Multiple sequence alignment - TraesCS7D01G231300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G231300 | chr7D | 100.000 | 6442 | 0 | 0 | 1 | 6442 | 192375877 | 192369436 | 0.000000e+00 | 11897.0 |
1 | TraesCS7D01G231300 | chr7D | 90.964 | 166 | 13 | 1 | 4259 | 4422 | 197927008 | 197927173 | 8.410000e-54 | 222.0 |
2 | TraesCS7D01G231300 | chr7A | 95.583 | 5932 | 204 | 19 | 563 | 6442 | 201990889 | 201984964 | 0.000000e+00 | 9450.0 |
3 | TraesCS7D01G231300 | chr7A | 93.939 | 264 | 12 | 3 | 263 | 524 | 201991148 | 201990887 | 4.680000e-106 | 396.0 |
4 | TraesCS7D01G231300 | chr7A | 90.964 | 166 | 12 | 2 | 4247 | 4409 | 462978574 | 462978739 | 3.020000e-53 | 220.0 |
5 | TraesCS7D01G231300 | chr7A | 82.677 | 127 | 21 | 1 | 276 | 401 | 610151572 | 610151698 | 1.900000e-20 | 111.0 |
6 | TraesCS7D01G231300 | chr7A | 81.395 | 129 | 19 | 5 | 276 | 400 | 573837110 | 573837237 | 4.110000e-17 | 100.0 |
7 | TraesCS7D01G231300 | chr7B | 96.661 | 4403 | 124 | 9 | 2059 | 6442 | 155473525 | 155469127 | 0.000000e+00 | 7295.0 |
8 | TraesCS7D01G231300 | chr7B | 94.095 | 1829 | 73 | 16 | 245 | 2062 | 155475365 | 155473561 | 0.000000e+00 | 2747.0 |
9 | TraesCS7D01G231300 | chr7B | 96.552 | 58 | 2 | 0 | 2 | 59 | 155475459 | 155475402 | 5.320000e-16 | 97.1 |
10 | TraesCS7D01G231300 | chr7B | 100.000 | 31 | 0 | 0 | 193 | 223 | 155475393 | 155475363 | 2.510000e-04 | 58.4 |
11 | TraesCS7D01G231300 | chr4D | 94.409 | 626 | 23 | 2 | 5818 | 6442 | 167197249 | 167197863 | 0.000000e+00 | 952.0 |
12 | TraesCS7D01G231300 | chr5A | 91.071 | 168 | 12 | 2 | 4252 | 4417 | 86662177 | 86662011 | 2.340000e-54 | 224.0 |
13 | TraesCS7D01G231300 | chr5B | 92.810 | 153 | 9 | 1 | 4259 | 4409 | 98663330 | 98663178 | 3.020000e-53 | 220.0 |
14 | TraesCS7D01G231300 | chr5B | 87.368 | 95 | 12 | 0 | 280 | 374 | 489306560 | 489306466 | 6.830000e-20 | 110.0 |
15 | TraesCS7D01G231300 | chr1D | 91.250 | 160 | 11 | 2 | 4259 | 4416 | 7349704 | 7349862 | 1.410000e-51 | 215.0 |
16 | TraesCS7D01G231300 | chr4B | 90.244 | 164 | 14 | 2 | 4252 | 4413 | 658773057 | 658773220 | 5.060000e-51 | 213.0 |
17 | TraesCS7D01G231300 | chr2D | 89.349 | 169 | 14 | 3 | 4250 | 4414 | 88290046 | 88290214 | 6.540000e-50 | 209.0 |
18 | TraesCS7D01G231300 | chr2B | 90.909 | 99 | 9 | 0 | 277 | 375 | 66962287 | 66962385 | 4.050000e-27 | 134.0 |
19 | TraesCS7D01G231300 | chr1A | 89.899 | 99 | 10 | 0 | 276 | 374 | 27264132 | 27264034 | 1.890000e-25 | 128.0 |
20 | TraesCS7D01G231300 | chr4A | 81.890 | 127 | 21 | 1 | 276 | 400 | 210621496 | 210621622 | 8.830000e-19 | 106.0 |
21 | TraesCS7D01G231300 | chr3A | 80.315 | 127 | 22 | 3 | 276 | 400 | 151650088 | 151649963 | 6.880000e-15 | 93.5 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G231300 | chr7D | 192369436 | 192375877 | 6441 | True | 11897.000 | 11897 | 100.000 | 1 | 6442 | 1 | chr7D.!!$R1 | 6441 |
1 | TraesCS7D01G231300 | chr7A | 201984964 | 201991148 | 6184 | True | 4923.000 | 9450 | 94.761 | 263 | 6442 | 2 | chr7A.!!$R1 | 6179 |
2 | TraesCS7D01G231300 | chr7B | 155469127 | 155475459 | 6332 | True | 2549.375 | 7295 | 96.827 | 2 | 6442 | 4 | chr7B.!!$R1 | 6440 |
3 | TraesCS7D01G231300 | chr4D | 167197249 | 167197863 | 614 | False | 952.000 | 952 | 94.409 | 5818 | 6442 | 1 | chr4D.!!$F1 | 624 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
157 | 158 | 0.314935 | AACTGAGGTTGCATTTGCCG | 59.685 | 50.000 | 0.00 | 0.0 | 41.18 | 5.69 | F |
161 | 162 | 0.316841 | GAGGTTGCATTTGCCGGAAA | 59.683 | 50.000 | 5.05 | 0.0 | 41.18 | 3.13 | F |
639 | 644 | 0.538977 | AGTGGCATGTGCAAGCTCTT | 60.539 | 50.000 | 7.36 | 0.0 | 44.36 | 2.85 | F |
2402 | 2474 | 0.179070 | GGGAGGATTGAGAAGCCGAC | 60.179 | 60.000 | 0.00 | 0.0 | 43.19 | 4.79 | F |
2496 | 2568 | 0.250295 | ACATTCCAGTCACCACACCG | 60.250 | 55.000 | 0.00 | 0.0 | 0.00 | 4.94 | F |
3846 | 3921 | 2.094649 | GCTATACCCGTATGAGGCTGAC | 60.095 | 54.545 | 0.00 | 0.0 | 0.00 | 3.51 | F |
4513 | 4594 | 1.328430 | GGTACCGCTGCTTAGGACCT | 61.328 | 60.000 | 0.00 | 0.0 | 0.00 | 3.85 | F |
4653 | 4734 | 2.570752 | CTGGAGAGCCATGCAGGTATAT | 59.429 | 50.000 | 0.00 | 0.0 | 44.91 | 0.86 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1354 | 1367 | 0.250038 | CTGCATACCTGTATGGCGCT | 60.250 | 55.000 | 16.71 | 0.00 | 42.32 | 5.92 | R |
1428 | 1441 | 1.652124 | CAACGGAACATACGAACCTCG | 59.348 | 52.381 | 0.00 | 0.00 | 46.93 | 4.63 | R |
2445 | 2517 | 0.178903 | TCCTACCCTGGCAAGTGACT | 60.179 | 55.000 | 0.31 | 0.00 | 0.00 | 3.41 | R |
3834 | 3909 | 1.134965 | ACAGAAGCGTCAGCCTCATAC | 60.135 | 52.381 | 1.61 | 0.00 | 46.67 | 2.39 | R |
3955 | 4030 | 3.325716 | AGCGAAGTACCTTGTAAAAGGGA | 59.674 | 43.478 | 16.40 | 4.25 | 44.27 | 4.20 | R |
4798 | 4879 | 0.319211 | TTGCTGACACGTACTTCCCG | 60.319 | 55.000 | 0.00 | 0.00 | 0.00 | 5.14 | R |
5436 | 5521 | 0.676782 | GACGCCCCATGCTGTTAGTT | 60.677 | 55.000 | 0.00 | 0.00 | 38.05 | 2.24 | R |
6174 | 6269 | 6.105657 | TGCAACATCAACAATCTGTATACG | 57.894 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
30 | 31 | 4.833390 | ACAGTCCTAATCACCACTAAAGC | 58.167 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
59 | 60 | 4.736126 | TGAATCACATGAGACGGTACAT | 57.264 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
60 | 61 | 4.682787 | TGAATCACATGAGACGGTACATC | 58.317 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
62 | 63 | 5.592688 | TGAATCACATGAGACGGTACATCTA | 59.407 | 40.000 | 0.00 | 0.00 | 21.89 | 1.98 |
63 | 64 | 4.895224 | TCACATGAGACGGTACATCTAC | 57.105 | 45.455 | 0.00 | 0.00 | 21.89 | 2.59 |
64 | 65 | 4.266714 | TCACATGAGACGGTACATCTACA | 58.733 | 43.478 | 0.00 | 0.00 | 21.89 | 2.74 |
65 | 66 | 4.887655 | TCACATGAGACGGTACATCTACAT | 59.112 | 41.667 | 0.00 | 1.34 | 21.89 | 2.29 |
66 | 67 | 5.008712 | TCACATGAGACGGTACATCTACATC | 59.991 | 44.000 | 0.00 | 0.00 | 21.89 | 3.06 |
67 | 68 | 5.009110 | CACATGAGACGGTACATCTACATCT | 59.991 | 44.000 | 0.00 | 0.00 | 21.89 | 2.90 |
68 | 69 | 6.204882 | CACATGAGACGGTACATCTACATCTA | 59.795 | 42.308 | 0.00 | 0.00 | 21.89 | 1.98 |
69 | 70 | 6.771267 | ACATGAGACGGTACATCTACATCTAA | 59.229 | 38.462 | 0.00 | 0.00 | 21.89 | 2.10 |
70 | 71 | 6.862711 | TGAGACGGTACATCTACATCTAAG | 57.137 | 41.667 | 0.00 | 0.00 | 21.89 | 2.18 |
71 | 72 | 6.354938 | TGAGACGGTACATCTACATCTAAGT | 58.645 | 40.000 | 0.00 | 0.00 | 21.89 | 2.24 |
72 | 73 | 6.482641 | TGAGACGGTACATCTACATCTAAGTC | 59.517 | 42.308 | 0.00 | 0.00 | 21.89 | 3.01 |
73 | 74 | 5.466058 | AGACGGTACATCTACATCTAAGTCG | 59.534 | 44.000 | 0.00 | 0.00 | 0.00 | 4.18 |
74 | 75 | 4.514441 | ACGGTACATCTACATCTAAGTCGG | 59.486 | 45.833 | 0.00 | 0.00 | 0.00 | 4.79 |
75 | 76 | 4.514441 | CGGTACATCTACATCTAAGTCGGT | 59.486 | 45.833 | 0.00 | 0.00 | 0.00 | 4.69 |
76 | 77 | 5.333952 | CGGTACATCTACATCTAAGTCGGTC | 60.334 | 48.000 | 0.00 | 0.00 | 0.00 | 4.79 |
77 | 78 | 5.530171 | GGTACATCTACATCTAAGTCGGTCA | 59.470 | 44.000 | 0.00 | 0.00 | 0.00 | 4.02 |
78 | 79 | 6.039047 | GGTACATCTACATCTAAGTCGGTCAA | 59.961 | 42.308 | 0.00 | 0.00 | 0.00 | 3.18 |
79 | 80 | 6.137794 | ACATCTACATCTAAGTCGGTCAAG | 57.862 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
80 | 81 | 5.067936 | ACATCTACATCTAAGTCGGTCAAGG | 59.932 | 44.000 | 0.00 | 0.00 | 0.00 | 3.61 |
81 | 82 | 4.597004 | TCTACATCTAAGTCGGTCAAGGT | 58.403 | 43.478 | 0.00 | 0.00 | 0.00 | 3.50 |
82 | 83 | 5.014858 | TCTACATCTAAGTCGGTCAAGGTT | 58.985 | 41.667 | 0.00 | 0.00 | 0.00 | 3.50 |
83 | 84 | 4.189639 | ACATCTAAGTCGGTCAAGGTTC | 57.810 | 45.455 | 0.00 | 0.00 | 0.00 | 3.62 |
84 | 85 | 3.833070 | ACATCTAAGTCGGTCAAGGTTCT | 59.167 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
85 | 86 | 4.283722 | ACATCTAAGTCGGTCAAGGTTCTT | 59.716 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
86 | 87 | 4.950205 | TCTAAGTCGGTCAAGGTTCTTT | 57.050 | 40.909 | 0.00 | 0.00 | 0.00 | 2.52 |
87 | 88 | 4.879598 | TCTAAGTCGGTCAAGGTTCTTTC | 58.120 | 43.478 | 0.00 | 0.00 | 0.00 | 2.62 |
88 | 89 | 3.840124 | AAGTCGGTCAAGGTTCTTTCT | 57.160 | 42.857 | 0.00 | 0.00 | 0.00 | 2.52 |
89 | 90 | 3.840124 | AGTCGGTCAAGGTTCTTTCTT | 57.160 | 42.857 | 0.00 | 0.00 | 0.00 | 2.52 |
90 | 91 | 4.152284 | AGTCGGTCAAGGTTCTTTCTTT | 57.848 | 40.909 | 0.00 | 0.00 | 0.00 | 2.52 |
91 | 92 | 4.524053 | AGTCGGTCAAGGTTCTTTCTTTT | 58.476 | 39.130 | 0.00 | 0.00 | 0.00 | 2.27 |
92 | 93 | 4.948004 | AGTCGGTCAAGGTTCTTTCTTTTT | 59.052 | 37.500 | 0.00 | 0.00 | 0.00 | 1.94 |
93 | 94 | 5.066117 | AGTCGGTCAAGGTTCTTTCTTTTTC | 59.934 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
94 | 95 | 4.034742 | TCGGTCAAGGTTCTTTCTTTTTCG | 59.965 | 41.667 | 0.00 | 0.00 | 0.00 | 3.46 |
95 | 96 | 4.034742 | CGGTCAAGGTTCTTTCTTTTTCGA | 59.965 | 41.667 | 0.00 | 0.00 | 0.00 | 3.71 |
96 | 97 | 5.448089 | CGGTCAAGGTTCTTTCTTTTTCGAA | 60.448 | 40.000 | 0.00 | 0.00 | 0.00 | 3.71 |
97 | 98 | 5.971792 | GGTCAAGGTTCTTTCTTTTTCGAAG | 59.028 | 40.000 | 0.00 | 0.00 | 0.00 | 3.79 |
98 | 99 | 5.455849 | GTCAAGGTTCTTTCTTTTTCGAAGC | 59.544 | 40.000 | 0.00 | 0.00 | 34.94 | 3.86 |
99 | 100 | 4.569761 | AGGTTCTTTCTTTTTCGAAGCC | 57.430 | 40.909 | 0.00 | 0.00 | 35.21 | 4.35 |
100 | 101 | 3.951680 | AGGTTCTTTCTTTTTCGAAGCCA | 59.048 | 39.130 | 0.00 | 0.00 | 35.21 | 4.75 |
101 | 102 | 4.036852 | AGGTTCTTTCTTTTTCGAAGCCAG | 59.963 | 41.667 | 0.00 | 0.00 | 35.21 | 4.85 |
102 | 103 | 4.202020 | GGTTCTTTCTTTTTCGAAGCCAGT | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 4.00 |
103 | 104 | 5.340803 | GTTCTTTCTTTTTCGAAGCCAGTT | 58.659 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
104 | 105 | 5.576447 | TCTTTCTTTTTCGAAGCCAGTTT | 57.424 | 34.783 | 0.00 | 0.00 | 0.00 | 2.66 |
105 | 106 | 5.961272 | TCTTTCTTTTTCGAAGCCAGTTTT | 58.039 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
106 | 107 | 5.804979 | TCTTTCTTTTTCGAAGCCAGTTTTG | 59.195 | 36.000 | 0.00 | 0.00 | 0.00 | 2.44 |
107 | 108 | 4.974368 | TCTTTTTCGAAGCCAGTTTTGA | 57.026 | 36.364 | 0.00 | 0.00 | 0.00 | 2.69 |
108 | 109 | 5.317733 | TCTTTTTCGAAGCCAGTTTTGAA | 57.682 | 34.783 | 0.00 | 0.00 | 0.00 | 2.69 |
109 | 110 | 5.715070 | TCTTTTTCGAAGCCAGTTTTGAAA | 58.285 | 33.333 | 0.00 | 5.76 | 38.21 | 2.69 |
110 | 111 | 6.159988 | TCTTTTTCGAAGCCAGTTTTGAAAA | 58.840 | 32.000 | 14.71 | 14.71 | 43.53 | 2.29 |
112 | 113 | 6.976636 | TTTTCGAAGCCAGTTTTGAAAAAT | 57.023 | 29.167 | 15.78 | 0.00 | 42.85 | 1.82 |
113 | 114 | 5.964887 | TTCGAAGCCAGTTTTGAAAAATG | 57.035 | 34.783 | 10.79 | 10.79 | 29.63 | 2.32 |
114 | 115 | 3.801594 | TCGAAGCCAGTTTTGAAAAATGC | 59.198 | 39.130 | 12.13 | 8.15 | 0.00 | 3.56 |
115 | 116 | 3.555139 | CGAAGCCAGTTTTGAAAAATGCA | 59.445 | 39.130 | 12.13 | 0.00 | 0.00 | 3.96 |
116 | 117 | 4.033817 | CGAAGCCAGTTTTGAAAAATGCAA | 59.966 | 37.500 | 12.13 | 0.00 | 0.00 | 4.08 |
117 | 118 | 5.277442 | CGAAGCCAGTTTTGAAAAATGCAAT | 60.277 | 36.000 | 12.13 | 0.86 | 0.00 | 3.56 |
118 | 119 | 6.453926 | AAGCCAGTTTTGAAAAATGCAATT | 57.546 | 29.167 | 12.13 | 4.25 | 38.98 | 2.32 |
132 | 133 | 6.930667 | AAATGCAATTTCAGCTTCACTTTT | 57.069 | 29.167 | 0.00 | 0.00 | 44.81 | 2.27 |
133 | 134 | 6.535274 | AATGCAATTTCAGCTTCACTTTTC | 57.465 | 33.333 | 0.00 | 0.00 | 26.74 | 2.29 |
134 | 135 | 5.008619 | TGCAATTTCAGCTTCACTTTTCA | 57.991 | 34.783 | 0.00 | 0.00 | 0.00 | 2.69 |
135 | 136 | 4.805192 | TGCAATTTCAGCTTCACTTTTCAC | 59.195 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
136 | 137 | 4.805192 | GCAATTTCAGCTTCACTTTTCACA | 59.195 | 37.500 | 0.00 | 0.00 | 0.00 | 3.58 |
137 | 138 | 5.291614 | GCAATTTCAGCTTCACTTTTCACAA | 59.708 | 36.000 | 0.00 | 0.00 | 0.00 | 3.33 |
138 | 139 | 6.183360 | GCAATTTCAGCTTCACTTTTCACAAA | 60.183 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
139 | 140 | 7.623925 | GCAATTTCAGCTTCACTTTTCACAAAA | 60.624 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
140 | 141 | 6.704512 | TTTCAGCTTCACTTTTCACAAAAC | 57.295 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
141 | 142 | 5.643379 | TCAGCTTCACTTTTCACAAAACT | 57.357 | 34.783 | 0.00 | 0.00 | 0.00 | 2.66 |
142 | 143 | 5.401550 | TCAGCTTCACTTTTCACAAAACTG | 58.598 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
143 | 144 | 5.182950 | TCAGCTTCACTTTTCACAAAACTGA | 59.817 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
144 | 145 | 5.514204 | CAGCTTCACTTTTCACAAAACTGAG | 59.486 | 40.000 | 0.00 | 0.00 | 29.28 | 3.35 |
145 | 146 | 4.800471 | GCTTCACTTTTCACAAAACTGAGG | 59.200 | 41.667 | 0.00 | 0.00 | 29.28 | 3.86 |
146 | 147 | 5.622233 | GCTTCACTTTTCACAAAACTGAGGT | 60.622 | 40.000 | 0.00 | 0.00 | 29.46 | 3.85 |
147 | 148 | 5.975693 | TCACTTTTCACAAAACTGAGGTT | 57.024 | 34.783 | 0.00 | 0.00 | 37.24 | 3.50 |
148 | 149 | 5.708948 | TCACTTTTCACAAAACTGAGGTTG | 58.291 | 37.500 | 0.00 | 0.00 | 35.63 | 3.77 |
149 | 150 | 4.327087 | CACTTTTCACAAAACTGAGGTTGC | 59.673 | 41.667 | 0.00 | 0.00 | 35.63 | 4.17 |
150 | 151 | 4.021544 | ACTTTTCACAAAACTGAGGTTGCA | 60.022 | 37.500 | 0.00 | 0.00 | 35.63 | 4.08 |
151 | 152 | 4.734398 | TTTCACAAAACTGAGGTTGCAT | 57.266 | 36.364 | 0.00 | 0.00 | 35.63 | 3.96 |
152 | 153 | 4.734398 | TTCACAAAACTGAGGTTGCATT | 57.266 | 36.364 | 0.00 | 0.00 | 35.63 | 3.56 |
153 | 154 | 4.734398 | TCACAAAACTGAGGTTGCATTT | 57.266 | 36.364 | 0.00 | 0.00 | 35.63 | 2.32 |
154 | 155 | 4.431809 | TCACAAAACTGAGGTTGCATTTG | 58.568 | 39.130 | 4.12 | 4.12 | 35.63 | 2.32 |
155 | 156 | 3.001533 | CACAAAACTGAGGTTGCATTTGC | 59.998 | 43.478 | 5.32 | 0.00 | 42.50 | 3.68 |
156 | 157 | 2.531522 | AAACTGAGGTTGCATTTGCC | 57.468 | 45.000 | 0.00 | 0.00 | 41.18 | 4.52 |
157 | 158 | 0.314935 | AACTGAGGTTGCATTTGCCG | 59.685 | 50.000 | 0.00 | 0.00 | 41.18 | 5.69 |
158 | 159 | 1.213537 | CTGAGGTTGCATTTGCCGG | 59.786 | 57.895 | 0.00 | 0.00 | 41.18 | 6.13 |
159 | 160 | 1.228398 | TGAGGTTGCATTTGCCGGA | 60.228 | 52.632 | 5.05 | 0.00 | 41.18 | 5.14 |
160 | 161 | 0.825425 | TGAGGTTGCATTTGCCGGAA | 60.825 | 50.000 | 5.05 | 0.00 | 41.18 | 4.30 |
161 | 162 | 0.316841 | GAGGTTGCATTTGCCGGAAA | 59.683 | 50.000 | 5.05 | 0.00 | 41.18 | 3.13 |
162 | 163 | 0.975887 | AGGTTGCATTTGCCGGAAAT | 59.024 | 45.000 | 5.05 | 5.80 | 41.18 | 2.17 |
163 | 164 | 2.165437 | GAGGTTGCATTTGCCGGAAATA | 59.835 | 45.455 | 5.05 | 0.00 | 41.18 | 1.40 |
164 | 165 | 2.166254 | AGGTTGCATTTGCCGGAAATAG | 59.834 | 45.455 | 5.05 | 0.00 | 41.18 | 1.73 |
165 | 166 | 2.165437 | GGTTGCATTTGCCGGAAATAGA | 59.835 | 45.455 | 5.05 | 0.00 | 41.18 | 1.98 |
166 | 167 | 3.179048 | GTTGCATTTGCCGGAAATAGAC | 58.821 | 45.455 | 5.05 | 4.78 | 41.18 | 2.59 |
167 | 168 | 2.722094 | TGCATTTGCCGGAAATAGACT | 58.278 | 42.857 | 5.05 | 0.00 | 41.18 | 3.24 |
168 | 169 | 3.088532 | TGCATTTGCCGGAAATAGACTT | 58.911 | 40.909 | 5.05 | 0.00 | 41.18 | 3.01 |
169 | 170 | 4.265893 | TGCATTTGCCGGAAATAGACTTA | 58.734 | 39.130 | 5.05 | 0.00 | 41.18 | 2.24 |
170 | 171 | 4.702612 | TGCATTTGCCGGAAATAGACTTAA | 59.297 | 37.500 | 5.05 | 0.00 | 41.18 | 1.85 |
171 | 172 | 5.184096 | TGCATTTGCCGGAAATAGACTTAAA | 59.816 | 36.000 | 5.05 | 0.00 | 41.18 | 1.52 |
172 | 173 | 5.515270 | GCATTTGCCGGAAATAGACTTAAAC | 59.485 | 40.000 | 5.05 | 0.00 | 32.65 | 2.01 |
173 | 174 | 4.932268 | TTGCCGGAAATAGACTTAAACG | 57.068 | 40.909 | 5.05 | 0.00 | 0.00 | 3.60 |
174 | 175 | 3.929094 | TGCCGGAAATAGACTTAAACGT | 58.071 | 40.909 | 5.05 | 0.00 | 0.00 | 3.99 |
175 | 176 | 4.317488 | TGCCGGAAATAGACTTAAACGTT | 58.683 | 39.130 | 5.05 | 0.00 | 0.00 | 3.99 |
176 | 177 | 5.477510 | TGCCGGAAATAGACTTAAACGTTA | 58.522 | 37.500 | 5.05 | 0.00 | 0.00 | 3.18 |
177 | 178 | 5.577945 | TGCCGGAAATAGACTTAAACGTTAG | 59.422 | 40.000 | 5.05 | 0.00 | 0.00 | 2.34 |
178 | 179 | 5.807011 | GCCGGAAATAGACTTAAACGTTAGA | 59.193 | 40.000 | 5.05 | 0.00 | 0.00 | 2.10 |
179 | 180 | 6.311200 | GCCGGAAATAGACTTAAACGTTAGAA | 59.689 | 38.462 | 5.05 | 0.00 | 0.00 | 2.10 |
180 | 181 | 7.148590 | GCCGGAAATAGACTTAAACGTTAGAAA | 60.149 | 37.037 | 5.05 | 0.00 | 0.00 | 2.52 |
181 | 182 | 8.711457 | CCGGAAATAGACTTAAACGTTAGAAAA | 58.289 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
221 | 222 | 8.240682 | AGTAGTAGCATAGCGATCTCTTATTTG | 58.759 | 37.037 | 0.00 | 0.00 | 0.00 | 2.32 |
222 | 223 | 6.987386 | AGTAGCATAGCGATCTCTTATTTGT | 58.013 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
223 | 224 | 7.437748 | AGTAGCATAGCGATCTCTTATTTGTT | 58.562 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
224 | 225 | 6.536731 | AGCATAGCGATCTCTTATTTGTTG | 57.463 | 37.500 | 0.00 | 0.00 | 0.00 | 3.33 |
225 | 226 | 5.468072 | AGCATAGCGATCTCTTATTTGTTGG | 59.532 | 40.000 | 0.00 | 0.00 | 0.00 | 3.77 |
226 | 227 | 5.334414 | GCATAGCGATCTCTTATTTGTTGGG | 60.334 | 44.000 | 0.00 | 0.00 | 0.00 | 4.12 |
227 | 228 | 4.487714 | AGCGATCTCTTATTTGTTGGGA | 57.512 | 40.909 | 0.00 | 0.00 | 0.00 | 4.37 |
228 | 229 | 4.192317 | AGCGATCTCTTATTTGTTGGGAC | 58.808 | 43.478 | 0.00 | 0.00 | 0.00 | 4.46 |
229 | 230 | 3.938963 | GCGATCTCTTATTTGTTGGGACA | 59.061 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
230 | 231 | 4.576463 | GCGATCTCTTATTTGTTGGGACAT | 59.424 | 41.667 | 0.00 | 0.00 | 39.30 | 3.06 |
231 | 232 | 5.066505 | GCGATCTCTTATTTGTTGGGACATT | 59.933 | 40.000 | 0.00 | 0.00 | 39.30 | 2.71 |
232 | 233 | 6.260050 | GCGATCTCTTATTTGTTGGGACATTA | 59.740 | 38.462 | 0.00 | 0.00 | 39.30 | 1.90 |
233 | 234 | 7.519008 | GCGATCTCTTATTTGTTGGGACATTAG | 60.519 | 40.741 | 0.00 | 0.00 | 39.30 | 1.73 |
234 | 235 | 7.519008 | CGATCTCTTATTTGTTGGGACATTAGC | 60.519 | 40.741 | 0.00 | 0.00 | 39.30 | 3.09 |
235 | 236 | 6.480763 | TCTCTTATTTGTTGGGACATTAGCA | 58.519 | 36.000 | 0.00 | 0.00 | 39.30 | 3.49 |
236 | 237 | 6.945435 | TCTCTTATTTGTTGGGACATTAGCAA | 59.055 | 34.615 | 0.00 | 0.00 | 39.30 | 3.91 |
237 | 238 | 7.450014 | TCTCTTATTTGTTGGGACATTAGCAAA | 59.550 | 33.333 | 0.00 | 0.00 | 39.30 | 3.68 |
238 | 239 | 8.133024 | TCTTATTTGTTGGGACATTAGCAAAT | 57.867 | 30.769 | 0.00 | 0.00 | 39.30 | 2.32 |
239 | 240 | 8.592809 | TCTTATTTGTTGGGACATTAGCAAATT | 58.407 | 29.630 | 0.00 | 0.00 | 39.30 | 1.82 |
240 | 241 | 9.868277 | CTTATTTGTTGGGACATTAGCAAATTA | 57.132 | 29.630 | 0.00 | 0.00 | 39.30 | 1.40 |
244 | 245 | 8.588290 | TTGTTGGGACATTAGCAAATTATAGT | 57.412 | 30.769 | 0.00 | 0.00 | 39.30 | 2.12 |
293 | 294 | 8.508875 | ACATGCAATTTGATTCAAAGGATTTTC | 58.491 | 29.630 | 16.34 | 2.81 | 35.03 | 2.29 |
484 | 488 | 6.584563 | CGAGAAAAGAACACTTTGTTTTTCCA | 59.415 | 34.615 | 10.50 | 0.00 | 41.28 | 3.53 |
542 | 546 | 3.347958 | TTGAAAAATGAGCACGACACC | 57.652 | 42.857 | 0.00 | 0.00 | 0.00 | 4.16 |
554 | 558 | 2.866460 | GCACGACACCGCAATCCTATAT | 60.866 | 50.000 | 0.00 | 0.00 | 39.95 | 0.86 |
555 | 559 | 3.390135 | CACGACACCGCAATCCTATATT | 58.610 | 45.455 | 0.00 | 0.00 | 39.95 | 1.28 |
598 | 603 | 2.403252 | ATTCCGCGAATCAAAGAGGT | 57.597 | 45.000 | 8.23 | 0.00 | 0.00 | 3.85 |
599 | 604 | 1.438651 | TTCCGCGAATCAAAGAGGTG | 58.561 | 50.000 | 8.23 | 0.00 | 0.00 | 4.00 |
602 | 607 | 1.640428 | CGCGAATCAAAGAGGTGCTA | 58.360 | 50.000 | 0.00 | 0.00 | 0.00 | 3.49 |
639 | 644 | 0.538977 | AGTGGCATGTGCAAGCTCTT | 60.539 | 50.000 | 7.36 | 0.00 | 44.36 | 2.85 |
673 | 678 | 2.420547 | CCCATTTCTTCATCCTCTGCGA | 60.421 | 50.000 | 0.00 | 0.00 | 0.00 | 5.10 |
708 | 714 | 0.972983 | ACTAGAGCCATGCACGACCT | 60.973 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
760 | 766 | 2.276869 | TGGAGTGAGTGATCCACCG | 58.723 | 57.895 | 0.00 | 0.00 | 40.70 | 4.94 |
801 | 807 | 1.619669 | GTCCCTCCCACCATCCCTT | 60.620 | 63.158 | 0.00 | 0.00 | 0.00 | 3.95 |
853 | 866 | 1.959042 | CGAGAATCCATCCAACCCAG | 58.041 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
1354 | 1367 | 2.203337 | GCCACCACAAGGAGCACA | 60.203 | 61.111 | 0.00 | 0.00 | 37.56 | 4.57 |
1428 | 1441 | 2.088423 | AGTGAGATGGTCGACTGAGAC | 58.912 | 52.381 | 16.46 | 5.33 | 40.25 | 3.36 |
1838 | 1858 | 9.246670 | ACATACATAAATGCATGCCACTATATT | 57.753 | 29.630 | 16.68 | 3.90 | 35.45 | 1.28 |
1901 | 1922 | 1.802960 | CTGATTATTAGGCCAGCTGCG | 59.197 | 52.381 | 8.66 | 2.70 | 42.61 | 5.18 |
2108 | 2180 | 9.832445 | TTTTAGTCTTCTATTAGCATACAAGGG | 57.168 | 33.333 | 0.00 | 0.00 | 0.00 | 3.95 |
2118 | 2190 | 2.961062 | AGCATACAAGGGATTGAATGGC | 59.039 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
2182 | 2254 | 4.002982 | CCATTCCCCATCACATATACACG | 58.997 | 47.826 | 0.00 | 0.00 | 0.00 | 4.49 |
2200 | 2272 | 1.344438 | ACGCCATGAGTGAGTTCTTCA | 59.656 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
2202 | 2274 | 2.158449 | CGCCATGAGTGAGTTCTTCAAC | 59.842 | 50.000 | 0.00 | 0.00 | 37.61 | 3.18 |
2314 | 2386 | 0.249699 | TCAAGAAAAGCTCGCCGACA | 60.250 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2385 | 2457 | 3.391382 | GGTCTGGGTGACTCGGGG | 61.391 | 72.222 | 0.00 | 0.00 | 44.74 | 5.73 |
2402 | 2474 | 0.179070 | GGGAGGATTGAGAAGCCGAC | 60.179 | 60.000 | 0.00 | 0.00 | 43.19 | 4.79 |
2411 | 2483 | 1.964223 | TGAGAAGCCGACAGAAGAAGT | 59.036 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
2412 | 2484 | 3.154710 | TGAGAAGCCGACAGAAGAAGTA | 58.845 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
2426 | 2498 | 3.710209 | AGAAGTAGCCAACAAGCTGAT | 57.290 | 42.857 | 0.00 | 0.00 | 44.67 | 2.90 |
2439 | 2511 | 1.489481 | AGCTGATGACATTCTCGGGA | 58.511 | 50.000 | 0.00 | 0.00 | 0.00 | 5.14 |
2445 | 2517 | 1.602237 | GACATTCTCGGGAAGGGCA | 59.398 | 57.895 | 11.43 | 0.00 | 40.58 | 5.36 |
2460 | 2532 | 2.113986 | GCAGTCACTTGCCAGGGT | 59.886 | 61.111 | 0.00 | 0.00 | 38.13 | 4.34 |
2496 | 2568 | 0.250295 | ACATTCCAGTCACCACACCG | 60.250 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
2706 | 2778 | 5.567430 | ACATATCGGTAGGTGTAGCTGATA | 58.433 | 41.667 | 0.00 | 0.00 | 32.21 | 2.15 |
2709 | 2781 | 3.894759 | TCGGTAGGTGTAGCTGATAACT | 58.105 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
2886 | 2958 | 8.781196 | AGTTATCACATATAAGCAATGCTGAAG | 58.219 | 33.333 | 9.14 | 0.00 | 39.62 | 3.02 |
2891 | 2963 | 6.412943 | CACATATAAGCAATGCTGAAGAAACG | 59.587 | 38.462 | 9.14 | 0.00 | 39.62 | 3.60 |
3032 | 3104 | 6.149142 | ACTTGAGAAGATCTGAAGCATTTCAC | 59.851 | 38.462 | 6.50 | 0.00 | 40.65 | 3.18 |
3095 | 3167 | 5.430089 | ACTTCCTCTTAATAGGCAATCAGGT | 59.570 | 40.000 | 1.97 | 0.00 | 36.51 | 4.00 |
3834 | 3909 | 6.612247 | TTATTGTCAATGTTGCTATACCCG | 57.388 | 37.500 | 8.39 | 0.00 | 0.00 | 5.28 |
3846 | 3921 | 2.094649 | GCTATACCCGTATGAGGCTGAC | 60.095 | 54.545 | 0.00 | 0.00 | 0.00 | 3.51 |
3934 | 4009 | 6.710597 | AGTCGTTATCACTTCCTAATAGCA | 57.289 | 37.500 | 0.00 | 0.00 | 0.00 | 3.49 |
3955 | 4030 | 7.934855 | AGCAATCAGAAACATCATTCTAACT | 57.065 | 32.000 | 0.00 | 0.00 | 37.56 | 2.24 |
4120 | 4198 | 4.274459 | GCTTTGTAGCCAGGTAATCAGATG | 59.726 | 45.833 | 0.00 | 0.00 | 41.74 | 2.90 |
4276 | 4354 | 3.002038 | ACTACTCCCTCCGTTCACTAG | 57.998 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
4326 | 4405 | 5.977635 | TGGACTACATACAGACTGAAATGG | 58.022 | 41.667 | 10.08 | 3.93 | 0.00 | 3.16 |
4465 | 4546 | 8.875803 | CAATGATGGTGTTTAATTTGGAATGAG | 58.124 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
4513 | 4594 | 1.328430 | GGTACCGCTGCTTAGGACCT | 61.328 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4653 | 4734 | 2.570752 | CTGGAGAGCCATGCAGGTATAT | 59.429 | 50.000 | 0.00 | 0.00 | 44.91 | 0.86 |
4713 | 4794 | 8.740906 | TGTTCTTCAGACTTCTTATAGGTACTG | 58.259 | 37.037 | 0.00 | 0.00 | 41.52 | 2.74 |
4717 | 4798 | 8.824756 | TTCAGACTTCTTATAGGTACTGATGT | 57.175 | 34.615 | 0.00 | 0.00 | 41.52 | 3.06 |
4798 | 4879 | 5.335661 | GGACATAAACCACATTGTCAACCTC | 60.336 | 44.000 | 4.52 | 0.00 | 40.14 | 3.85 |
5436 | 5521 | 5.468540 | TCCTTTTCATGAAGTCGAAGAGA | 57.531 | 39.130 | 15.95 | 10.19 | 36.95 | 3.10 |
5542 | 5627 | 5.411781 | AGAAAGCATGCACTACACTACTAC | 58.588 | 41.667 | 21.98 | 0.00 | 0.00 | 2.73 |
5599 | 5684 | 4.165779 | GCATTCAAATGTACCGTTTGGAG | 58.834 | 43.478 | 16.28 | 10.14 | 39.82 | 3.86 |
5600 | 5685 | 4.083003 | GCATTCAAATGTACCGTTTGGAGA | 60.083 | 41.667 | 16.28 | 7.47 | 39.82 | 3.71 |
5601 | 5686 | 5.631026 | CATTCAAATGTACCGTTTGGAGAG | 58.369 | 41.667 | 16.28 | 5.85 | 39.82 | 3.20 |
5676 | 5764 | 9.362151 | TCCAACTAGTTTTCCATGTAAGAATTT | 57.638 | 29.630 | 5.07 | 0.00 | 0.00 | 1.82 |
5937 | 6025 | 3.439857 | AGCTCAACTAGGGATGCAAAA | 57.560 | 42.857 | 0.00 | 0.00 | 0.00 | 2.44 |
6174 | 6269 | 4.839668 | AGTAAGCACATACGAGATCCTC | 57.160 | 45.455 | 0.00 | 0.00 | 0.00 | 3.71 |
6204 | 6299 | 6.183360 | ACAGATTGTTGATGTTGCAGTTAACA | 60.183 | 34.615 | 8.61 | 0.00 | 43.93 | 2.41 |
6265 | 6360 | 9.838975 | TGTTCAAACATAGCATATTACAACTTG | 57.161 | 29.630 | 0.00 | 0.00 | 33.17 | 3.16 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
20 | 21 | 2.794103 | TCATGCATGTGCTTTAGTGGT | 58.206 | 42.857 | 25.43 | 0.00 | 42.66 | 4.16 |
59 | 60 | 4.597004 | ACCTTGACCGACTTAGATGTAGA | 58.403 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
60 | 61 | 4.985538 | ACCTTGACCGACTTAGATGTAG | 57.014 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
62 | 63 | 3.833070 | AGAACCTTGACCGACTTAGATGT | 59.167 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
63 | 64 | 4.457834 | AGAACCTTGACCGACTTAGATG | 57.542 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
64 | 65 | 5.246429 | AGAAAGAACCTTGACCGACTTAGAT | 59.754 | 40.000 | 0.00 | 0.00 | 0.00 | 1.98 |
65 | 66 | 4.587684 | AGAAAGAACCTTGACCGACTTAGA | 59.412 | 41.667 | 0.00 | 0.00 | 0.00 | 2.10 |
66 | 67 | 4.884247 | AGAAAGAACCTTGACCGACTTAG | 58.116 | 43.478 | 0.00 | 0.00 | 0.00 | 2.18 |
67 | 68 | 4.950205 | AGAAAGAACCTTGACCGACTTA | 57.050 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
68 | 69 | 3.840124 | AGAAAGAACCTTGACCGACTT | 57.160 | 42.857 | 0.00 | 0.00 | 0.00 | 3.01 |
69 | 70 | 3.840124 | AAGAAAGAACCTTGACCGACT | 57.160 | 42.857 | 0.00 | 0.00 | 0.00 | 4.18 |
70 | 71 | 4.895224 | AAAAGAAAGAACCTTGACCGAC | 57.105 | 40.909 | 0.00 | 0.00 | 0.00 | 4.79 |
71 | 72 | 4.034742 | CGAAAAAGAAAGAACCTTGACCGA | 59.965 | 41.667 | 0.00 | 0.00 | 0.00 | 4.69 |
72 | 73 | 4.034742 | TCGAAAAAGAAAGAACCTTGACCG | 59.965 | 41.667 | 0.00 | 0.00 | 0.00 | 4.79 |
73 | 74 | 5.494632 | TCGAAAAAGAAAGAACCTTGACC | 57.505 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
74 | 75 | 5.455849 | GCTTCGAAAAAGAAAGAACCTTGAC | 59.544 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
75 | 76 | 5.449999 | GGCTTCGAAAAAGAAAGAACCTTGA | 60.450 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
76 | 77 | 4.740205 | GGCTTCGAAAAAGAAAGAACCTTG | 59.260 | 41.667 | 0.00 | 0.00 | 0.00 | 3.61 |
77 | 78 | 4.401202 | TGGCTTCGAAAAAGAAAGAACCTT | 59.599 | 37.500 | 0.00 | 0.00 | 0.00 | 3.50 |
78 | 79 | 3.951680 | TGGCTTCGAAAAAGAAAGAACCT | 59.048 | 39.130 | 0.00 | 0.00 | 0.00 | 3.50 |
79 | 80 | 4.202020 | ACTGGCTTCGAAAAAGAAAGAACC | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 3.62 |
80 | 81 | 4.921547 | ACTGGCTTCGAAAAAGAAAGAAC | 58.078 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
81 | 82 | 5.576447 | AACTGGCTTCGAAAAAGAAAGAA | 57.424 | 34.783 | 0.00 | 0.00 | 0.00 | 2.52 |
82 | 83 | 5.576447 | AAACTGGCTTCGAAAAAGAAAGA | 57.424 | 34.783 | 0.00 | 0.00 | 0.00 | 2.52 |
83 | 84 | 5.804979 | TCAAAACTGGCTTCGAAAAAGAAAG | 59.195 | 36.000 | 0.00 | 0.00 | 0.00 | 2.62 |
84 | 85 | 5.715070 | TCAAAACTGGCTTCGAAAAAGAAA | 58.285 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
85 | 86 | 5.317733 | TCAAAACTGGCTTCGAAAAAGAA | 57.682 | 34.783 | 0.00 | 0.00 | 0.00 | 2.52 |
86 | 87 | 4.974368 | TCAAAACTGGCTTCGAAAAAGA | 57.026 | 36.364 | 0.00 | 0.00 | 0.00 | 2.52 |
87 | 88 | 6.401955 | TTTTCAAAACTGGCTTCGAAAAAG | 57.598 | 33.333 | 0.00 | 0.00 | 31.45 | 2.27 |
88 | 89 | 6.787085 | TTTTTCAAAACTGGCTTCGAAAAA | 57.213 | 29.167 | 0.00 | 0.00 | 39.00 | 1.94 |
89 | 90 | 6.674278 | GCATTTTTCAAAACTGGCTTCGAAAA | 60.674 | 34.615 | 0.00 | 0.00 | 32.25 | 2.29 |
90 | 91 | 5.220567 | GCATTTTTCAAAACTGGCTTCGAAA | 60.221 | 36.000 | 0.00 | 0.00 | 0.00 | 3.46 |
91 | 92 | 4.269844 | GCATTTTTCAAAACTGGCTTCGAA | 59.730 | 37.500 | 0.00 | 0.00 | 0.00 | 3.71 |
92 | 93 | 3.801594 | GCATTTTTCAAAACTGGCTTCGA | 59.198 | 39.130 | 2.70 | 0.00 | 0.00 | 3.71 |
93 | 94 | 3.555139 | TGCATTTTTCAAAACTGGCTTCG | 59.445 | 39.130 | 2.70 | 0.00 | 0.00 | 3.79 |
94 | 95 | 5.482686 | TTGCATTTTTCAAAACTGGCTTC | 57.517 | 34.783 | 2.70 | 0.00 | 0.00 | 3.86 |
95 | 96 | 6.453926 | AATTGCATTTTTCAAAACTGGCTT | 57.546 | 29.167 | 2.70 | 0.00 | 0.00 | 4.35 |
96 | 97 | 6.095160 | TGAAATTGCATTTTTCAAAACTGGCT | 59.905 | 30.769 | 18.03 | 0.00 | 39.46 | 4.75 |
97 | 98 | 6.264088 | TGAAATTGCATTTTTCAAAACTGGC | 58.736 | 32.000 | 18.03 | 0.00 | 39.46 | 4.85 |
98 | 99 | 6.415573 | GCTGAAATTGCATTTTTCAAAACTGG | 59.584 | 34.615 | 19.77 | 11.83 | 41.23 | 4.00 |
99 | 100 | 7.190871 | AGCTGAAATTGCATTTTTCAAAACTG | 58.809 | 30.769 | 19.77 | 12.31 | 41.23 | 3.16 |
100 | 101 | 7.324354 | AGCTGAAATTGCATTTTTCAAAACT | 57.676 | 28.000 | 19.77 | 15.65 | 41.23 | 2.66 |
101 | 102 | 7.697291 | TGAAGCTGAAATTGCATTTTTCAAAAC | 59.303 | 29.630 | 19.77 | 14.31 | 41.23 | 2.43 |
102 | 103 | 7.697291 | GTGAAGCTGAAATTGCATTTTTCAAAA | 59.303 | 29.630 | 19.77 | 7.19 | 41.23 | 2.44 |
103 | 104 | 7.066043 | AGTGAAGCTGAAATTGCATTTTTCAAA | 59.934 | 29.630 | 19.77 | 5.25 | 41.23 | 2.69 |
104 | 105 | 6.539464 | AGTGAAGCTGAAATTGCATTTTTCAA | 59.461 | 30.769 | 19.77 | 7.78 | 41.23 | 2.69 |
105 | 106 | 6.050432 | AGTGAAGCTGAAATTGCATTTTTCA | 58.950 | 32.000 | 18.78 | 18.78 | 39.96 | 2.69 |
106 | 107 | 6.535274 | AGTGAAGCTGAAATTGCATTTTTC | 57.465 | 33.333 | 13.14 | 13.14 | 34.40 | 2.29 |
107 | 108 | 6.930667 | AAGTGAAGCTGAAATTGCATTTTT | 57.069 | 29.167 | 7.92 | 1.73 | 31.47 | 1.94 |
108 | 109 | 6.930667 | AAAGTGAAGCTGAAATTGCATTTT | 57.069 | 29.167 | 6.29 | 6.29 | 31.47 | 1.82 |
109 | 110 | 6.539464 | TGAAAAGTGAAGCTGAAATTGCATTT | 59.461 | 30.769 | 0.00 | 0.00 | 34.64 | 2.32 |
110 | 111 | 6.018507 | GTGAAAAGTGAAGCTGAAATTGCATT | 60.019 | 34.615 | 0.00 | 0.00 | 0.00 | 3.56 |
111 | 112 | 5.464389 | GTGAAAAGTGAAGCTGAAATTGCAT | 59.536 | 36.000 | 0.00 | 0.00 | 0.00 | 3.96 |
112 | 113 | 4.805192 | GTGAAAAGTGAAGCTGAAATTGCA | 59.195 | 37.500 | 0.00 | 0.00 | 0.00 | 4.08 |
113 | 114 | 4.805192 | TGTGAAAAGTGAAGCTGAAATTGC | 59.195 | 37.500 | 0.00 | 0.00 | 0.00 | 3.56 |
114 | 115 | 6.890663 | TTGTGAAAAGTGAAGCTGAAATTG | 57.109 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
115 | 116 | 7.603784 | AGTTTTGTGAAAAGTGAAGCTGAAATT | 59.396 | 29.630 | 0.00 | 0.00 | 32.98 | 1.82 |
116 | 117 | 7.099120 | AGTTTTGTGAAAAGTGAAGCTGAAAT | 58.901 | 30.769 | 0.00 | 0.00 | 32.98 | 2.17 |
117 | 118 | 6.454795 | AGTTTTGTGAAAAGTGAAGCTGAAA | 58.545 | 32.000 | 0.00 | 0.00 | 32.98 | 2.69 |
118 | 119 | 6.024552 | AGTTTTGTGAAAAGTGAAGCTGAA | 57.975 | 33.333 | 0.00 | 0.00 | 32.98 | 3.02 |
119 | 120 | 5.643379 | AGTTTTGTGAAAAGTGAAGCTGA | 57.357 | 34.783 | 0.00 | 0.00 | 32.98 | 4.26 |
127 | 128 | 4.021544 | TGCAACCTCAGTTTTGTGAAAAGT | 60.022 | 37.500 | 0.00 | 0.00 | 32.45 | 2.66 |
128 | 129 | 4.493547 | TGCAACCTCAGTTTTGTGAAAAG | 58.506 | 39.130 | 0.00 | 0.00 | 32.45 | 2.27 |
129 | 130 | 4.527509 | TGCAACCTCAGTTTTGTGAAAA | 57.472 | 36.364 | 0.00 | 0.00 | 32.45 | 2.29 |
130 | 131 | 4.734398 | ATGCAACCTCAGTTTTGTGAAA | 57.266 | 36.364 | 0.00 | 0.00 | 32.45 | 2.69 |
131 | 132 | 4.734398 | AATGCAACCTCAGTTTTGTGAA | 57.266 | 36.364 | 0.00 | 0.00 | 32.45 | 3.18 |
132 | 133 | 4.431809 | CAAATGCAACCTCAGTTTTGTGA | 58.568 | 39.130 | 0.00 | 0.00 | 32.45 | 3.58 |
133 | 134 | 3.001533 | GCAAATGCAACCTCAGTTTTGTG | 59.998 | 43.478 | 0.00 | 0.00 | 41.59 | 3.33 |
134 | 135 | 3.197265 | GCAAATGCAACCTCAGTTTTGT | 58.803 | 40.909 | 0.00 | 0.00 | 41.59 | 2.83 |
135 | 136 | 2.545106 | GGCAAATGCAACCTCAGTTTTG | 59.455 | 45.455 | 7.80 | 0.00 | 44.36 | 2.44 |
136 | 137 | 2.802774 | CGGCAAATGCAACCTCAGTTTT | 60.803 | 45.455 | 7.80 | 0.00 | 44.36 | 2.43 |
137 | 138 | 1.269726 | CGGCAAATGCAACCTCAGTTT | 60.270 | 47.619 | 7.80 | 0.00 | 44.36 | 2.66 |
138 | 139 | 0.314935 | CGGCAAATGCAACCTCAGTT | 59.685 | 50.000 | 7.80 | 0.00 | 44.36 | 3.16 |
139 | 140 | 1.526575 | CCGGCAAATGCAACCTCAGT | 61.527 | 55.000 | 7.80 | 0.00 | 44.36 | 3.41 |
140 | 141 | 1.213537 | CCGGCAAATGCAACCTCAG | 59.786 | 57.895 | 7.80 | 0.00 | 44.36 | 3.35 |
141 | 142 | 0.825425 | TTCCGGCAAATGCAACCTCA | 60.825 | 50.000 | 7.80 | 0.00 | 44.36 | 3.86 |
142 | 143 | 0.316841 | TTTCCGGCAAATGCAACCTC | 59.683 | 50.000 | 7.80 | 0.00 | 44.36 | 3.85 |
143 | 144 | 0.975887 | ATTTCCGGCAAATGCAACCT | 59.024 | 45.000 | 7.80 | 0.00 | 44.36 | 3.50 |
144 | 145 | 2.165437 | TCTATTTCCGGCAAATGCAACC | 59.835 | 45.455 | 17.09 | 0.00 | 44.36 | 3.77 |
145 | 146 | 3.119495 | AGTCTATTTCCGGCAAATGCAAC | 60.119 | 43.478 | 17.09 | 12.96 | 44.36 | 4.17 |
146 | 147 | 3.088532 | AGTCTATTTCCGGCAAATGCAA | 58.911 | 40.909 | 17.09 | 0.00 | 44.36 | 4.08 |
147 | 148 | 2.722094 | AGTCTATTTCCGGCAAATGCA | 58.278 | 42.857 | 17.09 | 0.00 | 44.36 | 3.96 |
148 | 149 | 3.782889 | AAGTCTATTTCCGGCAAATGC | 57.217 | 42.857 | 17.09 | 0.00 | 35.34 | 3.56 |
149 | 150 | 5.737290 | CGTTTAAGTCTATTTCCGGCAAATG | 59.263 | 40.000 | 17.09 | 10.14 | 35.34 | 2.32 |
150 | 151 | 5.413523 | ACGTTTAAGTCTATTTCCGGCAAAT | 59.586 | 36.000 | 13.85 | 13.85 | 38.35 | 2.32 |
151 | 152 | 4.756135 | ACGTTTAAGTCTATTTCCGGCAAA | 59.244 | 37.500 | 0.00 | 0.00 | 0.00 | 3.68 |
152 | 153 | 4.317488 | ACGTTTAAGTCTATTTCCGGCAA | 58.683 | 39.130 | 0.00 | 0.00 | 0.00 | 4.52 |
153 | 154 | 3.929094 | ACGTTTAAGTCTATTTCCGGCA | 58.071 | 40.909 | 0.00 | 0.00 | 0.00 | 5.69 |
154 | 155 | 4.934075 | AACGTTTAAGTCTATTTCCGGC | 57.066 | 40.909 | 0.00 | 0.00 | 0.00 | 6.13 |
155 | 156 | 7.816945 | TTCTAACGTTTAAGTCTATTTCCGG | 57.183 | 36.000 | 5.91 | 0.00 | 0.00 | 5.14 |
171 | 172 | 9.490379 | ACTAAGTCAATCAAGATTTTCTAACGT | 57.510 | 29.630 | 0.00 | 0.00 | 0.00 | 3.99 |
178 | 179 | 9.944376 | TGCTACTACTAAGTCAATCAAGATTTT | 57.056 | 29.630 | 0.00 | 0.00 | 37.15 | 1.82 |
182 | 183 | 8.353684 | GCTATGCTACTACTAAGTCAATCAAGA | 58.646 | 37.037 | 0.00 | 0.00 | 37.15 | 3.02 |
183 | 184 | 7.324856 | CGCTATGCTACTACTAAGTCAATCAAG | 59.675 | 40.741 | 0.00 | 0.00 | 37.15 | 3.02 |
184 | 185 | 7.012989 | TCGCTATGCTACTACTAAGTCAATCAA | 59.987 | 37.037 | 0.00 | 0.00 | 37.15 | 2.57 |
185 | 186 | 6.485648 | TCGCTATGCTACTACTAAGTCAATCA | 59.514 | 38.462 | 0.00 | 0.00 | 37.15 | 2.57 |
186 | 187 | 6.900189 | TCGCTATGCTACTACTAAGTCAATC | 58.100 | 40.000 | 0.00 | 0.00 | 37.15 | 2.67 |
187 | 188 | 6.879276 | TCGCTATGCTACTACTAAGTCAAT | 57.121 | 37.500 | 0.00 | 0.00 | 37.15 | 2.57 |
188 | 189 | 6.711194 | AGATCGCTATGCTACTACTAAGTCAA | 59.289 | 38.462 | 0.00 | 0.00 | 37.15 | 3.18 |
189 | 190 | 6.231951 | AGATCGCTATGCTACTACTAAGTCA | 58.768 | 40.000 | 0.00 | 0.00 | 37.15 | 3.41 |
190 | 191 | 6.592607 | AGAGATCGCTATGCTACTACTAAGTC | 59.407 | 42.308 | 0.00 | 0.00 | 37.15 | 3.01 |
191 | 192 | 6.469410 | AGAGATCGCTATGCTACTACTAAGT | 58.531 | 40.000 | 0.00 | 0.00 | 39.91 | 2.24 |
221 | 222 | 7.996385 | ACACTATAATTTGCTAATGTCCCAAC | 58.004 | 34.615 | 0.00 | 0.00 | 0.00 | 3.77 |
222 | 223 | 7.011950 | CGACACTATAATTTGCTAATGTCCCAA | 59.988 | 37.037 | 0.00 | 0.00 | 33.28 | 4.12 |
223 | 224 | 6.481976 | CGACACTATAATTTGCTAATGTCCCA | 59.518 | 38.462 | 0.00 | 0.00 | 33.28 | 4.37 |
224 | 225 | 6.073222 | CCGACACTATAATTTGCTAATGTCCC | 60.073 | 42.308 | 0.00 | 0.00 | 33.28 | 4.46 |
225 | 226 | 6.482308 | ACCGACACTATAATTTGCTAATGTCC | 59.518 | 38.462 | 0.00 | 0.00 | 33.28 | 4.02 |
226 | 227 | 7.345192 | CACCGACACTATAATTTGCTAATGTC | 58.655 | 38.462 | 0.00 | 0.00 | 33.48 | 3.06 |
227 | 228 | 6.260050 | CCACCGACACTATAATTTGCTAATGT | 59.740 | 38.462 | 0.00 | 0.00 | 0.00 | 2.71 |
228 | 229 | 6.260050 | ACCACCGACACTATAATTTGCTAATG | 59.740 | 38.462 | 0.00 | 0.00 | 0.00 | 1.90 |
229 | 230 | 6.354130 | ACCACCGACACTATAATTTGCTAAT | 58.646 | 36.000 | 0.00 | 0.00 | 0.00 | 1.73 |
230 | 231 | 5.736813 | ACCACCGACACTATAATTTGCTAA | 58.263 | 37.500 | 0.00 | 0.00 | 0.00 | 3.09 |
231 | 232 | 5.347620 | ACCACCGACACTATAATTTGCTA | 57.652 | 39.130 | 0.00 | 0.00 | 0.00 | 3.49 |
232 | 233 | 4.216411 | ACCACCGACACTATAATTTGCT | 57.784 | 40.909 | 0.00 | 0.00 | 0.00 | 3.91 |
233 | 234 | 4.957759 | AACCACCGACACTATAATTTGC | 57.042 | 40.909 | 0.00 | 0.00 | 0.00 | 3.68 |
234 | 235 | 9.498307 | GAAAATAACCACCGACACTATAATTTG | 57.502 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
235 | 236 | 8.392612 | CGAAAATAACCACCGACACTATAATTT | 58.607 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
236 | 237 | 7.466320 | GCGAAAATAACCACCGACACTATAATT | 60.466 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
237 | 238 | 6.018507 | GCGAAAATAACCACCGACACTATAAT | 60.019 | 38.462 | 0.00 | 0.00 | 0.00 | 1.28 |
238 | 239 | 5.291614 | GCGAAAATAACCACCGACACTATAA | 59.708 | 40.000 | 0.00 | 0.00 | 0.00 | 0.98 |
239 | 240 | 4.805192 | GCGAAAATAACCACCGACACTATA | 59.195 | 41.667 | 0.00 | 0.00 | 0.00 | 1.31 |
240 | 241 | 3.619929 | GCGAAAATAACCACCGACACTAT | 59.380 | 43.478 | 0.00 | 0.00 | 0.00 | 2.12 |
241 | 242 | 2.995258 | GCGAAAATAACCACCGACACTA | 59.005 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
242 | 243 | 1.802365 | GCGAAAATAACCACCGACACT | 59.198 | 47.619 | 0.00 | 0.00 | 0.00 | 3.55 |
243 | 244 | 1.532007 | TGCGAAAATAACCACCGACAC | 59.468 | 47.619 | 0.00 | 0.00 | 0.00 | 3.67 |
244 | 245 | 1.880271 | TGCGAAAATAACCACCGACA | 58.120 | 45.000 | 0.00 | 0.00 | 0.00 | 4.35 |
293 | 294 | 9.893305 | GGATTATAACCATCCAAAATTTCTACG | 57.107 | 33.333 | 0.00 | 0.00 | 40.21 | 3.51 |
338 | 339 | 4.900635 | ATCCTATGAATCAAACAACCGC | 57.099 | 40.909 | 0.00 | 0.00 | 0.00 | 5.68 |
339 | 340 | 6.435430 | TCAATCCTATGAATCAAACAACCG | 57.565 | 37.500 | 0.00 | 0.00 | 0.00 | 4.44 |
470 | 474 | 4.431809 | TGCATCACTGGAAAAACAAAGTG | 58.568 | 39.130 | 0.00 | 0.00 | 41.11 | 3.16 |
484 | 488 | 4.669206 | TGGTTTGTTTGATTGCATCACT | 57.331 | 36.364 | 0.00 | 0.00 | 39.39 | 3.41 |
524 | 528 | 1.950472 | CGGTGTCGTGCTCATTTTTC | 58.050 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
598 | 603 | 1.892474 | GGTTCACTGGCCATTTTAGCA | 59.108 | 47.619 | 5.51 | 0.00 | 0.00 | 3.49 |
599 | 604 | 1.135402 | CGGTTCACTGGCCATTTTAGC | 60.135 | 52.381 | 5.51 | 1.26 | 0.00 | 3.09 |
602 | 607 | 1.247567 | CTCGGTTCACTGGCCATTTT | 58.752 | 50.000 | 5.51 | 0.00 | 0.00 | 1.82 |
639 | 644 | 0.764752 | AAATGGGCCCACGGGAAAAA | 60.765 | 50.000 | 31.51 | 0.00 | 37.50 | 1.94 |
673 | 678 | 4.453819 | GCTCTAGTGCAAAGAAATGTGTCT | 59.546 | 41.667 | 11.82 | 0.00 | 0.00 | 3.41 |
708 | 714 | 0.981183 | ACGATGGTGGAGGCTGTTAA | 59.019 | 50.000 | 0.00 | 0.00 | 0.00 | 2.01 |
760 | 766 | 4.684703 | CGTGTTTTATAGGACGGATGGATC | 59.315 | 45.833 | 0.00 | 0.00 | 0.00 | 3.36 |
801 | 807 | 0.041833 | CTCCCCAGTTGAGAGAGGGA | 59.958 | 60.000 | 0.00 | 0.00 | 44.30 | 4.20 |
1263 | 1276 | 2.280797 | TGGAACTGTGACTGCGGC | 60.281 | 61.111 | 0.00 | 0.00 | 0.00 | 6.53 |
1265 | 1278 | 2.320587 | GCCTGGAACTGTGACTGCG | 61.321 | 63.158 | 0.00 | 0.00 | 0.00 | 5.18 |
1354 | 1367 | 0.250038 | CTGCATACCTGTATGGCGCT | 60.250 | 55.000 | 16.71 | 0.00 | 42.32 | 5.92 |
1428 | 1441 | 1.652124 | CAACGGAACATACGAACCTCG | 59.348 | 52.381 | 0.00 | 0.00 | 46.93 | 4.63 |
1838 | 1858 | 9.273016 | GCTTAATTAACAAGCATATCTAGGACA | 57.727 | 33.333 | 15.43 | 0.00 | 46.17 | 4.02 |
2000 | 2021 | 9.396022 | CAACAACTACTGGACTAATTTGGATAT | 57.604 | 33.333 | 0.00 | 0.00 | 0.00 | 1.63 |
2083 | 2147 | 9.209048 | TCCCTTGTATGCTAATAGAAGACTAAA | 57.791 | 33.333 | 4.65 | 0.00 | 40.47 | 1.85 |
2108 | 2180 | 3.627577 | AGTTGGTATGACGCCATTCAATC | 59.372 | 43.478 | 0.00 | 0.00 | 35.71 | 2.67 |
2118 | 2190 | 3.595173 | TGTGGAATGAGTTGGTATGACG | 58.405 | 45.455 | 0.00 | 0.00 | 0.00 | 4.35 |
2182 | 2254 | 2.485814 | GGTTGAAGAACTCACTCATGGC | 59.514 | 50.000 | 0.00 | 0.00 | 32.21 | 4.40 |
2200 | 2272 | 0.877071 | TCTACGCGACTTCGAAGGTT | 59.123 | 50.000 | 27.86 | 9.11 | 43.02 | 3.50 |
2202 | 2274 | 1.973138 | TTTCTACGCGACTTCGAAGG | 58.027 | 50.000 | 27.86 | 13.02 | 43.02 | 3.46 |
2278 | 2350 | 3.938963 | TCTTGACTTTCGTGTTCTTGCTT | 59.061 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
2385 | 2457 | 1.478510 | TCTGTCGGCTTCTCAATCCTC | 59.521 | 52.381 | 0.00 | 0.00 | 0.00 | 3.71 |
2402 | 2474 | 3.188048 | CAGCTTGTTGGCTACTTCTTCTG | 59.812 | 47.826 | 0.01 | 0.00 | 41.00 | 3.02 |
2411 | 2483 | 2.857186 | TGTCATCAGCTTGTTGGCTA | 57.143 | 45.000 | 0.00 | 0.00 | 41.00 | 3.93 |
2412 | 2484 | 2.211250 | ATGTCATCAGCTTGTTGGCT | 57.789 | 45.000 | 0.00 | 0.00 | 44.10 | 4.75 |
2426 | 2498 | 1.198094 | TGCCCTTCCCGAGAATGTCA | 61.198 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
2445 | 2517 | 0.178903 | TCCTACCCTGGCAAGTGACT | 60.179 | 55.000 | 0.31 | 0.00 | 0.00 | 3.41 |
2460 | 2532 | 1.847328 | TGTTGATCCTCACGCTCCTA | 58.153 | 50.000 | 0.00 | 0.00 | 0.00 | 2.94 |
2496 | 2568 | 2.804090 | GCGAACACGGTCCTCGAC | 60.804 | 66.667 | 11.43 | 1.47 | 42.43 | 4.20 |
2685 | 2757 | 6.246919 | AGTTATCAGCTACACCTACCGATAT | 58.753 | 40.000 | 0.00 | 0.00 | 0.00 | 1.63 |
2706 | 2778 | 5.127031 | ACAAAGCAGAACAACATACCAAGTT | 59.873 | 36.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2709 | 2781 | 4.736168 | GCACAAAGCAGAACAACATACCAA | 60.736 | 41.667 | 0.00 | 0.00 | 44.79 | 3.67 |
2904 | 2976 | 3.088259 | TTGCTGTAACCTGCAACGT | 57.912 | 47.368 | 3.33 | 0.00 | 46.52 | 3.99 |
3032 | 3104 | 4.519350 | GGAACCTTTGGAGTTTTGGTAGAG | 59.481 | 45.833 | 0.00 | 0.00 | 0.00 | 2.43 |
3095 | 3167 | 2.223735 | GCTCCTCGACATCGTCCATTAA | 60.224 | 50.000 | 0.54 | 0.00 | 40.80 | 1.40 |
3834 | 3909 | 1.134965 | ACAGAAGCGTCAGCCTCATAC | 60.135 | 52.381 | 1.61 | 0.00 | 46.67 | 2.39 |
3846 | 3921 | 4.452455 | AGAACACCTGAATAAACAGAAGCG | 59.548 | 41.667 | 0.00 | 0.00 | 39.94 | 4.68 |
3934 | 4009 | 7.637511 | AGGGAGTTAGAATGATGTTTCTGATT | 58.362 | 34.615 | 0.00 | 0.00 | 36.63 | 2.57 |
3955 | 4030 | 3.325716 | AGCGAAGTACCTTGTAAAAGGGA | 59.674 | 43.478 | 16.40 | 4.25 | 44.27 | 4.20 |
4117 | 4195 | 9.713740 | CTTGACAAACATTTAGCTTCTATCATC | 57.286 | 33.333 | 0.00 | 0.00 | 0.00 | 2.92 |
4120 | 4198 | 9.548208 | GAACTTGACAAACATTTAGCTTCTATC | 57.452 | 33.333 | 0.00 | 0.00 | 0.00 | 2.08 |
4315 | 4394 | 4.097892 | GTGTTTGTTCACCCATTTCAGTCT | 59.902 | 41.667 | 0.00 | 0.00 | 32.81 | 3.24 |
4326 | 4405 | 4.206200 | CGCATTTTAGTGTGTTTGTTCACC | 59.794 | 41.667 | 0.00 | 0.00 | 37.51 | 4.02 |
4378 | 4459 | 7.931948 | CCCTCCGTTCACTATTATAAGATGTTT | 59.068 | 37.037 | 0.00 | 0.00 | 0.00 | 2.83 |
4473 | 4554 | 8.691797 | GGTACCTATTTTCCAGCAAATCATTAA | 58.308 | 33.333 | 4.06 | 0.00 | 0.00 | 1.40 |
4513 | 4594 | 6.427441 | TGTAATAACATGCCAGGTATTCCAA | 58.573 | 36.000 | 0.00 | 0.00 | 35.89 | 3.53 |
4653 | 4734 | 5.069318 | TGTGGCAAGTCATGTTCAATCTTA | 58.931 | 37.500 | 0.00 | 0.00 | 0.00 | 2.10 |
4717 | 4798 | 9.158233 | CAGGACAACCGTAATAATAAGAAAGAA | 57.842 | 33.333 | 0.00 | 0.00 | 41.83 | 2.52 |
4798 | 4879 | 0.319211 | TTGCTGACACGTACTTCCCG | 60.319 | 55.000 | 0.00 | 0.00 | 0.00 | 5.14 |
5335 | 5420 | 4.323028 | CCAGCCTGACAGAGAAGTTATTCA | 60.323 | 45.833 | 3.32 | 0.00 | 37.94 | 2.57 |
5339 | 5424 | 2.828520 | CTCCAGCCTGACAGAGAAGTTA | 59.171 | 50.000 | 3.32 | 0.00 | 0.00 | 2.24 |
5436 | 5521 | 0.676782 | GACGCCCCATGCTGTTAGTT | 60.677 | 55.000 | 0.00 | 0.00 | 38.05 | 2.24 |
5600 | 5685 | 9.851686 | TGTTATTATTTGCATATCACTTCTCCT | 57.148 | 29.630 | 0.00 | 0.00 | 0.00 | 3.69 |
5601 | 5686 | 9.884465 | GTGTTATTATTTGCATATCACTTCTCC | 57.116 | 33.333 | 0.00 | 0.00 | 29.58 | 3.71 |
5676 | 5764 | 9.865321 | GACTTCAGTTTACATTATACCAGTACA | 57.135 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
6174 | 6269 | 6.105657 | TGCAACATCAACAATCTGTATACG | 57.894 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
6204 | 6299 | 7.310664 | CAAAGAAGACACAATGCTAATGTCAT | 58.689 | 34.615 | 6.40 | 0.00 | 44.26 | 3.06 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.