Multiple sequence alignment - TraesCS7D01G230200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G230200 chr7D 100.000 4128 0 0 1 4128 191494889 191490762 0.000000e+00 7624.0
1 TraesCS7D01G230200 chr7D 91.480 223 19 0 1542 1764 191557850 191557628 1.440000e-79 307.0
2 TraesCS7D01G230200 chr7D 78.613 346 46 17 1077 1401 191558283 191557945 1.950000e-48 204.0
3 TraesCS7D01G230200 chr7A 91.188 3711 153 81 1 3572 200034325 200030650 0.000000e+00 4881.0
4 TraesCS7D01G230200 chr7A 92.222 270 18 2 3625 3891 200030649 200030380 3.010000e-101 379.0
5 TraesCS7D01G230200 chr7A 93.636 220 14 0 1542 1761 200064997 200064778 3.080000e-86 329.0
6 TraesCS7D01G230200 chr7A 91.949 236 15 2 3894 4128 42533173 42532941 1.110000e-85 327.0
7 TraesCS7D01G230200 chr7A 90.417 240 18 4 3891 4128 115335315 115335551 1.110000e-80 311.0
8 TraesCS7D01G230200 chr7A 90.254 236 18 3 3894 4128 183650958 183650727 1.860000e-78 303.0
9 TraesCS7D01G230200 chr7A 79.167 336 50 14 1077 1401 200065418 200065092 8.990000e-52 215.0
10 TraesCS7D01G230200 chr7B 90.722 3697 147 69 1 3576 336649086 336645465 0.000000e+00 4747.0
11 TraesCS7D01G230200 chr7B 92.941 255 15 2 3627 3878 336645466 336645212 6.520000e-98 368.0
12 TraesCS7D01G230200 chr7B 90.950 221 20 0 1542 1762 336718602 336718382 8.680000e-77 298.0
13 TraesCS7D01G230200 chr7B 79.532 342 46 13 1077 1401 336719035 336718701 5.370000e-54 222.0
14 TraesCS7D01G230200 chr6A 78.261 805 131 33 2233 3014 503426841 503427624 1.040000e-130 477.0
15 TraesCS7D01G230200 chr6A 90.830 229 19 2 1543 1770 503426201 503426428 5.180000e-79 305.0
16 TraesCS7D01G230200 chr6A 89.831 236 19 3 3894 4127 75951698 75951930 8.680000e-77 298.0
17 TraesCS7D01G230200 chr6D 78.117 818 129 38 2233 3014 362988622 362989425 1.340000e-129 473.0
18 TraesCS7D01G230200 chr6D 91.266 229 18 2 1543 1770 362987940 362988167 1.110000e-80 311.0
19 TraesCS7D01G230200 chr6B 78.052 770 122 36 2233 2977 544404573 544405320 3.790000e-120 442.0
20 TraesCS7D01G230200 chr6B 90.308 227 20 2 1543 1768 544403588 544403813 3.120000e-76 296.0
21 TraesCS7D01G230200 chr2D 90.871 241 16 4 3890 4128 324907424 324907188 6.660000e-83 318.0
22 TraesCS7D01G230200 chr2D 82.222 135 20 4 2287 2419 188838215 188838347 3.370000e-21 113.0
23 TraesCS7D01G230200 chr3D 90.795 239 17 3 3892 4128 535909888 535910123 8.610000e-82 315.0
24 TraesCS7D01G230200 chr3D 90.295 237 17 4 3894 4128 250941122 250940890 5.180000e-79 305.0
25 TraesCS7D01G230200 chr1A 91.228 228 15 3 3902 4128 558892752 558892975 5.180000e-79 305.0
26 TraesCS7D01G230200 chr1A 91.228 228 15 3 3903 4128 558941372 558941596 5.180000e-79 305.0
27 TraesCS7D01G230200 chr5B 86.614 127 17 0 2293 2419 532892218 532892092 1.550000e-29 141.0
28 TraesCS7D01G230200 chr5B 86.667 60 8 0 1336 1395 504833468 504833409 2.660000e-07 67.6
29 TraesCS7D01G230200 chr2A 73.497 366 75 20 2287 2643 202890561 202890913 7.250000e-23 119.0
30 TraesCS7D01G230200 chr2A 83.117 77 11 2 2553 2628 203315597 203315672 7.400000e-08 69.4
31 TraesCS7D01G230200 chr2B 80.741 135 22 4 2287 2419 244936589 244936721 7.300000e-18 102.0
32 TraesCS7D01G230200 chrUn 90.411 73 7 0 1613 1685 314646183 314646255 3.400000e-16 97.1
33 TraesCS7D01G230200 chr5A 84.211 57 9 0 1339 1395 531083364 531083308 5.760000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G230200 chr7D 191490762 191494889 4127 True 7624.0 7624 100.0000 1 4128 1 chr7D.!!$R1 4127
1 TraesCS7D01G230200 chr7D 191557628 191558283 655 True 255.5 307 85.0465 1077 1764 2 chr7D.!!$R2 687
2 TraesCS7D01G230200 chr7A 200030380 200034325 3945 True 2630.0 4881 91.7050 1 3891 2 chr7A.!!$R3 3890
3 TraesCS7D01G230200 chr7A 200064778 200065418 640 True 272.0 329 86.4015 1077 1761 2 chr7A.!!$R4 684
4 TraesCS7D01G230200 chr7B 336645212 336649086 3874 True 2557.5 4747 91.8315 1 3878 2 chr7B.!!$R1 3877
5 TraesCS7D01G230200 chr7B 336718382 336719035 653 True 260.0 298 85.2410 1077 1762 2 chr7B.!!$R2 685
6 TraesCS7D01G230200 chr6A 503426201 503427624 1423 False 391.0 477 84.5455 1543 3014 2 chr6A.!!$F2 1471
7 TraesCS7D01G230200 chr6D 362987940 362989425 1485 False 392.0 473 84.6915 1543 3014 2 chr6D.!!$F1 1471
8 TraesCS7D01G230200 chr6B 544403588 544405320 1732 False 369.0 442 84.1800 1543 2977 2 chr6B.!!$F1 1434

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
182 186 0.895530 ACACCCATCAGTAGACACCG 59.104 55.0 0.00 0.00 0.00 4.94 F
1227 1272 0.111639 TTCTTGGTTACCACTGGGGC 59.888 55.0 2.39 0.00 42.05 5.80 F
1234 1279 0.400213 TTACCACTGGGGCTGAAGTG 59.600 55.0 0.00 7.49 42.83 3.16 F
1877 2469 0.804544 TCGCGCCATTAAGTTCCGAG 60.805 55.0 0.00 0.00 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1877 2469 0.815095 CCCCCATTAACCAAACGAGC 59.185 55.0 0.00 0.00 0.00 5.03 R
2222 2869 0.299895 CGCTCTTGCTTGCATCTACG 59.700 55.0 0.00 0.00 36.97 3.51 R
2600 3284 0.597637 AGCTGAACACGTCCGACTTG 60.598 55.0 3.56 3.56 0.00 3.16 R
3620 4353 0.601311 GCTCGCTCTGGTCACTGTTT 60.601 55.0 0.00 0.00 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.084546 CCCAAGATCAAAGACCGGTTC 58.915 52.381 9.42 0.00 0.00 3.62
71 75 6.146837 CACTCTGTGTCTCTAAAAGTGGATTG 59.853 42.308 0.00 0.00 31.33 2.67
147 151 8.345565 ACTTTGTCAATCTTGAACATCTGTAAC 58.654 33.333 0.00 0.00 39.21 2.50
168 172 1.550524 TGCAGTCATCAGTAGACACCC 59.449 52.381 0.00 0.00 38.46 4.61
169 173 1.550524 GCAGTCATCAGTAGACACCCA 59.449 52.381 0.00 0.00 38.46 4.51
170 174 2.169352 GCAGTCATCAGTAGACACCCAT 59.831 50.000 0.00 0.00 38.46 4.00
171 175 3.739519 GCAGTCATCAGTAGACACCCATC 60.740 52.174 0.00 0.00 38.46 3.51
172 176 3.448660 CAGTCATCAGTAGACACCCATCA 59.551 47.826 0.00 0.00 38.46 3.07
173 177 3.703556 AGTCATCAGTAGACACCCATCAG 59.296 47.826 0.00 0.00 38.46 2.90
174 178 3.449018 GTCATCAGTAGACACCCATCAGT 59.551 47.826 0.00 0.00 36.06 3.41
175 179 4.645136 GTCATCAGTAGACACCCATCAGTA 59.355 45.833 0.00 0.00 36.06 2.74
176 180 4.889995 TCATCAGTAGACACCCATCAGTAG 59.110 45.833 0.00 0.00 0.00 2.57
177 181 4.586306 TCAGTAGACACCCATCAGTAGA 57.414 45.455 0.00 0.00 0.00 2.59
178 182 4.270834 TCAGTAGACACCCATCAGTAGAC 58.729 47.826 0.00 0.00 0.00 2.59
179 183 4.017126 CAGTAGACACCCATCAGTAGACA 58.983 47.826 0.00 0.00 0.00 3.41
180 184 4.017808 AGTAGACACCCATCAGTAGACAC 58.982 47.826 0.00 0.00 0.00 3.67
181 185 2.180276 AGACACCCATCAGTAGACACC 58.820 52.381 0.00 0.00 0.00 4.16
182 186 0.895530 ACACCCATCAGTAGACACCG 59.104 55.000 0.00 0.00 0.00 4.94
183 187 0.895530 CACCCATCAGTAGACACCGT 59.104 55.000 0.00 0.00 0.00 4.83
184 188 0.895530 ACCCATCAGTAGACACCGTG 59.104 55.000 0.00 0.00 0.00 4.94
329 333 2.493278 CCATTCGAAGCAATGTCCCTTT 59.507 45.455 3.35 0.00 32.61 3.11
337 343 6.030228 CGAAGCAATGTCCCTTTAAGAATTC 58.970 40.000 0.00 0.00 0.00 2.17
350 356 7.231519 CCCTTTAAGAATTCTTTTGAGAGGTGT 59.768 37.037 25.02 0.00 37.40 4.16
389 395 5.703978 TGGTAACTGTGGAATTTGTGATG 57.296 39.130 0.00 0.00 37.61 3.07
425 431 4.065789 GCATGGTGGAGTAGTAAATAGCC 58.934 47.826 0.00 0.00 0.00 3.93
435 441 7.175641 TGGAGTAGTAAATAGCCGGATACTTAC 59.824 40.741 20.33 20.33 31.46 2.34
436 442 7.392953 GGAGTAGTAAATAGCCGGATACTTACT 59.607 40.741 29.59 29.59 35.20 2.24
504 510 2.375174 TCAGTGGCTTAATTGGGACAGT 59.625 45.455 0.00 0.00 42.39 3.55
519 525 8.783660 ATTGGGACAGTTAGACTAATCTATCA 57.216 34.615 0.00 0.00 42.39 2.15
546 553 3.263369 TGACTGGTTCTACCCCACTTA 57.737 47.619 0.00 0.00 37.50 2.24
547 554 2.901839 TGACTGGTTCTACCCCACTTAC 59.098 50.000 0.00 0.00 37.50 2.34
634 647 7.037153 ACCTCATCCTATGGTTTTTACCTTGTA 60.037 37.037 0.00 0.00 0.00 2.41
823 843 3.428532 ACTAGTAGAACCTTTCAGCCGA 58.571 45.455 3.59 0.00 0.00 5.54
890 913 2.588464 TCTCACGTCTTTCTCCTCCT 57.412 50.000 0.00 0.00 0.00 3.69
1089 1118 4.021104 CAGGAGGCGATGAAGATAATGGTA 60.021 45.833 0.00 0.00 0.00 3.25
1188 1218 1.379977 ATCCTCCGCCGTCTCTGAA 60.380 57.895 0.00 0.00 0.00 3.02
1189 1219 1.388065 ATCCTCCGCCGTCTCTGAAG 61.388 60.000 0.00 0.00 0.00 3.02
1190 1220 2.344203 CCTCCGCCGTCTCTGAAGT 61.344 63.158 0.00 0.00 0.00 3.01
1219 1258 2.229062 GGCTTGCTTCTTCTTGGTTACC 59.771 50.000 0.00 0.00 0.00 2.85
1226 1271 1.702957 TCTTCTTGGTTACCACTGGGG 59.297 52.381 2.39 0.00 44.81 4.96
1227 1272 0.111639 TTCTTGGTTACCACTGGGGC 59.888 55.000 2.39 0.00 42.05 5.80
1234 1279 0.400213 TTACCACTGGGGCTGAAGTG 59.600 55.000 0.00 7.49 42.83 3.16
1242 1287 1.304381 GGGCTGAAGTGGGAATGCA 60.304 57.895 0.00 0.00 0.00 3.96
1405 1475 1.743958 CCCTGTCTACAGAGTACGTGG 59.256 57.143 11.69 0.00 46.59 4.94
1413 1493 6.710295 TGTCTACAGAGTACGTGGTTTACTTA 59.290 38.462 0.00 0.00 29.58 2.24
1414 1494 7.228507 TGTCTACAGAGTACGTGGTTTACTTAA 59.771 37.037 0.00 0.00 29.58 1.85
1415 1495 8.239998 GTCTACAGAGTACGTGGTTTACTTAAT 58.760 37.037 0.00 0.00 29.58 1.40
1417 1497 9.713740 CTACAGAGTACGTGGTTTACTTAATAG 57.286 37.037 0.00 0.00 29.58 1.73
1419 1499 8.579863 ACAGAGTACGTGGTTTACTTAATAGTT 58.420 33.333 0.00 0.00 35.78 2.24
1457 1577 5.562635 TCTCTATTAGCTAGTCCCTAGTGC 58.437 45.833 0.00 0.00 36.53 4.40
1461 1581 1.770294 AGCTAGTCCCTAGTGCACTC 58.230 55.000 25.56 8.69 36.53 3.51
1479 1599 4.991056 GCACTCAACATTTGTGTAGAGAGA 59.009 41.667 12.28 0.00 35.79 3.10
1770 1903 3.072468 CGGTGCGTCCCTTCCCTA 61.072 66.667 0.00 0.00 0.00 3.53
1830 2315 2.351455 GAAAGAAAAGAGCTCGAGGGG 58.649 52.381 15.58 0.00 0.00 4.79
1875 2467 1.347221 GTCGCGCCATTAAGTTCCG 59.653 57.895 0.00 0.00 0.00 4.30
1876 2468 1.079875 GTCGCGCCATTAAGTTCCGA 61.080 55.000 0.00 0.00 0.00 4.55
1877 2469 0.804544 TCGCGCCATTAAGTTCCGAG 60.805 55.000 0.00 0.00 0.00 4.63
1915 2507 4.393155 CAGCCGGTGCAGTGCCTA 62.393 66.667 13.72 0.00 41.13 3.93
1916 2508 4.087892 AGCCGGTGCAGTGCCTAG 62.088 66.667 13.72 3.16 41.13 3.02
1974 2567 6.782298 ATCGAGCAATCTGTCATTGATTAG 57.218 37.500 0.00 0.00 33.38 1.73
2078 2715 3.444916 CACGCCACATGGTACTAACTAG 58.555 50.000 0.00 0.00 37.57 2.57
2086 2723 2.190538 TGGTACTAACTAGGCCCCAAC 58.809 52.381 0.00 0.00 0.00 3.77
2141 2778 5.667539 TTAGTTGCTGCTAGTGATCTCTT 57.332 39.130 2.05 0.00 0.00 2.85
2191 2829 1.967066 GGTCGATCCCTGATCACTCAT 59.033 52.381 0.00 0.00 38.84 2.90
2192 2830 2.029470 GGTCGATCCCTGATCACTCATC 60.029 54.545 0.00 0.00 38.84 2.92
2193 2831 2.625314 GTCGATCCCTGATCACTCATCA 59.375 50.000 0.00 0.00 38.84 3.07
2539 3223 2.280628 CTTACTCACCTGAATTCGGGC 58.719 52.381 29.82 0.00 46.43 6.13
2600 3284 2.126031 GAGGGCGTGTTCTCGGTC 60.126 66.667 0.00 0.00 0.00 4.79
2713 3397 2.033049 CCCTCATCCAAGACGTACGTAG 59.967 54.545 22.87 13.96 0.00 3.51
2715 3399 3.873361 CCTCATCCAAGACGTACGTAGTA 59.127 47.826 22.87 5.89 45.11 1.82
2766 3482 6.982852 TCACTAGCATTATCTACTGGTAAGC 58.017 40.000 0.00 0.00 0.00 3.09
2902 3618 4.308458 CGGTGCTTCCACGTGGGA 62.308 66.667 33.40 25.77 46.61 4.37
3334 4053 8.696410 TTTTTCCCGTTGATTAATTTCTATGC 57.304 30.769 0.00 0.00 0.00 3.14
3335 4054 7.397892 TTTCCCGTTGATTAATTTCTATGCA 57.602 32.000 0.00 0.00 0.00 3.96
3336 4055 6.371809 TCCCGTTGATTAATTTCTATGCAC 57.628 37.500 0.00 0.00 0.00 4.57
3338 4057 6.375736 TCCCGTTGATTAATTTCTATGCACAA 59.624 34.615 0.00 0.00 0.00 3.33
3340 4059 7.220683 CCCGTTGATTAATTTCTATGCACAAAG 59.779 37.037 0.00 0.00 0.00 2.77
3341 4060 7.253750 CCGTTGATTAATTTCTATGCACAAAGC 60.254 37.037 0.00 0.00 45.96 3.51
3342 4061 7.485913 CGTTGATTAATTTCTATGCACAAAGCT 59.514 33.333 0.00 0.00 45.94 3.74
3343 4062 9.143631 GTTGATTAATTTCTATGCACAAAGCTT 57.856 29.630 0.00 0.00 45.94 3.74
3344 4063 8.915871 TGATTAATTTCTATGCACAAAGCTTC 57.084 30.769 0.00 0.00 45.94 3.86
3345 4064 7.697710 TGATTAATTTCTATGCACAAAGCTTCG 59.302 33.333 0.00 0.00 45.94 3.79
3346 4065 5.376854 AATTTCTATGCACAAAGCTTCGT 57.623 34.783 0.00 0.00 45.94 3.85
3403 4135 3.719173 TTTTCCGTGACAATTTGGGTC 57.281 42.857 0.78 0.00 35.83 4.46
3404 4136 2.350057 TTCCGTGACAATTTGGGTCA 57.650 45.000 0.78 0.00 42.62 4.02
3460 4193 3.797039 CTTCAGAAAGTGGAGTGTGACA 58.203 45.455 0.00 0.00 0.00 3.58
3504 4237 0.668535 AAGGTCCGCTGAACTTTTGC 59.331 50.000 2.11 0.00 46.48 3.68
3519 4252 0.033228 TTTGCCTTGGCAATTGACCG 59.967 50.000 25.17 0.00 0.00 4.79
3520 4253 1.814772 TTGCCTTGGCAATTGACCGG 61.815 55.000 21.59 10.55 0.00 5.28
3523 4256 1.595093 CCTTGGCAATTGACCGGACC 61.595 60.000 9.46 0.00 0.00 4.46
3544 4277 0.535797 GGAAGGAGGAACGACCGAAT 59.464 55.000 0.00 0.00 44.74 3.34
3572 4305 2.514803 CCCATTTCTTTCACCCTCGTT 58.485 47.619 0.00 0.00 0.00 3.85
3573 4306 3.560453 CCCCATTTCTTTCACCCTCGTTA 60.560 47.826 0.00 0.00 0.00 3.18
3574 4307 4.270008 CCCATTTCTTTCACCCTCGTTAT 58.730 43.478 0.00 0.00 0.00 1.89
3575 4308 4.096382 CCCATTTCTTTCACCCTCGTTATG 59.904 45.833 0.00 0.00 0.00 1.90
3576 4309 4.700213 CCATTTCTTTCACCCTCGTTATGT 59.300 41.667 0.00 0.00 0.00 2.29
3577 4310 5.163754 CCATTTCTTTCACCCTCGTTATGTC 60.164 44.000 0.00 0.00 0.00 3.06
3578 4311 3.226346 TCTTTCACCCTCGTTATGTCG 57.774 47.619 0.00 0.00 0.00 4.35
3579 4312 1.659098 CTTTCACCCTCGTTATGTCGC 59.341 52.381 0.00 0.00 0.00 5.19
3580 4313 0.457166 TTCACCCTCGTTATGTCGCG 60.457 55.000 0.00 0.00 0.00 5.87
3581 4314 1.153901 CACCCTCGTTATGTCGCGT 60.154 57.895 5.77 0.00 0.00 6.01
3582 4315 1.138047 CACCCTCGTTATGTCGCGTC 61.138 60.000 5.77 0.00 0.00 5.19
3583 4316 1.138036 CCCTCGTTATGTCGCGTCA 59.862 57.895 8.78 8.78 0.00 4.35
3584 4317 1.138047 CCCTCGTTATGTCGCGTCAC 61.138 60.000 8.49 0.00 0.00 3.67
3585 4318 1.138047 CCTCGTTATGTCGCGTCACC 61.138 60.000 8.49 0.00 0.00 4.02
3586 4319 0.455464 CTCGTTATGTCGCGTCACCA 60.455 55.000 8.49 0.43 0.00 4.17
3587 4320 0.730155 TCGTTATGTCGCGTCACCAC 60.730 55.000 8.49 7.38 0.00 4.16
3588 4321 0.731514 CGTTATGTCGCGTCACCACT 60.732 55.000 8.49 0.00 0.00 4.00
3589 4322 1.466192 CGTTATGTCGCGTCACCACTA 60.466 52.381 8.49 0.00 0.00 2.74
3590 4323 2.598589 GTTATGTCGCGTCACCACTAA 58.401 47.619 8.49 0.62 0.00 2.24
3591 4324 2.267188 TATGTCGCGTCACCACTAAC 57.733 50.000 8.49 0.00 0.00 2.34
3592 4325 0.389426 ATGTCGCGTCACCACTAACC 60.389 55.000 8.49 0.00 0.00 2.85
3593 4326 1.288127 GTCGCGTCACCACTAACCT 59.712 57.895 5.77 0.00 0.00 3.50
3594 4327 1.007336 GTCGCGTCACCACTAACCTG 61.007 60.000 5.77 0.00 0.00 4.00
3595 4328 1.006571 CGCGTCACCACTAACCTGT 60.007 57.895 0.00 0.00 0.00 4.00
3596 4329 1.282248 CGCGTCACCACTAACCTGTG 61.282 60.000 0.00 0.00 37.66 3.66
3597 4330 1.566018 GCGTCACCACTAACCTGTGC 61.566 60.000 0.00 0.00 36.68 4.57
3598 4331 0.033504 CGTCACCACTAACCTGTGCT 59.966 55.000 0.00 0.00 36.68 4.40
3599 4332 1.512926 GTCACCACTAACCTGTGCTG 58.487 55.000 0.00 0.00 36.68 4.41
3600 4333 0.250295 TCACCACTAACCTGTGCTGC 60.250 55.000 0.00 0.00 36.68 5.25
3601 4334 0.250467 CACCACTAACCTGTGCTGCT 60.250 55.000 0.00 0.00 36.68 4.24
3602 4335 0.474184 ACCACTAACCTGTGCTGCTT 59.526 50.000 0.00 0.00 36.68 3.91
3603 4336 1.697432 ACCACTAACCTGTGCTGCTTA 59.303 47.619 0.00 0.00 36.68 3.09
3604 4337 2.105821 ACCACTAACCTGTGCTGCTTAA 59.894 45.455 0.00 0.00 36.68 1.85
3605 4338 3.244911 ACCACTAACCTGTGCTGCTTAAT 60.245 43.478 0.00 0.00 36.68 1.40
3606 4339 4.019681 ACCACTAACCTGTGCTGCTTAATA 60.020 41.667 0.00 0.00 36.68 0.98
3607 4340 5.126067 CCACTAACCTGTGCTGCTTAATAT 58.874 41.667 0.00 0.00 36.68 1.28
3608 4341 6.126883 ACCACTAACCTGTGCTGCTTAATATA 60.127 38.462 0.00 0.00 36.68 0.86
3609 4342 6.765989 CCACTAACCTGTGCTGCTTAATATAA 59.234 38.462 0.00 0.00 36.68 0.98
3610 4343 7.254795 CCACTAACCTGTGCTGCTTAATATAAC 60.255 40.741 0.00 0.00 36.68 1.89
3611 4344 7.279981 CACTAACCTGTGCTGCTTAATATAACA 59.720 37.037 0.00 0.00 0.00 2.41
3612 4345 7.827236 ACTAACCTGTGCTGCTTAATATAACAA 59.173 33.333 0.00 0.00 0.00 2.83
3613 4346 7.461182 AACCTGTGCTGCTTAATATAACAAA 57.539 32.000 0.00 0.00 0.00 2.83
3614 4347 7.088589 ACCTGTGCTGCTTAATATAACAAAG 57.911 36.000 0.00 0.00 0.00 2.77
3615 4348 6.884295 ACCTGTGCTGCTTAATATAACAAAGA 59.116 34.615 0.00 0.00 0.00 2.52
3616 4349 7.393234 ACCTGTGCTGCTTAATATAACAAAGAA 59.607 33.333 0.00 0.00 0.00 2.52
3617 4350 8.243426 CCTGTGCTGCTTAATATAACAAAGAAA 58.757 33.333 0.00 0.00 0.00 2.52
3618 4351 9.624697 CTGTGCTGCTTAATATAACAAAGAAAA 57.375 29.630 0.00 0.00 0.00 2.29
3619 4352 9.624697 TGTGCTGCTTAATATAACAAAGAAAAG 57.375 29.630 0.00 0.00 0.00 2.27
3620 4353 9.840427 GTGCTGCTTAATATAACAAAGAAAAGA 57.160 29.630 0.00 0.00 0.00 2.52
3631 4364 5.975693 ACAAAGAAAAGAAACAGTGACCA 57.024 34.783 0.00 0.00 0.00 4.02
3649 4382 2.234908 ACCAGAGCGAGCAAGACTTTAT 59.765 45.455 0.00 0.00 0.00 1.40
3669 4402 0.595825 GACTTGCTGTGCCACTTTGC 60.596 55.000 0.00 0.00 0.00 3.68
3722 4455 7.040961 GGTGCTGTTGTTAACTTTGGTAGATTA 60.041 37.037 7.22 0.00 0.00 1.75
3749 4484 1.416030 ACATTTTGTTGGCCCAGGTTC 59.584 47.619 0.00 0.00 0.00 3.62
3750 4485 1.415659 CATTTTGTTGGCCCAGGTTCA 59.584 47.619 0.00 0.00 0.00 3.18
3933 4671 9.589461 TCAAAACCCTTTATTAAGTGGTAATCA 57.411 29.630 5.43 0.00 35.30 2.57
3937 4675 9.596308 AACCCTTTATTAAGTGGTAATCAAAGT 57.404 29.630 5.43 0.00 35.30 2.66
3946 4684 9.595823 TTAAGTGGTAATCAAAGTACTAGCATC 57.404 33.333 0.00 0.00 0.00 3.91
3947 4685 7.182817 AGTGGTAATCAAAGTACTAGCATCA 57.817 36.000 0.00 0.00 0.00 3.07
3948 4686 7.796054 AGTGGTAATCAAAGTACTAGCATCAT 58.204 34.615 0.00 0.00 0.00 2.45
3949 4687 8.267894 AGTGGTAATCAAAGTACTAGCATCATT 58.732 33.333 0.00 0.00 0.00 2.57
3950 4688 8.893727 GTGGTAATCAAAGTACTAGCATCATTT 58.106 33.333 0.00 0.00 0.00 2.32
3956 4694 7.974675 TCAAAGTACTAGCATCATTTACAAGC 58.025 34.615 0.00 0.00 0.00 4.01
3957 4695 7.606073 TCAAAGTACTAGCATCATTTACAAGCA 59.394 33.333 0.00 0.00 0.00 3.91
3958 4696 8.400947 CAAAGTACTAGCATCATTTACAAGCAT 58.599 33.333 0.00 0.00 0.00 3.79
3959 4697 9.613428 AAAGTACTAGCATCATTTACAAGCATA 57.387 29.630 0.00 0.00 0.00 3.14
3960 4698 8.824159 AGTACTAGCATCATTTACAAGCATAG 57.176 34.615 0.00 0.00 0.00 2.23
3961 4699 7.875041 AGTACTAGCATCATTTACAAGCATAGG 59.125 37.037 0.00 0.00 0.00 2.57
3962 4700 6.000219 ACTAGCATCATTTACAAGCATAGGG 59.000 40.000 0.00 0.00 0.00 3.53
3963 4701 4.147321 AGCATCATTTACAAGCATAGGGG 58.853 43.478 0.00 0.00 0.00 4.79
3964 4702 3.891366 GCATCATTTACAAGCATAGGGGT 59.109 43.478 0.00 0.00 0.00 4.95
3965 4703 5.070001 GCATCATTTACAAGCATAGGGGTA 58.930 41.667 0.00 0.00 0.00 3.69
3966 4704 5.534654 GCATCATTTACAAGCATAGGGGTAA 59.465 40.000 0.00 0.00 0.00 2.85
3967 4705 6.209391 GCATCATTTACAAGCATAGGGGTAAT 59.791 38.462 0.00 0.00 0.00 1.89
3968 4706 7.596494 CATCATTTACAAGCATAGGGGTAATG 58.404 38.462 0.00 0.00 0.00 1.90
3969 4707 6.068010 TCATTTACAAGCATAGGGGTAATGG 58.932 40.000 0.00 0.00 0.00 3.16
3970 4708 2.364972 ACAAGCATAGGGGTAATGGC 57.635 50.000 0.00 0.00 0.00 4.40
3971 4709 1.568597 ACAAGCATAGGGGTAATGGCA 59.431 47.619 0.00 0.00 0.00 4.92
3972 4710 1.956477 CAAGCATAGGGGTAATGGCAC 59.044 52.381 0.00 0.00 0.00 5.01
3973 4711 1.522900 AGCATAGGGGTAATGGCACT 58.477 50.000 0.00 0.00 0.00 4.40
3974 4712 2.701551 AGCATAGGGGTAATGGCACTA 58.298 47.619 0.00 0.00 0.00 2.74
3975 4713 2.639839 AGCATAGGGGTAATGGCACTAG 59.360 50.000 0.00 0.00 0.00 2.57
3976 4714 2.290323 GCATAGGGGTAATGGCACTAGG 60.290 54.545 0.00 0.00 0.00 3.02
3977 4715 2.881266 TAGGGGTAATGGCACTAGGT 57.119 50.000 0.00 0.00 0.00 3.08
3978 4716 1.213296 AGGGGTAATGGCACTAGGTG 58.787 55.000 0.00 0.00 36.51 4.00
3991 4729 3.950397 CACTAGGTGCCTTATCAAACCA 58.050 45.455 0.00 0.00 35.01 3.67
3992 4730 4.331968 CACTAGGTGCCTTATCAAACCAA 58.668 43.478 0.00 0.00 35.01 3.67
3993 4731 4.396166 CACTAGGTGCCTTATCAAACCAAG 59.604 45.833 0.00 0.00 35.01 3.61
3994 4732 3.525800 AGGTGCCTTATCAAACCAAGT 57.474 42.857 0.00 0.00 35.01 3.16
3995 4733 4.650972 AGGTGCCTTATCAAACCAAGTA 57.349 40.909 0.00 0.00 35.01 2.24
3996 4734 4.332828 AGGTGCCTTATCAAACCAAGTAC 58.667 43.478 0.00 0.00 35.01 2.73
3997 4735 3.442625 GGTGCCTTATCAAACCAAGTACC 59.557 47.826 0.00 0.00 32.69 3.34
3998 4736 4.076394 GTGCCTTATCAAACCAAGTACCA 58.924 43.478 0.00 0.00 0.00 3.25
3999 4737 4.156008 GTGCCTTATCAAACCAAGTACCAG 59.844 45.833 0.00 0.00 0.00 4.00
4000 4738 3.694566 GCCTTATCAAACCAAGTACCAGG 59.305 47.826 0.00 0.00 0.00 4.45
4001 4739 4.809691 GCCTTATCAAACCAAGTACCAGGT 60.810 45.833 0.00 0.00 40.61 4.00
4002 4740 4.700213 CCTTATCAAACCAAGTACCAGGTG 59.300 45.833 0.76 0.00 38.37 4.00
4003 4741 2.649531 TCAAACCAAGTACCAGGTGG 57.350 50.000 0.76 0.00 38.37 4.61
4004 4742 2.128535 TCAAACCAAGTACCAGGTGGA 58.871 47.619 0.76 6.31 38.37 4.02
4005 4743 2.105821 TCAAACCAAGTACCAGGTGGAG 59.894 50.000 0.76 2.21 38.37 3.86
4006 4744 2.105821 CAAACCAAGTACCAGGTGGAGA 59.894 50.000 0.76 0.00 38.37 3.71
4007 4745 2.112279 ACCAAGTACCAGGTGGAGAA 57.888 50.000 0.76 0.00 36.60 2.87
4008 4746 2.414612 ACCAAGTACCAGGTGGAGAAA 58.585 47.619 0.76 0.00 36.60 2.52
4009 4747 2.781174 ACCAAGTACCAGGTGGAGAAAA 59.219 45.455 0.76 0.00 36.60 2.29
4010 4748 3.397955 ACCAAGTACCAGGTGGAGAAAAT 59.602 43.478 0.76 0.00 36.60 1.82
4011 4749 4.010349 CCAAGTACCAGGTGGAGAAAATC 58.990 47.826 0.76 0.00 38.94 2.17
4012 4750 4.263506 CCAAGTACCAGGTGGAGAAAATCT 60.264 45.833 0.76 0.00 38.94 2.40
4013 4751 5.045869 CCAAGTACCAGGTGGAGAAAATCTA 60.046 44.000 0.76 0.00 38.94 1.98
4014 4752 5.941555 AGTACCAGGTGGAGAAAATCTAG 57.058 43.478 0.76 0.00 38.94 2.43
4015 4753 3.636153 ACCAGGTGGAGAAAATCTAGC 57.364 47.619 2.10 0.00 38.94 3.42
4016 4754 2.912956 ACCAGGTGGAGAAAATCTAGCA 59.087 45.455 2.10 0.00 39.22 3.49
4017 4755 3.330701 ACCAGGTGGAGAAAATCTAGCAA 59.669 43.478 2.10 0.00 39.22 3.91
4018 4756 4.018050 ACCAGGTGGAGAAAATCTAGCAAT 60.018 41.667 2.10 0.00 39.22 3.56
4019 4757 4.578105 CCAGGTGGAGAAAATCTAGCAATC 59.422 45.833 0.00 0.00 39.22 2.67
4020 4758 4.578105 CAGGTGGAGAAAATCTAGCAATCC 59.422 45.833 0.00 0.00 39.22 3.01
4021 4759 4.476479 AGGTGGAGAAAATCTAGCAATCCT 59.524 41.667 0.00 0.00 39.22 3.24
4022 4760 4.819088 GGTGGAGAAAATCTAGCAATCCTC 59.181 45.833 0.00 0.00 36.92 3.71
4023 4761 4.509600 GTGGAGAAAATCTAGCAATCCTCG 59.490 45.833 0.00 0.00 0.00 4.63
4024 4762 3.496507 GGAGAAAATCTAGCAATCCTCGC 59.503 47.826 0.00 0.00 0.00 5.03
4025 4763 3.471680 AGAAAATCTAGCAATCCTCGCC 58.528 45.455 0.00 0.00 0.00 5.54
4026 4764 1.871080 AAATCTAGCAATCCTCGCCG 58.129 50.000 0.00 0.00 0.00 6.46
4027 4765 0.034059 AATCTAGCAATCCTCGCCGG 59.966 55.000 0.00 0.00 0.00 6.13
4028 4766 1.115930 ATCTAGCAATCCTCGCCGGT 61.116 55.000 1.90 0.00 0.00 5.28
4029 4767 1.144057 CTAGCAATCCTCGCCGGTT 59.856 57.895 1.90 0.00 0.00 4.44
4030 4768 0.876342 CTAGCAATCCTCGCCGGTTC 60.876 60.000 1.90 0.00 0.00 3.62
4031 4769 1.609635 TAGCAATCCTCGCCGGTTCA 61.610 55.000 1.90 0.00 0.00 3.18
4032 4770 1.819632 GCAATCCTCGCCGGTTCAT 60.820 57.895 1.90 0.00 0.00 2.57
4033 4771 2.016961 CAATCCTCGCCGGTTCATG 58.983 57.895 1.90 0.00 0.00 3.07
4034 4772 1.819632 AATCCTCGCCGGTTCATGC 60.820 57.895 1.90 0.00 0.00 4.06
4039 4777 3.925238 CGCCGGTTCATGCGCTAC 61.925 66.667 9.73 1.22 44.64 3.58
4040 4778 2.817834 GCCGGTTCATGCGCTACA 60.818 61.111 9.73 0.00 0.00 2.74
4041 4779 2.395360 GCCGGTTCATGCGCTACAA 61.395 57.895 9.73 0.00 0.00 2.41
4042 4780 1.917782 GCCGGTTCATGCGCTACAAA 61.918 55.000 9.73 0.00 0.00 2.83
4043 4781 0.519519 CCGGTTCATGCGCTACAAAA 59.480 50.000 9.73 0.00 0.00 2.44
4044 4782 1.132262 CCGGTTCATGCGCTACAAAAT 59.868 47.619 9.73 0.00 0.00 1.82
4045 4783 2.415357 CCGGTTCATGCGCTACAAAATT 60.415 45.455 9.73 0.00 0.00 1.82
4046 4784 3.241701 CGGTTCATGCGCTACAAAATTT 58.758 40.909 9.73 0.00 0.00 1.82
4047 4785 3.300590 CGGTTCATGCGCTACAAAATTTC 59.699 43.478 9.73 0.00 0.00 2.17
4048 4786 3.612423 GGTTCATGCGCTACAAAATTTCC 59.388 43.478 9.73 0.00 0.00 3.13
4049 4787 4.485163 GTTCATGCGCTACAAAATTTCCT 58.515 39.130 9.73 0.00 0.00 3.36
4050 4788 4.782019 TCATGCGCTACAAAATTTCCTT 57.218 36.364 9.73 0.00 0.00 3.36
4051 4789 4.732784 TCATGCGCTACAAAATTTCCTTC 58.267 39.130 9.73 0.00 0.00 3.46
4052 4790 4.458989 TCATGCGCTACAAAATTTCCTTCT 59.541 37.500 9.73 0.00 0.00 2.85
4053 4791 4.419522 TGCGCTACAAAATTTCCTTCTC 57.580 40.909 9.73 0.00 0.00 2.87
4054 4792 3.818210 TGCGCTACAAAATTTCCTTCTCA 59.182 39.130 9.73 0.00 0.00 3.27
4055 4793 4.277174 TGCGCTACAAAATTTCCTTCTCAA 59.723 37.500 9.73 0.00 0.00 3.02
4056 4794 5.048083 TGCGCTACAAAATTTCCTTCTCAAT 60.048 36.000 9.73 0.00 0.00 2.57
4057 4795 6.150307 TGCGCTACAAAATTTCCTTCTCAATA 59.850 34.615 9.73 0.00 0.00 1.90
4058 4796 7.027161 GCGCTACAAAATTTCCTTCTCAATAA 58.973 34.615 0.00 0.00 0.00 1.40
4059 4797 7.008357 GCGCTACAAAATTTCCTTCTCAATAAC 59.992 37.037 0.00 0.00 0.00 1.89
4060 4798 8.020819 CGCTACAAAATTTCCTTCTCAATAACA 58.979 33.333 0.00 0.00 0.00 2.41
4061 4799 9.346725 GCTACAAAATTTCCTTCTCAATAACAG 57.653 33.333 0.00 0.00 0.00 3.16
4064 4802 7.653311 ACAAAATTTCCTTCTCAATAACAGTGC 59.347 33.333 0.00 0.00 0.00 4.40
4065 4803 7.530426 AAATTTCCTTCTCAATAACAGTGCT 57.470 32.000 0.00 0.00 0.00 4.40
4066 4804 6.749923 ATTTCCTTCTCAATAACAGTGCTC 57.250 37.500 0.00 0.00 0.00 4.26
4067 4805 3.849911 TCCTTCTCAATAACAGTGCTCG 58.150 45.455 0.00 0.00 0.00 5.03
4068 4806 3.258372 TCCTTCTCAATAACAGTGCTCGT 59.742 43.478 0.00 0.00 0.00 4.18
4069 4807 4.461431 TCCTTCTCAATAACAGTGCTCGTA 59.539 41.667 0.00 0.00 0.00 3.43
4070 4808 4.800993 CCTTCTCAATAACAGTGCTCGTAG 59.199 45.833 0.00 0.00 0.00 3.51
4071 4809 5.386958 TTCTCAATAACAGTGCTCGTAGT 57.613 39.130 0.00 0.00 0.00 2.73
4072 4810 4.733850 TCTCAATAACAGTGCTCGTAGTG 58.266 43.478 0.00 0.00 0.00 2.74
4073 4811 3.845178 TCAATAACAGTGCTCGTAGTGG 58.155 45.455 0.00 0.00 0.00 4.00
4074 4812 3.508402 TCAATAACAGTGCTCGTAGTGGA 59.492 43.478 0.00 0.00 0.00 4.02
4075 4813 3.505464 ATAACAGTGCTCGTAGTGGAC 57.495 47.619 0.00 0.00 42.53 4.02
4079 4817 3.888093 GTGCTCGTAGTGGACTTGT 57.112 52.632 0.00 0.00 39.22 3.16
4080 4818 1.419374 GTGCTCGTAGTGGACTTGTG 58.581 55.000 0.00 0.00 39.22 3.33
4081 4819 1.000607 GTGCTCGTAGTGGACTTGTGA 60.001 52.381 0.00 0.00 39.22 3.58
4082 4820 1.893137 TGCTCGTAGTGGACTTGTGAT 59.107 47.619 0.00 0.00 0.00 3.06
4083 4821 3.086282 TGCTCGTAGTGGACTTGTGATA 58.914 45.455 0.00 0.00 0.00 2.15
4084 4822 3.119602 TGCTCGTAGTGGACTTGTGATAC 60.120 47.826 0.00 0.00 0.00 2.24
4085 4823 3.119602 GCTCGTAGTGGACTTGTGATACA 60.120 47.826 0.00 0.00 0.00 2.29
4086 4824 4.440250 GCTCGTAGTGGACTTGTGATACAT 60.440 45.833 0.00 0.00 0.00 2.29
4087 4825 5.244785 TCGTAGTGGACTTGTGATACATC 57.755 43.478 0.00 0.00 0.00 3.06
4088 4826 4.035684 CGTAGTGGACTTGTGATACATCG 58.964 47.826 0.00 0.00 0.00 3.84
4089 4827 2.893637 AGTGGACTTGTGATACATCGC 58.106 47.619 0.00 0.00 37.80 4.58
4090 4828 1.588404 GTGGACTTGTGATACATCGCG 59.412 52.381 0.00 0.00 40.07 5.87
4091 4829 1.474879 TGGACTTGTGATACATCGCGA 59.525 47.619 13.09 13.09 40.07 5.87
4095 4833 2.797491 CTTGTGATACATCGCGAGTCA 58.203 47.619 16.66 13.10 41.65 3.41
4096 4834 3.375642 CTTGTGATACATCGCGAGTCAT 58.624 45.455 16.66 6.90 41.65 3.06
4097 4835 4.537015 CTTGTGATACATCGCGAGTCATA 58.463 43.478 16.66 11.38 41.65 2.15
4098 4836 4.766404 TGTGATACATCGCGAGTCATAT 57.234 40.909 16.66 9.32 40.07 1.78
4099 4837 4.475944 TGTGATACATCGCGAGTCATATG 58.524 43.478 16.66 9.46 40.07 1.78
4100 4838 4.215399 TGTGATACATCGCGAGTCATATGA 59.785 41.667 16.66 0.00 40.07 2.15
4101 4839 5.106157 TGTGATACATCGCGAGTCATATGAT 60.106 40.000 16.66 2.69 40.07 2.45
4102 4840 6.093495 TGTGATACATCGCGAGTCATATGATA 59.907 38.462 16.66 2.85 40.07 2.15
4103 4841 6.967199 GTGATACATCGCGAGTCATATGATAA 59.033 38.462 16.66 0.00 0.00 1.75
4104 4842 6.967199 TGATACATCGCGAGTCATATGATAAC 59.033 38.462 16.66 3.04 0.00 1.89
4105 4843 5.121221 ACATCGCGAGTCATATGATAACA 57.879 39.130 16.66 0.00 0.00 2.41
4106 4844 5.528870 ACATCGCGAGTCATATGATAACAA 58.471 37.500 16.66 0.00 0.00 2.83
4107 4845 6.159293 ACATCGCGAGTCATATGATAACAAT 58.841 36.000 16.66 0.00 0.00 2.71
4108 4846 6.309009 ACATCGCGAGTCATATGATAACAATC 59.691 38.462 16.66 0.00 0.00 2.67
4109 4847 4.851558 TCGCGAGTCATATGATAACAATCG 59.148 41.667 3.71 7.69 0.00 3.34
4110 4848 4.617223 CGCGAGTCATATGATAACAATCGT 59.383 41.667 9.02 0.00 0.00 3.73
4111 4849 5.219859 CGCGAGTCATATGATAACAATCGTC 60.220 44.000 9.02 2.94 0.00 4.20
4112 4850 5.061064 GCGAGTCATATGATAACAATCGTCC 59.939 44.000 9.02 0.00 0.00 4.79
4113 4851 6.149633 CGAGTCATATGATAACAATCGTCCA 58.850 40.000 9.02 0.00 0.00 4.02
4114 4852 6.640907 CGAGTCATATGATAACAATCGTCCAA 59.359 38.462 9.02 0.00 0.00 3.53
4115 4853 7.169140 CGAGTCATATGATAACAATCGTCCAAA 59.831 37.037 9.02 0.00 0.00 3.28
4116 4854 8.908786 AGTCATATGATAACAATCGTCCAAAT 57.091 30.769 9.02 0.00 0.00 2.32
4117 4855 9.996554 AGTCATATGATAACAATCGTCCAAATA 57.003 29.630 9.02 0.00 0.00 1.40
4119 4857 8.935844 TCATATGATAACAATCGTCCAAATAGC 58.064 33.333 0.00 0.00 0.00 2.97
4120 4858 8.720562 CATATGATAACAATCGTCCAAATAGCA 58.279 33.333 0.00 0.00 0.00 3.49
4121 4859 6.603237 TGATAACAATCGTCCAAATAGCAG 57.397 37.500 0.00 0.00 0.00 4.24
4122 4860 3.764885 AACAATCGTCCAAATAGCAGC 57.235 42.857 0.00 0.00 0.00 5.25
4123 4861 2.710377 ACAATCGTCCAAATAGCAGCA 58.290 42.857 0.00 0.00 0.00 4.41
4124 4862 2.679837 ACAATCGTCCAAATAGCAGCAG 59.320 45.455 0.00 0.00 0.00 4.24
4125 4863 1.303309 ATCGTCCAAATAGCAGCAGC 58.697 50.000 0.00 0.00 42.56 5.25
4126 4864 0.744414 TCGTCCAAATAGCAGCAGCC 60.744 55.000 0.00 0.00 43.56 4.85
4127 4865 1.026182 CGTCCAAATAGCAGCAGCCA 61.026 55.000 0.00 0.00 43.56 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 0.796927 TAGAGACACAGAGTGCGTCG 59.203 55.000 0.00 0.00 34.82 5.12
80 84 1.289066 CAAGAACGTCGCCTCCTGA 59.711 57.895 0.00 0.00 0.00 3.86
147 151 2.417924 GGGTGTCTACTGATGACTGCAG 60.418 54.545 13.48 13.48 39.26 4.41
168 172 2.868662 CACTCACGGTGTCTACTGATG 58.131 52.381 8.17 0.00 40.79 3.07
179 183 1.083489 CACACAAACACACTCACGGT 58.917 50.000 0.00 0.00 0.00 4.83
180 184 1.083489 ACACACAAACACACTCACGG 58.917 50.000 0.00 0.00 0.00 4.94
181 185 1.729517 TCACACACAAACACACTCACG 59.270 47.619 0.00 0.00 0.00 4.35
182 186 2.476185 GCTCACACACAAACACACTCAC 60.476 50.000 0.00 0.00 0.00 3.51
183 187 1.737236 GCTCACACACAAACACACTCA 59.263 47.619 0.00 0.00 0.00 3.41
184 188 1.267532 CGCTCACACACAAACACACTC 60.268 52.381 0.00 0.00 0.00 3.51
355 361 9.892130 ATTCCACAGTTACCAAAAATACAAAAA 57.108 25.926 0.00 0.00 0.00 1.94
356 362 9.892130 AATTCCACAGTTACCAAAAATACAAAA 57.108 25.926 0.00 0.00 0.00 2.44
389 395 4.461081 TCCACCATGCCTTGTTATAAACAC 59.539 41.667 0.00 0.00 41.97 3.32
425 431 6.294065 GGATGTTGAGAGGTAGTAAGTATCCG 60.294 46.154 0.00 0.00 0.00 4.18
435 441 4.956700 TCTTAGTGGGATGTTGAGAGGTAG 59.043 45.833 0.00 0.00 0.00 3.18
436 442 4.710375 GTCTTAGTGGGATGTTGAGAGGTA 59.290 45.833 0.00 0.00 0.00 3.08
519 525 3.054361 GGGGTAGAACCAGTCATGTTCAT 60.054 47.826 5.99 0.00 43.57 2.57
546 553 5.047519 ACTGGTAGTACGATGCAAGTAAAGT 60.048 40.000 6.93 4.58 0.00 2.66
547 554 5.408356 ACTGGTAGTACGATGCAAGTAAAG 58.592 41.667 6.93 4.11 0.00 1.85
585 596 5.692115 TCCATGAGTTGGCAGTAAATCTA 57.308 39.130 0.00 0.00 46.01 1.98
634 647 7.259088 TCCTCTTCTTTTTGCTTATACCTCT 57.741 36.000 0.00 0.00 0.00 3.69
823 843 4.760047 GACGATGGTGGCTGCGGT 62.760 66.667 0.00 0.00 0.00 5.68
890 913 1.657804 GTGAAAAGGGAGGAGGAGGA 58.342 55.000 0.00 0.00 0.00 3.71
1089 1118 3.249189 ACCACCACCAGCACGGAT 61.249 61.111 0.00 0.00 38.63 4.18
1188 1218 1.451936 AAGCAAGCCGGTTCAGACT 59.548 52.632 1.90 0.00 0.00 3.24
1189 1219 4.065110 AAGCAAGCCGGTTCAGAC 57.935 55.556 1.90 0.00 0.00 3.51
1219 1258 2.034687 CCCACTTCAGCCCCAGTG 59.965 66.667 0.70 0.70 40.23 3.66
1226 1271 2.494870 AGATTTGCATTCCCACTTCAGC 59.505 45.455 0.00 0.00 0.00 4.26
1227 1272 4.219070 TGAAGATTTGCATTCCCACTTCAG 59.781 41.667 0.00 0.00 37.77 3.02
1234 1279 1.202336 CGGCTGAAGATTTGCATTCCC 60.202 52.381 0.00 0.00 0.00 3.97
1242 1287 1.902508 TCTCCTCACGGCTGAAGATTT 59.097 47.619 0.00 0.00 0.00 2.17
1425 1514 8.596293 GGGACTAGCTAATAGAGAGACTACTAA 58.404 40.741 0.00 0.00 35.30 2.24
1461 1581 5.064452 GGCTGATCTCTCTACACAAATGTTG 59.936 44.000 0.00 0.00 40.48 3.33
1479 1599 1.639635 AAATGGCGGGAGAGGCTGAT 61.640 55.000 0.00 0.00 37.59 2.90
1612 1744 1.533469 CCACCTCGTTCCGGAACTCT 61.533 60.000 37.19 18.41 39.08 3.24
1770 1903 0.840722 ATGAGACGGGTGAAAGGGGT 60.841 55.000 0.00 0.00 0.00 4.95
1830 2315 1.072505 TTTCAACCACCGCTCCTCC 59.927 57.895 0.00 0.00 0.00 4.30
1875 2467 1.743394 CCCCATTAACCAAACGAGCTC 59.257 52.381 2.73 2.73 0.00 4.09
1876 2468 1.615919 CCCCCATTAACCAAACGAGCT 60.616 52.381 0.00 0.00 0.00 4.09
1877 2469 0.815095 CCCCCATTAACCAAACGAGC 59.185 55.000 0.00 0.00 0.00 5.03
1915 2507 3.917760 GATCGCCGGGCAGTAGCT 61.918 66.667 20.71 0.00 41.70 3.32
1916 2508 4.971125 GGATCGCCGGGCAGTAGC 62.971 72.222 20.71 6.27 41.10 3.58
2051 2651 3.740397 CCATGTGGCGTGCAGGTG 61.740 66.667 8.40 0.00 0.00 4.00
2078 2715 3.691342 GCCGGAAAAGTTGGGGCC 61.691 66.667 5.05 0.00 37.82 5.80
2141 2778 4.862574 GCAAACGTACTCTGTACATCATGA 59.137 41.667 0.00 0.00 0.00 3.07
2210 2848 6.203145 TGCTTGCATCTACGTAACAAAGTAAA 59.797 34.615 0.00 0.00 0.00 2.01
2221 2868 1.363744 GCTCTTGCTTGCATCTACGT 58.636 50.000 0.00 0.00 36.03 3.57
2222 2869 0.299895 CGCTCTTGCTTGCATCTACG 59.700 55.000 0.00 0.00 36.97 3.51
2539 3223 4.215742 CGCTGCATTGCATGGGGG 62.216 66.667 12.53 5.45 38.13 5.40
2600 3284 0.597637 AGCTGAACACGTCCGACTTG 60.598 55.000 3.56 3.56 0.00 3.16
2713 3397 9.522804 CCACTAGAGTTTTGAGAGATTATGTAC 57.477 37.037 0.00 0.00 0.00 2.90
2715 3399 8.140112 ACCACTAGAGTTTTGAGAGATTATGT 57.860 34.615 0.00 0.00 0.00 2.29
2748 3462 5.178438 GCTGAAGCTTACCAGTAGATAATGC 59.822 44.000 14.63 0.00 38.21 3.56
2902 3618 2.601666 TCCTGCACGCAGAGGAGT 60.602 61.111 20.42 0.00 46.30 3.85
3334 4053 3.811722 TTCTATGCACGAAGCTTTGTG 57.188 42.857 33.72 33.72 45.94 3.33
3335 4054 3.563808 TGTTTCTATGCACGAAGCTTTGT 59.436 39.130 13.90 13.90 45.94 2.83
3336 4055 4.145876 TGTTTCTATGCACGAAGCTTTG 57.854 40.909 12.41 12.41 45.94 2.77
3338 4057 3.403038 ACTGTTTCTATGCACGAAGCTT 58.597 40.909 0.00 0.00 45.94 3.74
3340 4059 3.813529 AACTGTTTCTATGCACGAAGC 57.186 42.857 0.00 0.00 45.96 3.86
3403 4135 4.443978 ACCCTGAATTCCCTGATACATG 57.556 45.455 2.27 0.00 0.00 3.21
3404 4136 5.203528 CAAACCCTGAATTCCCTGATACAT 58.796 41.667 2.27 0.00 0.00 2.29
3460 4193 5.189928 TGTCCACATTACAACACTTTCAGT 58.810 37.500 0.00 0.00 0.00 3.41
3504 4237 1.595093 GGTCCGGTCAATTGCCAAGG 61.595 60.000 16.01 11.09 0.00 3.61
3519 4252 2.987962 GTTCCTCCTTCCCGGTCC 59.012 66.667 0.00 0.00 0.00 4.46
3520 4253 1.980772 TCGTTCCTCCTTCCCGGTC 60.981 63.158 0.00 0.00 0.00 4.79
3523 4256 2.577593 GGTCGTTCCTCCTTCCCG 59.422 66.667 0.00 0.00 0.00 5.14
3529 4262 0.815734 TCTCATTCGGTCGTTCCTCC 59.184 55.000 0.00 0.00 0.00 4.30
3544 4277 4.344104 GGTGAAAGAAATGGGGAATCTCA 58.656 43.478 0.00 0.00 0.00 3.27
3578 4311 1.566018 GCACAGGTTAGTGGTGACGC 61.566 60.000 0.00 0.00 39.87 5.19
3579 4312 2.528797 GCACAGGTTAGTGGTGACG 58.471 57.895 0.00 0.00 39.87 4.35
3584 4317 2.472695 TAAGCAGCACAGGTTAGTGG 57.527 50.000 0.00 0.00 39.87 4.00
3585 4318 7.279981 TGTTATATTAAGCAGCACAGGTTAGTG 59.720 37.037 0.00 0.00 42.37 2.74
3586 4319 7.335627 TGTTATATTAAGCAGCACAGGTTAGT 58.664 34.615 0.00 0.00 33.54 2.24
3587 4320 7.786178 TGTTATATTAAGCAGCACAGGTTAG 57.214 36.000 0.00 0.00 33.54 2.34
3588 4321 8.568676 TTTGTTATATTAAGCAGCACAGGTTA 57.431 30.769 0.00 0.00 0.00 2.85
3589 4322 7.393234 TCTTTGTTATATTAAGCAGCACAGGTT 59.607 33.333 0.00 0.00 0.00 3.50
3590 4323 6.884295 TCTTTGTTATATTAAGCAGCACAGGT 59.116 34.615 0.00 0.00 0.00 4.00
3591 4324 7.320443 TCTTTGTTATATTAAGCAGCACAGG 57.680 36.000 0.00 0.00 0.00 4.00
3592 4325 9.624697 TTTTCTTTGTTATATTAAGCAGCACAG 57.375 29.630 0.00 0.00 0.00 3.66
3593 4326 9.624697 CTTTTCTTTGTTATATTAAGCAGCACA 57.375 29.630 0.00 0.00 0.00 4.57
3594 4327 9.840427 TCTTTTCTTTGTTATATTAAGCAGCAC 57.160 29.630 0.00 0.00 0.00 4.40
3605 4338 9.179909 TGGTCACTGTTTCTTTTCTTTGTTATA 57.820 29.630 0.00 0.00 0.00 0.98
3606 4339 8.062065 TGGTCACTGTTTCTTTTCTTTGTTAT 57.938 30.769 0.00 0.00 0.00 1.89
3607 4340 7.392113 TCTGGTCACTGTTTCTTTTCTTTGTTA 59.608 33.333 0.00 0.00 0.00 2.41
3608 4341 6.208599 TCTGGTCACTGTTTCTTTTCTTTGTT 59.791 34.615 0.00 0.00 0.00 2.83
3609 4342 5.710099 TCTGGTCACTGTTTCTTTTCTTTGT 59.290 36.000 0.00 0.00 0.00 2.83
3610 4343 6.194796 TCTGGTCACTGTTTCTTTTCTTTG 57.805 37.500 0.00 0.00 0.00 2.77
3611 4344 5.163612 GCTCTGGTCACTGTTTCTTTTCTTT 60.164 40.000 0.00 0.00 0.00 2.52
3612 4345 4.336713 GCTCTGGTCACTGTTTCTTTTCTT 59.663 41.667 0.00 0.00 0.00 2.52
3613 4346 3.879892 GCTCTGGTCACTGTTTCTTTTCT 59.120 43.478 0.00 0.00 0.00 2.52
3614 4347 3.303395 CGCTCTGGTCACTGTTTCTTTTC 60.303 47.826 0.00 0.00 0.00 2.29
3615 4348 2.614057 CGCTCTGGTCACTGTTTCTTTT 59.386 45.455 0.00 0.00 0.00 2.27
3616 4349 2.158957 TCGCTCTGGTCACTGTTTCTTT 60.159 45.455 0.00 0.00 0.00 2.52
3617 4350 1.412710 TCGCTCTGGTCACTGTTTCTT 59.587 47.619 0.00 0.00 0.00 2.52
3618 4351 1.000283 CTCGCTCTGGTCACTGTTTCT 60.000 52.381 0.00 0.00 0.00 2.52
3619 4352 1.423395 CTCGCTCTGGTCACTGTTTC 58.577 55.000 0.00 0.00 0.00 2.78
3620 4353 0.601311 GCTCGCTCTGGTCACTGTTT 60.601 55.000 0.00 0.00 0.00 2.83
3621 4354 1.005630 GCTCGCTCTGGTCACTGTT 60.006 57.895 0.00 0.00 0.00 3.16
3622 4355 1.748329 TTGCTCGCTCTGGTCACTGT 61.748 55.000 0.00 0.00 0.00 3.55
3623 4356 1.005748 TTGCTCGCTCTGGTCACTG 60.006 57.895 0.00 0.00 0.00 3.66
3631 4364 3.194542 AGTCATAAAGTCTTGCTCGCTCT 59.805 43.478 0.00 0.00 0.00 4.09
3649 4382 0.740149 CAAAGTGGCACAGCAAGTCA 59.260 50.000 21.41 0.00 41.80 3.41
3669 4402 1.302033 GGTGTGAGCAGTGGACCAG 60.302 63.158 0.00 0.00 0.00 4.00
3731 4466 1.799933 TGAACCTGGGCCAACAAAAT 58.200 45.000 8.04 0.00 0.00 1.82
3732 4467 1.415659 CATGAACCTGGGCCAACAAAA 59.584 47.619 8.04 0.00 0.00 2.44
3749 4484 2.358125 TCCCGCACAACGTCCATG 60.358 61.111 0.00 0.00 41.42 3.66
3750 4485 2.047274 CTCCCGCACAACGTCCAT 60.047 61.111 0.00 0.00 41.42 3.41
3907 4645 9.589461 TGATTACCACTTAATAAAGGGTTTTGA 57.411 29.630 1.39 0.00 37.42 2.69
3911 4649 9.596308 ACTTTGATTACCACTTAATAAAGGGTT 57.404 29.630 0.00 0.00 37.42 4.11
3920 4658 9.595823 GATGCTAGTACTTTGATTACCACTTAA 57.404 33.333 0.00 0.00 0.00 1.85
3921 4659 8.755028 TGATGCTAGTACTTTGATTACCACTTA 58.245 33.333 0.00 0.00 0.00 2.24
3922 4660 7.620880 TGATGCTAGTACTTTGATTACCACTT 58.379 34.615 0.00 0.00 0.00 3.16
3923 4661 7.182817 TGATGCTAGTACTTTGATTACCACT 57.817 36.000 0.00 0.00 0.00 4.00
3924 4662 8.438676 AATGATGCTAGTACTTTGATTACCAC 57.561 34.615 0.00 0.00 0.00 4.16
3930 4668 8.616076 GCTTGTAAATGATGCTAGTACTTTGAT 58.384 33.333 0.00 0.00 0.00 2.57
3931 4669 7.606073 TGCTTGTAAATGATGCTAGTACTTTGA 59.394 33.333 0.00 0.00 0.00 2.69
3932 4670 7.751732 TGCTTGTAAATGATGCTAGTACTTTG 58.248 34.615 0.00 0.00 0.00 2.77
3933 4671 7.921786 TGCTTGTAAATGATGCTAGTACTTT 57.078 32.000 0.00 0.00 0.00 2.66
3934 4672 9.265901 CTATGCTTGTAAATGATGCTAGTACTT 57.734 33.333 0.00 0.00 0.00 2.24
3935 4673 7.875041 CCTATGCTTGTAAATGATGCTAGTACT 59.125 37.037 0.00 0.00 0.00 2.73
3936 4674 7.118390 CCCTATGCTTGTAAATGATGCTAGTAC 59.882 40.741 0.00 0.00 0.00 2.73
3937 4675 7.161404 CCCTATGCTTGTAAATGATGCTAGTA 58.839 38.462 0.00 0.00 0.00 1.82
3938 4676 6.000219 CCCTATGCTTGTAAATGATGCTAGT 59.000 40.000 0.00 0.00 0.00 2.57
3939 4677 5.413833 CCCCTATGCTTGTAAATGATGCTAG 59.586 44.000 0.00 0.00 0.00 3.42
3940 4678 5.163099 ACCCCTATGCTTGTAAATGATGCTA 60.163 40.000 0.00 0.00 0.00 3.49
3941 4679 4.147321 CCCCTATGCTTGTAAATGATGCT 58.853 43.478 0.00 0.00 0.00 3.79
3942 4680 3.891366 ACCCCTATGCTTGTAAATGATGC 59.109 43.478 0.00 0.00 0.00 3.91
3943 4681 7.309377 CCATTACCCCTATGCTTGTAAATGATG 60.309 40.741 0.00 0.00 0.00 3.07
3944 4682 6.721208 CCATTACCCCTATGCTTGTAAATGAT 59.279 38.462 0.00 0.00 0.00 2.45
3945 4683 6.068010 CCATTACCCCTATGCTTGTAAATGA 58.932 40.000 0.00 0.00 0.00 2.57
3946 4684 5.278957 GCCATTACCCCTATGCTTGTAAATG 60.279 44.000 0.00 0.00 0.00 2.32
3947 4685 4.832823 GCCATTACCCCTATGCTTGTAAAT 59.167 41.667 0.00 0.00 0.00 1.40
3948 4686 4.211920 GCCATTACCCCTATGCTTGTAAA 58.788 43.478 0.00 0.00 0.00 2.01
3949 4687 3.203263 TGCCATTACCCCTATGCTTGTAA 59.797 43.478 0.00 0.00 0.00 2.41
3950 4688 2.780592 TGCCATTACCCCTATGCTTGTA 59.219 45.455 0.00 0.00 0.00 2.41
3951 4689 1.568597 TGCCATTACCCCTATGCTTGT 59.431 47.619 0.00 0.00 0.00 3.16
3952 4690 1.956477 GTGCCATTACCCCTATGCTTG 59.044 52.381 0.00 0.00 0.00 4.01
3953 4691 1.852965 AGTGCCATTACCCCTATGCTT 59.147 47.619 0.00 0.00 0.00 3.91
3954 4692 1.522900 AGTGCCATTACCCCTATGCT 58.477 50.000 0.00 0.00 0.00 3.79
3955 4693 2.290323 CCTAGTGCCATTACCCCTATGC 60.290 54.545 0.00 0.00 0.00 3.14
3956 4694 2.979678 ACCTAGTGCCATTACCCCTATG 59.020 50.000 0.00 0.00 0.00 2.23
3957 4695 2.979678 CACCTAGTGCCATTACCCCTAT 59.020 50.000 0.00 0.00 0.00 2.57
3958 4696 2.404559 CACCTAGTGCCATTACCCCTA 58.595 52.381 0.00 0.00 0.00 3.53
3959 4697 1.213296 CACCTAGTGCCATTACCCCT 58.787 55.000 0.00 0.00 0.00 4.79
3960 4698 3.800826 CACCTAGTGCCATTACCCC 57.199 57.895 0.00 0.00 0.00 4.95
3970 4708 3.950397 TGGTTTGATAAGGCACCTAGTG 58.050 45.455 0.00 0.00 36.51 2.74
3971 4709 4.042934 ACTTGGTTTGATAAGGCACCTAGT 59.957 41.667 0.00 0.00 39.59 2.57
3972 4710 4.589908 ACTTGGTTTGATAAGGCACCTAG 58.410 43.478 0.00 0.00 37.93 3.02
3973 4711 4.650972 ACTTGGTTTGATAAGGCACCTA 57.349 40.909 0.00 0.00 0.00 3.08
3974 4712 3.525800 ACTTGGTTTGATAAGGCACCT 57.474 42.857 0.00 0.00 0.00 4.00
3975 4713 3.442625 GGTACTTGGTTTGATAAGGCACC 59.557 47.826 0.00 0.00 0.00 5.01
3976 4714 4.076394 TGGTACTTGGTTTGATAAGGCAC 58.924 43.478 0.00 0.00 0.00 5.01
3977 4715 4.331968 CTGGTACTTGGTTTGATAAGGCA 58.668 43.478 0.00 0.00 0.00 4.75
3978 4716 3.694566 CCTGGTACTTGGTTTGATAAGGC 59.305 47.826 0.00 0.00 0.00 4.35
3979 4717 4.700213 CACCTGGTACTTGGTTTGATAAGG 59.300 45.833 0.00 0.00 34.19 2.69
3980 4718 4.700213 CCACCTGGTACTTGGTTTGATAAG 59.300 45.833 0.00 0.00 34.19 1.73
3981 4719 4.351407 TCCACCTGGTACTTGGTTTGATAA 59.649 41.667 0.00 0.00 34.19 1.75
3982 4720 3.911260 TCCACCTGGTACTTGGTTTGATA 59.089 43.478 0.00 0.00 34.19 2.15
3983 4721 2.714250 TCCACCTGGTACTTGGTTTGAT 59.286 45.455 0.00 0.00 34.19 2.57
3984 4722 2.105821 CTCCACCTGGTACTTGGTTTGA 59.894 50.000 0.00 6.96 34.19 2.69
3985 4723 2.105821 TCTCCACCTGGTACTTGGTTTG 59.894 50.000 0.00 3.71 34.19 2.93
3986 4724 2.414612 TCTCCACCTGGTACTTGGTTT 58.585 47.619 0.00 0.00 34.19 3.27
3987 4725 2.112279 TCTCCACCTGGTACTTGGTT 57.888 50.000 0.00 0.00 34.19 3.67
3988 4726 2.112279 TTCTCCACCTGGTACTTGGT 57.888 50.000 0.00 4.83 36.47 3.67
3989 4727 3.502123 TTTTCTCCACCTGGTACTTGG 57.498 47.619 0.00 0.00 36.34 3.61
3990 4728 4.911390 AGATTTTCTCCACCTGGTACTTG 58.089 43.478 0.00 0.00 36.34 3.16
3991 4729 5.338463 GCTAGATTTTCTCCACCTGGTACTT 60.338 44.000 0.00 0.00 36.34 2.24
3992 4730 4.162509 GCTAGATTTTCTCCACCTGGTACT 59.837 45.833 0.00 0.00 36.34 2.73
3993 4731 4.081087 TGCTAGATTTTCTCCACCTGGTAC 60.081 45.833 0.00 0.00 36.34 3.34
3994 4732 4.101114 TGCTAGATTTTCTCCACCTGGTA 58.899 43.478 0.00 0.00 36.34 3.25
3995 4733 2.912956 TGCTAGATTTTCTCCACCTGGT 59.087 45.455 0.00 0.00 36.34 4.00
3996 4734 3.634397 TGCTAGATTTTCTCCACCTGG 57.366 47.619 0.00 0.00 0.00 4.45
3997 4735 4.578105 GGATTGCTAGATTTTCTCCACCTG 59.422 45.833 0.00 0.00 0.00 4.00
3998 4736 4.476479 AGGATTGCTAGATTTTCTCCACCT 59.524 41.667 0.00 0.00 0.00 4.00
3999 4737 4.786425 AGGATTGCTAGATTTTCTCCACC 58.214 43.478 0.00 0.00 0.00 4.61
4000 4738 4.509600 CGAGGATTGCTAGATTTTCTCCAC 59.490 45.833 0.00 0.00 0.00 4.02
4001 4739 4.697514 CGAGGATTGCTAGATTTTCTCCA 58.302 43.478 0.00 0.00 0.00 3.86
4002 4740 3.496507 GCGAGGATTGCTAGATTTTCTCC 59.503 47.826 0.00 0.00 44.02 3.71
4003 4741 4.723879 GCGAGGATTGCTAGATTTTCTC 57.276 45.455 0.00 0.00 44.02 2.87
4015 4753 2.016961 CATGAACCGGCGAGGATTG 58.983 57.895 9.30 0.00 45.00 2.67
4016 4754 1.819632 GCATGAACCGGCGAGGATT 60.820 57.895 9.30 0.00 45.00 3.01
4017 4755 2.203070 GCATGAACCGGCGAGGAT 60.203 61.111 9.30 0.00 45.00 3.24
4023 4761 1.917782 TTTGTAGCGCATGAACCGGC 61.918 55.000 11.47 0.00 0.00 6.13
4024 4762 0.519519 TTTTGTAGCGCATGAACCGG 59.480 50.000 11.47 0.00 0.00 5.28
4025 4763 2.542766 ATTTTGTAGCGCATGAACCG 57.457 45.000 11.47 0.00 0.00 4.44
4026 4764 3.612423 GGAAATTTTGTAGCGCATGAACC 59.388 43.478 11.47 0.00 0.00 3.62
4027 4765 4.485163 AGGAAATTTTGTAGCGCATGAAC 58.515 39.130 11.47 2.37 0.00 3.18
4028 4766 4.782019 AGGAAATTTTGTAGCGCATGAA 57.218 36.364 11.47 0.00 0.00 2.57
4029 4767 4.458989 AGAAGGAAATTTTGTAGCGCATGA 59.541 37.500 11.47 0.00 0.00 3.07
4030 4768 4.737054 AGAAGGAAATTTTGTAGCGCATG 58.263 39.130 11.47 0.00 0.00 4.06
4031 4769 4.458989 TGAGAAGGAAATTTTGTAGCGCAT 59.541 37.500 11.47 0.00 0.00 4.73
4032 4770 3.818210 TGAGAAGGAAATTTTGTAGCGCA 59.182 39.130 11.47 0.00 0.00 6.09
4033 4771 4.419522 TGAGAAGGAAATTTTGTAGCGC 57.580 40.909 0.00 0.00 0.00 5.92
4034 4772 8.020819 TGTTATTGAGAAGGAAATTTTGTAGCG 58.979 33.333 0.00 0.00 0.00 4.26
4035 4773 9.346725 CTGTTATTGAGAAGGAAATTTTGTAGC 57.653 33.333 0.00 0.00 0.00 3.58
4038 4776 7.653311 GCACTGTTATTGAGAAGGAAATTTTGT 59.347 33.333 0.00 0.00 0.00 2.83
4039 4777 7.869429 AGCACTGTTATTGAGAAGGAAATTTTG 59.131 33.333 0.00 0.00 0.00 2.44
4040 4778 7.955918 AGCACTGTTATTGAGAAGGAAATTTT 58.044 30.769 0.00 0.00 0.00 1.82
4041 4779 7.530426 AGCACTGTTATTGAGAAGGAAATTT 57.470 32.000 0.00 0.00 0.00 1.82
4042 4780 6.128172 CGAGCACTGTTATTGAGAAGGAAATT 60.128 38.462 0.00 0.00 0.00 1.82
4043 4781 5.352569 CGAGCACTGTTATTGAGAAGGAAAT 59.647 40.000 0.00 0.00 0.00 2.17
4044 4782 4.690748 CGAGCACTGTTATTGAGAAGGAAA 59.309 41.667 0.00 0.00 0.00 3.13
4045 4783 4.245660 CGAGCACTGTTATTGAGAAGGAA 58.754 43.478 0.00 0.00 0.00 3.36
4046 4784 3.258372 ACGAGCACTGTTATTGAGAAGGA 59.742 43.478 0.00 0.00 0.00 3.36
4047 4785 3.589988 ACGAGCACTGTTATTGAGAAGG 58.410 45.455 0.00 0.00 0.00 3.46
4048 4786 5.287274 CACTACGAGCACTGTTATTGAGAAG 59.713 44.000 0.00 0.00 0.00 2.85
4049 4787 5.161358 CACTACGAGCACTGTTATTGAGAA 58.839 41.667 0.00 0.00 0.00 2.87
4050 4788 4.380550 CCACTACGAGCACTGTTATTGAGA 60.381 45.833 0.00 0.00 0.00 3.27
4051 4789 3.859961 CCACTACGAGCACTGTTATTGAG 59.140 47.826 0.00 0.00 0.00 3.02
4052 4790 3.508402 TCCACTACGAGCACTGTTATTGA 59.492 43.478 0.00 0.00 0.00 2.57
4053 4791 3.612860 GTCCACTACGAGCACTGTTATTG 59.387 47.826 0.00 0.00 0.00 1.90
4054 4792 3.510360 AGTCCACTACGAGCACTGTTATT 59.490 43.478 0.00 0.00 0.00 1.40
4055 4793 3.090037 AGTCCACTACGAGCACTGTTAT 58.910 45.455 0.00 0.00 0.00 1.89
4056 4794 2.511659 AGTCCACTACGAGCACTGTTA 58.488 47.619 0.00 0.00 0.00 2.41
4057 4795 1.329256 AGTCCACTACGAGCACTGTT 58.671 50.000 0.00 0.00 0.00 3.16
4058 4796 1.000163 CAAGTCCACTACGAGCACTGT 60.000 52.381 0.00 0.00 0.00 3.55
4059 4797 1.000163 ACAAGTCCACTACGAGCACTG 60.000 52.381 0.00 0.00 0.00 3.66
4060 4798 1.000163 CACAAGTCCACTACGAGCACT 60.000 52.381 0.00 0.00 0.00 4.40
4061 4799 1.000607 TCACAAGTCCACTACGAGCAC 60.001 52.381 0.00 0.00 0.00 4.40
4062 4800 1.324383 TCACAAGTCCACTACGAGCA 58.676 50.000 0.00 0.00 0.00 4.26
4063 4801 2.656560 ATCACAAGTCCACTACGAGC 57.343 50.000 0.00 0.00 0.00 5.03
4064 4802 4.696899 TGTATCACAAGTCCACTACGAG 57.303 45.455 0.00 0.00 0.00 4.18
4065 4803 4.201881 CGATGTATCACAAGTCCACTACGA 60.202 45.833 0.00 0.00 0.00 3.43
4066 4804 4.035684 CGATGTATCACAAGTCCACTACG 58.964 47.826 0.00 0.00 0.00 3.51
4067 4805 3.797256 GCGATGTATCACAAGTCCACTAC 59.203 47.826 0.00 0.00 0.00 2.73
4068 4806 3.488553 CGCGATGTATCACAAGTCCACTA 60.489 47.826 0.00 0.00 0.00 2.74
4069 4807 2.735444 CGCGATGTATCACAAGTCCACT 60.735 50.000 0.00 0.00 0.00 4.00
4070 4808 1.588404 CGCGATGTATCACAAGTCCAC 59.412 52.381 0.00 0.00 0.00 4.02
4071 4809 1.474879 TCGCGATGTATCACAAGTCCA 59.525 47.619 3.71 0.00 0.00 4.02
4072 4810 2.120232 CTCGCGATGTATCACAAGTCC 58.880 52.381 10.36 0.00 0.00 3.85
4073 4811 2.784380 GACTCGCGATGTATCACAAGTC 59.216 50.000 10.36 5.60 0.00 3.01
4074 4812 2.163613 TGACTCGCGATGTATCACAAGT 59.836 45.455 10.36 0.00 0.00 3.16
4075 4813 2.797491 TGACTCGCGATGTATCACAAG 58.203 47.619 10.36 0.00 0.00 3.16
4076 4814 2.931512 TGACTCGCGATGTATCACAA 57.068 45.000 10.36 0.00 0.00 3.33
4077 4815 4.215399 TCATATGACTCGCGATGTATCACA 59.785 41.667 10.36 0.85 0.00 3.58
4078 4816 4.723248 TCATATGACTCGCGATGTATCAC 58.277 43.478 10.36 0.00 0.00 3.06
4079 4817 5.567138 ATCATATGACTCGCGATGTATCA 57.433 39.130 10.36 12.00 0.00 2.15
4080 4818 6.967199 TGTTATCATATGACTCGCGATGTATC 59.033 38.462 10.36 6.05 0.00 2.24
4081 4819 6.852664 TGTTATCATATGACTCGCGATGTAT 58.147 36.000 10.36 6.81 0.00 2.29
4082 4820 6.249035 TGTTATCATATGACTCGCGATGTA 57.751 37.500 10.36 0.00 0.00 2.29
4083 4821 5.121221 TGTTATCATATGACTCGCGATGT 57.879 39.130 10.36 10.34 0.00 3.06
4084 4822 6.505420 CGATTGTTATCATATGACTCGCGATG 60.505 42.308 10.36 3.57 0.00 3.84
4085 4823 5.513141 CGATTGTTATCATATGACTCGCGAT 59.487 40.000 10.36 0.00 0.00 4.58
4086 4824 4.851558 CGATTGTTATCATATGACTCGCGA 59.148 41.667 9.26 9.26 0.00 5.87
4087 4825 4.617223 ACGATTGTTATCATATGACTCGCG 59.383 41.667 7.78 0.00 0.00 5.87
4088 4826 5.061064 GGACGATTGTTATCATATGACTCGC 59.939 44.000 7.78 0.00 0.00 5.03
4089 4827 6.149633 TGGACGATTGTTATCATATGACTCG 58.850 40.000 7.78 11.61 0.00 4.18
4090 4828 7.946655 TTGGACGATTGTTATCATATGACTC 57.053 36.000 7.78 2.34 0.00 3.36
4091 4829 8.908786 ATTTGGACGATTGTTATCATATGACT 57.091 30.769 7.78 0.39 0.00 3.41
4093 4831 8.935844 GCTATTTGGACGATTGTTATCATATGA 58.064 33.333 8.10 8.10 0.00 2.15
4094 4832 8.720562 TGCTATTTGGACGATTGTTATCATATG 58.279 33.333 0.00 0.00 0.00 1.78
4095 4833 8.846943 TGCTATTTGGACGATTGTTATCATAT 57.153 30.769 0.00 0.00 0.00 1.78
4096 4834 7.095229 GCTGCTATTTGGACGATTGTTATCATA 60.095 37.037 0.00 0.00 0.00 2.15
4097 4835 6.293626 GCTGCTATTTGGACGATTGTTATCAT 60.294 38.462 0.00 0.00 0.00 2.45
4098 4836 5.007626 GCTGCTATTTGGACGATTGTTATCA 59.992 40.000 0.00 0.00 0.00 2.15
4099 4837 5.007626 TGCTGCTATTTGGACGATTGTTATC 59.992 40.000 0.00 0.00 0.00 1.75
4100 4838 4.881273 TGCTGCTATTTGGACGATTGTTAT 59.119 37.500 0.00 0.00 0.00 1.89
4101 4839 4.257731 TGCTGCTATTTGGACGATTGTTA 58.742 39.130 0.00 0.00 0.00 2.41
4102 4840 3.081061 TGCTGCTATTTGGACGATTGTT 58.919 40.909 0.00 0.00 0.00 2.83
4103 4841 2.679837 CTGCTGCTATTTGGACGATTGT 59.320 45.455 0.00 0.00 0.00 2.71
4104 4842 2.540361 GCTGCTGCTATTTGGACGATTG 60.540 50.000 8.53 0.00 36.03 2.67
4105 4843 1.672881 GCTGCTGCTATTTGGACGATT 59.327 47.619 8.53 0.00 36.03 3.34
4106 4844 1.303309 GCTGCTGCTATTTGGACGAT 58.697 50.000 8.53 0.00 36.03 3.73
4107 4845 0.744414 GGCTGCTGCTATTTGGACGA 60.744 55.000 15.64 0.00 39.59 4.20
4108 4846 1.026182 TGGCTGCTGCTATTTGGACG 61.026 55.000 15.64 0.00 39.59 4.79
4109 4847 2.872408 TGGCTGCTGCTATTTGGAC 58.128 52.632 15.64 0.00 39.59 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.