
3145 4623 4.578928 GTCCAAACAGTACAATTGGTCAGT 59.421 41.667 18.24 2.67 43.27 3.41
3146 4624 4.578516 TCCAAACAGTACAATTGGTCAGTG 59.421 41.667 18.24 9.79 43.27 3.66
3147 4625 4.578516 CCAAACAGTACAATTGGTCAGTGA 59.421 41.667 10.83 0.00 38.99 3.41
3148 4626 5.241506 CCAAACAGTACAATTGGTCAGTGAT 59.758 40.000 10.83 0.22 38.99 3.06
3149 4627 6.373779 CAAACAGTACAATTGGTCAGTGATC 58.626 40.000 10.83 0.00 0.00 2.92
3150 4628 4.245660 ACAGTACAATTGGTCAGTGATCG 58.754 43.478 10.83 0.00 0.00 3.69
3151 4629 4.245660 CAGTACAATTGGTCAGTGATCGT 58.754 43.478 10.83 0.00 0.00 3.73
3152 4630 4.091945 CAGTACAATTGGTCAGTGATCGTG 59.908 45.833 10.83 0.00 0.00 4.35
3153 4631 3.401033 ACAATTGGTCAGTGATCGTGA 57.599 42.857 10.83 0.00 0.00 4.35
3154 4632 3.738982 ACAATTGGTCAGTGATCGTGAA 58.261 40.909 10.83 0.00 0.00 3.18
3155 4633 3.748048 ACAATTGGTCAGTGATCGTGAAG 59.252 43.478 10.83 0.00 0.00 3.02
3156 4634 1.795768 TTGGTCAGTGATCGTGAAGC 58.204 50.000 0.00 0.00 0.00 3.86
3157 4635 0.969149 TGGTCAGTGATCGTGAAGCT 59.031 50.000 0.00 0.00 0.00 3.74
3158 4636 1.344438 TGGTCAGTGATCGTGAAGCTT 59.656 47.619 0.00 0.00 0.00 3.74
3159 4637 2.224281 TGGTCAGTGATCGTGAAGCTTT 60.224 45.455 0.00 0.00 0.00 3.51
3160 4638 3.006430 TGGTCAGTGATCGTGAAGCTTTA 59.994 43.478 0.00 0.00 0.00 1.85
3161 4639 3.614616 GGTCAGTGATCGTGAAGCTTTAG 59.385 47.826 0.00 0.00 0.00 1.85
3162 4640 4.238514 GTCAGTGATCGTGAAGCTTTAGT 58.761 43.478 0.00 0.00 0.00 2.24
3163 4641 5.399858 GTCAGTGATCGTGAAGCTTTAGTA 58.600 41.667 0.00 0.00 0.00 1.82
3164 4642 6.037098 GTCAGTGATCGTGAAGCTTTAGTAT 58.963 40.000 0.00 0.00 0.00 2.12
3165 4643 6.531948 GTCAGTGATCGTGAAGCTTTAGTATT 59.468 38.462 0.00 0.00 0.00 1.89
3166 4644 6.531594 TCAGTGATCGTGAAGCTTTAGTATTG 59.468 38.462 0.00 0.00 0.00 1.90
3167 4645 6.531594 CAGTGATCGTGAAGCTTTAGTATTGA 59.468 38.462 0.00 0.00 0.00 2.57
3168 4646 6.754209 AGTGATCGTGAAGCTTTAGTATTGAG 59.246 38.462 0.00 0.00 0.00 3.02
3169 4647 6.752351 GTGATCGTGAAGCTTTAGTATTGAGA 59.248 38.462 0.00 0.00 0.00 3.27
3170 4648 6.752351 TGATCGTGAAGCTTTAGTATTGAGAC 59.248 38.462 0.00 0.00 0.00 3.36
3171 4649 6.020971 TCGTGAAGCTTTAGTATTGAGACA 57.979 37.500 0.00 0.00 0.00 3.41
3172 4650 6.452242 TCGTGAAGCTTTAGTATTGAGACAA 58.548 36.000 0.00 0.00 0.00 3.18
3173 4651 6.926826 TCGTGAAGCTTTAGTATTGAGACAAA 59.073 34.615 0.00 0.00 0.00 2.83
3174 4652 7.602644 TCGTGAAGCTTTAGTATTGAGACAAAT 59.397 33.333 0.00 0.00 0.00 2.32
3175 4653 7.689812 CGTGAAGCTTTAGTATTGAGACAAATG 59.310 37.037 0.00 0.00 0.00 2.32
3176 4654 8.507249 GTGAAGCTTTAGTATTGAGACAAATGT 58.493 33.333 0.00 0.00 0.00 2.71
3177 4655 9.066892 TGAAGCTTTAGTATTGAGACAAATGTT 57.933 29.630 0.00 0.00 0.00 2.71
3178 4656 9.899226 GAAGCTTTAGTATTGAGACAAATGTTT 57.101 29.630 0.00 0.00 0.00 2.83
3180 4658 9.683069 AGCTTTAGTATTGAGACAAATGTTTTG 57.317 29.630 0.00 0.00 0.00 2.44
3181 4659 9.463443 GCTTTAGTATTGAGACAAATGTTTTGT 57.537 29.630 5.37 5.37 34.97 2.83
3201 4679 9.722056 GTTTTGTATGAAGATATTGTTAGCTGG 57.278 33.333 0.00 0.00 0.00 4.85
3202 4680 8.450578 TTTGTATGAAGATATTGTTAGCTGGG 57.549 34.615 0.00 0.00 0.00 4.45
3203 4681 7.136822 TGTATGAAGATATTGTTAGCTGGGT 57.863 36.000 0.00 0.00 0.00 4.51
3204 4682 7.573710 TGTATGAAGATATTGTTAGCTGGGTT 58.426 34.615 0.00 0.00 0.00 4.11
3205 4683 7.715249 TGTATGAAGATATTGTTAGCTGGGTTC 59.285 37.037 0.00 0.00 0.00 3.62
3206 4684 6.313519 TGAAGATATTGTTAGCTGGGTTCT 57.686 37.500 0.00 0.00 0.00 3.01
3207 4685 6.721318 TGAAGATATTGTTAGCTGGGTTCTT 58.279 36.000 0.00 0.00 0.00 2.52
3208 4686 6.823689 TGAAGATATTGTTAGCTGGGTTCTTC 59.176 38.462 0.00 6.11 37.90 2.87
3209 4687 5.685728 AGATATTGTTAGCTGGGTTCTTCC 58.314 41.667 0.00 0.00 0.00 3.46
3210 4688 5.430089 AGATATTGTTAGCTGGGTTCTTCCT 59.570 40.000 0.00 0.00 36.25 3.36
3211 4689 6.615726 AGATATTGTTAGCTGGGTTCTTCCTA 59.384 38.462 0.00 0.00 36.25 2.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 6.931838 ACCAAGTGTTTATCGATCAGTTAGA 58.068 36.000 0.00 0.00 0.00 2.10
4 5 7.117812 ACAACCAAGTGTTTATCGATCAGTTAG 59.882 37.037 0.00 0.00 34.00 2.34
5 6 6.932400 ACAACCAAGTGTTTATCGATCAGTTA 59.068 34.615 0.00 0.00 34.00 2.24
6 7 5.763204 ACAACCAAGTGTTTATCGATCAGTT 59.237 36.000 0.00 0.02 34.00 3.16
7 8 5.305585 ACAACCAAGTGTTTATCGATCAGT 58.694 37.500 0.00 0.00 34.00 3.41
8 9 5.862924 ACAACCAAGTGTTTATCGATCAG 57.137 39.130 0.00 0.00 34.00 2.90
9 10 5.049060 CCAACAACCAAGTGTTTATCGATCA 60.049 40.000 0.00 0.00 39.73 2.92
10 11 5.048991 ACCAACAACCAAGTGTTTATCGATC 60.049 40.000 0.00 0.00 39.73 3.69
11 12 4.825085 ACCAACAACCAAGTGTTTATCGAT 59.175 37.500 2.16 2.16 39.73 3.59
15 16 7.289084 AGGAATAACCAACAACCAAGTGTTTAT 59.711 33.333 0.00 0.00 39.73 1.40
39 40 7.870509 TCTTATTCATGATTCCAACAAGAGG 57.129 36.000 0.00 0.00 0.00 3.69
78 79 4.757657 CCGTATATCTAGTGAGTGCAGTCT 59.242 45.833 21.79 5.84 0.00 3.24
82 83 6.947644 TTTACCGTATATCTAGTGAGTGCA 57.052 37.500 0.00 0.00 0.00 4.57
83 84 7.697291 GCTATTTACCGTATATCTAGTGAGTGC 59.303 40.741 0.00 0.00 0.00 4.40
139 141 7.896894 GGATACGTCTGACTATTTCTGAAAAC 58.103 38.462 6.95 0.00 34.24 2.43
171 191 9.486857 CGATTCGATACTGATACATAAATACGT 57.513 33.333 0.00 0.00 0.00 3.57
214 234 1.754803 ACTTGGATTGCCTCGATACGA 59.245 47.619 0.00 0.00 34.31 3.43
216 236 3.460857 AGACTTGGATTGCCTCGATAC 57.539 47.619 0.00 0.00 34.31 2.24
220 240 2.969628 AGTAGACTTGGATTGCCTCG 57.030 50.000 0.00 0.00 34.31 4.63
232 252 5.865085 TGTTGGATGCAAGTAAAGTAGACT 58.135 37.500 0.00 0.00 0.00 3.24
243 263 2.165030 GGACCAGAATGTTGGATGCAAG 59.835 50.000 0.00 0.00 40.87 4.01
262 282 1.553690 GCTGCAGTACTTCCAGGGGA 61.554 60.000 16.64 0.00 0.00 4.81
280 300 2.416260 CTAGAGTAACCCGGGCGC 59.584 66.667 24.08 11.30 0.00 6.53
282 302 1.134580 GTTTCCTAGAGTAACCCGGGC 60.135 57.143 24.08 3.92 0.00 6.13
283 303 1.135721 CGTTTCCTAGAGTAACCCGGG 59.864 57.143 22.25 22.25 0.00 5.73
285 305 3.582714 AACGTTTCCTAGAGTAACCCG 57.417 47.619 0.00 0.00 0.00 5.28
405 431 8.195617 TGTTCCTGTTTTCAAAAATTGATCAC 57.804 30.769 0.00 0.00 39.84 3.06
413 439 9.712305 TTCAGTTTATGTTCCTGTTTTCAAAAA 57.288 25.926 0.00 0.00 0.00 1.94
525 587 9.877137 GGAATTTTACAAAAATGTTCATGTTCC 57.123 29.630 0.00 0.00 0.00 3.62
610 678 8.145122 GGTTCACAAATACAAAATTTGGTCCTA 58.855 33.333 10.71 0.00 41.80 2.94
612 680 6.989759 AGGTTCACAAATACAAAATTTGGTCC 59.010 34.615 10.71 9.75 41.80 4.46
614 682 8.800370 AAAGGTTCACAAATACAAAATTTGGT 57.200 26.923 10.71 3.18 41.80 3.67
650 730 7.693969 TGTCCATGGTTCAAATTTTTGTTTT 57.306 28.000 12.58 0.00 39.18 2.43
757 837 6.953743 GGCTTTTCTTTGTTTTTCGTTCTTTC 59.046 34.615 0.00 0.00 0.00 2.62
804 884 5.705905 CGGTTTTATCTGGTTTTCTTCCTCT 59.294 40.000 0.00 0.00 0.00 3.69
843 923 1.474879 GCTCGCTCACTTCTTCCTAGT 59.525 52.381 0.00 0.00 0.00 2.57
845 925 0.452184 CGCTCGCTCACTTCTTCCTA 59.548 55.000 0.00 0.00 0.00 2.94
847 927 0.800300 CTCGCTCGCTCACTTCTTCC 60.800 60.000 0.00 0.00 0.00 3.46
848 928 0.169230 TCTCGCTCGCTCACTTCTTC 59.831 55.000 0.00 0.00 0.00 2.87
849 929 0.109504 GTCTCGCTCGCTCACTTCTT 60.110 55.000 0.00 0.00 0.00 2.52
850 930 1.504446 GTCTCGCTCGCTCACTTCT 59.496 57.895 0.00 0.00 0.00 2.85
852 932 2.206515 CTGGTCTCGCTCGCTCACTT 62.207 60.000 0.00 0.00 0.00 3.16
853 933 2.673341 TGGTCTCGCTCGCTCACT 60.673 61.111 0.00 0.00 0.00 3.41
855 935 3.443925 CCTGGTCTCGCTCGCTCA 61.444 66.667 0.00 0.00 0.00 4.26
860 951 2.716017 CCAGGTCCTGGTCTCGCTC 61.716 68.421 27.80 0.00 45.82 5.03
869 960 2.358737 GGCAACGACCAGGTCCTG 60.359 66.667 14.46 12.40 0.00 3.86
889 980 0.031716 AGGAGGGCAGATAGAGCACA 60.032 55.000 0.00 0.00 38.04 4.57
890 981 0.678950 GAGGAGGGCAGATAGAGCAC 59.321 60.000 0.00 0.00 35.04 4.40
891 982 0.470833 GGAGGAGGGCAGATAGAGCA 60.471 60.000 0.00 0.00 0.00 4.26
892 983 1.191489 GGGAGGAGGGCAGATAGAGC 61.191 65.000 0.00 0.00 0.00 4.09
896 2347 1.074471 GGTGGGAGGAGGGCAGATA 60.074 63.158 0.00 0.00 0.00 1.98
897 2348 2.367512 GGTGGGAGGAGGGCAGAT 60.368 66.667 0.00 0.00 0.00 2.90
902 2353 2.689034 GTCCTGGTGGGAGGAGGG 60.689 72.222 0.00 0.00 46.10 4.30
923 2374 2.529136 TGGTGGGAGGAGGGTGTG 60.529 66.667 0.00 0.00 0.00 3.82
924 2375 2.529389 GTGGTGGGAGGAGGGTGT 60.529 66.667 0.00 0.00 0.00 4.16
925 2376 3.330720 GGTGGTGGGAGGAGGGTG 61.331 72.222 0.00 0.00 0.00 4.61
926 2377 4.677151 GGGTGGTGGGAGGAGGGT 62.677 72.222 0.00 0.00 0.00 4.34
927 2378 4.675303 TGGGTGGTGGGAGGAGGG 62.675 72.222 0.00 0.00 0.00 4.30
928 2379 3.330720 GTGGGTGGTGGGAGGAGG 61.331 72.222 0.00 0.00 0.00 4.30
929 2380 3.330720 GGTGGGTGGTGGGAGGAG 61.331 72.222 0.00 0.00 0.00 3.69
930 2381 4.194497 TGGTGGGTGGTGGGAGGA 62.194 66.667 0.00 0.00 0.00 3.71
931 2382 3.650950 CTGGTGGGTGGTGGGAGG 61.651 72.222 0.00 0.00 0.00 4.30
932 2383 3.650950 CCTGGTGGGTGGTGGGAG 61.651 72.222 0.00 0.00 0.00 4.30
933 2384 4.194497 TCCTGGTGGGTGGTGGGA 62.194 66.667 0.00 0.00 36.25 4.37
934 2385 3.966543 GTCCTGGTGGGTGGTGGG 61.967 72.222 0.00 0.00 36.25 4.61
935 2386 3.966543 GGTCCTGGTGGGTGGTGG 61.967 72.222 0.00 0.00 36.25 4.61
936 2387 2.854032 AGGTCCTGGTGGGTGGTG 60.854 66.667 0.00 0.00 36.25 4.17
937 2388 2.854032 CAGGTCCTGGTGGGTGGT 60.854 66.667 11.46 0.00 36.25 4.16
938 2389 2.006805 AAACAGGTCCTGGTGGGTGG 62.007 60.000 23.06 0.00 35.51 4.61
939 2390 0.823356 CAAACAGGTCCTGGTGGGTG 60.823 60.000 23.06 8.25 35.51 4.61
940 2391 1.286305 ACAAACAGGTCCTGGTGGGT 61.286 55.000 23.06 15.29 35.51 4.51
941 2392 0.106217 AACAAACAGGTCCTGGTGGG 60.106 55.000 23.06 14.65 35.51 4.61
942 2393 1.032014 CAACAAACAGGTCCTGGTGG 58.968 55.000 23.06 17.01 35.51 4.61
943 2394 0.385390 GCAACAAACAGGTCCTGGTG 59.615 55.000 23.06 20.55 35.51 4.17
944 2395 0.258774 AGCAACAAACAGGTCCTGGT 59.741 50.000 23.06 14.54 35.51 4.00
945 2396 1.338020 GAAGCAACAAACAGGTCCTGG 59.662 52.381 23.06 7.90 35.51 4.45
946 2397 1.338020 GGAAGCAACAAACAGGTCCTG 59.662 52.381 17.88 17.88 37.52 3.86
947 2398 1.692411 GGAAGCAACAAACAGGTCCT 58.308 50.000 0.00 0.00 0.00 3.85
948 2399 0.673985 GGGAAGCAACAAACAGGTCC 59.326 55.000 0.00 0.00 0.00 4.46
949 2400 0.310854 CGGGAAGCAACAAACAGGTC 59.689 55.000 0.00 0.00 0.00 3.85
950 2401 2.414750 CGGGAAGCAACAAACAGGT 58.585 52.632 0.00 0.00 0.00 4.00
979 2430 4.724697 CGCCGTGTTTCTGCAGCG 62.725 66.667 9.47 6.25 37.39 5.18
991 2442 0.944311 GAGTGTGACATTGTCGCCGT 60.944 55.000 23.67 13.09 41.72 5.68
992 2443 0.667487 AGAGTGTGACATTGTCGCCG 60.667 55.000 23.67 0.00 41.72 6.46
994 2445 2.802816 AGAAAGAGTGTGACATTGTCGC 59.197 45.455 20.79 20.79 42.60 5.19
997 2448 4.384056 CTGGAGAAAGAGTGTGACATTGT 58.616 43.478 0.00 0.00 0.00 2.71
998 2449 3.188048 GCTGGAGAAAGAGTGTGACATTG 59.812 47.826 0.00 0.00 0.00 2.82
999 2450 3.072184 AGCTGGAGAAAGAGTGTGACATT 59.928 43.478 0.00 0.00 0.00 2.71
1000 2451 2.636893 AGCTGGAGAAAGAGTGTGACAT 59.363 45.455 0.00 0.00 0.00 3.06
1001 2452 2.036475 GAGCTGGAGAAAGAGTGTGACA 59.964 50.000 0.00 0.00 0.00 3.58
1002 2453 2.611722 GGAGCTGGAGAAAGAGTGTGAC 60.612 54.545 0.00 0.00 0.00 3.67
1004 2455 1.671261 CGGAGCTGGAGAAAGAGTGTG 60.671 57.143 0.00 0.00 0.00 3.82
1005 2456 0.605589 CGGAGCTGGAGAAAGAGTGT 59.394 55.000 0.00 0.00 0.00 3.55
1125 2590 1.198759 ATACTGGGACTGGTTGGCGT 61.199 55.000 0.00 0.00 0.00 5.68
1163 2628 1.336795 GCGCAAGGGCAACAAATAAGT 60.337 47.619 0.30 0.00 41.24 2.24
1215 2680 2.615227 GATCAATGGCGAGGGCAGGT 62.615 60.000 0.00 0.00 42.43 4.00
1288 2756 7.495934 GCAGTCAATTAGTATGTTGTAGGTGAT 59.504 37.037 0.00 0.00 0.00 3.06
1289 2757 6.816640 GCAGTCAATTAGTATGTTGTAGGTGA 59.183 38.462 0.00 0.00 0.00 4.02
1346 2814 2.125106 GGCGACCGAAGAAGGCAT 60.125 61.111 0.00 0.00 33.69 4.40
1415 2883 0.322648 CCTCATGTCACAGAGGCACA 59.677 55.000 9.54 0.00 44.37 4.57
1437 2905 3.152341 CATGTTCAGAGCCTCCTTTGTT 58.848 45.455 0.00 0.00 0.00 2.83
1483 2951 4.962362 TGAGTAGGAGATGACATTAGGCAA 59.038 41.667 0.00 0.00 0.00 4.52
1525 2993 3.386237 GCTCCTCCCACTGTCGCT 61.386 66.667 0.00 0.00 0.00 4.93
1721 3189 2.874086 CACAGCGCATTGATAATGGAGA 59.126 45.455 11.47 0.00 39.31 3.71
1766 3234 4.141937 CCATTGATCGAAGAACCACCTCTA 60.142 45.833 0.00 0.00 43.58 2.43
1812 3280 6.350864 GGATCATGCTACTATATGTCACAGCT 60.351 42.308 0.00 0.00 31.10 4.24
1831 3299 6.552350 CCCAAAGTTGAATATCCTTGGATCAT 59.448 38.462 5.30 0.00 0.00 2.45
1885 3353 6.017400 ACAACATTGGCTTCTCATTACTTG 57.983 37.500 0.00 0.00 0.00 3.16
1903 3371 6.398234 AGTAACAACATTTGGCATACAACA 57.602 33.333 0.00 0.00 39.19 3.33
1906 3374 5.221322 TGCAAGTAACAACATTTGGCATACA 60.221 36.000 0.00 0.00 34.12 2.29
1944 3412 3.495331 TCTTCCATGCTTGCAAAGGTAA 58.505 40.909 0.00 8.59 46.35 2.85
2010 3478 7.556844 AGTATGAGATGACATTAGGTTTTCGT 58.443 34.615 0.00 0.00 0.00 3.85
2068 3536 9.927081 ACAGAGATCAATCATTTTAATAAGGGT 57.073 29.630 0.00 0.00 0.00 4.34
2274 3745 0.668706 CCATCGCGTCATCCATCCTC 60.669 60.000 5.77 0.00 0.00 3.71
2286 3757 3.125146 TCTCACTGAATTTTTCCATCGCG 59.875 43.478 0.00 0.00 0.00 5.87
2411 3882 8.632906 ATGATGAATATCCCTGTTCTTCATTC 57.367 34.615 9.37 0.00 40.92 2.67
2449 3920 6.778834 AAGATGCCATGTTCATCAATTACA 57.221 33.333 20.47 0.00 41.98 2.41
2640 4112 6.399743 AGCATATCAAGACTGAGAGCATATG 58.600 40.000 0.00 0.00 34.23 1.78
2641 4113 6.438108 AGAGCATATCAAGACTGAGAGCATAT 59.562 38.462 0.00 0.00 34.23 1.78
2671 4146 5.880332 GCTGGAGTAATCAGGATAACAACAA 59.120 40.000 0.00 0.00 33.16 2.83
2725 4200 3.089284 AGCAACTAACAACCATAAGGCC 58.911 45.455 0.00 0.00 39.06 5.19
2752 4227 1.068741 GGCAATCTACCCGACTACCAG 59.931 57.143 0.00 0.00 0.00 4.00
2760 4235 3.753294 ATGAACTAGGCAATCTACCCG 57.247 47.619 0.00 0.00 0.00 5.28
2862 4340 5.663106 AGGGAGTATGAAGTATGAAGAGCAA 59.337 40.000 0.00 0.00 0.00 3.91
2881 4359 3.073274 AGAATTTTGGAACGGAGGGAG 57.927 47.619 0.00 0.00 0.00 4.30
2882 4360 3.153919 CAAGAATTTTGGAACGGAGGGA 58.846 45.455 0.00 0.00 0.00 4.20
2883 4361 2.890945 ACAAGAATTTTGGAACGGAGGG 59.109 45.455 0.00 0.00 0.00 4.30
2884 4362 5.897377 ATACAAGAATTTTGGAACGGAGG 57.103 39.130 0.00 0.00 0.00 4.30
2885 4363 8.263940 TCTAATACAAGAATTTTGGAACGGAG 57.736 34.615 0.00 0.00 0.00 4.63
2886 4364 8.801882 ATCTAATACAAGAATTTTGGAACGGA 57.198 30.769 0.00 0.00 0.00 4.69
2887 4365 9.855021 AAATCTAATACAAGAATTTTGGAACGG 57.145 29.630 0.00 0.00 0.00 4.44
2890 4368 9.651913 GGCAAATCTAATACAAGAATTTTGGAA 57.348 29.630 0.00 0.00 30.97 3.53
2891 4369 9.034800 AGGCAAATCTAATACAAGAATTTTGGA 57.965 29.630 0.00 0.00 30.97 3.53
2899 4377 9.268268 CCGTATTTAGGCAAATCTAATACAAGA 57.732 33.333 0.00 0.00 35.88 3.02
2900 4378 9.268268 TCCGTATTTAGGCAAATCTAATACAAG 57.732 33.333 0.00 0.00 35.88 3.16
2901 4379 9.787435 ATCCGTATTTAGGCAAATCTAATACAA 57.213 29.630 0.00 0.00 35.88 2.41
2902 4380 9.214957 CATCCGTATTTAGGCAAATCTAATACA 57.785 33.333 0.00 0.00 35.88 2.29
2903 4381 9.216117 ACATCCGTATTTAGGCAAATCTAATAC 57.784 33.333 0.00 0.00 35.88 1.89
2905 4383 9.959721 ATACATCCGTATTTAGGCAAATCTAAT 57.040 29.630 0.00 0.00 34.53 1.73
2906 4384 9.431887 GATACATCCGTATTTAGGCAAATCTAA 57.568 33.333 0.00 0.00 38.48 2.10
2907 4385 8.590204 TGATACATCCGTATTTAGGCAAATCTA 58.410 33.333 0.00 0.00 38.48 1.98
2908 4386 7.450074 TGATACATCCGTATTTAGGCAAATCT 58.550 34.615 0.00 0.00 38.48 2.40
2909 4387 7.667043 TGATACATCCGTATTTAGGCAAATC 57.333 36.000 0.00 0.00 38.48 2.17
2910 4388 7.719633 ACTTGATACATCCGTATTTAGGCAAAT 59.280 33.333 0.00 0.00 38.48 2.32
2911 4389 7.051623 ACTTGATACATCCGTATTTAGGCAAA 58.948 34.615 0.00 0.00 38.48 3.68
2912 4390 6.588204 ACTTGATACATCCGTATTTAGGCAA 58.412 36.000 0.00 0.00 38.48 4.52
2913 4391 6.169557 ACTTGATACATCCGTATTTAGGCA 57.830 37.500 0.00 0.00 38.48 4.75
2914 4392 6.145696 GTGACTTGATACATCCGTATTTAGGC 59.854 42.308 0.00 0.00 38.48 3.93
2915 4393 7.207383 TGTGACTTGATACATCCGTATTTAGG 58.793 38.462 0.00 0.00 38.48 2.69
2916 4394 8.818141 ATGTGACTTGATACATCCGTATTTAG 57.182 34.615 0.00 0.00 38.48 1.85
2917 4395 9.607988 AAATGTGACTTGATACATCCGTATTTA 57.392 29.630 0.00 0.00 38.48 1.40
2918 4396 8.506168 AAATGTGACTTGATACATCCGTATTT 57.494 30.769 0.00 0.00 38.48 1.40
2919 4397 8.506168 AAAATGTGACTTGATACATCCGTATT 57.494 30.769 0.00 0.00 38.48 1.89
2920 4398 9.261180 CTAAAATGTGACTTGATACATCCGTAT 57.739 33.333 0.00 0.00 41.16 3.06
2921 4399 8.255206 ACTAAAATGTGACTTGATACATCCGTA 58.745 33.333 0.00 0.00 36.56 4.02
2922 4400 7.103641 ACTAAAATGTGACTTGATACATCCGT 58.896 34.615 0.00 0.00 36.56 4.69
2923 4401 7.539712 ACTAAAATGTGACTTGATACATCCG 57.460 36.000 0.00 0.00 36.56 4.18
2967 4445 9.987272 CCCAAAATTCTTGTCTTAGATTTTTCT 57.013 29.630 0.00 0.00 36.41 2.52
2968 4446 9.981114 TCCCAAAATTCTTGTCTTAGATTTTTC 57.019 29.630 0.00 0.00 36.41 2.29
2969 4447 9.764363 GTCCCAAAATTCTTGTCTTAGATTTTT 57.236 29.630 0.00 0.00 37.82 1.94
2970 4448 8.082242 CGTCCCAAAATTCTTGTCTTAGATTTT 58.918 33.333 0.00 0.00 32.19 1.82
2971 4449 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
2972 4450 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
2973 4451 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
2974 4452 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
2975 4453 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
2976 4454 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
2977 4455 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
2978 4456 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
2979 4457 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
2980 4458 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
2981 4459 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
2982 4460 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
2983 4461 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
2984 4462 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
2985 4463 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
2986 4464 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2987 4465 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2988 4466 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
2989 4467 2.178325 TCATATACTCCCTCCGTCCCAA 59.822 50.000 0.00 0.00 0.00 4.12
2990 4468 1.784593 TCATATACTCCCTCCGTCCCA 59.215 52.381 0.00 0.00 0.00 4.37
2991 4469 2.169330 GTCATATACTCCCTCCGTCCC 58.831 57.143 0.00 0.00 0.00 4.46
2992 4470 1.811359 CGTCATATACTCCCTCCGTCC 59.189 57.143 0.00 0.00 0.00 4.79
2993 4471 1.811359 CCGTCATATACTCCCTCCGTC 59.189 57.143 0.00 0.00 0.00 4.79
2994 4472 1.422781 TCCGTCATATACTCCCTCCGT 59.577 52.381 0.00 0.00 0.00 4.69
2995 4473 1.811359 GTCCGTCATATACTCCCTCCG 59.189 57.143 0.00 0.00 0.00 4.63
2996 4474 2.872732 TGTCCGTCATATACTCCCTCC 58.127 52.381 0.00 0.00 0.00 4.30
2997 4475 4.322049 CCATTGTCCGTCATATACTCCCTC 60.322 50.000 0.00 0.00 0.00 4.30
2998 4476 3.578716 CCATTGTCCGTCATATACTCCCT 59.421 47.826 0.00 0.00 0.00 4.20
2999 4477 3.576982 TCCATTGTCCGTCATATACTCCC 59.423 47.826 0.00 0.00 0.00 4.30
3000 4478 4.866508 TCCATTGTCCGTCATATACTCC 57.133 45.455 0.00 0.00 0.00 3.85
3001 4479 6.085555 TCTTCCATTGTCCGTCATATACTC 57.914 41.667 0.00 0.00 0.00 2.59
3002 4480 5.598830 ACTCTTCCATTGTCCGTCATATACT 59.401 40.000 0.00 0.00 0.00 2.12
3003 4481 5.844004 ACTCTTCCATTGTCCGTCATATAC 58.156 41.667 0.00 0.00 0.00 1.47
3004 4482 6.479972 AACTCTTCCATTGTCCGTCATATA 57.520 37.500 0.00 0.00 0.00 0.86
3005 4483 5.359194 AACTCTTCCATTGTCCGTCATAT 57.641 39.130 0.00 0.00 0.00 1.78
3006 4484 4.819105 AACTCTTCCATTGTCCGTCATA 57.181 40.909 0.00 0.00 0.00 2.15
3007 4485 3.703001 AACTCTTCCATTGTCCGTCAT 57.297 42.857 0.00 0.00 0.00 3.06
3008 4486 4.466370 AGATAACTCTTCCATTGTCCGTCA 59.534 41.667 0.00 0.00 0.00 4.35
3009 4487 5.012328 AGATAACTCTTCCATTGTCCGTC 57.988 43.478 0.00 0.00 0.00 4.79
3010 4488 6.732896 ATAGATAACTCTTCCATTGTCCGT 57.267 37.500 0.00 0.00 32.66 4.69
3011 4489 7.210174 TCAATAGATAACTCTTCCATTGTCCG 58.790 38.462 0.00 0.00 31.33 4.79
3045 4523 3.550437 AGACAGCAACAACTCTCAGTT 57.450 42.857 0.00 0.00 39.39 3.16
3046 4524 3.550437 AAGACAGCAACAACTCTCAGT 57.450 42.857 0.00 0.00 0.00 3.41
3047 4525 3.873361 TCAAAGACAGCAACAACTCTCAG 59.127 43.478 0.00 0.00 0.00 3.35
3048 4526 3.872696 TCAAAGACAGCAACAACTCTCA 58.127 40.909 0.00 0.00 0.00 3.27
3049 4527 4.260948 CCTTCAAAGACAGCAACAACTCTC 60.261 45.833 0.00 0.00 0.00 3.20
3050 4528 3.629398 CCTTCAAAGACAGCAACAACTCT 59.371 43.478 0.00 0.00 0.00 3.24
3051 4529 3.627577 TCCTTCAAAGACAGCAACAACTC 59.372 43.478 0.00 0.00 0.00 3.01
3052 4530 3.620488 TCCTTCAAAGACAGCAACAACT 58.380 40.909 0.00 0.00 0.00 3.16
3053 4531 3.627577 TCTCCTTCAAAGACAGCAACAAC 59.372 43.478 0.00 0.00 0.00 3.32
3054 4532 3.884895 TCTCCTTCAAAGACAGCAACAA 58.115 40.909 0.00 0.00 0.00 2.83
3055 4533 3.558931 TCTCCTTCAAAGACAGCAACA 57.441 42.857 0.00 0.00 0.00 3.33
3056 4534 4.576463 TCTTTCTCCTTCAAAGACAGCAAC 59.424 41.667 0.00 0.00 35.40 4.17
3057 4535 4.780815 TCTTTCTCCTTCAAAGACAGCAA 58.219 39.130 0.00 0.00 35.40 3.91
3058 4536 4.101585 TCTCTTTCTCCTTCAAAGACAGCA 59.898 41.667 0.00 0.00 35.40 4.41
3059 4537 4.636249 TCTCTTTCTCCTTCAAAGACAGC 58.364 43.478 0.00 0.00 35.40 4.40
3060 4538 6.051717 TGTTCTCTTTCTCCTTCAAAGACAG 58.948 40.000 0.00 0.00 35.40 3.51
3061 4539 5.989477 TGTTCTCTTTCTCCTTCAAAGACA 58.011 37.500 0.00 0.00 35.40 3.41
3062 4540 6.927294 TTGTTCTCTTTCTCCTTCAAAGAC 57.073 37.500 0.00 0.00 35.40 3.01
3063 4541 8.525290 AAATTGTTCTCTTTCTCCTTCAAAGA 57.475 30.769 0.00 0.00 37.50 2.52
3064 4542 8.408601 TGAAATTGTTCTCTTTCTCCTTCAAAG 58.591 33.333 0.00 0.00 34.60 2.77
3065 4543 8.190784 GTGAAATTGTTCTCTTTCTCCTTCAAA 58.809 33.333 0.00 0.00 34.60 2.69
3066 4544 7.557719 AGTGAAATTGTTCTCTTTCTCCTTCAA 59.442 33.333 0.00 0.00 34.65 2.69
3067 4545 7.056635 AGTGAAATTGTTCTCTTTCTCCTTCA 58.943 34.615 0.00 0.00 34.65 3.02
3068 4546 7.503521 AGTGAAATTGTTCTCTTTCTCCTTC 57.496 36.000 0.00 0.00 34.65 3.46
3069 4547 7.888250 AAGTGAAATTGTTCTCTTTCTCCTT 57.112 32.000 0.00 0.00 42.25 3.36
3070 4548 7.888250 AAAGTGAAATTGTTCTCTTTCTCCT 57.112 32.000 9.54 0.00 46.85 3.69
3076 4554 6.758416 GGCAAAGAAAGTGAAATTGTTCTCTT 59.242 34.615 0.00 0.00 45.18 2.85
3077 4555 6.127366 TGGCAAAGAAAGTGAAATTGTTCTCT 60.127 34.615 0.00 0.00 38.85 3.10
3078 4556 6.042143 TGGCAAAGAAAGTGAAATTGTTCTC 58.958 36.000 0.00 0.00 34.60 2.87
3079 4557 5.976458 TGGCAAAGAAAGTGAAATTGTTCT 58.024 33.333 0.00 0.00 34.60 3.01
3080 4558 6.849588 ATGGCAAAGAAAGTGAAATTGTTC 57.150 33.333 0.00 0.00 0.00 3.18
3081 4559 8.729805 TTTATGGCAAAGAAAGTGAAATTGTT 57.270 26.923 0.00 0.00 0.00 2.83
3082 4560 8.907222 ATTTATGGCAAAGAAAGTGAAATTGT 57.093 26.923 0.00 0.00 0.00 2.71
3085 4563 9.139174 CGTTATTTATGGCAAAGAAAGTGAAAT 57.861 29.630 0.00 0.00 0.00 2.17
3086 4564 7.596995 CCGTTATTTATGGCAAAGAAAGTGAAA 59.403 33.333 0.00 0.00 0.00 2.69
3087 4565 7.087639 CCGTTATTTATGGCAAAGAAAGTGAA 58.912 34.615 0.00 0.00 0.00 3.18
3088 4566 6.616947 CCGTTATTTATGGCAAAGAAAGTGA 58.383 36.000 0.00 0.00 0.00 3.41
3089 4567 6.869421 CCGTTATTTATGGCAAAGAAAGTG 57.131 37.500 0.00 0.00 0.00 3.16
3100 4578 1.937223 TCAGCACGCCGTTATTTATGG 59.063 47.619 0.00 0.00 35.87 2.74
3101 4579 3.063452 ACTTCAGCACGCCGTTATTTATG 59.937 43.478 0.00 0.00 0.00 1.90
3102 4580 3.267483 ACTTCAGCACGCCGTTATTTAT 58.733 40.909 0.00 0.00 0.00 1.40
3103 4581 2.669434 GACTTCAGCACGCCGTTATTTA 59.331 45.455 0.00 0.00 0.00 1.40
3104 4582 1.463444 GACTTCAGCACGCCGTTATTT 59.537 47.619 0.00 0.00 0.00 1.40
3105 4583 1.076332 GACTTCAGCACGCCGTTATT 58.924 50.000 0.00 0.00 0.00 1.40
3106 4584 0.739813 GGACTTCAGCACGCCGTTAT 60.740 55.000 0.00 0.00 0.00 1.89
3107 4585 1.373748 GGACTTCAGCACGCCGTTA 60.374 57.895 0.00 0.00 0.00 3.18
3108 4586 2.665185 GGACTTCAGCACGCCGTT 60.665 61.111 0.00 0.00 0.00 4.44
3109 4587 2.933878 TTTGGACTTCAGCACGCCGT 62.934 55.000 0.00 0.00 0.00 5.68
3110 4588 2.250939 TTTGGACTTCAGCACGCCG 61.251 57.895 0.00 0.00 0.00 6.46
3111 4589 1.282875 GTTTGGACTTCAGCACGCC 59.717 57.895 0.00 0.00 0.00 5.68
3112 4590 0.040958 CTGTTTGGACTTCAGCACGC 60.041 55.000 0.00 0.00 0.00 5.34
3113 4591 1.299541 ACTGTTTGGACTTCAGCACG 58.700 50.000 0.00 0.00 33.12 5.34
3114 4592 3.202906 TGTACTGTTTGGACTTCAGCAC 58.797 45.455 0.00 0.00 33.12 4.40
3115 4593 3.552132 TGTACTGTTTGGACTTCAGCA 57.448 42.857 0.00 0.00 33.12 4.41
3116 4594 5.215160 CAATTGTACTGTTTGGACTTCAGC 58.785 41.667 0.00 0.00 33.12 4.26
3117 4595 5.299279 ACCAATTGTACTGTTTGGACTTCAG 59.701 40.000 21.26 0.00 42.02 3.02
3118 4596 5.197451 ACCAATTGTACTGTTTGGACTTCA 58.803 37.500 21.26 0.00 42.02 3.02
3119 4597 5.298276 TGACCAATTGTACTGTTTGGACTTC 59.702 40.000 21.26 12.81 42.02 3.01
3120 4598 5.197451 TGACCAATTGTACTGTTTGGACTT 58.803 37.500 21.26 6.32 42.02 3.01
3121 4599 4.787551 TGACCAATTGTACTGTTTGGACT 58.212 39.130 21.26 6.85 42.02 3.85
3122 4600 4.578928 ACTGACCAATTGTACTGTTTGGAC 59.421 41.667 21.26 17.13 42.02 4.02
3123 4601 4.578516 CACTGACCAATTGTACTGTTTGGA 59.421 41.667 21.26 6.30 42.02 3.53
3124 4602 4.578516 TCACTGACCAATTGTACTGTTTGG 59.421 41.667 15.88 15.88 44.41 3.28
3125 4603 5.749596 TCACTGACCAATTGTACTGTTTG 57.250 39.130 4.43 0.00 0.00 2.93
3126 4604 5.179368 CGATCACTGACCAATTGTACTGTTT 59.821 40.000 4.43 0.00 0.00 2.83
3127 4605 4.690748 CGATCACTGACCAATTGTACTGTT 59.309 41.667 4.43 0.00 0.00 3.16
3128 4606 4.245660 CGATCACTGACCAATTGTACTGT 58.754 43.478 4.43 5.44 0.00 3.55
3129 4607 4.091945 CACGATCACTGACCAATTGTACTG 59.908 45.833 4.43 4.85 0.00 2.74
3130 4608 4.021456 TCACGATCACTGACCAATTGTACT 60.021 41.667 4.43 0.00 0.00 2.73
3131 4609 4.242475 TCACGATCACTGACCAATTGTAC 58.758 43.478 4.43 0.00 0.00 2.90
3132 4610 4.529109 TCACGATCACTGACCAATTGTA 57.471 40.909 4.43 0.00 0.00 2.41
3133 4611 3.401033 TCACGATCACTGACCAATTGT 57.599 42.857 4.43 0.00 0.00 2.71
3134 4612 3.425359 GCTTCACGATCACTGACCAATTG 60.425 47.826 0.00 0.00 0.00 2.32
3135 4613 2.744202 GCTTCACGATCACTGACCAATT 59.256 45.455 0.00 0.00 0.00 2.32
3136 4614 2.027745 AGCTTCACGATCACTGACCAAT 60.028 45.455 0.00 0.00 0.00 3.16
3137 4615 1.344438 AGCTTCACGATCACTGACCAA 59.656 47.619 0.00 0.00 0.00 3.67
3138 4616 0.969149 AGCTTCACGATCACTGACCA 59.031 50.000 0.00 0.00 0.00 4.02
3139 4617 2.086054 AAGCTTCACGATCACTGACC 57.914 50.000 0.00 0.00 0.00 4.02
3140 4618 4.238514 ACTAAAGCTTCACGATCACTGAC 58.761 43.478 0.00 0.00 0.00 3.51
3141 4619 4.521130 ACTAAAGCTTCACGATCACTGA 57.479 40.909 0.00 0.00 0.00 3.41
3142 4620 6.531594 TCAATACTAAAGCTTCACGATCACTG 59.468 38.462 0.00 0.00 0.00 3.66
3143 4621 6.631016 TCAATACTAAAGCTTCACGATCACT 58.369 36.000 0.00 0.00 0.00 3.41
3144 4622 6.752351 TCTCAATACTAAAGCTTCACGATCAC 59.248 38.462 0.00 0.00 0.00 3.06
3145 4623 6.752351 GTCTCAATACTAAAGCTTCACGATCA 59.248 38.462 0.00 0.00 0.00 2.92
3146 4624 6.752351 TGTCTCAATACTAAAGCTTCACGATC 59.248 38.462 0.00 0.00 0.00 3.69
3147 4625 6.631016 TGTCTCAATACTAAAGCTTCACGAT 58.369 36.000 0.00 0.00 0.00 3.73
3148 4626 6.020971 TGTCTCAATACTAAAGCTTCACGA 57.979 37.500 0.00 0.00 0.00 4.35
3149 4627 6.706055 TTGTCTCAATACTAAAGCTTCACG 57.294 37.500 0.00 0.00 0.00 4.35
3150 4628 8.507249 ACATTTGTCTCAATACTAAAGCTTCAC 58.493 33.333 0.00 0.00 0.00 3.18
3151 4629 8.621532 ACATTTGTCTCAATACTAAAGCTTCA 57.378 30.769 0.00 0.00 0.00 3.02
3152 4630 9.899226 AAACATTTGTCTCAATACTAAAGCTTC 57.101 29.630 0.00 0.00 0.00 3.86
3154 4632 9.683069 CAAAACATTTGTCTCAATACTAAAGCT 57.317 29.630 0.00 0.00 0.00 3.74
3155 4633 9.463443 ACAAAACATTTGTCTCAATACTAAAGC 57.537 29.630 2.76 0.00 0.00 3.51
3175 4653 9.722056 CCAGCTAACAATATCTTCATACAAAAC 57.278 33.333 0.00 0.00 0.00 2.43
3176 4654 8.902806 CCCAGCTAACAATATCTTCATACAAAA 58.097 33.333 0.00 0.00 0.00 2.44
3177 4655 8.052748 ACCCAGCTAACAATATCTTCATACAAA 58.947 33.333 0.00 0.00 0.00 2.83
3178 4656 7.573710 ACCCAGCTAACAATATCTTCATACAA 58.426 34.615 0.00 0.00 0.00 2.41
3179 4657 7.136822 ACCCAGCTAACAATATCTTCATACA 57.863 36.000 0.00 0.00 0.00 2.29
3180 4658 7.934120 AGAACCCAGCTAACAATATCTTCATAC 59.066 37.037 0.00 0.00 0.00 2.39
3181 4659 8.034313 AGAACCCAGCTAACAATATCTTCATA 57.966 34.615 0.00 0.00 0.00 2.15
3182 4660 6.904626 AGAACCCAGCTAACAATATCTTCAT 58.095 36.000 0.00 0.00 0.00 2.57
3183 4661 6.313519 AGAACCCAGCTAACAATATCTTCA 57.686 37.500 0.00 0.00 0.00 3.02
3184 4662 6.261158 GGAAGAACCCAGCTAACAATATCTTC 59.739 42.308 11.33 11.33 39.48 2.87
3185 4663 6.069381 AGGAAGAACCCAGCTAACAATATCTT 60.069 38.462 0.00 0.00 40.05 2.40
3186 4664 5.430089 AGGAAGAACCCAGCTAACAATATCT 59.570 40.000 0.00 0.00 40.05 1.98
3187 4665 5.685728 AGGAAGAACCCAGCTAACAATATC 58.314 41.667 0.00 0.00 40.05 1.63
3188 4666 5.717119 AGGAAGAACCCAGCTAACAATAT 57.283 39.130 0.00 0.00 40.05 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.