Multiple sequence alignment - TraesCS7D01G230100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G230100 chr7D 100.000 4617 0 0 1 4617 191161420 191156804 0.000000e+00 8527.0
1 TraesCS7D01G230100 chr7D 82.012 517 87 3 84 594 186508575 186509091 7.090000e-118 435.0
2 TraesCS7D01G230100 chr7D 80.658 517 92 5 84 594 186790662 186791176 1.200000e-105 394.0
3 TraesCS7D01G230100 chr7A 92.937 3823 171 32 838 4601 199856823 199853041 0.000000e+00 5472.0
4 TraesCS7D01G230100 chr7A 92.857 98 6 1 735 832 577218192 577218288 1.730000e-29 141.0
5 TraesCS7D01G230100 chr7B 91.288 3432 191 34 861 4239 335926288 335922912 0.000000e+00 4582.0
6 TraesCS7D01G230100 chr7B 79.910 443 82 5 158 594 329774585 329775026 7.450000e-83 318.0
7 TraesCS7D01G230100 chr3B 82.018 456 75 7 81 533 144114910 144114459 9.370000e-102 381.0
8 TraesCS7D01G230100 chr3B 80.154 519 91 8 80 588 773384007 773384523 1.210000e-100 377.0
9 TraesCS7D01G230100 chr3B 85.714 105 9 5 561 661 417226258 417226156 6.320000e-19 106.0
10 TraesCS7D01G230100 chr5D 79.787 470 82 7 135 593 473379526 473379993 3.440000e-86 329.0
11 TraesCS7D01G230100 chr5D 91.045 67 6 0 569 635 404475115 404475049 1.770000e-14 91.6
12 TraesCS7D01G230100 chr1B 78.443 501 101 5 84 582 335969213 335968718 2.070000e-83 320.0
13 TraesCS7D01G230100 chr1B 79.859 427 81 5 84 507 354505826 354506250 1.610000e-79 307.0
14 TraesCS7D01G230100 chr1B 91.000 100 7 1 738 837 15778706 15778803 2.900000e-27 134.0
15 TraesCS7D01G230100 chr3A 78.269 520 87 14 79 588 714520990 714521493 1.250000e-80 311.0
16 TraesCS7D01G230100 chr4B 80.094 427 67 11 180 594 618071994 618072414 7.510000e-78 302.0
17 TraesCS7D01G230100 chr4B 90.291 103 8 2 732 832 465733986 465734088 2.900000e-27 134.0
18 TraesCS7D01G230100 chr4B 88.235 85 10 0 561 645 57270754 57270670 8.170000e-18 102.0
19 TraesCS7D01G230100 chr5A 75.514 486 101 7 103 582 693402259 693402732 6.010000e-54 222.0
20 TraesCS7D01G230100 chr5A 86.667 75 8 2 561 634 593740407 593740480 1.060000e-11 82.4
21 TraesCS7D01G230100 chr2D 87.143 140 17 1 83 221 100413541 100413402 1.720000e-34 158.0
22 TraesCS7D01G230100 chr2D 93.478 92 6 0 741 832 116829568 116829659 2.240000e-28 137.0
23 TraesCS7D01G230100 chr6B 93.684 95 4 1 738 832 212164542 212164634 1.730000e-29 141.0
24 TraesCS7D01G230100 chr5B 92.784 97 4 2 737 832 659593772 659593678 2.240000e-28 137.0
25 TraesCS7D01G230100 chr5B 91.753 97 5 2 737 832 612288903 612288809 1.040000e-26 132.0
26 TraesCS7D01G230100 chr4D 93.548 93 5 1 740 832 75795289 75795380 2.240000e-28 137.0
27 TraesCS7D01G230100 chr4D 82.857 105 10 8 561 661 73347415 73347515 2.290000e-13 87.9
28 TraesCS7D01G230100 chr2B 89.091 110 5 5 724 832 85698025 85697922 3.750000e-26 130.0
29 TraesCS7D01G230100 chr2A 89.157 83 9 0 570 652 494904683 494904601 2.270000e-18 104.0
30 TraesCS7D01G230100 chr1D 83.810 105 9 8 561 661 20945268 20945368 4.920000e-15 93.5
31 TraesCS7D01G230100 chr6D 89.706 68 7 0 576 643 155243579 155243646 2.290000e-13 87.9
32 TraesCS7D01G230100 chr6D 82.474 97 15 2 560 656 380807872 380807778 2.960000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G230100 chr7D 191156804 191161420 4616 True 8527 8527 100.000 1 4617 1 chr7D.!!$R1 4616
1 TraesCS7D01G230100 chr7D 186508575 186509091 516 False 435 435 82.012 84 594 1 chr7D.!!$F1 510
2 TraesCS7D01G230100 chr7D 186790662 186791176 514 False 394 394 80.658 84 594 1 chr7D.!!$F2 510
3 TraesCS7D01G230100 chr7A 199853041 199856823 3782 True 5472 5472 92.937 838 4601 1 chr7A.!!$R1 3763
4 TraesCS7D01G230100 chr7B 335922912 335926288 3376 True 4582 4582 91.288 861 4239 1 chr7B.!!$R1 3378
5 TraesCS7D01G230100 chr3B 773384007 773384523 516 False 377 377 80.154 80 588 1 chr3B.!!$F1 508
6 TraesCS7D01G230100 chr3A 714520990 714521493 503 False 311 311 78.269 79 588 1 chr3A.!!$F1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
138 139 0.172803 GATACCGTCCGTGCTCAAGT 59.827 55.0 0.00 0.0 0.00 3.16 F
829 854 0.321475 ATTAACGGAAAACCGGGCGA 60.321 50.0 6.32 0.0 37.53 5.54 F
830 855 0.533755 TTAACGGAAAACCGGGCGAA 60.534 50.0 6.32 0.0 37.53 4.70 F
900 925 0.665369 CCGTTTCGTTGCGACCTACT 60.665 55.0 0.00 0.0 34.89 2.57 F
2805 2889 0.472471 ACCGCTTCCAAGGACAAAGA 59.528 50.0 0.00 0.0 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1987 2018 1.449601 CCACCTTGCTCCGCGTATT 60.450 57.895 4.92 0.0 0.00 1.89 R
2735 2796 0.040058 TGGGATGCCTTGCTTGTGAT 59.960 50.000 4.35 0.0 0.00 3.06 R
2784 2862 0.472471 TTTGTCCTTGGAAGCGGTCT 59.528 50.000 0.00 0.0 0.00 3.85 R
2819 2903 2.621055 TGCTGTGCCGAAAAATTACTGT 59.379 40.909 0.00 0.0 0.00 3.55 R
3844 3941 0.040781 CCCGTGAAATGCGTTTTCGT 60.041 50.000 20.17 0.0 45.63 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.494045 GGGCTTCTCCAAAGAAAATCG 57.506 47.619 0.00 0.00 40.95 3.34
21 22 2.164422 GGGCTTCTCCAAAGAAAATCGG 59.836 50.000 0.00 0.00 40.95 4.18
22 23 3.081804 GGCTTCTCCAAAGAAAATCGGA 58.918 45.455 0.00 0.00 40.95 4.55
23 24 3.127721 GGCTTCTCCAAAGAAAATCGGAG 59.872 47.826 0.00 0.00 45.40 4.63
24 25 3.426829 GCTTCTCCAAAGAAAATCGGAGC 60.427 47.826 0.00 0.00 43.98 4.70
25 26 3.417069 TCTCCAAAGAAAATCGGAGCA 57.583 42.857 0.00 0.00 43.98 4.26
26 27 3.750371 TCTCCAAAGAAAATCGGAGCAA 58.250 40.909 0.00 0.00 43.98 3.91
27 28 4.141287 TCTCCAAAGAAAATCGGAGCAAA 58.859 39.130 0.00 0.00 43.98 3.68
28 29 4.582656 TCTCCAAAGAAAATCGGAGCAAAA 59.417 37.500 0.00 0.00 43.98 2.44
29 30 4.616953 TCCAAAGAAAATCGGAGCAAAAC 58.383 39.130 0.00 0.00 0.00 2.43
30 31 3.740832 CCAAAGAAAATCGGAGCAAAACC 59.259 43.478 0.00 0.00 0.00 3.27
31 32 3.660501 AAGAAAATCGGAGCAAAACCC 57.339 42.857 0.00 0.00 0.00 4.11
32 33 2.593026 AGAAAATCGGAGCAAAACCCA 58.407 42.857 0.00 0.00 0.00 4.51
33 34 2.962421 AGAAAATCGGAGCAAAACCCAA 59.038 40.909 0.00 0.00 0.00 4.12
34 35 3.386402 AGAAAATCGGAGCAAAACCCAAA 59.614 39.130 0.00 0.00 0.00 3.28
35 36 3.828875 AAATCGGAGCAAAACCCAAAA 57.171 38.095 0.00 0.00 0.00 2.44
36 37 3.828875 AATCGGAGCAAAACCCAAAAA 57.171 38.095 0.00 0.00 0.00 1.94
81 82 3.398406 CAAAAATTGGGGTGTTACAGGC 58.602 45.455 0.00 0.00 0.00 4.85
82 83 1.253100 AAATTGGGGTGTTACAGGCG 58.747 50.000 0.00 0.00 0.00 5.52
94 95 1.350071 TACAGGCGAACCCCAACTTA 58.650 50.000 0.00 0.00 36.11 2.24
99 100 1.017701 GCGAACCCCAACTTAGTCGG 61.018 60.000 0.00 0.00 0.00 4.79
121 122 1.592669 GCAGCGTGCCATCTACGAT 60.593 57.895 1.32 0.00 43.82 3.73
138 139 0.172803 GATACCGTCCGTGCTCAAGT 59.827 55.000 0.00 0.00 0.00 3.16
143 144 3.611674 TCCGTGCTCAAGTCGCCA 61.612 61.111 0.00 0.00 0.00 5.69
238 240 2.746803 GCGCCGCCGACAAACTATT 61.747 57.895 0.00 0.00 36.29 1.73
263 279 4.941609 CCGGTGGGATGAAGACAG 57.058 61.111 0.00 0.00 34.06 3.51
264 280 1.450312 CCGGTGGGATGAAGACAGC 60.450 63.158 0.00 0.00 34.06 4.40
265 281 4.208632 GGTGGGATGAAGACAGCG 57.791 61.111 0.00 0.00 32.75 5.18
266 282 1.296715 GGTGGGATGAAGACAGCGT 59.703 57.895 0.00 0.00 32.75 5.07
285 301 0.751277 TGGGCGCCATCATTTCGATT 60.751 50.000 30.85 0.00 29.21 3.34
342 358 3.582164 GGACTCCTCCAAGGATGAGTAT 58.418 50.000 21.87 5.82 44.81 2.12
349 365 1.138859 CCAAGGATGAGTATGGCACGA 59.861 52.381 0.00 0.00 0.00 4.35
352 368 2.388735 AGGATGAGTATGGCACGAGAA 58.611 47.619 0.00 0.00 0.00 2.87
379 395 1.228552 GCCTTGTGTCCCATGTGGT 60.229 57.895 0.00 0.00 34.77 4.16
380 396 0.827507 GCCTTGTGTCCCATGTGGTT 60.828 55.000 0.00 0.00 34.77 3.67
383 399 2.305928 CTTGTGTCCCATGTGGTTCAA 58.694 47.619 0.00 1.10 34.77 2.69
405 421 1.162698 CGTCTCCCGTGTTCTACTCA 58.837 55.000 0.00 0.00 0.00 3.41
438 454 1.270094 ACCGCAACTTCACTTCATCGA 60.270 47.619 0.00 0.00 0.00 3.59
469 485 1.976132 ATGCTCATGGAGACGGTGGG 61.976 60.000 0.00 0.00 0.00 4.61
480 496 3.760035 CGGTGGGTGGAGGACGAG 61.760 72.222 0.00 0.00 0.00 4.18
485 501 1.609794 GGGTGGAGGACGAGAAGGT 60.610 63.158 0.00 0.00 0.00 3.50
486 502 1.192803 GGGTGGAGGACGAGAAGGTT 61.193 60.000 0.00 0.00 0.00 3.50
488 504 1.897802 GGTGGAGGACGAGAAGGTTTA 59.102 52.381 0.00 0.00 0.00 2.01
493 509 2.824341 GAGGACGAGAAGGTTTAGGACA 59.176 50.000 0.00 0.00 0.00 4.02
523 541 0.834612 CCGCCATAGGTTTAGGGTCA 59.165 55.000 0.00 0.00 33.25 4.02
535 560 1.437397 TAGGGTCAGGTCGGGTTTTT 58.563 50.000 0.00 0.00 0.00 1.94
583 608 6.601741 AAATTCGTTGTGTTTGCATGAATT 57.398 29.167 0.00 0.00 36.38 2.17
589 614 5.403166 CGTTGTGTTTGCATGAATTTCATCT 59.597 36.000 8.95 0.00 34.28 2.90
594 619 5.697178 TGTTTGCATGAATTTCATCTGGTTG 59.303 36.000 8.95 0.44 34.28 3.77
595 620 3.852286 TGCATGAATTTCATCTGGTTGC 58.148 40.909 8.95 10.50 34.28 4.17
596 621 3.512329 TGCATGAATTTCATCTGGTTGCT 59.488 39.130 16.87 0.00 34.28 3.91
597 622 4.020928 TGCATGAATTTCATCTGGTTGCTT 60.021 37.500 16.87 0.00 34.28 3.91
598 623 4.565564 GCATGAATTTCATCTGGTTGCTTC 59.434 41.667 8.95 0.00 34.28 3.86
599 624 5.716094 CATGAATTTCATCTGGTTGCTTCA 58.284 37.500 8.95 0.00 34.28 3.02
600 625 5.988310 TGAATTTCATCTGGTTGCTTCAT 57.012 34.783 0.00 0.00 0.00 2.57
601 626 7.485810 CATGAATTTCATCTGGTTGCTTCATA 58.514 34.615 8.95 0.00 34.28 2.15
602 627 7.465353 TGAATTTCATCTGGTTGCTTCATAA 57.535 32.000 0.00 0.00 0.00 1.90
603 628 7.894708 TGAATTTCATCTGGTTGCTTCATAAA 58.105 30.769 0.00 0.00 0.00 1.40
604 629 8.030692 TGAATTTCATCTGGTTGCTTCATAAAG 58.969 33.333 0.00 0.00 35.47 1.85
605 630 6.899393 TTTCATCTGGTTGCTTCATAAAGT 57.101 33.333 0.00 0.00 34.79 2.66
606 631 5.885230 TCATCTGGTTGCTTCATAAAGTG 57.115 39.130 0.00 0.00 34.79 3.16
607 632 5.316167 TCATCTGGTTGCTTCATAAAGTGT 58.684 37.500 0.00 0.00 34.79 3.55
608 633 5.769662 TCATCTGGTTGCTTCATAAAGTGTT 59.230 36.000 0.00 0.00 34.79 3.32
609 634 6.265196 TCATCTGGTTGCTTCATAAAGTGTTT 59.735 34.615 0.00 0.00 34.79 2.83
610 635 5.830912 TCTGGTTGCTTCATAAAGTGTTTG 58.169 37.500 0.00 0.00 34.79 2.93
611 636 5.592282 TCTGGTTGCTTCATAAAGTGTTTGA 59.408 36.000 0.00 0.00 34.79 2.69
612 637 6.096141 TCTGGTTGCTTCATAAAGTGTTTGAA 59.904 34.615 0.00 0.00 34.79 2.69
613 638 6.634805 TGGTTGCTTCATAAAGTGTTTGAAA 58.365 32.000 0.00 0.00 34.79 2.69
614 639 7.271511 TGGTTGCTTCATAAAGTGTTTGAAAT 58.728 30.769 0.00 0.00 34.79 2.17
615 640 7.224362 TGGTTGCTTCATAAAGTGTTTGAAATG 59.776 33.333 0.00 0.00 34.79 2.32
616 641 7.224557 GGTTGCTTCATAAAGTGTTTGAAATGT 59.775 33.333 0.00 0.00 34.79 2.71
617 642 9.243637 GTTGCTTCATAAAGTGTTTGAAATGTA 57.756 29.630 0.00 0.00 34.79 2.29
618 643 9.979578 TTGCTTCATAAAGTGTTTGAAATGTAT 57.020 25.926 0.00 0.00 34.79 2.29
619 644 9.409312 TGCTTCATAAAGTGTTTGAAATGTATG 57.591 29.630 0.00 0.00 34.79 2.39
620 645 8.375465 GCTTCATAAAGTGTTTGAAATGTATGC 58.625 33.333 0.00 0.00 34.79 3.14
621 646 8.446489 TTCATAAAGTGTTTGAAATGTATGCG 57.554 30.769 0.00 0.00 0.00 4.73
622 647 7.026562 TCATAAAGTGTTTGAAATGTATGCGG 58.973 34.615 0.00 0.00 0.00 5.69
623 648 3.848272 AGTGTTTGAAATGTATGCGGG 57.152 42.857 0.00 0.00 0.00 6.13
624 649 2.094752 AGTGTTTGAAATGTATGCGGGC 60.095 45.455 0.00 0.00 0.00 6.13
625 650 1.889170 TGTTTGAAATGTATGCGGGCA 59.111 42.857 0.00 0.00 0.00 5.36
626 651 2.094803 TGTTTGAAATGTATGCGGGCAG 60.095 45.455 0.00 0.00 0.00 4.85
636 661 2.709475 GCGGGCAGCGTTGAATAG 59.291 61.111 2.38 0.00 35.41 1.73
637 662 2.709475 CGGGCAGCGTTGAATAGC 59.291 61.111 2.38 0.00 0.00 2.97
638 663 2.709475 GGGCAGCGTTGAATAGCG 59.291 61.111 2.38 0.00 38.61 4.26
639 664 2.709475 GGCAGCGTTGAATAGCGG 59.291 61.111 2.38 0.00 38.61 5.52
640 665 2.023320 GCAGCGTTGAATAGCGGC 59.977 61.111 2.38 5.27 45.83 6.53
641 666 2.709475 CAGCGTTGAATAGCGGCC 59.291 61.111 0.00 0.00 38.61 6.13
642 667 1.815421 CAGCGTTGAATAGCGGCCT 60.815 57.895 0.00 0.00 38.61 5.19
643 668 1.078426 AGCGTTGAATAGCGGCCTT 60.078 52.632 0.00 0.00 38.61 4.35
644 669 1.090052 AGCGTTGAATAGCGGCCTTC 61.090 55.000 0.00 0.00 38.61 3.46
645 670 2.014594 CGTTGAATAGCGGCCTTCC 58.985 57.895 0.00 0.00 0.00 3.46
646 671 0.742990 CGTTGAATAGCGGCCTTCCA 60.743 55.000 0.00 0.00 0.00 3.53
647 672 1.680338 GTTGAATAGCGGCCTTCCAT 58.320 50.000 0.00 0.00 0.00 3.41
648 673 2.805295 CGTTGAATAGCGGCCTTCCATA 60.805 50.000 0.00 0.00 0.00 2.74
649 674 3.412386 GTTGAATAGCGGCCTTCCATAT 58.588 45.455 0.00 0.00 0.00 1.78
650 675 3.334583 TGAATAGCGGCCTTCCATATC 57.665 47.619 0.00 0.00 0.00 1.63
651 676 2.906389 TGAATAGCGGCCTTCCATATCT 59.094 45.455 0.00 0.00 0.00 1.98
652 677 4.093743 TGAATAGCGGCCTTCCATATCTA 58.906 43.478 0.00 0.00 0.00 1.98
653 678 4.716784 TGAATAGCGGCCTTCCATATCTAT 59.283 41.667 0.00 0.00 0.00 1.98
654 679 4.679373 ATAGCGGCCTTCCATATCTATG 57.321 45.455 0.00 0.00 0.00 2.23
655 680 2.260822 AGCGGCCTTCCATATCTATGT 58.739 47.619 0.00 0.00 31.82 2.29
656 681 2.234908 AGCGGCCTTCCATATCTATGTC 59.765 50.000 0.00 0.00 31.82 3.06
657 682 2.881074 CGGCCTTCCATATCTATGTCG 58.119 52.381 0.00 0.00 31.82 4.35
658 683 2.622436 GGCCTTCCATATCTATGTCGC 58.378 52.381 0.00 0.00 31.82 5.19
659 684 2.263077 GCCTTCCATATCTATGTCGCG 58.737 52.381 0.00 0.00 31.82 5.87
660 685 2.881074 CCTTCCATATCTATGTCGCGG 58.119 52.381 6.13 0.00 31.82 6.46
661 686 2.417379 CCTTCCATATCTATGTCGCGGG 60.417 54.545 6.13 0.00 31.82 6.13
662 687 2.209690 TCCATATCTATGTCGCGGGA 57.790 50.000 6.13 0.00 31.82 5.14
663 688 2.092323 TCCATATCTATGTCGCGGGAG 58.908 52.381 6.13 0.00 31.82 4.30
664 689 2.092323 CCATATCTATGTCGCGGGAGA 58.908 52.381 6.13 0.75 31.82 3.71
665 690 2.492088 CCATATCTATGTCGCGGGAGAA 59.508 50.000 6.13 0.00 31.82 2.87
666 691 3.056821 CCATATCTATGTCGCGGGAGAAA 60.057 47.826 6.13 0.00 31.82 2.52
667 692 4.382040 CCATATCTATGTCGCGGGAGAAAT 60.382 45.833 6.13 0.00 31.82 2.17
668 693 3.753294 ATCTATGTCGCGGGAGAAATT 57.247 42.857 6.13 0.00 0.00 1.82
669 694 3.536956 TCTATGTCGCGGGAGAAATTT 57.463 42.857 6.13 0.00 0.00 1.82
670 695 3.869065 TCTATGTCGCGGGAGAAATTTT 58.131 40.909 6.13 0.00 0.00 1.82
671 696 5.013568 TCTATGTCGCGGGAGAAATTTTA 57.986 39.130 6.13 0.00 0.00 1.52
672 697 4.807304 TCTATGTCGCGGGAGAAATTTTAC 59.193 41.667 6.13 0.00 0.00 2.01
673 698 2.078392 TGTCGCGGGAGAAATTTTACC 58.922 47.619 6.13 0.00 0.00 2.85
674 699 1.061566 GTCGCGGGAGAAATTTTACCG 59.938 52.381 18.84 18.84 46.78 4.02
675 700 0.375803 CGCGGGAGAAATTTTACCGG 59.624 55.000 22.21 17.92 44.39 5.28
676 701 1.456296 GCGGGAGAAATTTTACCGGT 58.544 50.000 13.98 13.98 44.39 5.28
677 702 1.399440 GCGGGAGAAATTTTACCGGTC 59.601 52.381 12.40 0.00 44.39 4.79
678 703 1.662122 CGGGAGAAATTTTACCGGTCG 59.338 52.381 12.40 0.00 40.79 4.79
679 704 1.399440 GGGAGAAATTTTACCGGTCGC 59.601 52.381 12.40 0.00 0.00 5.19
680 705 1.399440 GGAGAAATTTTACCGGTCGCC 59.601 52.381 12.40 1.42 0.00 5.54
682 707 0.798159 GAAATTTTACCGGTCGCCGT 59.202 50.000 12.40 0.00 46.80 5.68
683 708 1.197492 GAAATTTTACCGGTCGCCGTT 59.803 47.619 12.40 0.47 46.80 4.44
684 709 1.237533 AATTTTACCGGTCGCCGTTT 58.762 45.000 12.40 0.00 46.80 3.60
685 710 2.091852 ATTTTACCGGTCGCCGTTTA 57.908 45.000 12.40 0.00 46.80 2.01
686 711 1.871080 TTTTACCGGTCGCCGTTTAA 58.129 45.000 12.40 0.00 46.80 1.52
687 712 1.427435 TTTACCGGTCGCCGTTTAAG 58.573 50.000 12.40 4.32 46.80 1.85
688 713 0.600557 TTACCGGTCGCCGTTTAAGA 59.399 50.000 12.40 0.00 46.80 2.10
689 714 0.817013 TACCGGTCGCCGTTTAAGAT 59.183 50.000 12.40 0.00 46.80 2.40
690 715 0.738412 ACCGGTCGCCGTTTAAGATG 60.738 55.000 0.00 2.53 46.80 2.90
691 716 1.347221 CGGTCGCCGTTTAAGATGC 59.653 57.895 9.69 0.00 42.73 3.91
692 717 1.719709 GGTCGCCGTTTAAGATGCC 59.280 57.895 0.00 0.00 0.00 4.40
693 718 0.743345 GGTCGCCGTTTAAGATGCCT 60.743 55.000 0.00 0.00 0.00 4.75
694 719 1.084289 GTCGCCGTTTAAGATGCCTT 58.916 50.000 0.00 0.00 36.43 4.35
695 720 1.062148 GTCGCCGTTTAAGATGCCTTC 59.938 52.381 0.00 0.00 33.94 3.46
696 721 0.377203 CGCCGTTTAAGATGCCTTCC 59.623 55.000 0.00 0.00 33.94 3.46
697 722 0.738975 GCCGTTTAAGATGCCTTCCC 59.261 55.000 0.00 0.00 33.94 3.97
698 723 1.953311 GCCGTTTAAGATGCCTTCCCA 60.953 52.381 0.00 0.00 33.94 4.37
699 724 2.654863 CCGTTTAAGATGCCTTCCCAT 58.345 47.619 0.00 0.00 33.94 4.00
700 725 3.023832 CCGTTTAAGATGCCTTCCCATT 58.976 45.455 0.00 0.00 33.94 3.16
701 726 4.204012 CCGTTTAAGATGCCTTCCCATTA 58.796 43.478 0.00 0.00 33.94 1.90
702 727 4.827284 CCGTTTAAGATGCCTTCCCATTAT 59.173 41.667 0.00 0.00 33.94 1.28
703 728 6.001460 CCGTTTAAGATGCCTTCCCATTATA 58.999 40.000 0.00 0.00 33.94 0.98
704 729 6.659242 CCGTTTAAGATGCCTTCCCATTATAT 59.341 38.462 0.00 0.00 33.94 0.86
705 730 7.176690 CCGTTTAAGATGCCTTCCCATTATATT 59.823 37.037 0.00 0.00 33.94 1.28
706 731 8.237267 CGTTTAAGATGCCTTCCCATTATATTC 58.763 37.037 0.00 0.00 33.94 1.75
707 732 9.077885 GTTTAAGATGCCTTCCCATTATATTCA 57.922 33.333 0.00 0.00 33.94 2.57
708 733 8.868522 TTAAGATGCCTTCCCATTATATTCAG 57.131 34.615 0.00 0.00 33.94 3.02
709 734 6.460103 AGATGCCTTCCCATTATATTCAGT 57.540 37.500 0.00 0.00 0.00 3.41
710 735 6.479884 AGATGCCTTCCCATTATATTCAGTC 58.520 40.000 0.00 0.00 0.00 3.51
711 736 5.645056 TGCCTTCCCATTATATTCAGTCA 57.355 39.130 0.00 0.00 0.00 3.41
712 737 5.624159 TGCCTTCCCATTATATTCAGTCAG 58.376 41.667 0.00 0.00 0.00 3.51
713 738 5.132648 TGCCTTCCCATTATATTCAGTCAGT 59.867 40.000 0.00 0.00 0.00 3.41
714 739 6.064717 GCCTTCCCATTATATTCAGTCAGTT 58.935 40.000 0.00 0.00 0.00 3.16
715 740 6.205658 GCCTTCCCATTATATTCAGTCAGTTC 59.794 42.308 0.00 0.00 0.00 3.01
716 741 6.425114 CCTTCCCATTATATTCAGTCAGTTCG 59.575 42.308 0.00 0.00 0.00 3.95
717 742 6.479972 TCCCATTATATTCAGTCAGTTCGT 57.520 37.500 0.00 0.00 0.00 3.85
718 743 7.591421 TCCCATTATATTCAGTCAGTTCGTA 57.409 36.000 0.00 0.00 0.00 3.43
719 744 8.190326 TCCCATTATATTCAGTCAGTTCGTAT 57.810 34.615 0.00 0.00 0.00 3.06
720 745 8.647796 TCCCATTATATTCAGTCAGTTCGTATT 58.352 33.333 0.00 0.00 0.00 1.89
721 746 8.926710 CCCATTATATTCAGTCAGTTCGTATTC 58.073 37.037 0.00 0.00 0.00 1.75
722 747 8.926710 CCATTATATTCAGTCAGTTCGTATTCC 58.073 37.037 0.00 0.00 0.00 3.01
723 748 9.476202 CATTATATTCAGTCAGTTCGTATTCCA 57.524 33.333 0.00 0.00 0.00 3.53
725 750 9.692749 TTATATTCAGTCAGTTCGTATTCCATC 57.307 33.333 0.00 0.00 0.00 3.51
726 751 4.028852 TCAGTCAGTTCGTATTCCATCG 57.971 45.455 0.00 0.00 0.00 3.84
727 752 2.535984 CAGTCAGTTCGTATTCCATCGC 59.464 50.000 0.00 0.00 0.00 4.58
728 753 1.859080 GTCAGTTCGTATTCCATCGCC 59.141 52.381 0.00 0.00 0.00 5.54
729 754 1.754803 TCAGTTCGTATTCCATCGCCT 59.245 47.619 0.00 0.00 0.00 5.52
730 755 2.128035 CAGTTCGTATTCCATCGCCTC 58.872 52.381 0.00 0.00 0.00 4.70
731 756 1.754803 AGTTCGTATTCCATCGCCTCA 59.245 47.619 0.00 0.00 0.00 3.86
732 757 2.128035 GTTCGTATTCCATCGCCTCAG 58.872 52.381 0.00 0.00 0.00 3.35
733 758 1.399714 TCGTATTCCATCGCCTCAGT 58.600 50.000 0.00 0.00 0.00 3.41
734 759 1.754803 TCGTATTCCATCGCCTCAGTT 59.245 47.619 0.00 0.00 0.00 3.16
735 760 2.128035 CGTATTCCATCGCCTCAGTTC 58.872 52.381 0.00 0.00 0.00 3.01
736 761 2.223829 CGTATTCCATCGCCTCAGTTCT 60.224 50.000 0.00 0.00 0.00 3.01
737 762 3.738281 CGTATTCCATCGCCTCAGTTCTT 60.738 47.826 0.00 0.00 0.00 2.52
738 763 4.499188 CGTATTCCATCGCCTCAGTTCTTA 60.499 45.833 0.00 0.00 0.00 2.10
739 764 3.973206 TTCCATCGCCTCAGTTCTTAA 57.027 42.857 0.00 0.00 0.00 1.85
740 765 4.487714 TTCCATCGCCTCAGTTCTTAAT 57.512 40.909 0.00 0.00 0.00 1.40
741 766 4.487714 TCCATCGCCTCAGTTCTTAATT 57.512 40.909 0.00 0.00 0.00 1.40
742 767 4.843728 TCCATCGCCTCAGTTCTTAATTT 58.156 39.130 0.00 0.00 0.00 1.82
743 768 5.253330 TCCATCGCCTCAGTTCTTAATTTT 58.747 37.500 0.00 0.00 0.00 1.82
744 769 5.710099 TCCATCGCCTCAGTTCTTAATTTTT 59.290 36.000 0.00 0.00 0.00 1.94
768 793 9.625747 TTTTTAGAAAAATGGAGGCAAAAGATT 57.374 25.926 0.00 0.00 33.29 2.40
769 794 9.625747 TTTTAGAAAAATGGAGGCAAAAGATTT 57.374 25.926 0.00 0.00 0.00 2.17
770 795 8.606040 TTAGAAAAATGGAGGCAAAAGATTTG 57.394 30.769 0.00 0.00 0.00 2.32
771 796 5.471116 AGAAAAATGGAGGCAAAAGATTTGC 59.529 36.000 17.18 17.18 44.22 3.68
783 808 7.985634 GCAAAAGATTTGCCTTATCGATTAA 57.014 32.000 15.12 0.00 39.38 1.40
784 809 8.579682 GCAAAAGATTTGCCTTATCGATTAAT 57.420 30.769 15.12 0.00 39.38 1.40
785 810 9.034544 GCAAAAGATTTGCCTTATCGATTAATT 57.965 29.630 15.12 0.00 39.38 1.40
803 828 9.657121 CGATTAATTAAGAAGAAGAGAATTGCC 57.343 33.333 3.94 0.00 0.00 4.52
804 829 9.958234 GATTAATTAAGAAGAAGAGAATTGCCC 57.042 33.333 3.94 0.00 0.00 5.36
805 830 6.442513 AATTAAGAAGAAGAGAATTGCCCG 57.557 37.500 0.00 0.00 0.00 6.13
806 831 2.409948 AGAAGAAGAGAATTGCCCGG 57.590 50.000 0.00 0.00 0.00 5.73
807 832 1.630878 AGAAGAAGAGAATTGCCCGGT 59.369 47.619 0.00 0.00 0.00 5.28
808 833 2.040412 AGAAGAAGAGAATTGCCCGGTT 59.960 45.455 0.00 0.00 0.00 4.44
809 834 3.263425 AGAAGAAGAGAATTGCCCGGTTA 59.737 43.478 0.00 0.00 0.00 2.85
810 835 3.713826 AGAAGAGAATTGCCCGGTTAA 57.286 42.857 0.00 0.00 0.00 2.01
811 836 4.236527 AGAAGAGAATTGCCCGGTTAAT 57.763 40.909 0.00 0.00 0.00 1.40
812 837 4.600062 AGAAGAGAATTGCCCGGTTAATT 58.400 39.130 11.61 11.61 0.00 1.40
813 838 5.751586 AGAAGAGAATTGCCCGGTTAATTA 58.248 37.500 11.73 0.00 0.00 1.40
814 839 6.184789 AGAAGAGAATTGCCCGGTTAATTAA 58.815 36.000 11.73 0.00 0.00 1.40
815 840 5.830000 AGAGAATTGCCCGGTTAATTAAC 57.170 39.130 18.30 18.30 35.50 2.01
816 841 4.334481 AGAGAATTGCCCGGTTAATTAACG 59.666 41.667 19.48 14.84 37.07 3.18
817 842 3.379057 AGAATTGCCCGGTTAATTAACGG 59.621 43.478 22.47 22.47 37.07 4.44
818 843 2.486472 TTGCCCGGTTAATTAACGGA 57.514 45.000 28.04 12.76 38.36 4.69
819 844 2.486472 TGCCCGGTTAATTAACGGAA 57.514 45.000 28.04 15.41 38.36 4.30
820 845 2.787994 TGCCCGGTTAATTAACGGAAA 58.212 42.857 28.04 17.20 38.36 3.13
821 846 3.152341 TGCCCGGTTAATTAACGGAAAA 58.848 40.909 28.04 14.86 38.36 2.29
822 847 3.057666 TGCCCGGTTAATTAACGGAAAAC 60.058 43.478 28.04 17.54 38.36 2.43
823 848 3.673052 GCCCGGTTAATTAACGGAAAACC 60.673 47.826 28.04 13.74 38.36 3.27
826 851 4.095410 GGTTAATTAACGGAAAACCGGG 57.905 45.455 19.48 0.00 37.07 5.73
827 852 3.500982 GTTAATTAACGGAAAACCGGGC 58.499 45.455 12.39 0.00 37.53 6.13
828 853 0.522626 AATTAACGGAAAACCGGGCG 59.477 50.000 6.32 0.00 37.53 6.13
829 854 0.321475 ATTAACGGAAAACCGGGCGA 60.321 50.000 6.32 0.00 37.53 5.54
830 855 0.533755 TTAACGGAAAACCGGGCGAA 60.534 50.000 6.32 0.00 37.53 4.70
831 856 0.533755 TAACGGAAAACCGGGCGAAA 60.534 50.000 6.32 0.00 37.53 3.46
832 857 1.788067 AACGGAAAACCGGGCGAAAG 61.788 55.000 6.32 0.00 37.53 2.62
900 925 0.665369 CCGTTTCGTTGCGACCTACT 60.665 55.000 0.00 0.00 34.89 2.57
901 926 1.401409 CCGTTTCGTTGCGACCTACTA 60.401 52.381 0.00 0.00 34.89 1.82
902 927 1.645751 CGTTTCGTTGCGACCTACTAC 59.354 52.381 0.00 0.00 34.89 2.73
903 928 2.664916 GTTTCGTTGCGACCTACTACA 58.335 47.619 0.00 0.00 34.89 2.74
917 942 1.329256 ACTACACTCCACTCGCTGTT 58.671 50.000 0.00 0.00 0.00 3.16
961 986 2.365635 ACTACCCTGCCGGCTCAT 60.366 61.111 29.70 13.04 33.26 2.90
962 987 2.423446 CTACCCTGCCGGCTCATC 59.577 66.667 29.70 0.00 33.26 2.92
1560 1588 2.067365 TCTGCTACTGCGGGATAAGA 57.933 50.000 0.00 0.00 45.25 2.10
1743 1771 8.089115 AGAAAAAGAACTGCAGTACTATGTTC 57.911 34.615 22.01 17.95 37.76 3.18
1834 1862 7.945134 ACTTAAACTGTGAGCTTTGATGAATT 58.055 30.769 0.00 0.00 0.00 2.17
2107 2159 1.640428 TACGCGAGGCAAATGAAGAG 58.360 50.000 15.93 0.00 0.00 2.85
2130 2182 3.148279 GCCCCGATCACGAGGAGT 61.148 66.667 0.00 0.00 39.79 3.85
2183 2235 1.933853 GCAAGTGCACTTATCGGTAGG 59.066 52.381 30.67 16.94 41.59 3.18
2400 2457 0.877071 ACTGCATGCCTGAACTTTCG 59.123 50.000 16.68 0.00 0.00 3.46
2446 2503 2.768253 TGGGAGCAAGAGTACATGTG 57.232 50.000 9.11 0.00 0.00 3.21
2450 2508 1.391485 GAGCAAGAGTACATGTGCACG 59.609 52.381 16.62 0.65 39.50 5.34
2453 2511 1.800586 CAAGAGTACATGTGCACGCTT 59.199 47.619 16.62 13.38 35.53 4.68
2455 2513 3.313012 AGAGTACATGTGCACGCTTTA 57.687 42.857 16.62 0.00 0.00 1.85
2461 2519 2.295909 ACATGTGCACGCTTTACCATTT 59.704 40.909 13.13 0.00 0.00 2.32
2462 2520 3.243704 ACATGTGCACGCTTTACCATTTT 60.244 39.130 13.13 0.00 0.00 1.82
2463 2521 2.736978 TGTGCACGCTTTACCATTTTG 58.263 42.857 13.13 0.00 0.00 2.44
2464 2522 2.099921 TGTGCACGCTTTACCATTTTGT 59.900 40.909 13.13 0.00 0.00 2.83
2487 2548 9.958234 TTGTAGTAATAAAACCGTTAAAAACCC 57.042 29.630 0.00 0.00 0.00 4.11
2488 2549 9.348476 TGTAGTAATAAAACCGTTAAAAACCCT 57.652 29.630 0.00 0.00 0.00 4.34
2630 2691 3.072944 GAGCATGTAGGGAGCATGATTC 58.927 50.000 9.17 0.00 42.14 2.52
2669 2730 4.290942 CCTACTCCACTCCACTCCTTTAT 58.709 47.826 0.00 0.00 0.00 1.40
2780 2858 3.084039 AGCCGAATCATTTGCTTTCTGA 58.916 40.909 0.00 0.00 0.00 3.27
2782 2860 3.855950 GCCGAATCATTTGCTTTCTGAAG 59.144 43.478 0.00 0.00 35.92 3.02
2805 2889 0.472471 ACCGCTTCCAAGGACAAAGA 59.528 50.000 0.00 0.00 0.00 2.52
2819 2903 6.478512 AGGACAAAGAATTGGTTGCTTTAA 57.521 33.333 0.00 0.00 41.01 1.52
2820 2904 6.280643 AGGACAAAGAATTGGTTGCTTTAAC 58.719 36.000 0.00 0.00 41.01 2.01
2855 2939 3.056891 GCACAGCAAGCCCAGTAATTTAA 60.057 43.478 0.00 0.00 0.00 1.52
2889 2977 1.134670 GGGAAATGTCTCCGTCTGAGG 60.135 57.143 0.00 0.00 41.76 3.86
3038 3126 1.134220 TGTGAGAGCGAGGGTTTTGTT 60.134 47.619 0.00 0.00 0.00 2.83
3072 3168 6.103353 TCAACTGGAATCTCTATCCCTCTCTA 59.897 42.308 0.00 0.00 36.04 2.43
3073 3169 5.887754 ACTGGAATCTCTATCCCTCTCTAC 58.112 45.833 0.00 0.00 36.04 2.59
3074 3170 4.912586 TGGAATCTCTATCCCTCTCTACG 58.087 47.826 0.00 0.00 36.04 3.51
3075 3171 4.263550 TGGAATCTCTATCCCTCTCTACGG 60.264 50.000 0.00 0.00 36.04 4.02
3076 3172 4.266714 GAATCTCTATCCCTCTCTACGGG 58.733 52.174 0.00 0.00 43.38 5.28
3077 3173 1.986631 TCTCTATCCCTCTCTACGGGG 59.013 57.143 0.00 0.00 42.23 5.73
3078 3174 0.404812 TCTATCCCTCTCTACGGGGC 59.595 60.000 0.00 0.00 42.23 5.80
3145 3241 2.234908 GAGCTACACAGTTCCTGGACAT 59.765 50.000 0.00 0.00 35.51 3.06
3191 3287 0.456221 ATTACTGTCGCTCACTCCCG 59.544 55.000 0.00 0.00 0.00 5.14
3261 3357 2.158740 TCGTCCCTTTTTGTGTGGATGA 60.159 45.455 0.00 0.00 39.88 2.92
3321 3417 4.323477 CACGTCGGGGAAGGCCAA 62.323 66.667 5.01 0.00 35.15 4.52
3529 3625 0.668535 TCGCATCGTCGGAGATCAAT 59.331 50.000 0.00 0.00 40.67 2.57
3822 3919 0.522705 GTGAGCGTGCATTGCATCTG 60.523 55.000 15.49 9.15 41.91 2.90
3844 3941 6.874664 TCTGCATTTAAACAACATCCTACGTA 59.125 34.615 0.00 0.00 0.00 3.57
3845 3942 6.833839 TGCATTTAAACAACATCCTACGTAC 58.166 36.000 0.00 0.00 0.00 3.67
3863 3970 0.040781 ACGAAAACGCATTTCACGGG 60.041 50.000 12.92 0.00 46.42 5.28
3926 4033 1.888436 CGTCCTTGGCTACTGGCTGA 61.888 60.000 0.00 0.00 41.46 4.26
3992 4113 9.569167 GAAACAGCTCCCTACATAAATAAAAAC 57.431 33.333 0.00 0.00 0.00 2.43
4034 4156 7.492669 AGTCCATGTATGATCTAGTTTCAAACG 59.507 37.037 0.00 0.00 36.23 3.60
4035 4157 6.257849 TCCATGTATGATCTAGTTTCAAACGC 59.742 38.462 0.00 0.00 36.23 4.84
4069 4191 9.199184 CGAGAAACACAATGATAAAACTATTCG 57.801 33.333 0.00 0.00 0.00 3.34
4158 4281 5.049405 CGAAAAACACTAGTGATCCAGCTTT 60.049 40.000 29.30 13.71 0.00 3.51
4304 4427 4.339247 GCATCCCTGCTTCAAGCTATTTAA 59.661 41.667 11.57 0.00 45.32 1.52
4308 4431 6.924111 TCCCTGCTTCAAGCTATTTAAAAAG 58.076 36.000 11.57 0.00 42.97 2.27
4319 4442 9.103861 CAAGCTATTTAAAAAGGAAAAACACCA 57.896 29.630 0.00 0.00 0.00 4.17
4327 4450 7.841915 AAAAAGGAAAAACACCAAGTACATG 57.158 32.000 0.00 0.00 0.00 3.21
4530 4663 9.480053 AAAATTCACATAGGAAAACACATGAAG 57.520 29.630 0.00 0.00 0.00 3.02
4535 4668 5.473504 ACATAGGAAAACACATGAAGGTCAC 59.526 40.000 0.00 0.00 0.00 3.67
4543 4676 2.733552 CACATGAAGGTCACAGAAGACG 59.266 50.000 0.00 0.00 39.42 4.18
4544 4677 2.289072 ACATGAAGGTCACAGAAGACGG 60.289 50.000 0.00 0.00 39.42 4.79
4591 4724 9.946165 AAAGACGAAAAATAAGAAAATTCTCGT 57.054 25.926 0.00 0.63 38.75 4.18
4606 4739 4.579454 TTCTCGTCGAGAAGAAAAAGGA 57.421 40.909 29.21 8.32 42.78 3.36
4607 4740 4.579454 TCTCGTCGAGAAGAAAAAGGAA 57.421 40.909 22.33 0.00 35.59 3.36
4608 4741 4.296690 TCTCGTCGAGAAGAAAAAGGAAC 58.703 43.478 22.33 0.00 35.59 3.62
4609 4742 4.037684 TCTCGTCGAGAAGAAAAAGGAACT 59.962 41.667 22.33 0.00 36.30 3.01
4610 4743 5.451520 TCTCGTCGAGAAGAAAAAGGAACTT 60.452 40.000 22.33 0.00 43.20 2.66
4611 4744 7.224000 TCTCGTCGAGAAGAAAAAGGAACTTC 61.224 42.308 22.33 0.00 41.45 3.01
4612 4745 9.494766 TCTCGTCGAGAAGAAAAAGGAACTTCA 62.495 40.741 22.33 0.00 41.45 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.164422 CCGATTTTCTTTGGAGAAGCCC 59.836 50.000 0.00 0.00 42.55 5.19
4 5 3.750371 TGCTCCGATTTTCTTTGGAGAA 58.250 40.909 11.12 0.00 46.50 2.87
5 6 3.417069 TGCTCCGATTTTCTTTGGAGA 57.583 42.857 11.12 0.00 46.50 3.71
6 7 4.503741 TTTGCTCCGATTTTCTTTGGAG 57.496 40.909 2.78 2.78 46.37 3.86
7 8 4.500716 GGTTTTGCTCCGATTTTCTTTGGA 60.501 41.667 0.00 0.00 0.00 3.53
8 9 3.740832 GGTTTTGCTCCGATTTTCTTTGG 59.259 43.478 0.00 0.00 0.00 3.28
9 10 3.740832 GGGTTTTGCTCCGATTTTCTTTG 59.259 43.478 0.00 0.00 0.00 2.77
10 11 3.386402 TGGGTTTTGCTCCGATTTTCTTT 59.614 39.130 0.00 0.00 0.00 2.52
11 12 2.962421 TGGGTTTTGCTCCGATTTTCTT 59.038 40.909 0.00 0.00 0.00 2.52
12 13 2.593026 TGGGTTTTGCTCCGATTTTCT 58.407 42.857 0.00 0.00 0.00 2.52
13 14 3.378911 TTGGGTTTTGCTCCGATTTTC 57.621 42.857 0.00 0.00 0.00 2.29
14 15 3.828875 TTTGGGTTTTGCTCCGATTTT 57.171 38.095 0.00 0.00 0.00 1.82
15 16 3.828875 TTTTGGGTTTTGCTCCGATTT 57.171 38.095 0.00 0.00 0.00 2.17
16 17 3.828875 TTTTTGGGTTTTGCTCCGATT 57.171 38.095 0.00 0.00 0.00 3.34
47 48 5.850557 CCAATTTTTGGCCCTTTCTTTTT 57.149 34.783 0.00 0.00 45.17 1.94
60 61 3.398406 GCCTGTAACACCCCAATTTTTG 58.602 45.455 0.00 0.00 0.00 2.44
61 62 2.036604 CGCCTGTAACACCCCAATTTTT 59.963 45.455 0.00 0.00 0.00 1.94
62 63 1.616374 CGCCTGTAACACCCCAATTTT 59.384 47.619 0.00 0.00 0.00 1.82
63 64 1.202952 TCGCCTGTAACACCCCAATTT 60.203 47.619 0.00 0.00 0.00 1.82
64 65 0.402504 TCGCCTGTAACACCCCAATT 59.597 50.000 0.00 0.00 0.00 2.32
65 66 0.402504 TTCGCCTGTAACACCCCAAT 59.597 50.000 0.00 0.00 0.00 3.16
66 67 0.535553 GTTCGCCTGTAACACCCCAA 60.536 55.000 0.00 0.00 0.00 4.12
67 68 1.071814 GTTCGCCTGTAACACCCCA 59.928 57.895 0.00 0.00 0.00 4.96
68 69 1.673337 GGTTCGCCTGTAACACCCC 60.673 63.158 0.00 0.00 0.00 4.95
69 70 1.673337 GGGTTCGCCTGTAACACCC 60.673 63.158 0.00 0.00 40.52 4.61
70 71 1.673337 GGGGTTCGCCTGTAACACC 60.673 63.158 0.00 0.00 42.87 4.16
71 72 0.535553 TTGGGGTTCGCCTGTAACAC 60.536 55.000 7.39 0.00 37.45 3.32
72 73 0.535553 GTTGGGGTTCGCCTGTAACA 60.536 55.000 7.39 0.00 37.45 2.41
73 74 0.250597 AGTTGGGGTTCGCCTGTAAC 60.251 55.000 7.39 4.05 37.45 2.50
74 75 0.475044 AAGTTGGGGTTCGCCTGTAA 59.525 50.000 7.39 0.00 37.45 2.41
75 76 1.276989 CTAAGTTGGGGTTCGCCTGTA 59.723 52.381 7.39 0.00 37.45 2.74
76 77 0.036306 CTAAGTTGGGGTTCGCCTGT 59.964 55.000 7.39 0.00 37.45 4.00
77 78 0.036306 ACTAAGTTGGGGTTCGCCTG 59.964 55.000 7.39 0.00 37.45 4.85
78 79 0.323957 GACTAAGTTGGGGTTCGCCT 59.676 55.000 7.39 0.00 37.45 5.52
79 80 1.017701 CGACTAAGTTGGGGTTCGCC 61.018 60.000 0.00 0.00 0.00 5.54
80 81 1.017701 CCGACTAAGTTGGGGTTCGC 61.018 60.000 0.00 0.00 33.62 4.70
81 82 3.132863 CCGACTAAGTTGGGGTTCG 57.867 57.895 0.00 0.00 33.62 3.95
99 100 3.094062 TAGATGGCACGCTGCTCCC 62.094 63.158 9.31 0.00 44.28 4.30
121 122 1.582968 GACTTGAGCACGGACGGTA 59.417 57.895 0.00 0.00 0.00 4.02
138 139 4.069232 CTTCCTGGCGAGTGGCGA 62.069 66.667 0.00 0.00 44.92 5.54
143 144 4.400961 GGCTGCTTCCTGGCGAGT 62.401 66.667 0.00 0.00 34.52 4.18
166 167 2.110967 CGCCTGGAGATGCACCTTG 61.111 63.158 0.00 0.00 0.00 3.61
167 168 1.630126 ATCGCCTGGAGATGCACCTT 61.630 55.000 12.37 0.00 0.00 3.50
171 172 2.418777 CGATCGCCTGGAGATGCA 59.581 61.111 17.98 0.00 0.00 3.96
231 233 2.512974 CGGGCCGCCGAATAGTTT 60.513 61.111 15.42 0.00 34.88 2.66
248 264 1.021390 CACGCTGTCTTCATCCCACC 61.021 60.000 0.00 0.00 0.00 4.61
253 269 2.456119 CGCCCACGCTGTCTTCATC 61.456 63.158 0.00 0.00 0.00 2.92
254 270 2.434884 CGCCCACGCTGTCTTCAT 60.435 61.111 0.00 0.00 0.00 2.57
264 280 2.408835 GAAATGATGGCGCCCACG 59.591 61.111 26.77 0.00 44.07 4.94
265 281 1.447317 ATCGAAATGATGGCGCCCAC 61.447 55.000 26.77 18.36 35.80 4.61
266 282 0.751277 AATCGAAATGATGGCGCCCA 60.751 50.000 26.77 16.76 37.39 5.36
275 291 3.334691 GTGAGGTCCACAATCGAAATGA 58.665 45.455 8.40 0.00 45.03 2.57
308 324 3.282745 GAGTCCGCGCCTTGTCTGA 62.283 63.158 0.00 0.00 0.00 3.27
405 421 4.208686 GCGGTCTCCGGCGAGAAT 62.209 66.667 9.30 0.00 46.74 2.40
438 454 3.507622 TCCATGAGCATCGACGATAAGAT 59.492 43.478 10.57 0.00 38.61 2.40
447 463 1.037579 ACCGTCTCCATGAGCATCGA 61.038 55.000 0.00 0.00 38.61 3.59
450 466 1.524002 CCACCGTCTCCATGAGCAT 59.476 57.895 0.00 0.00 0.00 3.79
469 485 2.094130 CCTAAACCTTCTCGTCCTCCAC 60.094 54.545 0.00 0.00 0.00 4.02
480 496 0.675837 GGCCGGTGTCCTAAACCTTC 60.676 60.000 1.90 0.00 35.39 3.46
485 501 4.397832 GGCGGCCGGTGTCCTAAA 62.398 66.667 29.38 0.00 0.00 1.85
507 523 2.102588 CGACCTGACCCTAAACCTATGG 59.897 54.545 0.00 0.00 0.00 2.74
508 524 2.102588 CCGACCTGACCCTAAACCTATG 59.897 54.545 0.00 0.00 0.00 2.23
558 583 6.414408 TTCATGCAAACACAACGAATTTTT 57.586 29.167 0.00 0.00 0.00 1.94
564 589 4.676546 TGAAATTCATGCAAACACAACGA 58.323 34.783 0.00 0.00 0.00 3.85
567 592 5.697178 CCAGATGAAATTCATGCAAACACAA 59.303 36.000 13.82 0.00 37.20 3.33
568 593 5.221481 ACCAGATGAAATTCATGCAAACACA 60.221 36.000 13.82 0.00 37.20 3.72
583 608 5.769662 ACACTTTATGAAGCAACCAGATGAA 59.230 36.000 0.00 0.00 36.29 2.57
589 614 5.843673 TCAAACACTTTATGAAGCAACCA 57.156 34.783 0.00 0.00 36.29 3.67
594 619 8.375465 GCATACATTTCAAACACTTTATGAAGC 58.625 33.333 0.00 0.00 36.29 3.86
595 620 8.577939 CGCATACATTTCAAACACTTTATGAAG 58.422 33.333 0.00 0.00 34.80 3.02
596 621 7.540400 CCGCATACATTTCAAACACTTTATGAA 59.460 33.333 0.00 0.00 0.00 2.57
597 622 7.026562 CCGCATACATTTCAAACACTTTATGA 58.973 34.615 0.00 0.00 0.00 2.15
598 623 6.253298 CCCGCATACATTTCAAACACTTTATG 59.747 38.462 0.00 0.00 0.00 1.90
599 624 6.329496 CCCGCATACATTTCAAACACTTTAT 58.671 36.000 0.00 0.00 0.00 1.40
600 625 5.704888 CCCGCATACATTTCAAACACTTTA 58.295 37.500 0.00 0.00 0.00 1.85
601 626 4.555262 CCCGCATACATTTCAAACACTTT 58.445 39.130 0.00 0.00 0.00 2.66
602 627 3.613910 GCCCGCATACATTTCAAACACTT 60.614 43.478 0.00 0.00 0.00 3.16
603 628 2.094752 GCCCGCATACATTTCAAACACT 60.095 45.455 0.00 0.00 0.00 3.55
604 629 2.258755 GCCCGCATACATTTCAAACAC 58.741 47.619 0.00 0.00 0.00 3.32
605 630 1.889170 TGCCCGCATACATTTCAAACA 59.111 42.857 0.00 0.00 0.00 2.83
606 631 2.529151 CTGCCCGCATACATTTCAAAC 58.471 47.619 0.00 0.00 0.00 2.93
607 632 1.135141 GCTGCCCGCATACATTTCAAA 60.135 47.619 0.00 0.00 38.92 2.69
608 633 0.455410 GCTGCCCGCATACATTTCAA 59.545 50.000 0.00 0.00 38.92 2.69
609 634 1.713937 CGCTGCCCGCATACATTTCA 61.714 55.000 0.00 0.00 39.08 2.69
610 635 1.009675 CGCTGCCCGCATACATTTC 60.010 57.895 0.00 0.00 39.08 2.17
611 636 1.312371 AACGCTGCCCGCATACATTT 61.312 50.000 0.00 0.00 41.76 2.32
612 637 1.748879 AACGCTGCCCGCATACATT 60.749 52.632 0.00 0.00 41.76 2.71
613 638 2.124736 AACGCTGCCCGCATACAT 60.125 55.556 0.00 0.00 41.76 2.29
614 639 3.124270 CAACGCTGCCCGCATACA 61.124 61.111 0.00 0.00 41.76 2.29
615 640 1.714899 ATTCAACGCTGCCCGCATAC 61.715 55.000 0.00 0.00 41.76 2.39
616 641 0.179070 TATTCAACGCTGCCCGCATA 60.179 50.000 0.00 0.00 41.76 3.14
617 642 1.439353 CTATTCAACGCTGCCCGCAT 61.439 55.000 0.00 0.00 41.76 4.73
618 643 2.046796 TATTCAACGCTGCCCGCA 60.047 55.556 0.00 0.00 41.76 5.69
619 644 2.709475 CTATTCAACGCTGCCCGC 59.291 61.111 0.00 0.00 41.76 6.13
620 645 2.709475 GCTATTCAACGCTGCCCG 59.291 61.111 0.00 0.00 44.21 6.13
621 646 2.709475 CGCTATTCAACGCTGCCC 59.291 61.111 0.00 0.00 0.00 5.36
622 647 2.709475 CCGCTATTCAACGCTGCC 59.291 61.111 0.00 0.00 0.00 4.85
623 648 2.023320 GCCGCTATTCAACGCTGC 59.977 61.111 0.00 0.00 0.00 5.25
624 649 1.369091 AAGGCCGCTATTCAACGCTG 61.369 55.000 0.00 0.00 0.00 5.18
625 650 1.078426 AAGGCCGCTATTCAACGCT 60.078 52.632 0.00 0.00 0.00 5.07
626 651 1.352056 GAAGGCCGCTATTCAACGC 59.648 57.895 0.00 0.00 0.00 4.84
627 652 0.742990 TGGAAGGCCGCTATTCAACG 60.743 55.000 0.00 0.00 36.79 4.10
628 653 1.680338 ATGGAAGGCCGCTATTCAAC 58.320 50.000 0.00 0.00 36.79 3.18
629 654 3.327757 AGATATGGAAGGCCGCTATTCAA 59.672 43.478 0.00 0.00 36.79 2.69
630 655 2.906389 AGATATGGAAGGCCGCTATTCA 59.094 45.455 0.00 0.00 36.79 2.57
631 656 3.618690 AGATATGGAAGGCCGCTATTC 57.381 47.619 0.00 0.00 36.79 1.75
632 657 4.471386 ACATAGATATGGAAGGCCGCTATT 59.529 41.667 0.00 0.00 38.00 1.73
633 658 4.033709 ACATAGATATGGAAGGCCGCTAT 58.966 43.478 0.00 0.00 38.00 2.97
634 659 3.441101 ACATAGATATGGAAGGCCGCTA 58.559 45.455 0.00 0.00 38.00 4.26
635 660 2.234908 GACATAGATATGGAAGGCCGCT 59.765 50.000 0.00 0.00 38.00 5.52
636 661 2.622436 GACATAGATATGGAAGGCCGC 58.378 52.381 0.00 0.00 38.00 6.53
637 662 2.881074 CGACATAGATATGGAAGGCCG 58.119 52.381 0.00 0.00 38.00 6.13
638 663 2.622436 GCGACATAGATATGGAAGGCC 58.378 52.381 0.00 0.00 38.00 5.19
639 664 2.263077 CGCGACATAGATATGGAAGGC 58.737 52.381 0.00 1.99 38.00 4.35
640 665 2.417379 CCCGCGACATAGATATGGAAGG 60.417 54.545 8.23 0.00 38.00 3.46
641 666 2.492088 TCCCGCGACATAGATATGGAAG 59.508 50.000 8.23 0.00 38.00 3.46
642 667 2.492088 CTCCCGCGACATAGATATGGAA 59.508 50.000 8.23 0.00 38.00 3.53
643 668 2.092323 CTCCCGCGACATAGATATGGA 58.908 52.381 8.23 0.00 38.00 3.41
644 669 2.092323 TCTCCCGCGACATAGATATGG 58.908 52.381 8.23 0.00 38.00 2.74
645 670 3.850122 TTCTCCCGCGACATAGATATG 57.150 47.619 8.23 0.00 39.55 1.78
646 671 5.407407 AATTTCTCCCGCGACATAGATAT 57.593 39.130 8.23 2.58 0.00 1.63
647 672 4.866508 AATTTCTCCCGCGACATAGATA 57.133 40.909 8.23 0.08 0.00 1.98
648 673 3.753294 AATTTCTCCCGCGACATAGAT 57.247 42.857 8.23 0.00 0.00 1.98
649 674 3.536956 AAATTTCTCCCGCGACATAGA 57.463 42.857 8.23 1.10 0.00 1.98
650 675 4.025145 GGTAAAATTTCTCCCGCGACATAG 60.025 45.833 8.23 0.00 0.00 2.23
651 676 3.872771 GGTAAAATTTCTCCCGCGACATA 59.127 43.478 8.23 0.00 0.00 2.29
652 677 2.681344 GGTAAAATTTCTCCCGCGACAT 59.319 45.455 8.23 0.00 0.00 3.06
653 678 2.078392 GGTAAAATTTCTCCCGCGACA 58.922 47.619 8.23 0.00 0.00 4.35
654 679 1.061566 CGGTAAAATTTCTCCCGCGAC 59.938 52.381 8.23 0.00 0.00 5.19
655 680 1.361793 CGGTAAAATTTCTCCCGCGA 58.638 50.000 8.23 0.00 0.00 5.87
656 681 0.375803 CCGGTAAAATTTCTCCCGCG 59.624 55.000 14.35 0.00 37.37 6.46
657 682 1.399440 GACCGGTAAAATTTCTCCCGC 59.601 52.381 7.34 0.00 37.37 6.13
658 683 1.662122 CGACCGGTAAAATTTCTCCCG 59.338 52.381 7.34 13.33 38.39 5.14
659 684 1.399440 GCGACCGGTAAAATTTCTCCC 59.601 52.381 7.34 0.00 0.00 4.30
660 685 1.399440 GGCGACCGGTAAAATTTCTCC 59.601 52.381 7.34 0.00 0.00 3.71
661 686 1.061566 CGGCGACCGGTAAAATTTCTC 59.938 52.381 7.34 0.00 44.15 2.87
662 687 1.081094 CGGCGACCGGTAAAATTTCT 58.919 50.000 7.34 0.00 44.15 2.52
663 688 3.591442 CGGCGACCGGTAAAATTTC 57.409 52.632 7.34 0.00 44.15 2.17
674 699 0.743345 AGGCATCTTAAACGGCGACC 60.743 55.000 16.62 0.21 0.00 4.79
675 700 1.062148 GAAGGCATCTTAAACGGCGAC 59.938 52.381 16.62 0.00 32.52 5.19
676 701 1.365699 GAAGGCATCTTAAACGGCGA 58.634 50.000 16.62 0.00 32.52 5.54
677 702 0.377203 GGAAGGCATCTTAAACGGCG 59.623 55.000 4.80 4.80 32.52 6.46
678 703 0.738975 GGGAAGGCATCTTAAACGGC 59.261 55.000 0.00 0.00 32.52 5.68
679 704 2.122783 TGGGAAGGCATCTTAAACGG 57.877 50.000 0.00 0.00 32.52 4.44
680 705 7.687941 ATATAATGGGAAGGCATCTTAAACG 57.312 36.000 0.00 0.00 32.52 3.60
681 706 9.077885 TGAATATAATGGGAAGGCATCTTAAAC 57.922 33.333 0.00 0.00 32.52 2.01
682 707 9.300681 CTGAATATAATGGGAAGGCATCTTAAA 57.699 33.333 0.00 0.00 32.52 1.52
683 708 8.448008 ACTGAATATAATGGGAAGGCATCTTAA 58.552 33.333 0.00 0.00 32.52 1.85
684 709 7.988937 ACTGAATATAATGGGAAGGCATCTTA 58.011 34.615 0.00 0.00 32.52 2.10
685 710 6.856757 ACTGAATATAATGGGAAGGCATCTT 58.143 36.000 0.00 0.00 35.62 2.40
686 711 6.044754 TGACTGAATATAATGGGAAGGCATCT 59.955 38.462 0.00 0.00 0.00 2.90
687 712 6.240894 TGACTGAATATAATGGGAAGGCATC 58.759 40.000 0.00 0.00 0.00 3.91
688 713 6.183361 ACTGACTGAATATAATGGGAAGGCAT 60.183 38.462 0.00 0.00 0.00 4.40
689 714 5.132648 ACTGACTGAATATAATGGGAAGGCA 59.867 40.000 0.00 0.00 0.00 4.75
690 715 5.625150 ACTGACTGAATATAATGGGAAGGC 58.375 41.667 0.00 0.00 0.00 4.35
691 716 6.425114 CGAACTGACTGAATATAATGGGAAGG 59.575 42.308 0.00 0.00 0.00 3.46
692 717 6.986817 ACGAACTGACTGAATATAATGGGAAG 59.013 38.462 0.00 0.00 0.00 3.46
693 718 6.884832 ACGAACTGACTGAATATAATGGGAA 58.115 36.000 0.00 0.00 0.00 3.97
694 719 6.479972 ACGAACTGACTGAATATAATGGGA 57.520 37.500 0.00 0.00 0.00 4.37
695 720 8.833231 AATACGAACTGACTGAATATAATGGG 57.167 34.615 0.00 0.00 0.00 4.00
696 721 8.926710 GGAATACGAACTGACTGAATATAATGG 58.073 37.037 0.00 0.00 0.00 3.16
697 722 9.476202 TGGAATACGAACTGACTGAATATAATG 57.524 33.333 0.00 0.00 0.00 1.90
699 724 9.692749 GATGGAATACGAACTGACTGAATATAA 57.307 33.333 0.00 0.00 0.00 0.98
700 725 8.021396 CGATGGAATACGAACTGACTGAATATA 58.979 37.037 0.00 0.00 0.00 0.86
701 726 6.863645 CGATGGAATACGAACTGACTGAATAT 59.136 38.462 0.00 0.00 0.00 1.28
702 727 6.206498 CGATGGAATACGAACTGACTGAATA 58.794 40.000 0.00 0.00 0.00 1.75
703 728 5.043903 CGATGGAATACGAACTGACTGAAT 58.956 41.667 0.00 0.00 0.00 2.57
704 729 4.421058 CGATGGAATACGAACTGACTGAA 58.579 43.478 0.00 0.00 0.00 3.02
705 730 3.733988 GCGATGGAATACGAACTGACTGA 60.734 47.826 0.00 0.00 0.00 3.41
706 731 2.535984 GCGATGGAATACGAACTGACTG 59.464 50.000 0.00 0.00 0.00 3.51
707 732 2.481449 GGCGATGGAATACGAACTGACT 60.481 50.000 0.00 0.00 0.00 3.41
708 733 1.859080 GGCGATGGAATACGAACTGAC 59.141 52.381 0.00 0.00 0.00 3.51
709 734 1.754803 AGGCGATGGAATACGAACTGA 59.245 47.619 0.00 0.00 0.00 3.41
710 735 2.128035 GAGGCGATGGAATACGAACTG 58.872 52.381 0.00 0.00 0.00 3.16
711 736 1.754803 TGAGGCGATGGAATACGAACT 59.245 47.619 0.00 0.00 0.00 3.01
712 737 2.128035 CTGAGGCGATGGAATACGAAC 58.872 52.381 0.00 0.00 0.00 3.95
713 738 1.754803 ACTGAGGCGATGGAATACGAA 59.245 47.619 0.00 0.00 0.00 3.85
714 739 1.399714 ACTGAGGCGATGGAATACGA 58.600 50.000 0.00 0.00 0.00 3.43
715 740 2.128035 GAACTGAGGCGATGGAATACG 58.872 52.381 0.00 0.00 0.00 3.06
716 741 3.460857 AGAACTGAGGCGATGGAATAC 57.539 47.619 0.00 0.00 0.00 1.89
717 742 5.607939 TTAAGAACTGAGGCGATGGAATA 57.392 39.130 0.00 0.00 0.00 1.75
718 743 4.487714 TTAAGAACTGAGGCGATGGAAT 57.512 40.909 0.00 0.00 0.00 3.01
719 744 3.973206 TTAAGAACTGAGGCGATGGAA 57.027 42.857 0.00 0.00 0.00 3.53
720 745 4.487714 AATTAAGAACTGAGGCGATGGA 57.512 40.909 0.00 0.00 0.00 3.41
721 746 5.567138 AAAATTAAGAACTGAGGCGATGG 57.433 39.130 0.00 0.00 0.00 3.51
742 767 9.625747 AATCTTTTGCCTCCATTTTTCTAAAAA 57.374 25.926 3.29 3.29 41.59 1.94
743 768 9.625747 AAATCTTTTGCCTCCATTTTTCTAAAA 57.374 25.926 0.00 0.00 0.00 1.52
744 769 9.054922 CAAATCTTTTGCCTCCATTTTTCTAAA 57.945 29.630 0.00 0.00 0.00 1.85
745 770 7.173047 GCAAATCTTTTGCCTCCATTTTTCTAA 59.827 33.333 12.74 0.00 39.38 2.10
746 771 6.650390 GCAAATCTTTTGCCTCCATTTTTCTA 59.350 34.615 12.74 0.00 39.38 2.10
747 772 5.471116 GCAAATCTTTTGCCTCCATTTTTCT 59.529 36.000 12.74 0.00 39.38 2.52
748 773 5.692814 GCAAATCTTTTGCCTCCATTTTTC 58.307 37.500 12.74 0.00 39.38 2.29
749 774 5.694231 GCAAATCTTTTGCCTCCATTTTT 57.306 34.783 12.74 0.00 39.38 1.94
759 784 7.985634 TTAATCGATAAGGCAAATCTTTTGC 57.014 32.000 14.88 14.88 44.22 3.68
777 802 9.657121 GGCAATTCTCTTCTTCTTAATTAATCG 57.343 33.333 0.00 0.00 0.00 3.34
778 803 9.958234 GGGCAATTCTCTTCTTCTTAATTAATC 57.042 33.333 0.00 0.00 0.00 1.75
779 804 8.624776 CGGGCAATTCTCTTCTTCTTAATTAAT 58.375 33.333 0.00 0.00 0.00 1.40
780 805 7.067008 CCGGGCAATTCTCTTCTTCTTAATTAA 59.933 37.037 0.00 0.00 0.00 1.40
781 806 6.542370 CCGGGCAATTCTCTTCTTCTTAATTA 59.458 38.462 0.00 0.00 0.00 1.40
782 807 5.358160 CCGGGCAATTCTCTTCTTCTTAATT 59.642 40.000 0.00 0.00 0.00 1.40
783 808 4.884164 CCGGGCAATTCTCTTCTTCTTAAT 59.116 41.667 0.00 0.00 0.00 1.40
784 809 4.261801 CCGGGCAATTCTCTTCTTCTTAA 58.738 43.478 0.00 0.00 0.00 1.85
785 810 3.263425 ACCGGGCAATTCTCTTCTTCTTA 59.737 43.478 6.32 0.00 0.00 2.10
786 811 2.040412 ACCGGGCAATTCTCTTCTTCTT 59.960 45.455 6.32 0.00 0.00 2.52
787 812 1.630878 ACCGGGCAATTCTCTTCTTCT 59.369 47.619 6.32 0.00 0.00 2.85
788 813 2.115343 ACCGGGCAATTCTCTTCTTC 57.885 50.000 6.32 0.00 0.00 2.87
789 814 2.586648 AACCGGGCAATTCTCTTCTT 57.413 45.000 6.32 0.00 0.00 2.52
790 815 3.713826 TTAACCGGGCAATTCTCTTCT 57.286 42.857 6.32 0.00 0.00 2.85
791 816 4.983671 AATTAACCGGGCAATTCTCTTC 57.016 40.909 6.32 0.00 0.00 2.87
792 817 5.163693 CGTTAATTAACCGGGCAATTCTCTT 60.164 40.000 20.08 0.00 32.69 2.85
793 818 4.334481 CGTTAATTAACCGGGCAATTCTCT 59.666 41.667 20.08 0.00 32.69 3.10
794 819 4.496840 CCGTTAATTAACCGGGCAATTCTC 60.497 45.833 20.08 10.91 32.69 2.87
795 820 3.379057 CCGTTAATTAACCGGGCAATTCT 59.621 43.478 20.08 0.59 32.69 2.40
796 821 3.377798 TCCGTTAATTAACCGGGCAATTC 59.622 43.478 25.42 5.57 33.65 2.17
797 822 3.354467 TCCGTTAATTAACCGGGCAATT 58.646 40.909 25.42 16.74 33.65 2.32
798 823 3.002038 TCCGTTAATTAACCGGGCAAT 57.998 42.857 25.42 0.96 33.65 3.56
799 824 2.486472 TCCGTTAATTAACCGGGCAA 57.514 45.000 25.42 13.08 33.65 4.52
800 825 2.486472 TTCCGTTAATTAACCGGGCA 57.514 45.000 25.42 16.39 33.65 5.36
801 826 3.500982 GTTTTCCGTTAATTAACCGGGC 58.499 45.455 25.42 15.89 33.65 6.13
802 827 4.095410 GGTTTTCCGTTAATTAACCGGG 57.905 45.455 25.42 20.06 33.65 5.73
816 841 2.257371 GCTTTCGCCCGGTTTTCC 59.743 61.111 0.00 0.00 0.00 3.13
817 842 2.120355 TTCGCTTTCGCCCGGTTTTC 62.120 55.000 0.00 0.00 35.26 2.29
818 843 1.726533 TTTCGCTTTCGCCCGGTTTT 61.727 50.000 0.00 0.00 35.26 2.43
819 844 2.125202 CTTTCGCTTTCGCCCGGTTT 62.125 55.000 0.00 0.00 35.26 3.27
820 845 2.592287 TTTCGCTTTCGCCCGGTT 60.592 55.556 0.00 0.00 35.26 4.44
821 846 3.047877 CTTTCGCTTTCGCCCGGT 61.048 61.111 0.00 0.00 35.26 5.28
822 847 2.508755 GAACTTTCGCTTTCGCCCGG 62.509 60.000 0.00 0.00 35.26 5.73
823 848 1.154469 GAACTTTCGCTTTCGCCCG 60.154 57.895 0.00 0.00 35.26 6.13
824 849 0.166161 GAGAACTTTCGCTTTCGCCC 59.834 55.000 0.00 0.00 35.26 6.13
825 850 0.865769 TGAGAACTTTCGCTTTCGCC 59.134 50.000 0.00 0.00 35.26 5.54
826 851 2.663279 TTGAGAACTTTCGCTTTCGC 57.337 45.000 0.00 0.00 35.26 4.70
827 852 5.023551 AGATTTGAGAACTTTCGCTTTCG 57.976 39.130 0.00 0.00 0.00 3.46
828 853 5.626955 CCAAGATTTGAGAACTTTCGCTTTC 59.373 40.000 0.00 0.00 0.00 2.62
829 854 5.299279 TCCAAGATTTGAGAACTTTCGCTTT 59.701 36.000 0.00 0.00 0.00 3.51
830 855 4.821805 TCCAAGATTTGAGAACTTTCGCTT 59.178 37.500 0.00 0.00 0.00 4.68
831 856 4.389374 TCCAAGATTTGAGAACTTTCGCT 58.611 39.130 0.00 0.00 0.00 4.93
832 857 4.378874 CCTCCAAGATTTGAGAACTTTCGC 60.379 45.833 0.00 0.00 0.00 4.70
833 858 4.378874 GCCTCCAAGATTTGAGAACTTTCG 60.379 45.833 0.00 0.00 0.00 3.46
834 859 4.082517 GGCCTCCAAGATTTGAGAACTTTC 60.083 45.833 0.00 0.00 0.00 2.62
835 860 3.829026 GGCCTCCAAGATTTGAGAACTTT 59.171 43.478 0.00 0.00 0.00 2.66
836 861 3.425659 GGCCTCCAAGATTTGAGAACTT 58.574 45.455 0.00 0.00 0.00 2.66
900 925 1.684450 TGAAACAGCGAGTGGAGTGTA 59.316 47.619 0.00 0.00 0.00 2.90
901 926 0.464036 TGAAACAGCGAGTGGAGTGT 59.536 50.000 0.00 0.00 0.00 3.55
902 927 1.143305 CTGAAACAGCGAGTGGAGTG 58.857 55.000 0.00 0.00 0.00 3.51
903 928 0.753262 ACTGAAACAGCGAGTGGAGT 59.247 50.000 0.00 0.00 34.37 3.85
917 942 4.594970 TCTTTTTGTTGGTGGAGACTGAA 58.405 39.130 0.00 0.00 0.00 3.02
972 997 1.801913 GTCTGTGCGTAGGTGCTCG 60.802 63.158 0.00 0.00 35.36 5.03
1197 1225 3.363844 GAGCTGGCAGACGGAGGAC 62.364 68.421 20.86 0.00 0.00 3.85
1200 1228 2.125753 GTGAGCTGGCAGACGGAG 60.126 66.667 20.86 0.00 0.00 4.63
1802 1830 3.883489 AGCTCACAGTTTAAGTTTCCACC 59.117 43.478 0.00 0.00 0.00 4.61
1803 1831 5.500645 AAGCTCACAGTTTAAGTTTCCAC 57.499 39.130 0.00 0.00 0.00 4.02
1937 1965 8.919777 TTCATGATGCTCAAGAATATCAAGAT 57.080 30.769 0.00 0.00 30.28 2.40
1942 1970 8.265165 TGCTATTCATGATGCTCAAGAATATC 57.735 34.615 16.76 14.66 42.48 1.63
1971 2002 6.315642 TCCGCGTATTTGGAATATGTTTGTAA 59.684 34.615 4.92 0.00 0.00 2.41
1987 2018 1.449601 CCACCTTGCTCCGCGTATT 60.450 57.895 4.92 0.00 0.00 1.89
1988 2019 2.186903 CCACCTTGCTCCGCGTAT 59.813 61.111 4.92 0.00 0.00 3.06
2130 2182 2.807470 CGCACACCGCATACGACA 60.807 61.111 0.00 0.00 43.93 4.35
2183 2235 0.460109 GATTGGGACCGCCAATTTGC 60.460 55.000 7.15 0.00 37.91 3.68
2400 2457 6.650390 TCAGTTAAGTTTTACCCGGACAATAC 59.350 38.462 0.73 1.58 0.00 1.89
2446 2503 4.155310 ACTACAAAATGGTAAAGCGTGC 57.845 40.909 0.00 0.00 0.00 5.34
2461 2519 9.958234 GGGTTTTTAACGGTTTTATTACTACAA 57.042 29.630 0.00 0.00 0.00 2.41
2462 2520 9.348476 AGGGTTTTTAACGGTTTTATTACTACA 57.652 29.630 0.00 0.00 0.00 2.74
2491 2552 8.096414 GGTTCACCAGGTTTATTTACTACTACA 58.904 37.037 0.00 0.00 35.64 2.74
2492 2553 8.316946 AGGTTCACCAGGTTTATTTACTACTAC 58.683 37.037 0.00 0.00 38.89 2.73
2493 2554 8.439964 AGGTTCACCAGGTTTATTTACTACTA 57.560 34.615 0.00 0.00 38.89 1.82
2494 2555 7.325725 AGGTTCACCAGGTTTATTTACTACT 57.674 36.000 0.00 0.00 38.89 2.57
2630 2691 0.606401 AGGCATGGTGTTCTGAACCG 60.606 55.000 17.26 3.02 40.86 4.44
2669 2730 6.411376 TCTGAACTCAAAGTGAAAGTGGTAA 58.589 36.000 0.00 0.00 0.00 2.85
2735 2796 0.040058 TGGGATGCCTTGCTTGTGAT 59.960 50.000 4.35 0.00 0.00 3.06
2782 2860 2.035442 GTCCTTGGAAGCGGTCTGC 61.035 63.158 0.00 0.00 46.98 4.26
2784 2862 0.472471 TTTGTCCTTGGAAGCGGTCT 59.528 50.000 0.00 0.00 0.00 3.85
2819 2903 2.621055 TGCTGTGCCGAAAAATTACTGT 59.379 40.909 0.00 0.00 0.00 3.55
2820 2904 3.281341 TGCTGTGCCGAAAAATTACTG 57.719 42.857 0.00 0.00 0.00 2.74
2855 2939 3.181443 ACATTTCCCTTGACGTCTTTCCT 60.181 43.478 17.92 0.00 0.00 3.36
2921 3009 0.884514 TCTCGGAACTCTGAGCACAG 59.115 55.000 10.24 4.57 46.39 3.66
3038 3126 4.594920 AGAGATTCCAGTTGAGACAAAGGA 59.405 41.667 0.00 0.00 0.00 3.36
3076 3172 4.115199 AGGTTGCTGATCCGGGCC 62.115 66.667 0.00 0.00 0.00 5.80
3077 3173 2.825836 CAGGTTGCTGATCCGGGC 60.826 66.667 0.00 0.00 0.00 6.13
3078 3174 1.746615 CACAGGTTGCTGATCCGGG 60.747 63.158 0.00 0.00 0.00 5.73
3104 3200 9.903682 GTAGCTCAAATAAATCATGCATGTTAT 57.096 29.630 25.43 18.91 0.00 1.89
3145 3241 4.647424 AAGAAACTGCAAAATTCACCGA 57.353 36.364 8.09 0.00 0.00 4.69
3191 3287 5.584253 TGATCTAGCTTACTCCAACTCAC 57.416 43.478 0.00 0.00 0.00 3.51
3643 3739 6.198216 GCAAAACAACGAAGAAATAGCAAGAA 59.802 34.615 0.00 0.00 0.00 2.52
3751 3848 9.204570 GCATATAATTACAGTAACGAAGTCCAT 57.795 33.333 0.00 0.00 45.00 3.41
3822 3919 5.955496 CGTACGTAGGATGTTGTTTAAATGC 59.045 40.000 9.66 0.00 0.00 3.56
3834 3931 2.252747 TGCGTTTTCGTACGTAGGATG 58.747 47.619 17.87 9.95 46.03 3.51
3844 3941 0.040781 CCCGTGAAATGCGTTTTCGT 60.041 50.000 20.17 0.00 45.63 3.85
3845 3942 1.334288 GCCCGTGAAATGCGTTTTCG 61.334 55.000 17.13 17.13 45.63 3.46
3926 4033 1.466856 AGAATGCGCCATGTGTCAAT 58.533 45.000 4.18 0.00 0.00 2.57
4015 4137 7.684670 TCAATGCGTTTGAAACTAGATCATAC 58.315 34.615 6.49 5.42 41.38 2.39
4034 4156 4.975502 TCATTGTGTTTCTCGTTTCAATGC 59.024 37.500 9.78 0.00 40.67 3.56
4035 4157 8.726650 TTATCATTGTGTTTCTCGTTTCAATG 57.273 30.769 0.00 0.00 41.57 2.82
4043 4165 9.199184 CGAATAGTTTTATCATTGTGTTTCTCG 57.801 33.333 0.00 0.00 0.00 4.04
4069 4191 6.039382 ACTCTTGAACCAAGTGTCCAAATTAC 59.961 38.462 8.15 0.00 42.11 1.89
4114 4236 6.518208 TTCGAGGTTTCCAAAAAGAAAGAA 57.482 33.333 0.00 0.00 36.45 2.52
4158 4281 1.202592 TCTCGTTGCTGCAAACACCTA 60.203 47.619 17.80 0.00 0.00 3.08
4188 4311 5.273208 AGTACAGGAGGAATGAGAGCTTAA 58.727 41.667 0.00 0.00 0.00 1.85
4294 4417 9.674068 TTGGTGTTTTTCCTTTTTAAATAGCTT 57.326 25.926 0.00 0.00 0.00 3.74
4304 4427 6.941857 ACATGTACTTGGTGTTTTTCCTTTT 58.058 32.000 12.86 0.00 0.00 2.27
4308 4431 6.038936 AGTGTACATGTACTTGGTGTTTTTCC 59.961 38.462 30.69 5.64 37.00 3.13
4530 4663 2.234300 TTGTTCCGTCTTCTGTGACC 57.766 50.000 0.00 0.00 33.70 4.02
4570 4703 8.160342 TCTCGACGAGAATTTTCTTATTTTTCG 58.840 33.333 24.71 0.00 37.73 3.46
4584 4717 5.135508 TCCTTTTTCTTCTCGACGAGAAT 57.864 39.130 33.73 0.00 45.84 2.40
4589 4722 4.506654 TGAAGTTCCTTTTTCTTCTCGACG 59.493 41.667 0.00 0.00 38.52 5.12
4591 4724 6.995511 TTTGAAGTTCCTTTTTCTTCTCGA 57.004 33.333 0.00 0.00 38.52 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.