Multiple sequence alignment - TraesCS7D01G231100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G231100 | chr7D | 100.000 | 4858 | 0 | 0 | 1 | 4858 | 192162776 | 192157919 | 0.000000e+00 | 8972.0 |
1 | TraesCS7D01G231100 | chr7D | 94.411 | 501 | 24 | 2 | 2596 | 3093 | 65433811 | 65433312 | 0.000000e+00 | 767.0 |
2 | TraesCS7D01G231100 | chr7D | 100.000 | 53 | 0 | 0 | 2152 | 2204 | 506135751 | 506135803 | 1.110000e-16 | 99.0 |
3 | TraesCS7D01G231100 | chr7B | 96.888 | 1864 | 39 | 5 | 700 | 2563 | 337642694 | 337640850 | 0.000000e+00 | 3103.0 |
4 | TraesCS7D01G231100 | chr7B | 93.933 | 1780 | 81 | 15 | 3093 | 4858 | 337640857 | 337639091 | 0.000000e+00 | 2663.0 |
5 | TraesCS7D01G231100 | chr7B | 93.781 | 611 | 27 | 4 | 42 | 649 | 337643291 | 337642689 | 0.000000e+00 | 907.0 |
6 | TraesCS7D01G231100 | chr7B | 96.154 | 52 | 2 | 0 | 2153 | 2204 | 158926563 | 158926512 | 8.660000e-13 | 86.1 |
7 | TraesCS7D01G231100 | chr7A | 92.370 | 2110 | 137 | 18 | 42 | 2144 | 201547814 | 201545722 | 0.000000e+00 | 2983.0 |
8 | TraesCS7D01G231100 | chr7A | 93.787 | 1352 | 63 | 10 | 3406 | 4751 | 201543933 | 201542597 | 0.000000e+00 | 2012.0 |
9 | TraesCS7D01G231100 | chr7A | 90.530 | 264 | 21 | 4 | 3093 | 3355 | 201544192 | 201543932 | 3.600000e-91 | 346.0 |
10 | TraesCS7D01G231100 | chr7A | 84.211 | 361 | 38 | 9 | 2205 | 2563 | 201544528 | 201544185 | 2.800000e-87 | 333.0 |
11 | TraesCS7D01G231100 | chr7A | 98.113 | 53 | 1 | 0 | 2152 | 2204 | 573671304 | 573671356 | 5.180000e-15 | 93.5 |
12 | TraesCS7D01G231100 | chr7A | 92.727 | 55 | 4 | 0 | 2153 | 2207 | 501075758 | 501075704 | 4.030000e-11 | 80.5 |
13 | TraesCS7D01G231100 | chr5D | 95.817 | 502 | 19 | 2 | 2596 | 3097 | 496320035 | 496320534 | 0.000000e+00 | 809.0 |
14 | TraesCS7D01G231100 | chr5D | 92.157 | 51 | 4 | 0 | 2153 | 2203 | 55544553 | 55544503 | 6.740000e-09 | 73.1 |
15 | TraesCS7D01G231100 | chr1B | 94.389 | 499 | 27 | 1 | 2596 | 3094 | 567473563 | 567474060 | 0.000000e+00 | 765.0 |
16 | TraesCS7D01G231100 | chr1B | 93.988 | 499 | 29 | 1 | 2596 | 3094 | 251856274 | 251856771 | 0.000000e+00 | 754.0 |
17 | TraesCS7D01G231100 | chr1B | 93.241 | 503 | 31 | 3 | 2596 | 3097 | 39386366 | 39386866 | 0.000000e+00 | 737.0 |
18 | TraesCS7D01G231100 | chr1B | 92.727 | 55 | 4 | 0 | 2153 | 2207 | 415223912 | 415223858 | 4.030000e-11 | 80.5 |
19 | TraesCS7D01G231100 | chr1A | 93.587 | 499 | 31 | 1 | 2596 | 3094 | 381813271 | 381813768 | 0.000000e+00 | 743.0 |
20 | TraesCS7D01G231100 | chr1A | 97.222 | 36 | 1 | 0 | 2164 | 2199 | 485004532 | 485004497 | 1.460000e-05 | 62.1 |
21 | TraesCS7D01G231100 | chr5A | 93.387 | 499 | 32 | 1 | 2596 | 3094 | 43492004 | 43492501 | 0.000000e+00 | 737.0 |
22 | TraesCS7D01G231100 | chr3D | 93.587 | 499 | 23 | 5 | 2596 | 3093 | 435695193 | 435695683 | 0.000000e+00 | 736.0 |
23 | TraesCS7D01G231100 | chr3D | 92.857 | 56 | 3 | 1 | 2153 | 2208 | 528814621 | 528814567 | 4.030000e-11 | 80.5 |
24 | TraesCS7D01G231100 | chr2B | 92.857 | 504 | 35 | 1 | 2596 | 3099 | 408442983 | 408442481 | 0.000000e+00 | 730.0 |
25 | TraesCS7D01G231100 | chr1D | 96.154 | 52 | 2 | 0 | 2153 | 2204 | 96067121 | 96067172 | 8.660000e-13 | 86.1 |
26 | TraesCS7D01G231100 | chr1D | 92.000 | 50 | 3 | 1 | 2156 | 2204 | 439346865 | 439346816 | 8.720000e-08 | 69.4 |
27 | TraesCS7D01G231100 | chr1D | 95.000 | 40 | 2 | 0 | 2163 | 2202 | 458139910 | 458139871 | 4.060000e-06 | 63.9 |
28 | TraesCS7D01G231100 | chr4B | 90.476 | 63 | 5 | 1 | 2153 | 2214 | 212494747 | 212494809 | 1.120000e-11 | 82.4 |
29 | TraesCS7D01G231100 | chr6D | 94.231 | 52 | 3 | 0 | 2153 | 2204 | 28282881 | 28282830 | 4.030000e-11 | 80.5 |
30 | TraesCS7D01G231100 | chr6D | 94.231 | 52 | 3 | 0 | 2153 | 2204 | 348280412 | 348280463 | 4.030000e-11 | 80.5 |
31 | TraesCS7D01G231100 | chr6D | 92.157 | 51 | 4 | 0 | 2153 | 2203 | 20026525 | 20026575 | 6.740000e-09 | 73.1 |
32 | TraesCS7D01G231100 | chr6D | 92.308 | 39 | 3 | 0 | 2163 | 2201 | 211444642 | 211444680 | 6.790000e-04 | 56.5 |
33 | TraesCS7D01G231100 | chr4D | 94.231 | 52 | 3 | 0 | 2153 | 2204 | 65536238 | 65536289 | 4.030000e-11 | 80.5 |
34 | TraesCS7D01G231100 | chr6A | 91.379 | 58 | 4 | 1 | 2153 | 2209 | 115340000 | 115340057 | 1.450000e-10 | 78.7 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G231100 | chr7D | 192157919 | 192162776 | 4857 | True | 8972.000000 | 8972 | 100.000000 | 1 | 4858 | 1 | chr7D.!!$R2 | 4857 |
1 | TraesCS7D01G231100 | chr7B | 337639091 | 337643291 | 4200 | True | 2224.333333 | 3103 | 94.867333 | 42 | 4858 | 3 | chr7B.!!$R2 | 4816 |
2 | TraesCS7D01G231100 | chr7A | 201542597 | 201547814 | 5217 | True | 1418.500000 | 2983 | 90.224500 | 42 | 4751 | 4 | chr7A.!!$R2 | 4709 |
3 | TraesCS7D01G231100 | chr1B | 39386366 | 39386866 | 500 | False | 737.000000 | 737 | 93.241000 | 2596 | 3097 | 1 | chr1B.!!$F1 | 501 |
4 | TraesCS7D01G231100 | chr2B | 408442481 | 408442983 | 502 | True | 730.000000 | 730 | 92.857000 | 2596 | 3099 | 1 | chr2B.!!$R1 | 503 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
397 | 409 | 0.824109 | TTACTCATCCTGGCGAGTGG | 59.176 | 55.000 | 21.77 | 0.74 | 42.38 | 4.00 | F |
398 | 410 | 1.676678 | TACTCATCCTGGCGAGTGGC | 61.677 | 60.000 | 21.77 | 0.00 | 42.38 | 5.01 | F |
1287 | 1302 | 3.883489 | GGAATACACATGCCCCTTTAGTC | 59.117 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 | F |
2729 | 3881 | 0.179103 | GTACCCGTACCCGTTGGATG | 60.179 | 60.000 | 0.00 | 0.00 | 34.81 | 3.51 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1801 | 1817 | 1.026718 | ATTAGCTCCAACGCAGGTGC | 61.027 | 55.000 | 11.53 | 11.53 | 45.93 | 5.01 | R |
2349 | 3500 | 1.354368 | TCCCACATCCAAGTTTCTCCC | 59.646 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 | R |
2913 | 4065 | 0.250727 | TACCCTGCCTGCTTGTGAAC | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 | R |
4322 | 5477 | 0.403271 | AGATCAAAGCACCTGCCTGT | 59.597 | 50.000 | 0.00 | 0.00 | 43.38 | 4.00 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
31 | 32 | 3.827898 | CCCACCCTCGCTCGAGTC | 61.828 | 72.222 | 15.13 | 5.54 | 40.44 | 3.36 |
32 | 33 | 3.827898 | CCACCCTCGCTCGAGTCC | 61.828 | 72.222 | 15.13 | 0.00 | 40.44 | 3.85 |
33 | 34 | 3.062466 | CACCCTCGCTCGAGTCCA | 61.062 | 66.667 | 15.13 | 0.00 | 40.44 | 4.02 |
34 | 35 | 2.282958 | ACCCTCGCTCGAGTCCAA | 60.283 | 61.111 | 15.13 | 0.00 | 40.44 | 3.53 |
35 | 36 | 2.182030 | CCCTCGCTCGAGTCCAAC | 59.818 | 66.667 | 15.13 | 0.00 | 40.44 | 3.77 |
36 | 37 | 2.182030 | CCTCGCTCGAGTCCAACC | 59.818 | 66.667 | 15.13 | 0.00 | 40.44 | 3.77 |
37 | 38 | 2.182030 | CTCGCTCGAGTCCAACCC | 59.818 | 66.667 | 15.13 | 0.00 | 37.47 | 4.11 |
38 | 39 | 3.358076 | CTCGCTCGAGTCCAACCCC | 62.358 | 68.421 | 15.13 | 0.00 | 37.47 | 4.95 |
39 | 40 | 4.452733 | CGCTCGAGTCCAACCCCC | 62.453 | 72.222 | 15.13 | 0.00 | 0.00 | 5.40 |
40 | 41 | 3.319198 | GCTCGAGTCCAACCCCCA | 61.319 | 66.667 | 15.13 | 0.00 | 0.00 | 4.96 |
105 | 106 | 5.372373 | CCATCTCCAACCTAATCTTTCTCC | 58.628 | 45.833 | 0.00 | 0.00 | 0.00 | 3.71 |
111 | 112 | 4.116238 | CAACCTAATCTTTCTCCTCTCGC | 58.884 | 47.826 | 0.00 | 0.00 | 0.00 | 5.03 |
196 | 198 | 3.956199 | TCCCAATCTCATCCATTTCTTGC | 59.044 | 43.478 | 0.00 | 0.00 | 0.00 | 4.01 |
252 | 256 | 2.027625 | GAACCCTCACTCCGTTGCG | 61.028 | 63.158 | 0.00 | 0.00 | 0.00 | 4.85 |
290 | 295 | 2.266554 | GTCTGGCTCTCGTTCTTGATG | 58.733 | 52.381 | 0.00 | 0.00 | 0.00 | 3.07 |
293 | 298 | 1.895798 | TGGCTCTCGTTCTTGATGACT | 59.104 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
311 | 316 | 1.740025 | ACTGCTCCTAAAAGAATGCGC | 59.260 | 47.619 | 0.00 | 0.00 | 0.00 | 6.09 |
330 | 335 | 3.431572 | GCGCTCATCTGATTCTGATAACC | 59.568 | 47.826 | 0.00 | 0.00 | 0.00 | 2.85 |
331 | 336 | 4.625028 | CGCTCATCTGATTCTGATAACCA | 58.375 | 43.478 | 5.81 | 0.00 | 0.00 | 3.67 |
392 | 404 | 5.527214 | TGTTGATTAATTACTCATCCTGGCG | 59.473 | 40.000 | 6.37 | 0.00 | 0.00 | 5.69 |
393 | 405 | 5.545063 | TGATTAATTACTCATCCTGGCGA | 57.455 | 39.130 | 1.60 | 0.00 | 0.00 | 5.54 |
394 | 406 | 5.541845 | TGATTAATTACTCATCCTGGCGAG | 58.458 | 41.667 | 10.38 | 10.38 | 35.30 | 5.03 |
395 | 407 | 5.070446 | TGATTAATTACTCATCCTGGCGAGT | 59.930 | 40.000 | 18.59 | 18.59 | 44.51 | 4.18 |
396 | 408 | 2.898729 | ATTACTCATCCTGGCGAGTG | 57.101 | 50.000 | 21.77 | 5.65 | 42.38 | 3.51 |
397 | 409 | 0.824109 | TTACTCATCCTGGCGAGTGG | 59.176 | 55.000 | 21.77 | 0.74 | 42.38 | 4.00 |
398 | 410 | 1.676678 | TACTCATCCTGGCGAGTGGC | 61.677 | 60.000 | 21.77 | 0.00 | 42.38 | 5.01 |
484 | 496 | 5.674525 | TGGAGCTGGTCAGAATAAACTATG | 58.325 | 41.667 | 9.30 | 0.00 | 0.00 | 2.23 |
663 | 675 | 7.806690 | TGTGAGTTTTGATAGCTTGATGTTAC | 58.193 | 34.615 | 0.00 | 0.00 | 0.00 | 2.50 |
665 | 677 | 8.454106 | GTGAGTTTTGATAGCTTGATGTTACAT | 58.546 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
666 | 678 | 9.013229 | TGAGTTTTGATAGCTTGATGTTACATT | 57.987 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
733 | 746 | 4.030753 | GCTCTCGAGTAATTGTCGACAAAG | 59.969 | 45.833 | 32.69 | 22.81 | 41.41 | 2.77 |
1223 | 1236 | 7.425224 | AATATACTCTGCTAATAATCGGCCT | 57.575 | 36.000 | 0.00 | 0.00 | 0.00 | 5.19 |
1287 | 1302 | 3.883489 | GGAATACACATGCCCCTTTAGTC | 59.117 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
1320 | 1336 | 6.060788 | ACAATTCTTTTGCTTAAATTGGCCA | 58.939 | 32.000 | 0.00 | 0.00 | 41.29 | 5.36 |
1496 | 1512 | 9.917129 | CATGCTTCATATTCTAAATATTTGGCA | 57.083 | 29.630 | 11.05 | 0.00 | 0.00 | 4.92 |
1535 | 1551 | 9.302345 | CGTGATAGACAGTGTTCTTAATATTGT | 57.698 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
1801 | 1817 | 8.970859 | ACAAATATGTATTTCCCTCTTCAGAG | 57.029 | 34.615 | 0.00 | 0.00 | 38.24 | 3.35 |
1892 | 1908 | 7.071069 | TCTTACTCCATGCATGATGTATTCT | 57.929 | 36.000 | 28.31 | 6.28 | 0.00 | 2.40 |
1993 | 2010 | 7.787725 | AAATATATTCTTTGTGTCTCGGGTC | 57.212 | 36.000 | 0.00 | 0.00 | 0.00 | 4.46 |
2349 | 3500 | 4.104776 | AGAAAAACACACACGATTGCTTG | 58.895 | 39.130 | 0.00 | 0.00 | 0.00 | 4.01 |
2380 | 3531 | 1.616994 | GGATGTGGGAAAGGGTTCAGG | 60.617 | 57.143 | 0.00 | 0.00 | 35.25 | 3.86 |
2411 | 3562 | 9.989869 | GGAATTTTAGTGAAGCTAAATGTCTAC | 57.010 | 33.333 | 0.00 | 0.00 | 45.77 | 2.59 |
2423 | 3574 | 5.514204 | GCTAAATGTCTACGTCGTGTGTAAT | 59.486 | 40.000 | 8.47 | 0.00 | 0.00 | 1.89 |
2494 | 3645 | 7.710907 | TCGCTTAGTGTAGCAATCATTTCTTAT | 59.289 | 33.333 | 0.00 | 0.00 | 41.28 | 1.73 |
2558 | 3710 | 9.860898 | ATGCCTTTATCAAATTTTCTTACACTC | 57.139 | 29.630 | 0.00 | 0.00 | 0.00 | 3.51 |
2559 | 3711 | 8.303876 | TGCCTTTATCAAATTTTCTTACACTCC | 58.696 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
2560 | 3712 | 8.523658 | GCCTTTATCAAATTTTCTTACACTCCT | 58.476 | 33.333 | 0.00 | 0.00 | 0.00 | 3.69 |
2561 | 3713 | 9.846248 | CCTTTATCAAATTTTCTTACACTCCTG | 57.154 | 33.333 | 0.00 | 0.00 | 0.00 | 3.86 |
2566 | 3718 | 8.740123 | TCAAATTTTCTTACACTCCTGTTACA | 57.260 | 30.769 | 0.00 | 0.00 | 0.00 | 2.41 |
2567 | 3719 | 8.836413 | TCAAATTTTCTTACACTCCTGTTACAG | 58.164 | 33.333 | 5.22 | 5.22 | 0.00 | 2.74 |
2568 | 3720 | 8.836413 | CAAATTTTCTTACACTCCTGTTACAGA | 58.164 | 33.333 | 14.66 | 0.00 | 32.44 | 3.41 |
2569 | 3721 | 8.974060 | AATTTTCTTACACTCCTGTTACAGAA | 57.026 | 30.769 | 14.66 | 0.00 | 32.44 | 3.02 |
2570 | 3722 | 8.608844 | ATTTTCTTACACTCCTGTTACAGAAG | 57.391 | 34.615 | 14.66 | 5.32 | 32.44 | 2.85 |
2571 | 3723 | 6.726490 | TTCTTACACTCCTGTTACAGAAGT | 57.274 | 37.500 | 14.66 | 6.11 | 32.44 | 3.01 |
2572 | 3724 | 7.828508 | TTCTTACACTCCTGTTACAGAAGTA | 57.171 | 36.000 | 14.66 | 7.80 | 32.44 | 2.24 |
2573 | 3725 | 8.418597 | TTCTTACACTCCTGTTACAGAAGTAT | 57.581 | 34.615 | 14.66 | 0.00 | 32.44 | 2.12 |
2574 | 3726 | 9.524496 | TTCTTACACTCCTGTTACAGAAGTATA | 57.476 | 33.333 | 14.66 | 0.00 | 32.44 | 1.47 |
2575 | 3727 | 9.175312 | TCTTACACTCCTGTTACAGAAGTATAG | 57.825 | 37.037 | 14.66 | 7.18 | 32.44 | 1.31 |
2576 | 3728 | 8.874744 | TTACACTCCTGTTACAGAAGTATAGT | 57.125 | 34.615 | 14.66 | 6.21 | 32.44 | 2.12 |
2577 | 3729 | 9.964354 | TTACACTCCTGTTACAGAAGTATAGTA | 57.036 | 33.333 | 14.66 | 5.22 | 32.44 | 1.82 |
2578 | 3730 | 8.874744 | ACACTCCTGTTACAGAAGTATAGTAA | 57.125 | 34.615 | 14.66 | 0.00 | 32.44 | 2.24 |
2579 | 3731 | 9.476928 | ACACTCCTGTTACAGAAGTATAGTAAT | 57.523 | 33.333 | 14.66 | 0.00 | 32.44 | 1.89 |
2583 | 3735 | 9.925545 | TCCTGTTACAGAAGTATAGTAATACCA | 57.074 | 33.333 | 14.66 | 0.00 | 35.05 | 3.25 |
2590 | 3742 | 9.839185 | ACAGAAGTATAGTAATACCATACCCAT | 57.161 | 33.333 | 5.58 | 0.00 | 39.08 | 4.00 |
2594 | 3746 | 9.498039 | AAGTATAGTAATACCATACCCATACCC | 57.502 | 37.037 | 5.58 | 0.00 | 39.08 | 3.69 |
2595 | 3747 | 7.781693 | AGTATAGTAATACCATACCCATACCCG | 59.218 | 40.741 | 5.58 | 0.00 | 39.08 | 5.28 |
2596 | 3748 | 4.755437 | AGTAATACCATACCCATACCCGT | 58.245 | 43.478 | 0.00 | 0.00 | 0.00 | 5.28 |
2597 | 3749 | 5.902760 | AGTAATACCATACCCATACCCGTA | 58.097 | 41.667 | 0.00 | 0.00 | 0.00 | 4.02 |
2598 | 3750 | 6.505754 | AGTAATACCATACCCATACCCGTAT | 58.494 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2599 | 3751 | 5.687166 | AATACCATACCCATACCCGTATG | 57.313 | 43.478 | 7.72 | 7.72 | 40.92 | 2.39 |
2667 | 3819 | 5.757988 | GGTACAAAATTCTACCCATACCCA | 58.242 | 41.667 | 0.00 | 0.00 | 0.00 | 4.51 |
2729 | 3881 | 0.179103 | GTACCCGTACCCGTTGGATG | 60.179 | 60.000 | 0.00 | 0.00 | 34.81 | 3.51 |
2747 | 3899 | 0.402504 | TGCCCAACGGGTAGAACAAT | 59.597 | 50.000 | 0.06 | 0.00 | 46.51 | 2.71 |
2756 | 3908 | 3.244284 | ACGGGTAGAACAATTAGCACACA | 60.244 | 43.478 | 0.00 | 0.00 | 0.00 | 3.72 |
2789 | 3941 | 9.891828 | TCACATTTTTACACTCATTGATAACAC | 57.108 | 29.630 | 0.00 | 0.00 | 0.00 | 3.32 |
2840 | 3992 | 8.812329 | GCTCAATAACAAGTAGATGAGTACAAG | 58.188 | 37.037 | 0.00 | 0.00 | 34.39 | 3.16 |
2859 | 4011 | 8.470805 | AGTACAAGATACTCATAAGTCAACAGG | 58.529 | 37.037 | 0.00 | 0.00 | 36.92 | 4.00 |
2923 | 4075 | 7.066404 | TGACAACTTAACATTAGTTCACAAGCA | 59.934 | 33.333 | 0.00 | 0.00 | 39.15 | 3.91 |
2962 | 4114 | 4.950205 | CCCGTGGGTACAAGATTATACT | 57.050 | 45.455 | 0.00 | 0.00 | 0.00 | 2.12 |
2977 | 4129 | 6.559429 | AGATTATACTCGTACCCTACCCATT | 58.441 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3004 | 4156 | 2.158460 | ACGGGTAGGGTATGGGTACTAC | 60.158 | 54.545 | 0.00 | 0.00 | 36.07 | 2.73 |
3033 | 4185 | 2.116827 | TAAAAGTGTGCCCATACCCG | 57.883 | 50.000 | 0.00 | 0.00 | 0.00 | 5.28 |
3158 | 4311 | 7.179966 | TGTTCCACTACTAGGACTTCTTGATA | 58.820 | 38.462 | 0.00 | 0.00 | 34.19 | 2.15 |
3245 | 4398 | 4.900635 | AATCACTTGGTTGTGTGAGTTC | 57.099 | 40.909 | 0.00 | 0.00 | 44.85 | 3.01 |
3403 | 4558 | 7.275341 | GTGCTCCTATCTCATATTTGATCGAAG | 59.725 | 40.741 | 1.10 | 0.00 | 0.00 | 3.79 |
3592 | 4747 | 0.683504 | ATCGCGACCCACCTCTTACT | 60.684 | 55.000 | 12.93 | 0.00 | 0.00 | 2.24 |
3624 | 4779 | 3.894759 | AGTAATCTGTAGCCTGTCGGTA | 58.105 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
3735 | 4890 | 1.541620 | AAGTTCAGACCCCTCCCCC | 60.542 | 63.158 | 0.00 | 0.00 | 0.00 | 5.40 |
3893 | 5048 | 6.292061 | GCTAAAGATCAGCACTACGATGAAAG | 60.292 | 42.308 | 0.00 | 0.00 | 38.93 | 2.62 |
3920 | 5075 | 3.133464 | ACGGAATGCGTGCATGGG | 61.133 | 61.111 | 8.30 | 3.56 | 36.68 | 4.00 |
4060 | 5215 | 4.200092 | GGAAGGACAGGCTAAATCGATTT | 58.800 | 43.478 | 25.48 | 25.48 | 0.00 | 2.17 |
4211 | 5366 | 6.207417 | ACATAATAGGAAATGCTACACATGCC | 59.793 | 38.462 | 0.00 | 0.00 | 39.60 | 4.40 |
4265 | 5420 | 4.142491 | CGCAGGATGGCAAATGTTTAGTTA | 60.142 | 41.667 | 0.00 | 0.00 | 35.86 | 2.24 |
4267 | 5422 | 6.340522 | GCAGGATGGCAAATGTTTAGTTAAT | 58.659 | 36.000 | 0.00 | 0.00 | 35.86 | 1.40 |
4268 | 5423 | 7.488322 | GCAGGATGGCAAATGTTTAGTTAATA | 58.512 | 34.615 | 0.00 | 0.00 | 35.86 | 0.98 |
4269 | 5424 | 7.435192 | GCAGGATGGCAAATGTTTAGTTAATAC | 59.565 | 37.037 | 0.00 | 0.00 | 35.86 | 1.89 |
4270 | 5425 | 8.686334 | CAGGATGGCAAATGTTTAGTTAATACT | 58.314 | 33.333 | 0.00 | 0.00 | 38.44 | 2.12 |
4271 | 5426 | 8.903820 | AGGATGGCAAATGTTTAGTTAATACTC | 58.096 | 33.333 | 0.00 | 0.00 | 35.78 | 2.59 |
4272 | 5427 | 8.135529 | GGATGGCAAATGTTTAGTTAATACTCC | 58.864 | 37.037 | 0.00 | 0.00 | 35.78 | 3.85 |
4273 | 5428 | 7.079182 | TGGCAAATGTTTAGTTAATACTCCG | 57.921 | 36.000 | 0.00 | 0.00 | 35.78 | 4.63 |
4357 | 5512 | 0.815734 | ATCTGCATTCTGCTGTTGCC | 59.184 | 50.000 | 14.84 | 3.08 | 45.31 | 4.52 |
4419 | 5574 | 2.517959 | CATGGCCCTGAAAGAAGTTCA | 58.482 | 47.619 | 0.97 | 0.00 | 44.20 | 3.18 |
4422 | 5577 | 2.108075 | TGGCCCTGAAAGAAGTTCATCA | 59.892 | 45.455 | 0.00 | 8.25 | 45.27 | 3.07 |
4435 | 5590 | 9.741647 | AAAGAAGTTCATCACATCTTTCTTTTC | 57.258 | 29.630 | 5.50 | 0.00 | 46.00 | 2.29 |
4588 | 5745 | 2.287608 | GGAACTGGAAGAAAACCAAGCG | 60.288 | 50.000 | 0.00 | 0.00 | 36.95 | 4.68 |
4610 | 5767 | 5.390991 | GCGTTCTCTTTCCCTTCAATAGTTG | 60.391 | 44.000 | 0.00 | 0.00 | 0.00 | 3.16 |
4619 | 5776 | 4.518970 | TCCCTTCAATAGTTGTGCAGTTTC | 59.481 | 41.667 | 0.00 | 0.00 | 0.00 | 2.78 |
4637 | 5794 | 4.037923 | AGTTTCGTTGATGCAGGTGAAAAT | 59.962 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
4809 | 5984 | 5.321102 | ACACTGATTATGCCACAGGTTTAA | 58.679 | 37.500 | 0.00 | 0.00 | 36.17 | 1.52 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
14 | 15 | 3.827898 | GACTCGAGCGAGGGTGGG | 61.828 | 72.222 | 22.11 | 0.00 | 45.88 | 4.61 |
15 | 16 | 3.827898 | GGACTCGAGCGAGGGTGG | 61.828 | 72.222 | 22.11 | 0.06 | 45.88 | 4.61 |
16 | 17 | 2.636412 | TTGGACTCGAGCGAGGGTG | 61.636 | 63.158 | 22.11 | 0.42 | 45.88 | 4.61 |
17 | 18 | 2.282958 | TTGGACTCGAGCGAGGGT | 60.283 | 61.111 | 22.11 | 4.76 | 45.88 | 4.34 |
18 | 19 | 2.182030 | GTTGGACTCGAGCGAGGG | 59.818 | 66.667 | 22.11 | 1.48 | 45.88 | 4.30 |
19 | 20 | 2.182030 | GGTTGGACTCGAGCGAGG | 59.818 | 66.667 | 22.11 | 6.37 | 45.88 | 4.63 |
20 | 21 | 2.182030 | GGGTTGGACTCGAGCGAG | 59.818 | 66.667 | 13.61 | 17.46 | 46.91 | 5.03 |
21 | 22 | 3.379445 | GGGGTTGGACTCGAGCGA | 61.379 | 66.667 | 13.61 | 0.00 | 0.00 | 4.93 |
22 | 23 | 4.452733 | GGGGGTTGGACTCGAGCG | 62.453 | 72.222 | 13.61 | 0.00 | 0.00 | 5.03 |
23 | 24 | 3.316573 | CTGGGGGTTGGACTCGAGC | 62.317 | 68.421 | 13.61 | 5.26 | 0.00 | 5.03 |
24 | 25 | 2.982130 | CTGGGGGTTGGACTCGAG | 59.018 | 66.667 | 11.84 | 11.84 | 0.00 | 4.04 |
25 | 26 | 3.319198 | GCTGGGGGTTGGACTCGA | 61.319 | 66.667 | 0.00 | 0.00 | 0.00 | 4.04 |
26 | 27 | 3.612247 | CTGCTGGGGGTTGGACTCG | 62.612 | 68.421 | 0.00 | 0.00 | 0.00 | 4.18 |
27 | 28 | 2.352805 | CTGCTGGGGGTTGGACTC | 59.647 | 66.667 | 0.00 | 0.00 | 0.00 | 3.36 |
28 | 29 | 3.971702 | GCTGCTGGGGGTTGGACT | 61.972 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
31 | 32 | 4.748144 | GAGGCTGCTGGGGGTTGG | 62.748 | 72.222 | 0.00 | 0.00 | 0.00 | 3.77 |
32 | 33 | 4.748144 | GGAGGCTGCTGGGGGTTG | 62.748 | 72.222 | 0.00 | 0.00 | 0.00 | 3.77 |
35 | 36 | 4.120755 | GAAGGAGGCTGCTGGGGG | 62.121 | 72.222 | 10.05 | 0.00 | 0.00 | 5.40 |
36 | 37 | 4.120755 | GGAAGGAGGCTGCTGGGG | 62.121 | 72.222 | 10.05 | 0.00 | 0.00 | 4.96 |
37 | 38 | 3.013932 | AGGAAGGAGGCTGCTGGG | 61.014 | 66.667 | 10.05 | 0.00 | 0.00 | 4.45 |
38 | 39 | 0.689080 | TAGAGGAAGGAGGCTGCTGG | 60.689 | 60.000 | 10.05 | 0.00 | 0.00 | 4.85 |
39 | 40 | 0.752054 | CTAGAGGAAGGAGGCTGCTG | 59.248 | 60.000 | 10.05 | 0.00 | 0.00 | 4.41 |
40 | 41 | 0.338120 | ACTAGAGGAAGGAGGCTGCT | 59.662 | 55.000 | 1.28 | 1.28 | 0.00 | 4.24 |
252 | 256 | 4.878397 | CCAGACACCAAAATCCATCTCTAC | 59.122 | 45.833 | 0.00 | 0.00 | 0.00 | 2.59 |
290 | 295 | 2.223135 | GCGCATTCTTTTAGGAGCAGTC | 60.223 | 50.000 | 0.30 | 0.00 | 0.00 | 3.51 |
293 | 298 | 2.009774 | GAGCGCATTCTTTTAGGAGCA | 58.990 | 47.619 | 11.47 | 0.00 | 0.00 | 4.26 |
311 | 316 | 6.580788 | ACTGTGGTTATCAGAATCAGATGAG | 58.419 | 40.000 | 0.00 | 0.00 | 36.81 | 2.90 |
397 | 409 | 0.750850 | TACAGATTAGGGGCAGTCGC | 59.249 | 55.000 | 0.00 | 0.00 | 37.44 | 5.19 |
398 | 410 | 1.068741 | GGTACAGATTAGGGGCAGTCG | 59.931 | 57.143 | 0.00 | 0.00 | 0.00 | 4.18 |
695 | 707 | 0.947244 | AGAGCAGAACCAAAACGCTG | 59.053 | 50.000 | 0.00 | 0.00 | 31.86 | 5.18 |
699 | 711 | 2.484889 | ACTCGAGAGCAGAACCAAAAC | 58.515 | 47.619 | 21.68 | 0.00 | 0.00 | 2.43 |
733 | 746 | 6.931840 | AGAAGTTCAGAACCAAGAGAATACAC | 59.068 | 38.462 | 9.85 | 0.00 | 0.00 | 2.90 |
986 | 999 | 2.607750 | ACATGGAGCCCCGACAGT | 60.608 | 61.111 | 0.00 | 0.00 | 34.29 | 3.55 |
1223 | 1236 | 5.719085 | ACAGACATTGGCCAAATATTACCAA | 59.281 | 36.000 | 24.71 | 15.84 | 45.68 | 3.67 |
1287 | 1302 | 2.580589 | CAAAAGAATTGTACCACGGCG | 58.419 | 47.619 | 4.80 | 4.80 | 0.00 | 6.46 |
1320 | 1336 | 5.728637 | AAGAATTTTCTTGCTCGGGATTT | 57.271 | 34.783 | 4.80 | 0.00 | 45.27 | 2.17 |
1442 | 1458 | 7.201617 | GCTTTTGCATCCCTATTACGGATATAC | 60.202 | 40.741 | 0.00 | 0.00 | 46.58 | 1.47 |
1509 | 1525 | 9.302345 | ACAATATTAAGAACACTGTCTATCACG | 57.698 | 33.333 | 0.00 | 0.00 | 0.00 | 4.35 |
1535 | 1551 | 7.223584 | TGTCTCTCACTCCACAATATTTTTGA | 58.776 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
1542 | 1558 | 5.080337 | AGAACTGTCTCTCACTCCACAATA | 58.920 | 41.667 | 0.00 | 0.00 | 0.00 | 1.90 |
1630 | 1646 | 5.009911 | CACAGGACACCAAATCATTGAGAAA | 59.990 | 40.000 | 0.00 | 0.00 | 38.94 | 2.52 |
1801 | 1817 | 1.026718 | ATTAGCTCCAACGCAGGTGC | 61.027 | 55.000 | 11.53 | 11.53 | 45.93 | 5.01 |
1925 | 1942 | 5.590663 | TGATGACCTCAGACAGATACAGTAC | 59.409 | 44.000 | 0.00 | 0.00 | 0.00 | 2.73 |
1988 | 2005 | 3.670627 | GCAATGCAGAAAGTAAAGACCCG | 60.671 | 47.826 | 0.00 | 0.00 | 0.00 | 5.28 |
1993 | 2010 | 6.672147 | ACTTACAGCAATGCAGAAAGTAAAG | 58.328 | 36.000 | 8.35 | 2.26 | 29.11 | 1.85 |
2328 | 3479 | 3.242712 | CCAAGCAATCGTGTGTGTTTTTC | 59.757 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
2349 | 3500 | 1.354368 | TCCCACATCCAAGTTTCTCCC | 59.646 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
2411 | 3562 | 2.219903 | TGCAGAACAATTACACACGACG | 59.780 | 45.455 | 0.00 | 0.00 | 0.00 | 5.12 |
2423 | 3574 | 3.554934 | AGAAACTGTCCATGCAGAACAA | 58.445 | 40.909 | 7.27 | 0.00 | 39.62 | 2.83 |
2494 | 3645 | 5.290493 | AGTGTTCAGAAGTTATGTGACCA | 57.710 | 39.130 | 0.00 | 0.00 | 29.71 | 4.02 |
2557 | 3709 | 9.925545 | TGGTATTACTATACTTCTGTAACAGGA | 57.074 | 33.333 | 0.00 | 0.00 | 37.39 | 3.86 |
2564 | 3716 | 9.839185 | ATGGGTATGGTATTACTATACTTCTGT | 57.161 | 33.333 | 22.18 | 10.62 | 40.86 | 3.41 |
2568 | 3720 | 9.498039 | GGGTATGGGTATGGTATTACTATACTT | 57.502 | 37.037 | 22.18 | 13.74 | 40.86 | 2.24 |
2569 | 3721 | 7.781693 | CGGGTATGGGTATGGTATTACTATACT | 59.218 | 40.741 | 22.18 | 10.95 | 40.86 | 2.12 |
2570 | 3722 | 7.561356 | ACGGGTATGGGTATGGTATTACTATAC | 59.439 | 40.741 | 17.50 | 17.50 | 40.49 | 1.47 |
2571 | 3723 | 7.651607 | ACGGGTATGGGTATGGTATTACTATA | 58.348 | 38.462 | 0.00 | 0.00 | 0.00 | 1.31 |
2572 | 3724 | 6.505754 | ACGGGTATGGGTATGGTATTACTAT | 58.494 | 40.000 | 0.00 | 0.00 | 0.00 | 2.12 |
2573 | 3725 | 5.902760 | ACGGGTATGGGTATGGTATTACTA | 58.097 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
2574 | 3726 | 4.755437 | ACGGGTATGGGTATGGTATTACT | 58.245 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
2575 | 3727 | 6.576185 | CATACGGGTATGGGTATGGTATTAC | 58.424 | 44.000 | 10.32 | 0.00 | 41.31 | 1.89 |
2576 | 3728 | 6.795144 | CATACGGGTATGGGTATGGTATTA | 57.205 | 41.667 | 10.32 | 0.00 | 41.31 | 0.98 |
2577 | 3729 | 5.687166 | CATACGGGTATGGGTATGGTATT | 57.313 | 43.478 | 10.32 | 0.00 | 41.31 | 1.89 |
2588 | 3740 | 1.533625 | CCCATTGCCATACGGGTATG | 58.466 | 55.000 | 11.07 | 11.07 | 41.86 | 2.39 |
2592 | 3744 | 0.762418 | TCTACCCATTGCCATACGGG | 59.238 | 55.000 | 0.00 | 0.00 | 44.88 | 5.28 |
2593 | 3745 | 1.878102 | GCTCTACCCATTGCCATACGG | 60.878 | 57.143 | 0.00 | 0.00 | 0.00 | 4.02 |
2594 | 3746 | 1.202639 | TGCTCTACCCATTGCCATACG | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
2595 | 3747 | 2.638480 | TGCTCTACCCATTGCCATAC | 57.362 | 50.000 | 0.00 | 0.00 | 0.00 | 2.39 |
2596 | 3748 | 3.882102 | ATTGCTCTACCCATTGCCATA | 57.118 | 42.857 | 0.00 | 0.00 | 0.00 | 2.74 |
2597 | 3749 | 2.761786 | ATTGCTCTACCCATTGCCAT | 57.238 | 45.000 | 0.00 | 0.00 | 0.00 | 4.40 |
2598 | 3750 | 2.422803 | GGTATTGCTCTACCCATTGCCA | 60.423 | 50.000 | 4.46 | 0.00 | 36.00 | 4.92 |
2599 | 3751 | 2.230660 | GGTATTGCTCTACCCATTGCC | 58.769 | 52.381 | 4.46 | 0.00 | 36.00 | 4.52 |
2600 | 3752 | 2.930950 | TGGTATTGCTCTACCCATTGC | 58.069 | 47.619 | 11.32 | 0.00 | 40.47 | 3.56 |
2601 | 3753 | 5.003804 | GGTATGGTATTGCTCTACCCATTG | 58.996 | 45.833 | 11.32 | 0.00 | 40.47 | 2.82 |
2602 | 3754 | 5.242795 | GGTATGGTATTGCTCTACCCATT | 57.757 | 43.478 | 11.32 | 2.11 | 40.47 | 3.16 |
2603 | 3755 | 4.910458 | GGTATGGTATTGCTCTACCCAT | 57.090 | 45.455 | 11.32 | 6.74 | 40.47 | 4.00 |
2734 | 3886 | 3.244284 | TGTGTGCTAATTGTTCTACCCGT | 60.244 | 43.478 | 0.00 | 0.00 | 0.00 | 5.28 |
2747 | 3899 | 5.574891 | AATGTGAACAACTTGTGTGCTAA | 57.425 | 34.783 | 0.00 | 0.00 | 40.60 | 3.09 |
2756 | 3908 | 9.086336 | CAATGAGTGTAAAAATGTGAACAACTT | 57.914 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
2840 | 3992 | 8.453238 | TCTACTCCTGTTGACTTATGAGTATC | 57.547 | 38.462 | 0.00 | 0.00 | 35.47 | 2.24 |
2856 | 4008 | 7.496529 | TTTTCATGTGACTTTTCTACTCCTG | 57.503 | 36.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2913 | 4065 | 0.250727 | TACCCTGCCTGCTTGTGAAC | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2962 | 4114 | 4.338118 | CGTTAAGTAATGGGTAGGGTACGA | 59.662 | 45.833 | 0.00 | 0.00 | 0.00 | 3.43 |
2977 | 4129 | 3.052186 | ACCCATACCCTACCCGTTAAGTA | 60.052 | 47.826 | 0.00 | 0.00 | 0.00 | 2.24 |
3004 | 4156 | 2.693074 | GGCACACTTTTATACCCATGGG | 59.307 | 50.000 | 30.23 | 30.23 | 42.03 | 4.00 |
3158 | 4311 | 1.698506 | TTCCACACGCCCAAAGAAAT | 58.301 | 45.000 | 0.00 | 0.00 | 0.00 | 2.17 |
3245 | 4398 | 0.749091 | ATGTGGTGGGATCGTGCATG | 60.749 | 55.000 | 0.00 | 0.00 | 0.00 | 4.06 |
3316 | 4469 | 4.348168 | GGGAAGATGTTAGAGAAGCCCATA | 59.652 | 45.833 | 0.00 | 0.00 | 33.28 | 2.74 |
3317 | 4470 | 3.137360 | GGGAAGATGTTAGAGAAGCCCAT | 59.863 | 47.826 | 0.00 | 0.00 | 33.28 | 4.00 |
3337 | 4492 | 7.280652 | CAGCCATGATTTTTATTTTGGTAAGGG | 59.719 | 37.037 | 0.00 | 0.00 | 0.00 | 3.95 |
3385 | 4540 | 7.215789 | AGAGTTGCTTCGATCAAATATGAGAT | 58.784 | 34.615 | 2.70 | 0.00 | 39.39 | 2.75 |
3403 | 4558 | 5.407502 | AGTGTTTTTGTACCAAAGAGTTGC | 58.592 | 37.500 | 0.00 | 0.00 | 33.01 | 4.17 |
3592 | 4747 | 5.470368 | GCTACAGATTACTATTGGATGCGA | 58.530 | 41.667 | 0.00 | 0.00 | 0.00 | 5.10 |
3624 | 4779 | 8.153550 | GGATCAGACTAGTTGGATTTATCATGT | 58.846 | 37.037 | 10.46 | 0.00 | 0.00 | 3.21 |
3735 | 4890 | 1.880027 | GTACACAGTGCTTGGGAAAGG | 59.120 | 52.381 | 0.00 | 0.00 | 33.14 | 3.11 |
3920 | 5075 | 2.216898 | GGGATATCACAAGACAGCAGC | 58.783 | 52.381 | 4.83 | 0.00 | 0.00 | 5.25 |
4164 | 5319 | 2.066262 | ACACAATTCCGCTGTTACTCG | 58.934 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 |
4211 | 5366 | 3.743521 | TCAGGTGAACAGGAAATCAGTG | 58.256 | 45.455 | 0.00 | 0.00 | 0.00 | 3.66 |
4269 | 5424 | 8.815189 | CATGATATAGCAGAAAATGATACGGAG | 58.185 | 37.037 | 0.00 | 0.00 | 31.30 | 4.63 |
4270 | 5425 | 7.765819 | CCATGATATAGCAGAAAATGATACGGA | 59.234 | 37.037 | 0.00 | 0.00 | 31.30 | 4.69 |
4271 | 5426 | 7.550551 | ACCATGATATAGCAGAAAATGATACGG | 59.449 | 37.037 | 0.00 | 0.00 | 31.30 | 4.02 |
4272 | 5427 | 8.484641 | ACCATGATATAGCAGAAAATGATACG | 57.515 | 34.615 | 0.00 | 0.00 | 31.30 | 3.06 |
4273 | 5428 | 9.440773 | TGACCATGATATAGCAGAAAATGATAC | 57.559 | 33.333 | 0.00 | 0.00 | 31.30 | 2.24 |
4322 | 5477 | 0.403271 | AGATCAAAGCACCTGCCTGT | 59.597 | 50.000 | 0.00 | 0.00 | 43.38 | 4.00 |
4346 | 5501 | 2.974148 | CACAGCGGCAACAGCAGA | 60.974 | 61.111 | 1.45 | 0.00 | 38.34 | 4.26 |
4357 | 5512 | 3.584250 | CTGCGCCTGAAACACAGCG | 62.584 | 63.158 | 4.18 | 0.00 | 44.52 | 5.18 |
4419 | 5574 | 5.350914 | CAGCGAGAGAAAAGAAAGATGTGAT | 59.649 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
4422 | 5577 | 3.434984 | GCAGCGAGAGAAAAGAAAGATGT | 59.565 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
4528 | 5683 | 1.657751 | GCCGATGCAGGAAAACTCCC | 61.658 | 60.000 | 0.00 | 0.00 | 37.47 | 4.30 |
4588 | 5745 | 6.568653 | GCACAACTATTGAAGGGAAAGAGAAC | 60.569 | 42.308 | 0.00 | 0.00 | 0.00 | 3.01 |
4610 | 5767 | 1.664016 | CCTGCATCAACGAAACTGCAC | 60.664 | 52.381 | 0.00 | 0.00 | 39.54 | 4.57 |
4619 | 5776 | 5.046910 | ACTAATTTTCACCTGCATCAACG | 57.953 | 39.130 | 0.00 | 0.00 | 0.00 | 4.10 |
4727 | 5885 | 9.314133 | TGCTAGTATATATCCACTGTTTCAGAT | 57.686 | 33.333 | 3.70 | 0.00 | 35.18 | 2.90 |
4785 | 5950 | 4.568072 | AACCTGTGGCATAATCAGTGTA | 57.432 | 40.909 | 0.00 | 0.00 | 0.00 | 2.90 |
4789 | 5954 | 5.895636 | TGTTAAACCTGTGGCATAATCAG | 57.104 | 39.130 | 0.00 | 0.00 | 0.00 | 2.90 |
4790 | 5955 | 6.656632 | TTTGTTAAACCTGTGGCATAATCA | 57.343 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
4831 | 6006 | 5.778750 | AGCTTAGGACTCCTTGTGTACTAAA | 59.221 | 40.000 | 1.94 | 0.00 | 39.49 | 1.85 |
4833 | 6008 | 4.705507 | CAGCTTAGGACTCCTTGTGTACTA | 59.294 | 45.833 | 1.94 | 0.00 | 34.61 | 1.82 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.