Multiple sequence alignment - TraesCS7D01G230500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G230500 chr7D 100.000 5502 0 0 1 5502 191559555 191554054 0.000000e+00 10161.0
1 TraesCS7D01G230500 chr7D 91.480 223 19 0 1706 1928 191493348 191493126 1.930000e-79 307.0
2 TraesCS7D01G230500 chr7D 78.613 346 46 17 1273 1611 191493813 191493489 2.600000e-48 204.0
3 TraesCS7D01G230500 chr7A 92.792 2303 127 20 2598 4893 200062807 200060537 0.000000e+00 3297.0
4 TraesCS7D01G230500 chr7A 90.718 808 48 13 1170 1964 200065531 200064738 0.000000e+00 1051.0
5 TraesCS7D01G230500 chr7A 91.640 634 33 6 4889 5502 200042614 200041981 0.000000e+00 859.0
6 TraesCS7D01G230500 chr7A 88.644 317 25 7 831 1136 200065848 200065532 5.200000e-100 375.0
7 TraesCS7D01G230500 chr7A 91.928 223 18 0 1706 1928 200032715 200032493 4.140000e-81 313.0
8 TraesCS7D01G230500 chr7A 93.158 190 13 0 2021 2210 200064739 200064550 4.200000e-71 279.0
9 TraesCS7D01G230500 chr7A 76.943 386 66 17 1242 1611 200033277 200032899 1.210000e-46 198.0
10 TraesCS7D01G230500 chr7B 91.682 1599 121 10 3268 4861 336703792 336702201 0.000000e+00 2206.0
11 TraesCS7D01G230500 chr7B 94.660 824 32 8 1170 1987 336719138 336718321 0.000000e+00 1267.0
12 TraesCS7D01G230500 chr7B 89.142 571 40 7 4952 5502 336702189 336701621 0.000000e+00 691.0
13 TraesCS7D01G230500 chr7B 93.678 348 18 4 1 346 336720076 336719731 8.170000e-143 518.0
14 TraesCS7D01G230500 chr7B 88.060 402 26 12 747 1136 336719530 336719139 1.810000e-124 457.0
15 TraesCS7D01G230500 chr7B 87.368 380 37 8 2898 3272 336716322 336715949 5.090000e-115 425.0
16 TraesCS7D01G230500 chr7B 93.676 253 16 0 3 255 639679285 639679033 4.020000e-101 379.0
17 TraesCS7D01G230500 chr7B 93.909 197 12 0 1730 1926 336647507 336647311 1.160000e-76 298.0
18 TraesCS7D01G230500 chr7B 87.500 144 15 2 2214 2354 336717727 336717584 4.410000e-36 163.0
19 TraesCS7D01G230500 chr7B 83.851 161 20 1 1451 1611 336647848 336647694 1.230000e-31 148.0
20 TraesCS7D01G230500 chr7B 95.556 90 4 0 2004 2093 336718334 336718245 1.600000e-30 145.0
21 TraesCS7D01G230500 chr3B 92.420 343 24 2 3 345 250795063 250794723 6.410000e-134 488.0
22 TraesCS7D01G230500 chr3B 86.628 344 45 1 3 345 660332715 660332372 4.020000e-101 379.0
23 TraesCS7D01G230500 chr4B 89.320 309 32 1 3 310 286750320 286750628 2.400000e-103 387.0
24 TraesCS7D01G230500 chr6D 86.628 344 45 1 3 345 158871944 158872287 4.020000e-101 379.0
25 TraesCS7D01G230500 chr6D 88.688 221 21 4 1707 1925 362987940 362988158 3.270000e-67 267.0
26 TraesCS7D01G230500 chr6D 79.018 224 40 7 3648 3866 362988640 362988861 4.440000e-31 147.0
27 TraesCS7D01G230500 chr2B 85.465 344 49 1 3 345 322628172 322628515 1.880000e-94 357.0
28 TraesCS7D01G230500 chr1D 85.465 344 46 4 3 345 216023404 216023744 6.780000e-94 355.0
29 TraesCS7D01G230500 chr5A 84.638 345 51 2 3 345 592306360 592306704 5.280000e-90 342.0
30 TraesCS7D01G230500 chr5A 85.714 56 5 3 1546 1599 531083367 531083313 7.700000e-04 56.5
31 TraesCS7D01G230500 chr6A 88.940 217 20 4 1707 1921 503426201 503426415 1.180000e-66 265.0
32 TraesCS7D01G230500 chr6A 79.464 224 39 7 3648 3866 503426859 503427080 9.550000e-33 152.0
33 TraesCS7D01G230500 chr6B 87.783 221 23 4 1707 1925 544403588 544403806 7.070000e-64 255.0
34 TraesCS7D01G230500 chrUn 90.278 72 7 0 1778 1849 314646184 314646255 1.630000e-15 95.3
35 TraesCS7D01G230500 chr5B 96.875 32 0 1 1569 1599 504833445 504833414 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G230500 chr7D 191554054 191559555 5501 True 10161.000000 10161 100.0000 1 5502 1 chr7D.!!$R1 5501
1 TraesCS7D01G230500 chr7D 191493126 191493813 687 True 255.500000 307 85.0465 1273 1928 2 chr7D.!!$R2 655
2 TraesCS7D01G230500 chr7A 200060537 200065848 5311 True 1250.500000 3297 91.3280 831 4893 4 chr7A.!!$R3 4062
3 TraesCS7D01G230500 chr7A 200041981 200042614 633 True 859.000000 859 91.6400 4889 5502 1 chr7A.!!$R1 613
4 TraesCS7D01G230500 chr7A 200032493 200033277 784 True 255.500000 313 84.4355 1242 1928 2 chr7A.!!$R2 686
5 TraesCS7D01G230500 chr7B 336701621 336703792 2171 True 1448.500000 2206 90.4120 3268 5502 2 chr7B.!!$R3 2234
6 TraesCS7D01G230500 chr7B 336715949 336720076 4127 True 495.833333 1267 91.1370 1 3272 6 chr7B.!!$R4 3271
7 TraesCS7D01G230500 chr7B 336647311 336647848 537 True 223.000000 298 88.8800 1451 1926 2 chr7B.!!$R2 475
8 TraesCS7D01G230500 chr6D 362987940 362988861 921 False 207.000000 267 83.8530 1707 3866 2 chr6D.!!$F2 2159
9 TraesCS7D01G230500 chr6A 503426201 503427080 879 False 208.500000 265 84.2020 1707 3866 2 chr6A.!!$F1 2159

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
425 428 0.042188 CCATACTTGCATGCGTACGC 60.042 55.0 32.49 32.49 42.35 4.42 F
995 1182 0.175073 GACATTCCGCCGGAGTAGTT 59.825 55.0 5.05 0.00 31.21 2.24 F
1145 1338 0.234884 GGTACGTGCTGAACTGTTGC 59.765 55.0 3.01 0.00 0.00 4.17 F
2963 5940 0.105246 AATTGAACCTGGGTGGGCAA 60.105 50.0 0.00 0.00 41.11 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2006 2336 0.108377 ACATGCGTCACGGCTATCAA 60.108 50.0 0.00 0.0 0.00 2.57 R
2691 5113 0.104120 TTCGACTGGGAGTGTGTGTG 59.896 55.0 0.00 0.0 0.00 3.82 R
2993 5970 0.251341 GACAAGGCACTCCACCCAAT 60.251 55.0 0.00 0.0 38.49 3.16 R
4880 7870 0.883833 CTAGTGGTTTTGGCCAGCAG 59.116 55.0 5.11 0.0 39.53 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.122964 AGATGTTTTGTATCTTCTAAGCCCC 58.877 40.000 0.00 0.00 30.98 5.80
42 43 2.214376 CCCAGAACAAGTTGGGCATA 57.786 50.000 7.96 0.00 46.96 3.14
83 84 5.646577 ATCTATTAGCTAGCGTAACCCTG 57.353 43.478 9.55 0.00 0.00 4.45
99 100 1.024579 CCTGCACGGGATTGTACCAC 61.025 60.000 0.00 0.00 0.00 4.16
100 101 0.321210 CTGCACGGGATTGTACCACA 60.321 55.000 0.00 0.00 0.00 4.17
149 151 2.450609 TTGCCGGACAGTCTAGTTTC 57.549 50.000 5.05 0.00 0.00 2.78
155 157 4.443034 GCCGGACAGTCTAGTTTCCATATT 60.443 45.833 5.05 0.00 0.00 1.28
161 163 9.099454 GGACAGTCTAGTTTCCATATTTTACTG 57.901 37.037 0.00 0.00 37.29 2.74
194 196 2.269520 CTGTGATTCGCCCCATCCCA 62.270 60.000 0.00 0.00 0.00 4.37
235 237 3.814504 ACCAAACTGATGATCCCACTT 57.185 42.857 0.00 0.00 0.00 3.16
245 247 6.493115 ACTGATGATCCCACTTCATAGAGTAG 59.507 42.308 0.00 0.00 34.03 2.57
317 320 3.189080 GTCTTGCATATCATATTGCGGCA 59.811 43.478 0.00 0.00 41.80 5.69
318 321 3.437741 TCTTGCATATCATATTGCGGCAG 59.562 43.478 1.67 0.00 41.80 4.85
323 326 1.426251 ATCATATTGCGGCAGGGGGA 61.426 55.000 1.67 0.83 0.00 4.81
325 328 0.540365 CATATTGCGGCAGGGGGATT 60.540 55.000 1.67 0.00 0.00 3.01
334 337 2.034878 GGCAGGGGGATTGAAAGAATC 58.965 52.381 0.00 0.00 0.00 2.52
335 338 2.624029 GGCAGGGGGATTGAAAGAATCA 60.624 50.000 0.00 0.00 35.85 2.57
344 347 7.147672 GGGGGATTGAAAGAATCATTTGTACAT 60.148 37.037 0.00 0.00 38.03 2.29
345 348 7.707893 GGGGATTGAAAGAATCATTTGTACATG 59.292 37.037 0.00 0.00 38.03 3.21
346 349 7.707893 GGGATTGAAAGAATCATTTGTACATGG 59.292 37.037 0.00 0.00 38.03 3.66
347 350 8.253113 GGATTGAAAGAATCATTTGTACATGGT 58.747 33.333 0.00 0.00 38.03 3.55
348 351 8.991243 ATTGAAAGAATCATTTGTACATGGTG 57.009 30.769 0.00 0.00 38.03 4.17
349 352 6.389091 TGAAAGAATCATTTGTACATGGTGC 58.611 36.000 0.00 0.00 31.50 5.01
350 353 4.989279 AGAATCATTTGTACATGGTGCC 57.011 40.909 0.00 0.00 0.00 5.01
351 354 4.343231 AGAATCATTTGTACATGGTGCCA 58.657 39.130 0.00 0.00 0.00 4.92
352 355 4.158394 AGAATCATTTGTACATGGTGCCAC 59.842 41.667 0.00 0.00 0.00 5.01
353 356 2.868899 TCATTTGTACATGGTGCCACA 58.131 42.857 0.00 0.00 0.00 4.17
354 357 2.556189 TCATTTGTACATGGTGCCACAC 59.444 45.455 0.00 0.00 0.00 3.82
355 358 2.058593 TTTGTACATGGTGCCACACA 57.941 45.000 0.00 0.00 35.86 3.72
356 359 2.058593 TTGTACATGGTGCCACACAA 57.941 45.000 0.00 9.45 35.86 3.33
357 360 2.284754 TGTACATGGTGCCACACAAT 57.715 45.000 0.00 0.00 35.86 2.71
359 362 0.887247 TACATGGTGCCACACAATGC 59.113 50.000 13.73 0.00 46.48 3.56
360 363 1.114119 ACATGGTGCCACACAATGCA 61.114 50.000 13.73 0.00 46.48 3.96
364 367 4.194660 TGCCACACAATGCACCAT 57.805 50.000 0.00 0.00 31.31 3.55
365 368 2.438730 TGCCACACAATGCACCATT 58.561 47.368 0.00 0.00 34.04 3.16
375 378 3.719924 CAATGCACCATTGTCTTGTTGT 58.280 40.909 9.23 0.00 44.12 3.32
376 379 2.867287 TGCACCATTGTCTTGTTGTG 57.133 45.000 0.00 0.00 0.00 3.33
377 380 1.202394 TGCACCATTGTCTTGTTGTGC 60.202 47.619 5.54 5.54 46.85 4.57
378 381 1.067516 GCACCATTGTCTTGTTGTGCT 59.932 47.619 5.27 0.00 44.16 4.40
379 382 2.293122 GCACCATTGTCTTGTTGTGCTA 59.707 45.455 5.27 0.00 44.16 3.49
380 383 3.853307 GCACCATTGTCTTGTTGTGCTAC 60.853 47.826 5.27 0.00 44.16 3.58
381 384 2.548057 ACCATTGTCTTGTTGTGCTACG 59.452 45.455 0.00 0.00 0.00 3.51
382 385 2.548057 CCATTGTCTTGTTGTGCTACGT 59.452 45.455 0.00 0.00 0.00 3.57
383 386 3.003275 CCATTGTCTTGTTGTGCTACGTT 59.997 43.478 0.00 0.00 0.00 3.99
384 387 3.936902 TTGTCTTGTTGTGCTACGTTC 57.063 42.857 0.00 0.00 0.00 3.95
385 388 3.173668 TGTCTTGTTGTGCTACGTTCT 57.826 42.857 0.00 0.00 0.00 3.01
386 389 2.863740 TGTCTTGTTGTGCTACGTTCTG 59.136 45.455 0.00 0.00 0.00 3.02
387 390 1.864711 TCTTGTTGTGCTACGTTCTGC 59.135 47.619 0.00 0.00 0.00 4.26
388 391 0.941542 TTGTTGTGCTACGTTCTGCC 59.058 50.000 0.00 0.00 0.00 4.85
389 392 0.179070 TGTTGTGCTACGTTCTGCCA 60.179 50.000 0.00 0.00 0.00 4.92
390 393 0.512952 GTTGTGCTACGTTCTGCCAG 59.487 55.000 0.00 0.00 0.00 4.85
391 394 0.105964 TTGTGCTACGTTCTGCCAGT 59.894 50.000 0.00 0.00 0.00 4.00
392 395 0.599991 TGTGCTACGTTCTGCCAGTG 60.600 55.000 0.00 0.00 0.00 3.66
393 396 1.005037 TGCTACGTTCTGCCAGTGG 60.005 57.895 4.20 4.20 0.00 4.00
394 397 1.741770 GCTACGTTCTGCCAGTGGG 60.742 63.158 12.15 0.00 37.18 4.61
411 414 2.206576 GGGCATTCTCCCATCCATAC 57.793 55.000 0.00 0.00 45.82 2.39
412 415 1.707427 GGGCATTCTCCCATCCATACT 59.293 52.381 0.00 0.00 45.82 2.12
413 416 2.108952 GGGCATTCTCCCATCCATACTT 59.891 50.000 0.00 0.00 45.82 2.24
414 417 3.152341 GGCATTCTCCCATCCATACTTG 58.848 50.000 0.00 0.00 0.00 3.16
415 418 2.555757 GCATTCTCCCATCCATACTTGC 59.444 50.000 0.00 0.00 0.00 4.01
416 419 3.824133 CATTCTCCCATCCATACTTGCA 58.176 45.455 0.00 0.00 0.00 4.08
417 420 4.404640 CATTCTCCCATCCATACTTGCAT 58.595 43.478 0.00 0.00 0.00 3.96
418 421 3.497103 TCTCCCATCCATACTTGCATG 57.503 47.619 0.00 0.00 0.00 4.06
419 422 1.884579 CTCCCATCCATACTTGCATGC 59.115 52.381 11.82 11.82 0.00 4.06
420 423 0.594602 CCCATCCATACTTGCATGCG 59.405 55.000 14.09 1.59 0.00 4.73
421 424 1.311859 CCATCCATACTTGCATGCGT 58.688 50.000 14.09 8.38 0.00 5.24
422 425 2.493035 CCATCCATACTTGCATGCGTA 58.507 47.619 14.09 10.49 0.00 4.42
423 426 2.224079 CCATCCATACTTGCATGCGTAC 59.776 50.000 14.09 0.00 0.00 3.67
424 427 1.566404 TCCATACTTGCATGCGTACG 58.434 50.000 14.09 11.84 0.00 3.67
425 428 0.042188 CCATACTTGCATGCGTACGC 60.042 55.000 32.49 32.49 42.35 4.42
453 456 7.582667 AAAAACTGTAAACTCAGGCTAACAT 57.417 32.000 0.00 0.00 39.48 2.71
454 457 6.803154 AAACTGTAAACTCAGGCTAACATC 57.197 37.500 0.00 0.00 39.48 3.06
455 458 5.483685 ACTGTAAACTCAGGCTAACATCA 57.516 39.130 0.00 0.00 39.48 3.07
456 459 6.054860 ACTGTAAACTCAGGCTAACATCAT 57.945 37.500 0.00 0.00 39.48 2.45
457 460 6.109359 ACTGTAAACTCAGGCTAACATCATC 58.891 40.000 0.00 0.00 39.48 2.92
458 461 6.070538 ACTGTAAACTCAGGCTAACATCATCT 60.071 38.462 0.00 0.00 39.48 2.90
459 462 6.108687 TGTAAACTCAGGCTAACATCATCTG 58.891 40.000 0.00 0.00 0.00 2.90
460 463 4.833478 AACTCAGGCTAACATCATCTGT 57.167 40.909 0.00 0.00 40.84 3.41
461 464 5.939764 AACTCAGGCTAACATCATCTGTA 57.060 39.130 0.00 0.00 36.98 2.74
462 465 6.491714 AACTCAGGCTAACATCATCTGTAT 57.508 37.500 0.00 0.00 36.98 2.29
463 466 6.491714 ACTCAGGCTAACATCATCTGTATT 57.508 37.500 0.00 0.00 36.98 1.89
464 467 7.603180 ACTCAGGCTAACATCATCTGTATTA 57.397 36.000 0.00 0.00 36.98 0.98
465 468 8.200024 ACTCAGGCTAACATCATCTGTATTAT 57.800 34.615 0.00 0.00 36.98 1.28
466 469 8.654997 ACTCAGGCTAACATCATCTGTATTATT 58.345 33.333 0.00 0.00 36.98 1.40
504 507 9.828852 TCAAATTTGCAAAATGATTTATCTTGC 57.171 25.926 17.19 5.58 42.12 4.01
509 512 7.725818 TGCAAAATGATTTATCTTGCAAACA 57.274 28.000 11.34 0.00 46.77 2.83
510 513 8.151141 TGCAAAATGATTTATCTTGCAAACAA 57.849 26.923 11.34 0.00 46.77 2.83
511 514 8.784994 TGCAAAATGATTTATCTTGCAAACAAT 58.215 25.926 11.34 0.00 46.77 2.71
512 515 9.269415 GCAAAATGATTTATCTTGCAAACAATC 57.731 29.630 0.00 6.60 41.55 2.67
517 520 8.706492 TGATTTATCTTGCAAACAATCATTCC 57.294 30.769 13.97 0.00 34.61 3.01
518 521 7.488792 TGATTTATCTTGCAAACAATCATTCCG 59.511 33.333 13.97 0.00 34.61 4.30
519 522 6.507958 TTATCTTGCAAACAATCATTCCGA 57.492 33.333 0.00 0.00 34.61 4.55
520 523 5.587388 ATCTTGCAAACAATCATTCCGAT 57.413 34.783 0.00 0.00 34.61 4.18
521 524 5.389859 TCTTGCAAACAATCATTCCGATT 57.610 34.783 0.00 0.00 45.60 3.34
522 525 6.507958 TCTTGCAAACAATCATTCCGATTA 57.492 33.333 0.00 0.00 42.70 1.75
523 526 6.554419 TCTTGCAAACAATCATTCCGATTAG 58.446 36.000 0.00 0.00 42.70 1.73
524 527 4.671377 TGCAAACAATCATTCCGATTAGC 58.329 39.130 0.00 0.00 42.70 3.09
525 528 4.157472 TGCAAACAATCATTCCGATTAGCA 59.843 37.500 0.00 0.00 42.70 3.49
526 529 5.163530 TGCAAACAATCATTCCGATTAGCAT 60.164 36.000 0.00 0.00 42.70 3.79
527 530 5.750067 GCAAACAATCATTCCGATTAGCATT 59.250 36.000 0.00 0.00 42.70 3.56
528 531 6.256321 GCAAACAATCATTCCGATTAGCATTT 59.744 34.615 0.00 0.00 42.70 2.32
529 532 7.201548 GCAAACAATCATTCCGATTAGCATTTT 60.202 33.333 0.00 0.00 42.70 1.82
530 533 7.760131 AACAATCATTCCGATTAGCATTTTG 57.240 32.000 0.00 0.00 42.70 2.44
531 534 6.866480 ACAATCATTCCGATTAGCATTTTGT 58.134 32.000 0.00 0.00 42.70 2.83
532 535 6.753279 ACAATCATTCCGATTAGCATTTTGTG 59.247 34.615 0.00 0.00 42.70 3.33
533 536 5.895636 TCATTCCGATTAGCATTTTGTGT 57.104 34.783 0.00 0.00 0.00 3.72
534 537 6.266168 TCATTCCGATTAGCATTTTGTGTT 57.734 33.333 0.00 0.00 0.00 3.32
535 538 6.092092 TCATTCCGATTAGCATTTTGTGTTG 58.908 36.000 0.00 0.00 0.00 3.33
536 539 5.697473 TTCCGATTAGCATTTTGTGTTGA 57.303 34.783 0.00 0.00 0.00 3.18
537 540 5.697473 TCCGATTAGCATTTTGTGTTGAA 57.303 34.783 0.00 0.00 0.00 2.69
538 541 5.457140 TCCGATTAGCATTTTGTGTTGAAC 58.543 37.500 0.00 0.00 0.00 3.18
539 542 4.320690 CCGATTAGCATTTTGTGTTGAACG 59.679 41.667 0.00 0.00 0.00 3.95
540 543 4.909305 CGATTAGCATTTTGTGTTGAACGT 59.091 37.500 0.00 0.00 0.00 3.99
541 544 5.058008 CGATTAGCATTTTGTGTTGAACGTC 59.942 40.000 0.00 0.00 0.00 4.34
542 545 3.773860 AGCATTTTGTGTTGAACGTCA 57.226 38.095 0.00 0.00 0.00 4.35
543 546 3.694734 AGCATTTTGTGTTGAACGTCAG 58.305 40.909 0.00 0.00 0.00 3.51
544 547 2.788786 GCATTTTGTGTTGAACGTCAGG 59.211 45.455 0.00 0.00 0.00 3.86
545 548 3.733684 GCATTTTGTGTTGAACGTCAGGT 60.734 43.478 0.00 0.00 0.00 4.00
546 549 4.420168 CATTTTGTGTTGAACGTCAGGTT 58.580 39.130 0.00 0.00 42.96 3.50
556 559 3.469008 AACGTCAGGTTCATCTCAACA 57.531 42.857 0.00 0.00 31.79 3.33
557 560 2.755650 ACGTCAGGTTCATCTCAACAC 58.244 47.619 0.00 0.00 0.00 3.32
558 561 1.721389 CGTCAGGTTCATCTCAACACG 59.279 52.381 0.00 0.00 0.00 4.49
559 562 2.069273 GTCAGGTTCATCTCAACACGG 58.931 52.381 0.00 0.00 0.00 4.94
560 563 1.001974 TCAGGTTCATCTCAACACGGG 59.998 52.381 0.00 0.00 0.00 5.28
561 564 1.056660 AGGTTCATCTCAACACGGGT 58.943 50.000 0.00 0.00 0.00 5.28
562 565 1.420138 AGGTTCATCTCAACACGGGTT 59.580 47.619 0.00 0.00 37.87 4.11
563 566 2.158667 AGGTTCATCTCAACACGGGTTT 60.159 45.455 0.00 0.00 34.21 3.27
564 567 2.225727 GGTTCATCTCAACACGGGTTTC 59.774 50.000 0.00 0.00 34.21 2.78
565 568 2.875933 GTTCATCTCAACACGGGTTTCA 59.124 45.455 0.00 0.00 34.21 2.69
566 569 3.201353 TCATCTCAACACGGGTTTCAA 57.799 42.857 0.00 0.00 34.21 2.69
567 570 3.750371 TCATCTCAACACGGGTTTCAAT 58.250 40.909 0.00 0.00 34.21 2.57
568 571 4.900684 TCATCTCAACACGGGTTTCAATA 58.099 39.130 0.00 0.00 34.21 1.90
569 572 5.496556 TCATCTCAACACGGGTTTCAATAT 58.503 37.500 0.00 0.00 34.21 1.28
570 573 5.353956 TCATCTCAACACGGGTTTCAATATG 59.646 40.000 0.00 1.05 34.21 1.78
571 574 4.900684 TCTCAACACGGGTTTCAATATGA 58.099 39.130 0.00 0.00 34.21 2.15
572 575 5.309638 TCTCAACACGGGTTTCAATATGAA 58.690 37.500 0.00 0.00 34.21 2.57
573 576 5.765677 TCTCAACACGGGTTTCAATATGAAA 59.234 36.000 0.00 1.57 43.37 2.69
597 600 6.837307 CAGCATACTGTTATGTTTTGTTCG 57.163 37.500 0.00 0.00 39.22 3.95
598 601 6.598525 CAGCATACTGTTATGTTTTGTTCGA 58.401 36.000 0.00 0.00 39.22 3.71
599 602 7.075121 CAGCATACTGTTATGTTTTGTTCGAA 58.925 34.615 0.00 0.00 39.22 3.71
600 603 7.589587 CAGCATACTGTTATGTTTTGTTCGAAA 59.410 33.333 0.00 0.00 39.22 3.46
601 604 8.296713 AGCATACTGTTATGTTTTGTTCGAAAT 58.703 29.630 0.00 0.00 37.92 2.17
602 605 9.549509 GCATACTGTTATGTTTTGTTCGAAATA 57.450 29.630 0.00 0.00 37.92 1.40
619 622 9.052080 GTTCGAAATACTAAAACAGAATCAAGC 57.948 33.333 0.00 0.00 0.00 4.01
620 623 8.547967 TCGAAATACTAAAACAGAATCAAGCT 57.452 30.769 0.00 0.00 0.00 3.74
621 624 8.656849 TCGAAATACTAAAACAGAATCAAGCTC 58.343 33.333 0.00 0.00 0.00 4.09
622 625 8.443160 CGAAATACTAAAACAGAATCAAGCTCA 58.557 33.333 0.00 0.00 0.00 4.26
624 627 9.899226 AAATACTAAAACAGAATCAAGCTCAAC 57.101 29.630 0.00 0.00 0.00 3.18
625 628 6.942532 ACTAAAACAGAATCAAGCTCAACA 57.057 33.333 0.00 0.00 0.00 3.33
626 629 7.333528 ACTAAAACAGAATCAAGCTCAACAA 57.666 32.000 0.00 0.00 0.00 2.83
627 630 7.196331 ACTAAAACAGAATCAAGCTCAACAAC 58.804 34.615 0.00 0.00 0.00 3.32
628 631 5.581126 AAACAGAATCAAGCTCAACAACA 57.419 34.783 0.00 0.00 0.00 3.33
629 632 5.581126 AACAGAATCAAGCTCAACAACAA 57.419 34.783 0.00 0.00 0.00 2.83
630 633 5.581126 ACAGAATCAAGCTCAACAACAAA 57.419 34.783 0.00 0.00 0.00 2.83
631 634 5.343249 ACAGAATCAAGCTCAACAACAAAC 58.657 37.500 0.00 0.00 0.00 2.93
632 635 4.741676 CAGAATCAAGCTCAACAACAAACC 59.258 41.667 0.00 0.00 0.00 3.27
633 636 4.402155 AGAATCAAGCTCAACAACAAACCA 59.598 37.500 0.00 0.00 0.00 3.67
634 637 4.734398 ATCAAGCTCAACAACAAACCAA 57.266 36.364 0.00 0.00 0.00 3.67
635 638 4.734398 TCAAGCTCAACAACAAACCAAT 57.266 36.364 0.00 0.00 0.00 3.16
636 639 5.083533 TCAAGCTCAACAACAAACCAATT 57.916 34.783 0.00 0.00 0.00 2.32
637 640 5.486526 TCAAGCTCAACAACAAACCAATTT 58.513 33.333 0.00 0.00 0.00 1.82
638 641 6.634805 TCAAGCTCAACAACAAACCAATTTA 58.365 32.000 0.00 0.00 0.00 1.40
639 642 7.099764 TCAAGCTCAACAACAAACCAATTTAA 58.900 30.769 0.00 0.00 0.00 1.52
640 643 7.277539 TCAAGCTCAACAACAAACCAATTTAAG 59.722 33.333 0.00 0.00 0.00 1.85
641 644 6.048509 AGCTCAACAACAAACCAATTTAAGG 58.951 36.000 0.00 0.00 0.00 2.69
642 645 6.045955 GCTCAACAACAAACCAATTTAAGGA 58.954 36.000 0.00 0.00 0.00 3.36
643 646 6.019075 GCTCAACAACAAACCAATTTAAGGAC 60.019 38.462 0.00 0.00 0.00 3.85
644 647 6.342111 TCAACAACAAACCAATTTAAGGACC 58.658 36.000 0.00 0.00 0.00 4.46
645 648 6.155393 TCAACAACAAACCAATTTAAGGACCT 59.845 34.615 0.00 0.00 0.00 3.85
646 649 6.156748 ACAACAAACCAATTTAAGGACCTC 57.843 37.500 0.00 0.00 0.00 3.85
647 650 5.659079 ACAACAAACCAATTTAAGGACCTCA 59.341 36.000 0.00 0.00 0.00 3.86
648 651 6.326323 ACAACAAACCAATTTAAGGACCTCAT 59.674 34.615 0.00 0.00 0.00 2.90
649 652 7.507616 ACAACAAACCAATTTAAGGACCTCATA 59.492 33.333 0.00 0.00 0.00 2.15
650 653 8.364142 CAACAAACCAATTTAAGGACCTCATAA 58.636 33.333 0.00 0.00 0.00 1.90
651 654 8.122472 ACAAACCAATTTAAGGACCTCATAAG 57.878 34.615 0.00 0.00 0.00 1.73
652 655 7.947890 ACAAACCAATTTAAGGACCTCATAAGA 59.052 33.333 0.00 0.00 0.00 2.10
653 656 8.971073 CAAACCAATTTAAGGACCTCATAAGAT 58.029 33.333 0.00 0.00 0.00 2.40
654 657 9.547279 AAACCAATTTAAGGACCTCATAAGATT 57.453 29.630 0.00 0.00 0.00 2.40
682 685 1.798223 TCAAATGAGTTTGACGCGAGG 59.202 47.619 15.93 0.00 46.49 4.63
683 686 0.517316 AAATGAGTTTGACGCGAGGC 59.483 50.000 15.93 1.62 42.12 4.70
690 693 2.733218 TGACGCGAGGCACGAAAG 60.733 61.111 15.93 0.90 46.72 2.62
691 694 3.479269 GACGCGAGGCACGAAAGG 61.479 66.667 15.93 0.00 45.77 3.11
692 695 3.909258 GACGCGAGGCACGAAAGGA 62.909 63.158 15.93 0.00 45.77 3.36
693 696 3.479269 CGCGAGGCACGAAAGGAC 61.479 66.667 8.92 0.00 45.77 3.85
694 697 2.048127 GCGAGGCACGAAAGGACT 60.048 61.111 8.92 0.00 45.77 3.85
695 698 2.383527 GCGAGGCACGAAAGGACTG 61.384 63.158 8.92 0.00 45.77 3.51
696 699 1.738099 CGAGGCACGAAAGGACTGG 60.738 63.158 0.00 0.00 45.77 4.00
697 700 2.032681 AGGCACGAAAGGACTGGC 59.967 61.111 0.00 0.00 0.00 4.85
698 701 2.281484 GGCACGAAAGGACTGGCA 60.281 61.111 0.00 0.00 0.00 4.92
699 702 1.675641 GGCACGAAAGGACTGGCAT 60.676 57.895 0.00 0.00 0.00 4.40
700 703 1.503542 GCACGAAAGGACTGGCATG 59.496 57.895 0.00 0.00 0.00 4.06
701 704 1.503542 CACGAAAGGACTGGCATGC 59.496 57.895 9.90 9.90 0.00 4.06
702 705 1.073025 ACGAAAGGACTGGCATGCA 59.927 52.632 21.36 4.79 0.00 3.96
708 711 3.520691 AAGGACTGGCATGCATGATAT 57.479 42.857 30.64 11.65 0.00 1.63
710 713 4.217836 AGGACTGGCATGCATGATATAG 57.782 45.455 30.64 20.90 0.00 1.31
733 736 1.971167 CGCAAAGCAGGGGCACTTA 60.971 57.895 0.00 0.00 44.61 2.24
734 737 1.315257 CGCAAAGCAGGGGCACTTAT 61.315 55.000 0.00 0.00 44.61 1.73
735 738 0.457443 GCAAAGCAGGGGCACTTATC 59.543 55.000 0.00 0.00 44.61 1.75
736 739 1.957113 GCAAAGCAGGGGCACTTATCT 60.957 52.381 0.00 0.00 44.61 1.98
737 740 2.683742 GCAAAGCAGGGGCACTTATCTA 60.684 50.000 0.00 0.00 44.61 1.98
738 741 3.209410 CAAAGCAGGGGCACTTATCTAG 58.791 50.000 0.00 0.00 44.61 2.43
739 742 0.761802 AGCAGGGGCACTTATCTAGC 59.238 55.000 0.00 0.00 44.61 3.42
740 743 0.469917 GCAGGGGCACTTATCTAGCA 59.530 55.000 0.00 0.00 40.72 3.49
741 744 1.542108 GCAGGGGCACTTATCTAGCAG 60.542 57.143 0.00 0.00 40.72 4.24
742 745 0.761802 AGGGGCACTTATCTAGCAGC 59.238 55.000 0.00 0.00 0.00 5.25
743 746 0.469917 GGGGCACTTATCTAGCAGCA 59.530 55.000 0.00 0.00 31.73 4.41
745 748 2.421619 GGGCACTTATCTAGCAGCATC 58.578 52.381 0.00 0.00 31.73 3.91
746 749 2.224378 GGGCACTTATCTAGCAGCATCA 60.224 50.000 0.00 0.00 31.73 3.07
747 750 3.065655 GGCACTTATCTAGCAGCATCAG 58.934 50.000 0.00 0.00 31.73 2.90
748 751 2.479656 GCACTTATCTAGCAGCATCAGC 59.520 50.000 0.00 0.00 42.56 4.26
749 752 3.725490 CACTTATCTAGCAGCATCAGCA 58.275 45.455 0.00 0.00 45.49 4.41
750 753 4.316645 CACTTATCTAGCAGCATCAGCAT 58.683 43.478 0.00 0.00 45.49 3.79
754 916 2.601905 TCTAGCAGCATCAGCATAGGA 58.398 47.619 0.00 0.00 45.49 2.94
780 942 5.045872 TCAGCTGTCAAATGTATCGATCAG 58.954 41.667 14.67 1.32 0.00 2.90
791 953 4.827087 CGATCAGCTGCCCGTGCT 62.827 66.667 9.47 0.00 42.06 4.40
845 1008 2.686816 CGGGCGAACCACCAATCAC 61.687 63.158 0.00 0.00 40.22 3.06
854 1026 0.611896 CCACCAATCACTTCCACCCC 60.612 60.000 0.00 0.00 0.00 4.95
869 1041 1.295423 CCCCGCTCCCCATATAACG 59.705 63.158 0.00 0.00 0.00 3.18
894 1069 1.080705 CGTCGTTGACCTCCTCCAC 60.081 63.158 0.00 0.00 0.00 4.02
948 1123 1.667724 GACACTTGCTCCATCCATTCG 59.332 52.381 0.00 0.00 0.00 3.34
995 1182 0.175073 GACATTCCGCCGGAGTAGTT 59.825 55.000 5.05 0.00 31.21 2.24
997 1184 1.153429 ATTCCGCCGGAGTAGTTGC 60.153 57.895 5.05 0.00 31.21 4.17
1007 1197 2.677902 CGGAGTAGTTGCACATGGTGAT 60.678 50.000 0.00 0.00 35.23 3.06
1008 1198 3.430236 CGGAGTAGTTGCACATGGTGATA 60.430 47.826 0.00 0.00 35.23 2.15
1126 1319 3.063997 GCTCGTGTTTCACCTGAATATGG 59.936 47.826 0.00 0.00 33.54 2.74
1136 1329 2.158957 ACCTGAATATGGGTACGTGCTG 60.159 50.000 3.01 0.00 33.59 4.41
1137 1330 2.102420 CCTGAATATGGGTACGTGCTGA 59.898 50.000 3.01 0.00 0.00 4.26
1138 1331 3.431626 CCTGAATATGGGTACGTGCTGAA 60.432 47.826 3.01 0.00 0.00 3.02
1139 1332 3.527533 TGAATATGGGTACGTGCTGAAC 58.472 45.455 3.01 0.00 0.00 3.18
1140 1333 3.196901 TGAATATGGGTACGTGCTGAACT 59.803 43.478 3.01 0.00 0.00 3.01
1141 1334 2.665649 TATGGGTACGTGCTGAACTG 57.334 50.000 3.01 0.00 0.00 3.16
1142 1335 0.685097 ATGGGTACGTGCTGAACTGT 59.315 50.000 3.01 0.00 0.00 3.55
1143 1336 0.466543 TGGGTACGTGCTGAACTGTT 59.533 50.000 3.01 0.00 0.00 3.16
1144 1337 0.865769 GGGTACGTGCTGAACTGTTG 59.134 55.000 3.01 0.00 0.00 3.33
1145 1338 0.234884 GGTACGTGCTGAACTGTTGC 59.765 55.000 3.01 0.00 0.00 4.17
1146 1339 1.217882 GTACGTGCTGAACTGTTGCT 58.782 50.000 0.00 0.00 0.00 3.91
1147 1340 1.070577 GTACGTGCTGAACTGTTGCTG 60.071 52.381 0.00 0.00 0.00 4.41
1148 1341 0.461870 ACGTGCTGAACTGTTGCTGA 60.462 50.000 0.00 0.00 0.00 4.26
1149 1342 0.657312 CGTGCTGAACTGTTGCTGAA 59.343 50.000 0.00 0.00 0.00 3.02
1150 1343 1.265095 CGTGCTGAACTGTTGCTGAAT 59.735 47.619 0.00 0.00 0.00 2.57
1151 1344 2.480037 CGTGCTGAACTGTTGCTGAATA 59.520 45.455 0.00 0.00 0.00 1.75
1152 1345 3.125829 CGTGCTGAACTGTTGCTGAATAT 59.874 43.478 0.00 0.00 0.00 1.28
1153 1346 4.409570 GTGCTGAACTGTTGCTGAATATG 58.590 43.478 0.00 0.00 0.00 1.78
1154 1347 3.441222 TGCTGAACTGTTGCTGAATATGG 59.559 43.478 0.00 0.00 0.00 2.74
1155 1348 3.181493 GCTGAACTGTTGCTGAATATGGG 60.181 47.826 0.00 0.00 0.00 4.00
1156 1349 4.012374 CTGAACTGTTGCTGAATATGGGT 58.988 43.478 0.00 0.00 0.00 4.51
1157 1350 3.758023 TGAACTGTTGCTGAATATGGGTG 59.242 43.478 0.00 0.00 0.00 4.61
1158 1351 3.719268 ACTGTTGCTGAATATGGGTGA 57.281 42.857 0.00 0.00 0.00 4.02
1159 1352 3.614092 ACTGTTGCTGAATATGGGTGAG 58.386 45.455 0.00 0.00 0.00 3.51
1160 1353 3.009473 ACTGTTGCTGAATATGGGTGAGT 59.991 43.478 0.00 0.00 0.00 3.41
1161 1354 4.012374 CTGTTGCTGAATATGGGTGAGTT 58.988 43.478 0.00 0.00 0.00 3.01
1162 1355 3.758023 TGTTGCTGAATATGGGTGAGTTG 59.242 43.478 0.00 0.00 0.00 3.16
1163 1356 3.998913 TGCTGAATATGGGTGAGTTGA 57.001 42.857 0.00 0.00 0.00 3.18
1164 1357 3.609853 TGCTGAATATGGGTGAGTTGAC 58.390 45.455 0.00 0.00 0.00 3.18
1165 1358 3.008923 TGCTGAATATGGGTGAGTTGACA 59.991 43.478 0.00 0.00 0.00 3.58
1166 1359 4.009675 GCTGAATATGGGTGAGTTGACAA 58.990 43.478 0.00 0.00 0.00 3.18
1167 1360 4.458989 GCTGAATATGGGTGAGTTGACAAA 59.541 41.667 0.00 0.00 0.00 2.83
1168 1361 5.619981 GCTGAATATGGGTGAGTTGACAAAC 60.620 44.000 0.00 0.00 36.47 2.93
1184 1377 1.455786 CAAACACTAGCTGACGAACGG 59.544 52.381 0.00 0.00 0.00 4.44
1496 1717 1.375908 GAACATGAGGCCGCTGTCA 60.376 57.895 8.34 0.61 0.00 3.58
1625 1847 5.323371 ACAGAGTAAGATCAAGCACTCTC 57.677 43.478 12.78 3.88 44.51 3.20
1634 1859 4.584325 AGATCAAGCACTCTCCTACTGATC 59.416 45.833 0.00 0.00 0.00 2.92
1666 1903 2.393271 AGAACATCTTGCCTTCCTCG 57.607 50.000 0.00 0.00 0.00 4.63
1692 2002 0.537188 TTCCTCTGCTGATCCGAACC 59.463 55.000 0.00 0.00 0.00 3.62
1946 2276 1.686110 ACCTCCATCTCACCGGACC 60.686 63.158 9.46 0.00 0.00 4.46
1971 2301 4.217334 TCAATTCAATTTAGGCGCTGTCAA 59.783 37.500 7.64 0.00 0.00 3.18
1980 2310 6.449635 TTTAGGCGCTGTCAATATTTTGAT 57.550 33.333 7.64 0.00 43.49 2.57
1981 2311 7.561021 TTTAGGCGCTGTCAATATTTTGATA 57.439 32.000 7.64 0.00 43.49 2.15
1990 2320 7.667043 TGTCAATATTTTGATAGCCGTATCC 57.333 36.000 1.79 0.00 43.49 2.59
1991 2321 7.450074 TGTCAATATTTTGATAGCCGTATCCT 58.550 34.615 1.79 0.00 43.49 3.24
1992 2322 7.387673 TGTCAATATTTTGATAGCCGTATCCTG 59.612 37.037 1.79 0.00 43.49 3.86
1993 2323 6.371548 TCAATATTTTGATAGCCGTATCCTGC 59.628 38.462 0.00 0.00 36.94 4.85
1994 2324 3.552132 TTTTGATAGCCGTATCCTGCA 57.448 42.857 0.00 0.00 35.06 4.41
1995 2325 3.552132 TTTGATAGCCGTATCCTGCAA 57.448 42.857 0.00 0.00 35.06 4.08
1996 2326 3.552132 TTGATAGCCGTATCCTGCAAA 57.448 42.857 0.00 0.00 35.06 3.68
1997 2327 3.552132 TGATAGCCGTATCCTGCAAAA 57.448 42.857 0.00 0.00 35.06 2.44
1998 2328 3.879998 TGATAGCCGTATCCTGCAAAAA 58.120 40.909 0.00 0.00 35.06 1.94
2050 2380 2.173382 GCGATGTGGTTGCGTCAC 59.827 61.111 0.00 0.00 35.82 3.67
2073 2403 0.465705 CCACCTAGATGCCACGTCAT 59.534 55.000 0.00 0.00 0.00 3.06
2079 2409 1.592669 GATGCCACGTCATCTCCGG 60.593 63.158 9.39 0.00 39.67 5.14
2144 2780 2.497273 TGATCCATCTCTCGCACTTTCA 59.503 45.455 0.00 0.00 0.00 2.69
2151 2788 4.462508 TCTCTCGCACTTTCATCTCATT 57.537 40.909 0.00 0.00 0.00 2.57
2186 2845 4.927267 TCAAGGCTCCTTCTTGGATTTA 57.073 40.909 0.00 0.00 45.16 1.40
2194 2853 6.095377 GCTCCTTCTTGGATTTACACAAATG 58.905 40.000 0.00 0.00 45.16 2.32
2308 3309 0.904649 TAGGACGTAGAGGACACGGA 59.095 55.000 0.00 0.00 43.59 4.69
2309 3312 0.392729 AGGACGTAGAGGACACGGAG 60.393 60.000 0.00 0.00 43.59 4.63
2461 3642 3.425162 AGAAGATGAAGGTCCAACCAC 57.575 47.619 0.00 0.00 41.95 4.16
2465 3646 0.773644 ATGAAGGTCCAACCACAGCT 59.226 50.000 0.00 0.00 41.95 4.24
2467 3648 0.890996 GAAGGTCCAACCACAGCTGG 60.891 60.000 19.93 4.24 41.95 4.85
2468 3649 2.282462 GGTCCAACCACAGCTGGG 60.282 66.667 19.93 15.23 42.74 4.45
2484 3665 3.583086 AGCTGGGCGATAACCTATTACAT 59.417 43.478 0.00 0.00 0.00 2.29
2492 3673 5.744345 GCGATAACCTATTACATGATCCTCG 59.256 44.000 0.00 0.00 0.00 4.63
2507 3688 2.244695 TCCTCGTCCAAACTAGCTGAA 58.755 47.619 0.00 0.00 0.00 3.02
2543 4804 3.008485 ACCTTTTTCAAAAACTGCACCCA 59.992 39.130 0.00 0.00 0.00 4.51
2579 4841 0.305617 CGCACGTTGCATAGCATCAT 59.694 50.000 9.95 0.00 45.36 2.45
2580 4842 1.750351 GCACGTTGCATAGCATCATG 58.250 50.000 5.30 0.00 44.26 3.07
2583 4845 3.846023 GCACGTTGCATAGCATCATGTAC 60.846 47.826 5.30 0.00 44.26 2.90
2667 5089 7.690952 AAAAACCCAATCATCATGGAAATTG 57.309 32.000 0.00 0.71 40.56 2.32
2673 5095 6.993308 CCCAATCATCATGGAAATTGCAAATA 59.007 34.615 1.71 0.00 40.56 1.40
2682 5104 6.232581 TGGAAATTGCAAATAACCCATAGG 57.767 37.500 1.71 0.00 40.04 2.57
2686 5108 7.201992 GGAAATTGCAAATAACCCATAGGATGA 60.202 37.037 1.71 0.00 36.73 2.92
2687 5109 6.655078 ATTGCAAATAACCCATAGGATGAC 57.345 37.500 1.71 0.00 36.73 3.06
2688 5110 5.122707 TGCAAATAACCCATAGGATGACA 57.877 39.130 0.00 0.00 36.73 3.58
2689 5111 5.704354 TGCAAATAACCCATAGGATGACAT 58.296 37.500 0.00 0.00 36.73 3.06
2690 5112 6.846988 TGCAAATAACCCATAGGATGACATA 58.153 36.000 0.00 0.00 36.73 2.29
2691 5113 6.714810 TGCAAATAACCCATAGGATGACATAC 59.285 38.462 0.00 0.00 36.73 2.39
2705 5127 2.037121 TGACATACACACACACTCCCAG 59.963 50.000 0.00 0.00 0.00 4.45
2707 5129 2.037251 ACATACACACACACTCCCAGTC 59.963 50.000 0.00 0.00 0.00 3.51
2727 5149 6.423604 CCAGTCGAAAATGCACCTTAAATTTT 59.576 34.615 0.00 0.00 36.47 1.82
2751 5177 4.384868 GCATTAACCCTAGCCAGTTCCTTA 60.385 45.833 0.00 0.00 0.00 2.69
2782 5210 7.496529 TTAGAATTTCACTTCTCTTGGTGTG 57.503 36.000 0.00 0.00 36.82 3.82
2827 5255 4.396790 TGACGTTTTAAATATGAGTGCCCC 59.603 41.667 0.00 0.00 0.00 5.80
2882 5310 3.149196 GTTCCATCACCACACATCAAGT 58.851 45.455 0.00 0.00 0.00 3.16
2918 5894 0.251608 AATAATGGCGGTATGGGGGC 60.252 55.000 0.00 0.00 0.00 5.80
2963 5940 0.105246 AATTGAACCTGGGTGGGCAA 60.105 50.000 0.00 0.00 41.11 4.52
2975 5952 1.001181 GGTGGGCAAACTACACGACTA 59.999 52.381 0.00 0.00 36.02 2.59
3020 5997 1.407437 GGAGTGCCTTGTCCATAGTGG 60.407 57.143 0.00 0.00 39.43 4.00
3021 5998 0.620556 AGTGCCTTGTCCATAGTGGG 59.379 55.000 0.00 0.00 38.32 4.61
3022 5999 0.328258 GTGCCTTGTCCATAGTGGGT 59.672 55.000 0.00 0.00 38.32 4.51
3048 6025 7.932683 TTTTTAAAGGAGGATAAAAACCCCA 57.067 32.000 0.00 0.00 36.55 4.96
3051 6028 2.288525 AGGAGGATAAAAACCCCAGCT 58.711 47.619 0.00 0.00 0.00 4.24
3152 6129 6.122964 GGCCATTCTTCTAGGTAGAAAACAT 58.877 40.000 0.00 0.00 41.37 2.71
3180 6157 3.190118 GCAGGAGGTCATTTTGAGAACTG 59.810 47.826 0.00 0.00 32.05 3.16
3242 6222 3.214328 GCCAAAGAAGTTGTTGAGAGGA 58.786 45.455 0.00 0.00 35.23 3.71
3251 6231 2.572104 GTTGTTGAGAGGATGGGTAGGT 59.428 50.000 0.00 0.00 0.00 3.08
3262 6242 3.892588 GGATGGGTAGGTGAAGACTAGAG 59.107 52.174 0.00 0.00 0.00 2.43
3263 6243 4.386536 GGATGGGTAGGTGAAGACTAGAGA 60.387 50.000 0.00 0.00 0.00 3.10
3276 6256 4.708177 AGACTAGAGAGAGAGAGATGTGC 58.292 47.826 0.00 0.00 0.00 4.57
3310 6290 5.819991 AGGTGATTTAGAAGGAAGAATGCA 58.180 37.500 0.00 0.00 0.00 3.96
3495 6477 6.512342 TCATTGTCAATCATGCACACATAA 57.488 33.333 0.00 0.00 33.67 1.90
3603 6586 6.648310 AGCTAATTCATCACTTGTGATATCCG 59.352 38.462 14.86 4.60 0.00 4.18
3635 6618 4.278170 TGAAATTGTTAGACACCAGCAAGG 59.722 41.667 0.00 0.00 45.67 3.61
3814 6797 1.204146 TCGGCTTGGCTAGGATCTTT 58.796 50.000 0.00 0.00 0.00 2.52
3928 6914 9.605275 ATGAAATGCGATATGTATATGCTACTT 57.395 29.630 0.00 0.00 0.00 2.24
3998 6984 5.019470 TGTGATGGATAGTGTCTTCTCAGT 58.981 41.667 0.00 0.00 0.00 3.41
4185 7171 4.570772 TCTCGTCAACTGAACTTCCTTTTG 59.429 41.667 0.00 0.00 0.00 2.44
4187 7173 3.377172 CGTCAACTGAACTTCCTTTTGGT 59.623 43.478 0.00 0.00 41.38 3.67
4309 7296 1.739562 CCTCCTCTGCGTGCAAGAC 60.740 63.158 2.99 0.00 0.00 3.01
4369 7356 5.063438 GCTAATGCTCGTCAGTGAACAAATA 59.937 40.000 0.00 0.00 36.03 1.40
4373 7360 3.186409 GCTCGTCAGTGAACAAATAAGCA 59.814 43.478 0.00 0.00 0.00 3.91
4439 7426 3.433598 GCCATCAGCCATGTTAAGGAGTA 60.434 47.826 0.00 0.00 34.35 2.59
4520 7507 8.070171 CGCGATGATCTTGTTATTAGGATTTTT 58.930 33.333 0.00 0.00 0.00 1.94
4602 7590 4.397103 TGATCACATCTTGGACTGAAATGC 59.603 41.667 0.00 0.00 0.00 3.56
4617 7605 5.903764 TGAAATGCAGTGCAAATGTAAAC 57.096 34.783 23.90 8.39 43.62 2.01
4618 7606 5.354767 TGAAATGCAGTGCAAATGTAAACA 58.645 33.333 23.90 10.75 43.62 2.83
4837 7827 3.379372 CAGACATGAATTTACCCTGCCTG 59.621 47.826 0.00 0.00 0.00 4.85
4861 7851 3.393941 CCCTGGGCTTCTCTAGATCATTT 59.606 47.826 0.00 0.00 0.00 2.32
4862 7852 4.387598 CCTGGGCTTCTCTAGATCATTTG 58.612 47.826 0.00 0.00 0.00 2.32
4879 7869 4.157105 TCATTTGTGGATCTGCAATGACTG 59.843 41.667 0.00 0.00 0.00 3.51
4942 7932 6.824305 ATCAATGACAATTCCTTTCTCGTT 57.176 33.333 0.00 0.00 0.00 3.85
4943 7933 6.633500 TCAATGACAATTCCTTTCTCGTTT 57.367 33.333 0.00 0.00 0.00 3.60
4962 7952 2.940994 TCCCTTCGAATGTGGTTCAA 57.059 45.000 0.00 0.00 36.60 2.69
4971 7961 5.757886 TCGAATGTGGTTCAAAACTTCATC 58.242 37.500 0.00 0.00 36.60 2.92
4985 7975 9.190317 TCAAAACTTCATCTGCTCTAGATAGTA 57.810 33.333 0.00 0.00 44.34 1.82
4997 7987 5.663456 CTCTAGATAGTACTAGCCCTACCG 58.337 50.000 14.41 3.18 39.50 4.02
5007 7997 0.107361 AGCCCTACCGGTAATTGCAC 60.107 55.000 23.69 9.51 0.00 4.57
5106 8096 0.892755 TACCAACCACACTAGGCTCG 59.107 55.000 0.00 0.00 0.00 5.03
5131 8121 7.567571 GGTGTTCATGAATATCATACTTGTCG 58.432 38.462 12.12 0.00 34.28 4.35
5310 8300 8.961294 AATTTGAAAGAATTTGTGTGGAATGA 57.039 26.923 0.00 0.00 39.27 2.57
5423 8433 6.378582 GTTGGATGTATTCGTGTGAAATTGT 58.621 36.000 0.00 0.00 37.71 2.71
5468 8478 5.689383 TGATGTGCTTGGAGTTTTTAGAC 57.311 39.130 0.00 0.00 0.00 2.59
5472 8482 3.059120 GTGCTTGGAGTTTTTAGACCGAC 60.059 47.826 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.428171 CCATATGCCCAACTTGTTCTGG 59.572 50.000 0.00 0.00 0.00 3.86
83 84 2.210116 CTATGTGGTACAATCCCGTGC 58.790 52.381 0.00 0.00 44.16 5.34
99 100 5.591643 AAATTCTTATGGCGTACGCTATG 57.408 39.130 38.95 27.11 42.26 2.23
100 101 6.613755 AAAAATTCTTATGGCGTACGCTAT 57.386 33.333 35.82 35.82 44.40 2.97
134 136 7.980099 AGTAAAATATGGAAACTAGACTGTCCG 59.020 37.037 3.76 0.00 32.45 4.79
149 151 9.744468 GTTAACCCTATTTGCAGTAAAATATGG 57.256 33.333 8.03 8.03 40.68 2.74
155 157 6.999272 TCACAGTTAACCCTATTTGCAGTAAA 59.001 34.615 0.88 0.00 0.00 2.01
161 163 5.569413 CGAATCACAGTTAACCCTATTTGC 58.431 41.667 0.88 0.00 0.00 3.68
194 196 8.685838 TTGGTAGCAAACTAAAACACTCTAAT 57.314 30.769 4.54 0.00 0.00 1.73
235 237 5.390087 AGTTAGGTCTGCCTACTCTATGA 57.610 43.478 0.00 0.00 46.38 2.15
317 320 5.344566 ACAAATGATTCTTTCAATCCCCCT 58.655 37.500 0.00 0.00 38.03 4.79
318 321 5.682234 ACAAATGATTCTTTCAATCCCCC 57.318 39.130 0.00 0.00 38.03 5.40
323 326 7.546667 GCACCATGTACAAATGATTCTTTCAAT 59.453 33.333 0.00 0.00 38.03 2.57
325 328 6.389091 GCACCATGTACAAATGATTCTTTCA 58.611 36.000 0.00 0.00 39.12 2.69
334 337 2.295629 TGTGTGGCACCATGTACAAATG 59.704 45.455 16.26 0.00 32.73 2.32
335 338 2.591923 TGTGTGGCACCATGTACAAAT 58.408 42.857 16.26 0.00 32.73 2.32
347 350 0.033642 CAATGGTGCATTGTGTGGCA 59.966 50.000 0.00 0.00 44.12 4.92
348 351 2.830264 CAATGGTGCATTGTGTGGC 58.170 52.632 0.00 0.00 44.12 5.01
355 358 3.719924 CACAACAAGACAATGGTGCATT 58.280 40.909 0.00 0.00 41.84 3.56
356 359 3.374220 CACAACAAGACAATGGTGCAT 57.626 42.857 0.00 0.00 41.84 3.96
357 360 2.867287 CACAACAAGACAATGGTGCA 57.133 45.000 0.00 0.00 41.84 4.57
358 361 1.490621 GCACAACAAGACAATGGTGC 58.509 50.000 0.00 0.00 41.84 5.01
359 362 3.606846 CGTAGCACAACAAGACAATGGTG 60.607 47.826 0.00 0.00 43.75 4.17
360 363 2.548057 CGTAGCACAACAAGACAATGGT 59.452 45.455 0.00 0.00 0.00 3.55
361 364 2.548057 ACGTAGCACAACAAGACAATGG 59.452 45.455 0.00 0.00 0.00 3.16
362 365 3.878086 ACGTAGCACAACAAGACAATG 57.122 42.857 0.00 0.00 0.00 2.82
363 366 4.024893 CAGAACGTAGCACAACAAGACAAT 60.025 41.667 0.00 0.00 0.00 2.71
364 367 3.308595 CAGAACGTAGCACAACAAGACAA 59.691 43.478 0.00 0.00 0.00 3.18
365 368 2.863740 CAGAACGTAGCACAACAAGACA 59.136 45.455 0.00 0.00 0.00 3.41
366 369 2.348591 GCAGAACGTAGCACAACAAGAC 60.349 50.000 0.00 0.00 0.00 3.01
367 370 1.864711 GCAGAACGTAGCACAACAAGA 59.135 47.619 0.00 0.00 0.00 3.02
368 371 1.069906 GGCAGAACGTAGCACAACAAG 60.070 52.381 9.35 0.00 0.00 3.16
369 372 0.941542 GGCAGAACGTAGCACAACAA 59.058 50.000 9.35 0.00 0.00 2.83
370 373 0.179070 TGGCAGAACGTAGCACAACA 60.179 50.000 9.35 0.00 0.00 3.33
371 374 0.512952 CTGGCAGAACGTAGCACAAC 59.487 55.000 9.42 0.00 0.00 3.32
372 375 0.105964 ACTGGCAGAACGTAGCACAA 59.894 50.000 23.66 0.00 0.00 3.33
373 376 0.599991 CACTGGCAGAACGTAGCACA 60.600 55.000 23.66 4.84 0.00 4.57
374 377 1.291877 CCACTGGCAGAACGTAGCAC 61.292 60.000 23.66 1.07 0.00 4.40
375 378 1.005037 CCACTGGCAGAACGTAGCA 60.005 57.895 23.66 0.00 0.00 3.49
376 379 1.741770 CCCACTGGCAGAACGTAGC 60.742 63.158 23.66 0.00 0.00 3.58
377 380 4.598257 CCCACTGGCAGAACGTAG 57.402 61.111 23.66 3.39 0.00 3.51
394 397 2.555757 GCAAGTATGGATGGGAGAATGC 59.444 50.000 0.00 0.00 0.00 3.56
395 398 3.824133 TGCAAGTATGGATGGGAGAATG 58.176 45.455 0.00 0.00 0.00 2.67
396 399 4.736611 ATGCAAGTATGGATGGGAGAAT 57.263 40.909 0.00 0.00 36.11 2.40
404 407 2.135139 CGTACGCATGCAAGTATGGAT 58.865 47.619 19.57 0.00 38.25 3.41
405 408 1.566404 CGTACGCATGCAAGTATGGA 58.434 50.000 19.57 0.00 0.00 3.41
406 409 0.042188 GCGTACGCATGCAAGTATGG 60.042 55.000 33.90 9.76 41.49 2.74
407 410 3.420968 GCGTACGCATGCAAGTATG 57.579 52.632 33.90 17.60 41.49 2.39
429 432 7.284489 TGATGTTAGCCTGAGTTTACAGTTTTT 59.716 33.333 0.00 0.00 36.30 1.94
430 433 6.770785 TGATGTTAGCCTGAGTTTACAGTTTT 59.229 34.615 0.00 0.00 36.30 2.43
431 434 6.296026 TGATGTTAGCCTGAGTTTACAGTTT 58.704 36.000 0.00 0.00 36.30 2.66
432 435 5.865085 TGATGTTAGCCTGAGTTTACAGTT 58.135 37.500 0.00 0.00 36.30 3.16
433 436 5.483685 TGATGTTAGCCTGAGTTTACAGT 57.516 39.130 0.00 0.00 36.30 3.55
434 437 6.257411 CAGATGATGTTAGCCTGAGTTTACAG 59.743 42.308 0.00 0.00 37.61 2.74
435 438 6.108687 CAGATGATGTTAGCCTGAGTTTACA 58.891 40.000 0.00 0.00 0.00 2.41
436 439 6.109359 ACAGATGATGTTAGCCTGAGTTTAC 58.891 40.000 0.00 0.00 39.96 2.01
437 440 6.299805 ACAGATGATGTTAGCCTGAGTTTA 57.700 37.500 0.00 0.00 39.96 2.01
438 441 5.171339 ACAGATGATGTTAGCCTGAGTTT 57.829 39.130 0.00 0.00 39.96 2.66
439 442 4.833478 ACAGATGATGTTAGCCTGAGTT 57.167 40.909 0.00 0.00 39.96 3.01
440 443 6.491714 AATACAGATGATGTTAGCCTGAGT 57.508 37.500 0.00 0.00 39.96 3.41
491 494 9.321562 GGAATGATTGTTTGCAAGATAAATCAT 57.678 29.630 22.25 22.25 43.20 2.45
492 495 7.488792 CGGAATGATTGTTTGCAAGATAAATCA 59.511 33.333 20.65 20.65 38.10 2.57
493 496 7.701924 TCGGAATGATTGTTTGCAAGATAAATC 59.298 33.333 0.00 8.54 38.10 2.17
494 497 7.546358 TCGGAATGATTGTTTGCAAGATAAAT 58.454 30.769 0.00 0.00 38.10 1.40
495 498 6.918626 TCGGAATGATTGTTTGCAAGATAAA 58.081 32.000 0.00 0.00 38.10 1.40
496 499 6.507958 TCGGAATGATTGTTTGCAAGATAA 57.492 33.333 0.00 0.00 38.10 1.75
497 500 6.698008 ATCGGAATGATTGTTTGCAAGATA 57.302 33.333 0.00 0.00 38.10 1.98
498 501 5.587388 ATCGGAATGATTGTTTGCAAGAT 57.413 34.783 0.00 0.00 38.10 2.40
499 502 5.389859 AATCGGAATGATTGTTTGCAAGA 57.610 34.783 0.00 0.00 45.60 3.02
500 503 5.230726 GCTAATCGGAATGATTGTTTGCAAG 59.769 40.000 0.00 0.00 46.72 4.01
501 504 5.101628 GCTAATCGGAATGATTGTTTGCAA 58.898 37.500 0.00 0.00 46.72 4.08
502 505 4.157472 TGCTAATCGGAATGATTGTTTGCA 59.843 37.500 0.57 0.00 46.72 4.08
503 506 4.671377 TGCTAATCGGAATGATTGTTTGC 58.329 39.130 0.57 1.63 46.72 3.68
504 507 7.760131 AAATGCTAATCGGAATGATTGTTTG 57.240 32.000 0.57 0.00 46.72 2.93
505 508 7.818930 ACAAAATGCTAATCGGAATGATTGTTT 59.181 29.630 0.57 0.00 46.72 2.83
506 509 7.276218 CACAAAATGCTAATCGGAATGATTGTT 59.724 33.333 0.57 0.00 46.72 2.83
507 510 6.753279 CACAAAATGCTAATCGGAATGATTGT 59.247 34.615 0.57 0.00 46.72 2.71
508 511 6.753279 ACACAAAATGCTAATCGGAATGATTG 59.247 34.615 0.57 0.00 46.72 2.67
510 513 6.455360 ACACAAAATGCTAATCGGAATGAT 57.545 33.333 0.00 0.00 39.67 2.45
511 514 5.895636 ACACAAAATGCTAATCGGAATGA 57.104 34.783 0.00 0.00 0.00 2.57
512 515 6.092092 TCAACACAAAATGCTAATCGGAATG 58.908 36.000 0.00 0.00 0.00 2.67
513 516 6.266168 TCAACACAAAATGCTAATCGGAAT 57.734 33.333 0.00 0.00 0.00 3.01
514 517 5.697473 TCAACACAAAATGCTAATCGGAA 57.303 34.783 0.00 0.00 0.00 4.30
515 518 5.457140 GTTCAACACAAAATGCTAATCGGA 58.543 37.500 0.00 0.00 0.00 4.55
516 519 4.320690 CGTTCAACACAAAATGCTAATCGG 59.679 41.667 0.00 0.00 0.00 4.18
517 520 4.909305 ACGTTCAACACAAAATGCTAATCG 59.091 37.500 0.00 0.00 0.00 3.34
518 521 5.912396 TGACGTTCAACACAAAATGCTAATC 59.088 36.000 0.00 0.00 0.00 1.75
519 522 5.826586 TGACGTTCAACACAAAATGCTAAT 58.173 33.333 0.00 0.00 0.00 1.73
520 523 5.236655 TGACGTTCAACACAAAATGCTAA 57.763 34.783 0.00 0.00 0.00 3.09
521 524 4.260990 CCTGACGTTCAACACAAAATGCTA 60.261 41.667 0.00 0.00 0.00 3.49
522 525 3.489059 CCTGACGTTCAACACAAAATGCT 60.489 43.478 0.00 0.00 0.00 3.79
523 526 2.788786 CCTGACGTTCAACACAAAATGC 59.211 45.455 0.00 0.00 0.00 3.56
524 527 4.027572 ACCTGACGTTCAACACAAAATG 57.972 40.909 0.00 0.00 0.00 2.32
525 528 4.712122 AACCTGACGTTCAACACAAAAT 57.288 36.364 0.00 0.00 0.00 1.82
536 539 3.131396 GTGTTGAGATGAACCTGACGTT 58.869 45.455 0.00 0.00 37.41 3.99
537 540 2.755650 GTGTTGAGATGAACCTGACGT 58.244 47.619 0.00 0.00 0.00 4.34
538 541 1.721389 CGTGTTGAGATGAACCTGACG 59.279 52.381 0.00 0.00 0.00 4.35
539 542 2.069273 CCGTGTTGAGATGAACCTGAC 58.931 52.381 0.00 0.00 0.00 3.51
540 543 1.001974 CCCGTGTTGAGATGAACCTGA 59.998 52.381 0.00 0.00 0.00 3.86
541 544 1.270839 ACCCGTGTTGAGATGAACCTG 60.271 52.381 0.00 0.00 0.00 4.00
542 545 1.056660 ACCCGTGTTGAGATGAACCT 58.943 50.000 0.00 0.00 0.00 3.50
543 546 1.892209 AACCCGTGTTGAGATGAACC 58.108 50.000 0.00 0.00 32.13 3.62
544 547 2.875933 TGAAACCCGTGTTGAGATGAAC 59.124 45.455 0.00 0.00 34.13 3.18
545 548 3.201353 TGAAACCCGTGTTGAGATGAA 57.799 42.857 0.00 0.00 34.13 2.57
546 549 2.920724 TGAAACCCGTGTTGAGATGA 57.079 45.000 0.00 0.00 34.13 2.92
547 550 5.353956 TCATATTGAAACCCGTGTTGAGATG 59.646 40.000 0.00 0.00 34.13 2.90
548 551 5.496556 TCATATTGAAACCCGTGTTGAGAT 58.503 37.500 0.00 0.00 34.13 2.75
549 552 4.900684 TCATATTGAAACCCGTGTTGAGA 58.099 39.130 0.00 0.00 34.13 3.27
550 553 5.621197 TTCATATTGAAACCCGTGTTGAG 57.379 39.130 0.00 0.00 32.71 3.02
575 578 6.795098 TCGAACAAAACATAACAGTATGCT 57.205 33.333 0.00 0.00 42.53 3.79
576 579 7.845617 TTTCGAACAAAACATAACAGTATGC 57.154 32.000 0.00 0.00 42.53 3.14
593 596 9.052080 GCTTGATTCTGTTTTAGTATTTCGAAC 57.948 33.333 0.00 0.00 0.00 3.95
594 597 8.999431 AGCTTGATTCTGTTTTAGTATTTCGAA 58.001 29.630 0.00 0.00 0.00 3.71
595 598 8.547967 AGCTTGATTCTGTTTTAGTATTTCGA 57.452 30.769 0.00 0.00 0.00 3.71
596 599 8.443160 TGAGCTTGATTCTGTTTTAGTATTTCG 58.557 33.333 0.00 0.00 0.00 3.46
598 601 9.899226 GTTGAGCTTGATTCTGTTTTAGTATTT 57.101 29.630 0.00 0.00 0.00 1.40
599 602 9.066892 TGTTGAGCTTGATTCTGTTTTAGTATT 57.933 29.630 0.00 0.00 0.00 1.89
600 603 8.621532 TGTTGAGCTTGATTCTGTTTTAGTAT 57.378 30.769 0.00 0.00 0.00 2.12
601 604 8.342634 GTTGTTGAGCTTGATTCTGTTTTAGTA 58.657 33.333 0.00 0.00 0.00 1.82
602 605 6.942532 TGTTGAGCTTGATTCTGTTTTAGT 57.057 33.333 0.00 0.00 0.00 2.24
603 606 7.195646 TGTTGTTGAGCTTGATTCTGTTTTAG 58.804 34.615 0.00 0.00 0.00 1.85
604 607 7.094508 TGTTGTTGAGCTTGATTCTGTTTTA 57.905 32.000 0.00 0.00 0.00 1.52
605 608 5.964758 TGTTGTTGAGCTTGATTCTGTTTT 58.035 33.333 0.00 0.00 0.00 2.43
606 609 5.581126 TGTTGTTGAGCTTGATTCTGTTT 57.419 34.783 0.00 0.00 0.00 2.83
607 610 5.581126 TTGTTGTTGAGCTTGATTCTGTT 57.419 34.783 0.00 0.00 0.00 3.16
608 611 5.343249 GTTTGTTGTTGAGCTTGATTCTGT 58.657 37.500 0.00 0.00 0.00 3.41
609 612 4.741676 GGTTTGTTGTTGAGCTTGATTCTG 59.258 41.667 0.00 0.00 0.00 3.02
610 613 4.402155 TGGTTTGTTGTTGAGCTTGATTCT 59.598 37.500 0.00 0.00 0.00 2.40
611 614 4.681744 TGGTTTGTTGTTGAGCTTGATTC 58.318 39.130 0.00 0.00 0.00 2.52
612 615 4.734398 TGGTTTGTTGTTGAGCTTGATT 57.266 36.364 0.00 0.00 0.00 2.57
613 616 4.734398 TTGGTTTGTTGTTGAGCTTGAT 57.266 36.364 0.00 0.00 0.00 2.57
614 617 4.734398 ATTGGTTTGTTGTTGAGCTTGA 57.266 36.364 0.00 0.00 0.00 3.02
615 618 5.799681 AAATTGGTTTGTTGTTGAGCTTG 57.200 34.783 0.00 0.00 0.00 4.01
616 619 6.538381 CCTTAAATTGGTTTGTTGTTGAGCTT 59.462 34.615 0.00 0.00 0.00 3.74
617 620 6.048509 CCTTAAATTGGTTTGTTGTTGAGCT 58.951 36.000 0.00 0.00 0.00 4.09
618 621 6.019075 GTCCTTAAATTGGTTTGTTGTTGAGC 60.019 38.462 0.00 0.00 0.00 4.26
619 622 6.478673 GGTCCTTAAATTGGTTTGTTGTTGAG 59.521 38.462 0.00 0.00 0.00 3.02
620 623 6.155393 AGGTCCTTAAATTGGTTTGTTGTTGA 59.845 34.615 0.00 0.00 0.00 3.18
621 624 6.345298 AGGTCCTTAAATTGGTTTGTTGTTG 58.655 36.000 0.00 0.00 0.00 3.33
622 625 6.155393 TGAGGTCCTTAAATTGGTTTGTTGTT 59.845 34.615 0.00 0.00 0.00 2.83
623 626 5.659079 TGAGGTCCTTAAATTGGTTTGTTGT 59.341 36.000 0.00 0.00 0.00 3.32
624 627 6.155475 TGAGGTCCTTAAATTGGTTTGTTG 57.845 37.500 0.00 0.00 0.00 3.33
625 628 6.994421 ATGAGGTCCTTAAATTGGTTTGTT 57.006 33.333 0.00 0.00 0.00 2.83
626 629 7.947890 TCTTATGAGGTCCTTAAATTGGTTTGT 59.052 33.333 0.00 0.00 0.00 2.83
627 630 8.348285 TCTTATGAGGTCCTTAAATTGGTTTG 57.652 34.615 0.00 0.00 0.00 2.93
628 631 9.547279 AATCTTATGAGGTCCTTAAATTGGTTT 57.453 29.630 0.00 0.00 0.00 3.27
663 666 1.725931 GCCTCGCGTCAAACTCATTTG 60.726 52.381 5.77 0.00 45.67 2.32
664 667 0.517316 GCCTCGCGTCAAACTCATTT 59.483 50.000 5.77 0.00 0.00 2.32
665 668 0.602638 TGCCTCGCGTCAAACTCATT 60.603 50.000 5.77 0.00 0.00 2.57
666 669 1.005037 TGCCTCGCGTCAAACTCAT 60.005 52.632 5.77 0.00 0.00 2.90
667 670 1.954146 GTGCCTCGCGTCAAACTCA 60.954 57.895 5.77 0.00 0.00 3.41
668 671 2.853914 GTGCCTCGCGTCAAACTC 59.146 61.111 5.77 0.00 0.00 3.01
669 672 2.964438 TTCGTGCCTCGCGTCAAACT 62.964 55.000 5.77 0.00 38.57 2.66
670 673 2.096481 TTTCGTGCCTCGCGTCAAAC 62.096 55.000 5.77 0.03 38.57 2.93
671 674 1.827315 CTTTCGTGCCTCGCGTCAAA 61.827 55.000 5.77 0.00 38.57 2.69
672 675 2.279584 TTTCGTGCCTCGCGTCAA 60.280 55.556 5.77 0.00 38.57 3.18
673 676 2.733218 CTTTCGTGCCTCGCGTCA 60.733 61.111 5.77 0.00 38.57 4.35
674 677 3.479269 CCTTTCGTGCCTCGCGTC 61.479 66.667 5.77 0.00 38.57 5.19
675 678 3.986006 TCCTTTCGTGCCTCGCGT 61.986 61.111 5.77 0.00 38.57 6.01
676 679 3.479269 GTCCTTTCGTGCCTCGCG 61.479 66.667 0.00 0.00 39.67 5.87
677 680 2.048127 AGTCCTTTCGTGCCTCGC 60.048 61.111 0.00 0.00 39.67 5.03
678 681 1.738099 CCAGTCCTTTCGTGCCTCG 60.738 63.158 0.00 0.00 41.41 4.63
679 682 2.035442 GCCAGTCCTTTCGTGCCTC 61.035 63.158 0.00 0.00 0.00 4.70
680 683 2.032681 GCCAGTCCTTTCGTGCCT 59.967 61.111 0.00 0.00 0.00 4.75
681 684 1.675641 ATGCCAGTCCTTTCGTGCC 60.676 57.895 0.00 0.00 0.00 5.01
682 685 1.503542 CATGCCAGTCCTTTCGTGC 59.496 57.895 0.00 0.00 0.00 5.34
683 686 1.236616 TGCATGCCAGTCCTTTCGTG 61.237 55.000 16.68 0.00 0.00 4.35
684 687 0.322816 ATGCATGCCAGTCCTTTCGT 60.323 50.000 16.68 0.00 0.00 3.85
685 688 0.099968 CATGCATGCCAGTCCTTTCG 59.900 55.000 14.93 0.00 0.00 3.46
686 689 1.466856 TCATGCATGCCAGTCCTTTC 58.533 50.000 22.25 0.00 0.00 2.62
687 690 2.154567 ATCATGCATGCCAGTCCTTT 57.845 45.000 22.25 0.00 0.00 3.11
688 691 3.520691 ATATCATGCATGCCAGTCCTT 57.479 42.857 22.25 1.87 0.00 3.36
689 692 3.842436 TCTATATCATGCATGCCAGTCCT 59.158 43.478 22.25 4.66 0.00 3.85
690 693 4.190001 CTCTATATCATGCATGCCAGTCC 58.810 47.826 22.25 0.00 0.00 3.85
691 694 3.622163 GCTCTATATCATGCATGCCAGTC 59.378 47.826 22.25 8.28 0.00 3.51
692 695 3.263681 AGCTCTATATCATGCATGCCAGT 59.736 43.478 22.25 9.93 0.00 4.00
693 696 3.872182 GAGCTCTATATCATGCATGCCAG 59.128 47.826 22.25 14.45 0.00 4.85
694 697 3.677976 CGAGCTCTATATCATGCATGCCA 60.678 47.826 22.25 11.89 0.00 4.92
695 698 2.864946 CGAGCTCTATATCATGCATGCC 59.135 50.000 22.25 0.00 0.00 4.40
696 699 2.284684 GCGAGCTCTATATCATGCATGC 59.715 50.000 22.25 11.82 0.00 4.06
697 700 3.518590 TGCGAGCTCTATATCATGCATG 58.481 45.455 21.07 21.07 0.00 4.06
698 701 3.881937 TGCGAGCTCTATATCATGCAT 57.118 42.857 12.85 0.00 0.00 3.96
699 702 3.665745 TTGCGAGCTCTATATCATGCA 57.334 42.857 12.85 8.35 0.00 3.96
700 703 4.580855 CTTTGCGAGCTCTATATCATGC 57.419 45.455 12.85 5.58 0.00 4.06
728 731 3.725490 TGCTGATGCTGCTAGATAAGTG 58.275 45.455 0.00 0.00 40.48 3.16
733 736 3.171528 TCCTATGCTGATGCTGCTAGAT 58.828 45.455 0.00 0.00 40.48 1.98
734 737 2.601905 TCCTATGCTGATGCTGCTAGA 58.398 47.619 0.00 0.00 40.48 2.43
735 738 3.065655 GTTCCTATGCTGATGCTGCTAG 58.934 50.000 0.00 0.00 40.48 3.42
736 739 2.702478 AGTTCCTATGCTGATGCTGCTA 59.298 45.455 0.00 0.00 40.48 3.49
737 740 1.489649 AGTTCCTATGCTGATGCTGCT 59.510 47.619 0.00 0.00 40.48 4.24
738 741 1.872313 GAGTTCCTATGCTGATGCTGC 59.128 52.381 0.00 0.00 40.48 5.25
739 742 3.132160 CTGAGTTCCTATGCTGATGCTG 58.868 50.000 0.00 0.00 40.48 4.41
740 743 2.485124 GCTGAGTTCCTATGCTGATGCT 60.485 50.000 0.00 0.00 40.48 3.79
741 744 1.872313 GCTGAGTTCCTATGCTGATGC 59.128 52.381 0.00 0.00 40.20 3.91
742 745 3.472283 AGCTGAGTTCCTATGCTGATG 57.528 47.619 0.00 0.00 32.32 3.07
746 749 2.182827 TGACAGCTGAGTTCCTATGCT 58.817 47.619 23.35 0.00 0.00 3.79
747 750 2.680312 TGACAGCTGAGTTCCTATGC 57.320 50.000 23.35 0.00 0.00 3.14
748 751 4.940046 ACATTTGACAGCTGAGTTCCTATG 59.060 41.667 23.35 14.68 0.00 2.23
749 752 5.171339 ACATTTGACAGCTGAGTTCCTAT 57.829 39.130 23.35 0.00 0.00 2.57
750 753 4.623932 ACATTTGACAGCTGAGTTCCTA 57.376 40.909 23.35 0.00 0.00 2.94
754 916 4.820897 TCGATACATTTGACAGCTGAGTT 58.179 39.130 23.35 0.00 0.00 3.01
780 942 3.741476 CCTTTCAGCACGGGCAGC 61.741 66.667 14.57 0.00 44.61 5.25
803 966 0.667993 CGCCGGATGTATGCCATTTT 59.332 50.000 5.05 0.00 32.56 1.82
838 1001 2.046285 GCGGGGTGGAAGTGATTGG 61.046 63.158 0.00 0.00 0.00 3.16
854 1026 0.033504 AGTGCGTTATATGGGGAGCG 59.966 55.000 0.00 0.00 0.00 5.03
869 1041 1.058404 GAGGTCAACGACGTTAGTGC 58.942 55.000 13.77 3.94 32.65 4.40
894 1069 2.019897 GATGGGCGCAAATGGAAGGG 62.020 60.000 10.83 0.00 0.00 3.95
979 1166 1.153429 GCAACTACTCCGGCGGAAT 60.153 57.895 30.59 23.89 0.00 3.01
1007 1197 3.740397 CGAGTCGGTGCGGTGGTA 61.740 66.667 4.10 0.00 0.00 3.25
1126 1319 0.234884 GCAACAGTTCAGCACGTACC 59.765 55.000 0.00 0.00 0.00 3.34
1136 1329 4.009675 TCACCCATATTCAGCAACAGTTC 58.990 43.478 0.00 0.00 0.00 3.01
1137 1330 4.012374 CTCACCCATATTCAGCAACAGTT 58.988 43.478 0.00 0.00 0.00 3.16
1138 1331 3.009473 ACTCACCCATATTCAGCAACAGT 59.991 43.478 0.00 0.00 0.00 3.55
1139 1332 3.614092 ACTCACCCATATTCAGCAACAG 58.386 45.455 0.00 0.00 0.00 3.16
1140 1333 3.719268 ACTCACCCATATTCAGCAACA 57.281 42.857 0.00 0.00 0.00 3.33
1141 1334 4.009675 TCAACTCACCCATATTCAGCAAC 58.990 43.478 0.00 0.00 0.00 4.17
1142 1335 4.009675 GTCAACTCACCCATATTCAGCAA 58.990 43.478 0.00 0.00 0.00 3.91
1143 1336 3.008923 TGTCAACTCACCCATATTCAGCA 59.991 43.478 0.00 0.00 0.00 4.41
1144 1337 3.609853 TGTCAACTCACCCATATTCAGC 58.390 45.455 0.00 0.00 0.00 4.26
1145 1338 5.473162 TGTTTGTCAACTCACCCATATTCAG 59.527 40.000 0.00 0.00 33.58 3.02
1146 1339 5.240623 GTGTTTGTCAACTCACCCATATTCA 59.759 40.000 8.19 0.00 33.58 2.57
1147 1340 5.473504 AGTGTTTGTCAACTCACCCATATTC 59.526 40.000 13.27 0.00 33.58 1.75
1148 1341 5.385198 AGTGTTTGTCAACTCACCCATATT 58.615 37.500 13.27 0.00 33.58 1.28
1149 1342 4.985538 AGTGTTTGTCAACTCACCCATAT 58.014 39.130 13.27 0.00 33.58 1.78
1150 1343 4.431416 AGTGTTTGTCAACTCACCCATA 57.569 40.909 13.27 0.00 33.58 2.74
1151 1344 3.297134 AGTGTTTGTCAACTCACCCAT 57.703 42.857 13.27 0.00 33.58 4.00
1152 1345 2.799126 AGTGTTTGTCAACTCACCCA 57.201 45.000 13.27 0.00 33.58 4.51
1153 1346 2.548480 GCTAGTGTTTGTCAACTCACCC 59.452 50.000 13.27 3.51 33.58 4.61
1154 1347 3.248602 CAGCTAGTGTTTGTCAACTCACC 59.751 47.826 13.27 3.24 33.58 4.02
1155 1348 4.025647 GTCAGCTAGTGTTTGTCAACTCAC 60.026 45.833 10.39 10.39 33.58 3.51
1156 1349 4.119862 GTCAGCTAGTGTTTGTCAACTCA 58.880 43.478 0.00 0.00 33.58 3.41
1157 1350 3.182572 CGTCAGCTAGTGTTTGTCAACTC 59.817 47.826 0.00 0.00 33.58 3.01
1158 1351 3.123804 CGTCAGCTAGTGTTTGTCAACT 58.876 45.455 0.00 0.00 33.58 3.16
1159 1352 3.120792 TCGTCAGCTAGTGTTTGTCAAC 58.879 45.455 0.00 0.00 0.00 3.18
1160 1353 3.446310 TCGTCAGCTAGTGTTTGTCAA 57.554 42.857 0.00 0.00 0.00 3.18
1161 1354 3.120792 GTTCGTCAGCTAGTGTTTGTCA 58.879 45.455 0.00 0.00 0.00 3.58
1162 1355 2.153247 CGTTCGTCAGCTAGTGTTTGTC 59.847 50.000 0.00 0.00 0.00 3.18
1163 1356 2.124903 CGTTCGTCAGCTAGTGTTTGT 58.875 47.619 0.00 0.00 0.00 2.83
1164 1357 1.455786 CCGTTCGTCAGCTAGTGTTTG 59.544 52.381 0.00 0.00 0.00 2.93
1165 1358 1.779569 CCGTTCGTCAGCTAGTGTTT 58.220 50.000 0.00 0.00 0.00 2.83
1166 1359 0.666577 GCCGTTCGTCAGCTAGTGTT 60.667 55.000 0.00 0.00 0.00 3.32
1167 1360 1.080705 GCCGTTCGTCAGCTAGTGT 60.081 57.895 0.00 0.00 0.00 3.55
1168 1361 2.152699 CGCCGTTCGTCAGCTAGTG 61.153 63.158 0.00 0.00 0.00 2.74
1184 1377 0.320771 TTCAGTCTTGGGCTCTTCGC 60.321 55.000 0.00 0.00 38.13 4.70
1194 1387 2.679837 ACACAGCAACAGTTCAGTCTTG 59.320 45.455 0.00 0.00 0.00 3.02
1356 1559 2.278401 GGGTCGATGACGTACCGC 60.278 66.667 0.00 0.00 39.07 5.68
1365 1568 1.450312 GGGAAGTGCTGGGTCGATG 60.450 63.158 0.00 0.00 0.00 3.84
1496 1717 2.010582 GCAGCTCCGAGATCGACCTT 62.011 60.000 3.31 0.00 43.02 3.50
1646 1883 2.832129 ACGAGGAAGGCAAGATGTTCTA 59.168 45.455 0.00 0.00 0.00 2.10
1648 1885 2.003301 GACGAGGAAGGCAAGATGTTC 58.997 52.381 0.00 0.00 0.00 3.18
1650 1887 0.108615 CGACGAGGAAGGCAAGATGT 60.109 55.000 0.00 0.00 0.00 3.06
1666 1903 2.564553 ATCAGCAGAGGAACGCCGAC 62.565 60.000 0.00 0.00 39.96 4.79
1692 2002 2.419198 CCCTTCGATCCCGCAGAG 59.581 66.667 0.00 0.00 30.64 3.35
1859 2188 0.995728 GTAGACAAGCAGCTTCTCGC 59.004 55.000 4.07 0.00 39.57 5.03
1946 2276 4.737054 ACAGCGCCTAAATTGAATTGAAG 58.263 39.130 2.29 0.00 0.00 3.02
1999 2329 3.917985 GCGTCACGGCTATCAAAATTTTT 59.082 39.130 0.00 0.00 0.00 1.94
2000 2330 3.057876 TGCGTCACGGCTATCAAAATTTT 60.058 39.130 0.00 0.00 0.00 1.82
2001 2331 2.486203 TGCGTCACGGCTATCAAAATTT 59.514 40.909 0.00 0.00 0.00 1.82
2002 2332 2.080693 TGCGTCACGGCTATCAAAATT 58.919 42.857 0.00 0.00 0.00 1.82
2003 2333 1.732941 TGCGTCACGGCTATCAAAAT 58.267 45.000 0.00 0.00 0.00 1.82
2004 2334 1.396648 CATGCGTCACGGCTATCAAAA 59.603 47.619 0.00 0.00 0.00 2.44
2005 2335 1.006086 CATGCGTCACGGCTATCAAA 58.994 50.000 0.00 0.00 0.00 2.69
2006 2336 0.108377 ACATGCGTCACGGCTATCAA 60.108 50.000 0.00 0.00 0.00 2.57
2007 2337 0.805711 CACATGCGTCACGGCTATCA 60.806 55.000 0.00 0.00 0.00 2.15
2008 2338 0.806102 ACACATGCGTCACGGCTATC 60.806 55.000 0.00 0.00 0.00 2.08
2009 2339 0.806102 GACACATGCGTCACGGCTAT 60.806 55.000 8.99 0.00 35.88 2.97
2079 2409 1.008194 CATATGCATGGCCACACGC 60.008 57.895 8.16 12.69 36.11 5.34
2144 2780 3.744940 TGGGAAAGCAAGGAATGAGAT 57.255 42.857 0.00 0.00 0.00 2.75
2186 2845 8.184192 GCATTTCTTATACTAGTGCATTTGTGT 58.816 33.333 5.39 2.69 0.00 3.72
2210 2869 9.213777 CTCCCCCTGTTCTATAATATAATAGCA 57.786 37.037 0.00 0.00 30.79 3.49
2226 2972 5.694995 CAAATGATGTATACTCCCCCTGTT 58.305 41.667 4.17 0.00 0.00 3.16
2227 2973 4.446311 GCAAATGATGTATACTCCCCCTGT 60.446 45.833 4.17 0.00 0.00 4.00
2228 2974 4.074970 GCAAATGATGTATACTCCCCCTG 58.925 47.826 4.17 0.00 0.00 4.45
2229 2975 3.983410 AGCAAATGATGTATACTCCCCCT 59.017 43.478 4.17 0.00 0.00 4.79
2230 2976 4.074970 CAGCAAATGATGTATACTCCCCC 58.925 47.826 4.17 0.00 0.00 5.40
2239 3240 2.106477 TCCACGCAGCAAATGATGTA 57.894 45.000 0.24 0.00 33.30 2.29
2284 3285 0.873721 GTCCTCTACGTCCTATCGGC 59.126 60.000 0.00 0.00 34.94 5.54
2303 3304 4.101448 CCCTTGCCCCTCTCCGTG 62.101 72.222 0.00 0.00 0.00 4.94
2308 3309 2.845345 CCACAACCCTTGCCCCTCT 61.845 63.158 0.00 0.00 0.00 3.69
2309 3312 2.283173 CCACAACCCTTGCCCCTC 60.283 66.667 0.00 0.00 0.00 4.30
2441 3622 2.711009 TGTGGTTGGACCTTCATCTTCT 59.289 45.455 0.00 0.00 39.58 2.85
2461 3642 2.550830 AATAGGTTATCGCCCAGCTG 57.449 50.000 6.78 6.78 0.00 4.24
2465 3646 5.338056 GGATCATGTAATAGGTTATCGCCCA 60.338 44.000 0.00 0.00 0.00 5.36
2467 3648 5.978814 AGGATCATGTAATAGGTTATCGCC 58.021 41.667 0.00 0.00 0.00 5.54
2468 3649 5.744345 CGAGGATCATGTAATAGGTTATCGC 59.256 44.000 0.00 0.00 33.17 4.58
2484 3665 2.166459 CAGCTAGTTTGGACGAGGATCA 59.834 50.000 0.00 0.00 33.17 2.92
2492 3673 6.503524 TGAAAAACATTCAGCTAGTTTGGAC 58.496 36.000 6.55 3.72 35.79 4.02
2533 4794 1.556911 CCTATGACTCTGGGTGCAGTT 59.443 52.381 0.00 0.00 0.00 3.16
2534 4795 1.198713 CCTATGACTCTGGGTGCAGT 58.801 55.000 0.00 0.00 0.00 4.40
2543 4804 2.196925 CGGAGGCGCCTATGACTCT 61.197 63.158 32.97 4.00 0.00 3.24
2579 4841 7.284919 TCAAGCTATAAGATGAATCCGTACA 57.715 36.000 0.00 0.00 0.00 2.90
2580 4842 8.589335 TTTCAAGCTATAAGATGAATCCGTAC 57.411 34.615 0.00 0.00 32.35 3.67
2583 4845 7.953158 TCTTTCAAGCTATAAGATGAATCCG 57.047 36.000 0.00 0.00 32.35 4.18
2667 5089 6.714810 TGTATGTCATCCTATGGGTTATTTGC 59.285 38.462 0.00 0.00 0.00 3.68
2673 5095 4.473196 TGTGTGTATGTCATCCTATGGGTT 59.527 41.667 0.00 0.00 0.00 4.11
2682 5104 3.262420 GGGAGTGTGTGTGTATGTCATC 58.738 50.000 0.00 0.00 0.00 2.92
2686 5108 2.037251 GACTGGGAGTGTGTGTGTATGT 59.963 50.000 0.00 0.00 0.00 2.29
2687 5109 2.688507 GACTGGGAGTGTGTGTGTATG 58.311 52.381 0.00 0.00 0.00 2.39
2688 5110 1.272490 CGACTGGGAGTGTGTGTGTAT 59.728 52.381 0.00 0.00 0.00 2.29
2689 5111 0.671796 CGACTGGGAGTGTGTGTGTA 59.328 55.000 0.00 0.00 0.00 2.90
2690 5112 1.040893 TCGACTGGGAGTGTGTGTGT 61.041 55.000 0.00 0.00 0.00 3.72
2691 5113 0.104120 TTCGACTGGGAGTGTGTGTG 59.896 55.000 0.00 0.00 0.00 3.82
2705 5127 6.070829 GCAAAATTTAAGGTGCATTTTCGAC 58.929 36.000 7.53 0.00 36.97 4.20
2707 5129 5.983475 TGCAAAATTTAAGGTGCATTTTCG 58.017 33.333 10.48 0.00 41.85 3.46
2727 5149 2.356741 GGAACTGGCTAGGGTTAATGCA 60.357 50.000 0.85 0.00 0.00 3.96
2732 5154 6.397217 AATTTAAGGAACTGGCTAGGGTTA 57.603 37.500 0.85 0.00 40.86 2.85
2759 5187 6.483307 CACACACCAAGAGAAGTGAAATTCTA 59.517 38.462 0.00 0.00 39.63 2.10
2782 5210 1.456296 TGCATCTCTGATTGGTGCAC 58.544 50.000 8.80 8.80 40.51 4.57
2827 5255 4.310769 TGCACCCACCAAAATAAAAATCG 58.689 39.130 0.00 0.00 0.00 3.34
2912 5888 0.409092 CCATTATGCATAGGCCCCCA 59.591 55.000 6.50 0.00 40.13 4.96
2918 5894 7.884877 TCCTAGAATTGTTCCATTATGCATAGG 59.115 37.037 6.50 6.10 0.00 2.57
2963 5940 4.677250 GCTTAGGCATGTAGTCGTGTAGTT 60.677 45.833 0.00 0.00 38.54 2.24
2993 5970 0.251341 GACAAGGCACTCCACCCAAT 60.251 55.000 0.00 0.00 38.49 3.16
3043 6020 2.291800 ACAATAATGCAGAAGCTGGGGT 60.292 45.455 0.00 0.00 42.74 4.95
3047 6024 4.042398 GCATCACAATAATGCAGAAGCTG 58.958 43.478 3.35 0.00 46.93 4.24
3048 6025 4.303086 GCATCACAATAATGCAGAAGCT 57.697 40.909 3.35 0.00 46.93 3.74
3152 6129 4.661222 TCAAAATGACCTCCTGCAATGTA 58.339 39.130 0.00 0.00 0.00 2.29
3242 6222 4.479056 TCTCTCTAGTCTTCACCTACCCAT 59.521 45.833 0.00 0.00 0.00 4.00
3251 6231 6.348498 CACATCTCTCTCTCTCTAGTCTTCA 58.652 44.000 0.00 0.00 0.00 3.02
3262 6242 1.113788 AGCCAGCACATCTCTCTCTC 58.886 55.000 0.00 0.00 0.00 3.20
3263 6243 1.207570 CAAGCCAGCACATCTCTCTCT 59.792 52.381 0.00 0.00 0.00 3.10
3276 6256 1.928868 AAATCACCTTCCCAAGCCAG 58.071 50.000 0.00 0.00 0.00 4.85
3310 6290 7.786943 TCTTCTACTTCCTCATTCCATACATCT 59.213 37.037 0.00 0.00 0.00 2.90
3468 6450 6.573485 ATGTGTGCATGATTGACAATGAATGT 60.573 34.615 5.14 0.00 38.37 2.71
3603 6586 7.081976 GGTGTCTAACAATTTCAATACCACAC 58.918 38.462 0.00 0.00 0.00 3.82
3635 6618 1.654954 TTCCAGTCTAGCTCGACGCC 61.655 60.000 12.28 0.00 40.39 5.68
3639 6622 2.881513 CTGCTATTCCAGTCTAGCTCGA 59.118 50.000 0.00 0.00 40.78 4.04
3814 6797 3.006940 GACACCATTGCATTCGTCCTTA 58.993 45.455 0.00 0.00 0.00 2.69
3928 6914 7.617723 ACTGCATTAATAATTCAACTTGGGGTA 59.382 33.333 0.00 0.00 0.00 3.69
3998 6984 5.759273 CCAAAGCCAAAAACATCTGATTTCA 59.241 36.000 0.00 0.00 0.00 2.69
4133 7119 9.578576 AAGCATTTTAGCAGATTATTCTATGGA 57.421 29.630 0.00 0.00 36.85 3.41
4185 7171 1.559682 TCCAGAACTTCCATGCCTACC 59.440 52.381 0.00 0.00 0.00 3.18
4187 7173 3.523157 TCAATCCAGAACTTCCATGCCTA 59.477 43.478 0.00 0.00 0.00 3.93
4324 7311 1.895131 AGGACATTTGACATGGTTGGC 59.105 47.619 0.00 0.00 0.00 4.52
4369 7356 2.269520 TAGATGGTGCGGGCATGCTT 62.270 55.000 18.92 0.00 35.36 3.91
4373 7360 2.831770 CCTAGATGGTGCGGGCAT 59.168 61.111 0.00 0.00 0.00 4.40
4456 7443 3.046390 CGAGGCATAGTTGATCGACTTC 58.954 50.000 20.75 10.73 36.34 3.01
4520 7507 8.556194 GTCAACTCTTAACAAATGTGTACATGA 58.444 33.333 0.00 0.00 36.80 3.07
4529 7516 8.621286 ACTAACCAAGTCAACTCTTAACAAATG 58.379 33.333 0.00 0.00 30.33 2.32
4602 7590 4.930963 TGGAGTTGTTTACATTTGCACTG 58.069 39.130 0.00 0.00 0.00 3.66
4699 7688 7.195839 TGTCGACACATTTGATTCATGTTTA 57.804 32.000 15.76 0.00 32.25 2.01
4774 7764 5.560966 AAGTTCACGTGTTTTCTCAATGT 57.439 34.783 16.51 0.00 0.00 2.71
4807 7797 7.336679 CAGGGTAAATTCATGTCTGTGATACAA 59.663 37.037 0.00 0.00 0.00 2.41
4821 7811 1.005450 GGGACAGGCAGGGTAAATTCA 59.995 52.381 0.00 0.00 0.00 2.57
4837 7827 1.967779 GATCTAGAGAAGCCCAGGGAC 59.032 57.143 10.89 0.00 0.00 4.46
4879 7869 1.178534 TAGTGGTTTTGGCCAGCAGC 61.179 55.000 5.11 7.04 39.53 5.25
4880 7870 0.883833 CTAGTGGTTTTGGCCAGCAG 59.116 55.000 5.11 0.00 39.53 4.24
4882 7872 1.839424 ATCTAGTGGTTTTGGCCAGC 58.161 50.000 5.11 0.00 39.53 4.85
4883 7873 3.157087 ACAATCTAGTGGTTTTGGCCAG 58.843 45.455 5.11 0.00 39.53 4.85
4919 7909 6.824305 AACGAGAAAGGAATTGTCATTGAT 57.176 33.333 0.00 0.00 30.88 2.57
4924 7914 3.818773 GGGAAACGAGAAAGGAATTGTCA 59.181 43.478 0.00 0.00 30.88 3.58
4942 7932 2.940994 TGAACCACATTCGAAGGGAA 57.059 45.000 15.04 0.53 40.56 3.97
4943 7933 2.940994 TTGAACCACATTCGAAGGGA 57.059 45.000 15.04 0.00 40.56 4.20
4962 7952 8.760980 AGTACTATCTAGAGCAGATGAAGTTT 57.239 34.615 10.36 0.00 44.10 2.66
4971 7961 5.174037 AGGGCTAGTACTATCTAGAGCAG 57.826 47.826 13.58 0.41 39.57 4.24
4981 7971 5.072741 CAATTACCGGTAGGGCTAGTACTA 58.927 45.833 15.20 1.89 43.47 1.82
4985 7975 1.415289 GCAATTACCGGTAGGGCTAGT 59.585 52.381 15.20 0.00 43.47 2.57
4997 7987 7.996385 AGAAAACTATATGGTGTGCAATTACC 58.004 34.615 8.66 8.66 37.48 2.85
5106 8096 7.224753 ACGACAAGTATGATATTCATGAACACC 59.775 37.037 11.07 3.19 37.70 4.16
5204 8194 2.402564 GGATGGATGAGGAGTTGAGGA 58.597 52.381 0.00 0.00 0.00 3.71
5327 8317 1.005867 CCATGCCAAAGTGCACCAC 60.006 57.895 14.63 0.00 45.48 4.16
5423 8433 5.505181 AGCCTCTTCATTTAAGACCAAGA 57.495 39.130 0.00 0.00 39.36 3.02
5468 8478 0.881118 CCACCATCCAAAACAGTCGG 59.119 55.000 0.00 0.00 0.00 4.79
5472 8482 1.340889 CCACACCACCATCCAAAACAG 59.659 52.381 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.