Multiple sequence alignment - TraesCS7D01G229100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G229100 chr7D 100.000 7502 0 0 1 7502 189251981 189244480 0.000000e+00 13854.0
1 TraesCS7D01G229100 chr7A 96.293 2131 54 10 703 2816 194790946 194793068 0.000000e+00 3474.0
2 TraesCS7D01G229100 chr7A 93.052 1756 80 14 2920 4661 194793278 194795005 0.000000e+00 2529.0
3 TraesCS7D01G229100 chr7A 91.484 1644 69 23 4690 6304 194794992 194796593 0.000000e+00 2194.0
4 TraesCS7D01G229100 chr7A 93.233 532 22 7 6329 6860 194796589 194797106 0.000000e+00 771.0
5 TraesCS7D01G229100 chr7A 87.705 366 35 7 7070 7430 194797852 194798212 1.160000e-112 418.0
6 TraesCS7D01G229100 chr7B 89.198 2879 137 63 4690 7498 333959802 333957028 0.000000e+00 3434.0
7 TraesCS7D01G229100 chr7B 95.941 1626 35 6 687 2297 333963715 333962106 0.000000e+00 2608.0
8 TraesCS7D01G229100 chr7B 94.708 907 29 2 3774 4661 333960695 333959789 0.000000e+00 1391.0
9 TraesCS7D01G229100 chr7B 90.139 649 56 6 48 690 74093313 74092667 0.000000e+00 837.0
10 TraesCS7D01G229100 chr7B 92.279 531 34 3 3005 3530 333961526 333960998 0.000000e+00 747.0
11 TraesCS7D01G229100 chr7B 94.954 436 13 5 2388 2816 333962086 333961653 0.000000e+00 675.0
12 TraesCS7D01G229100 chr7B 85.113 309 40 4 3267 3570 519904291 519903984 2.030000e-80 311.0
13 TraesCS7D01G229100 chr7B 94.054 185 11 0 3598 3782 333960999 333960815 1.590000e-71 281.0
14 TraesCS7D01G229100 chr7B 100.000 80 0 0 2834 2913 333961605 333961526 1.690000e-31 148.0
15 TraesCS7D01G229100 chr7B 80.882 136 19 6 6899 7029 704547325 704547458 4.790000e-17 100.0
16 TraesCS7D01G229100 chr6A 86.369 917 125 0 1127 2043 506100442 506099526 0.000000e+00 1002.0
17 TraesCS7D01G229100 chr6A 86.458 288 37 2 3267 3554 297628811 297629096 1.570000e-81 315.0
18 TraesCS7D01G229100 chr6B 85.855 912 128 1 1133 2043 549625253 549624342 0.000000e+00 968.0
19 TraesCS7D01G229100 chr6B 87.063 286 34 3 3270 3554 343040950 343040667 3.380000e-83 320.0
20 TraesCS7D01G229100 chr6D 85.636 912 130 1 1133 2043 364496899 364495988 0.000000e+00 957.0
21 TraesCS7D01G229100 chr3D 90.698 645 54 4 48 686 559108844 559109488 0.000000e+00 854.0
22 TraesCS7D01G229100 chr3D 86.851 289 35 2 3268 3554 255424678 255424391 3.380000e-83 320.0
23 TraesCS7D01G229100 chr4D 90.654 642 54 6 47 682 6227269 6226628 0.000000e+00 848.0
24 TraesCS7D01G229100 chr4D 85.235 298 39 4 3261 3555 32418818 32419113 1.220000e-77 302.0
25 TraesCS7D01G229100 chr4D 82.906 117 18 2 5802 5916 484495367 484495483 3.700000e-18 104.0
26 TraesCS7D01G229100 chr1B 90.543 645 55 4 48 686 644278203 644278847 0.000000e+00 848.0
27 TraesCS7D01G229100 chr1B 90.417 647 52 8 48 686 269218900 269218256 0.000000e+00 843.0
28 TraesCS7D01G229100 chr5B 90.358 643 52 8 48 682 67024623 67025263 0.000000e+00 835.0
29 TraesCS7D01G229100 chr2B 90.424 637 56 5 49 682 571344318 571344952 0.000000e+00 833.0
30 TraesCS7D01G229100 chr2B 81.818 121 16 6 5799 5916 201472032 201471915 6.200000e-16 97.1
31 TraesCS7D01G229100 chr2D 90.015 651 53 9 48 688 53791717 53792365 0.000000e+00 832.0
32 TraesCS7D01G229100 chr2D 83.414 826 67 19 4690 5500 35921615 35922385 0.000000e+00 702.0
33 TraesCS7D01G229100 chr2D 86.458 288 35 4 3267 3554 192744147 192744430 5.650000e-81 313.0
34 TraesCS7D01G229100 chr2D 87.500 200 23 2 4464 4661 35921429 35921628 5.850000e-56 230.0
35 TraesCS7D01G229100 chr2D 89.189 185 12 3 4190 4372 35921262 35921440 2.720000e-54 224.0
36 TraesCS7D01G229100 chr2D 81.148 122 15 8 5799 5916 143491993 143491876 2.880000e-14 91.6
37 TraesCS7D01G229100 chr4B 89.969 648 57 5 48 687 629957293 629957940 0.000000e+00 830.0
38 TraesCS7D01G229100 chr4B 80.435 138 25 1 6892 7027 405339550 405339413 3.700000e-18 104.0
39 TraesCS7D01G229100 chr2A 84.048 420 32 19 4690 5106 39292480 39292867 9.190000e-99 372.0
40 TraesCS7D01G229100 chr2A 91.061 179 14 2 4195 4372 39292129 39292306 2.700000e-59 241.0
41 TraesCS7D01G229100 chr5D 86.207 290 37 2 3267 3554 132472632 132472920 2.030000e-80 311.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G229100 chr7D 189244480 189251981 7501 True 13854.000000 13854 100.000000 1 7502 1 chr7D.!!$R1 7501
1 TraesCS7D01G229100 chr7A 194790946 194798212 7266 False 1877.200000 3474 92.353400 703 7430 5 chr7A.!!$F1 6727
2 TraesCS7D01G229100 chr7B 333957028 333963715 6687 True 1326.285714 3434 94.447714 687 7498 7 chr7B.!!$R3 6811
3 TraesCS7D01G229100 chr7B 74092667 74093313 646 True 837.000000 837 90.139000 48 690 1 chr7B.!!$R1 642
4 TraesCS7D01G229100 chr6A 506099526 506100442 916 True 1002.000000 1002 86.369000 1127 2043 1 chr6A.!!$R1 916
5 TraesCS7D01G229100 chr6B 549624342 549625253 911 True 968.000000 968 85.855000 1133 2043 1 chr6B.!!$R2 910
6 TraesCS7D01G229100 chr6D 364495988 364496899 911 True 957.000000 957 85.636000 1133 2043 1 chr6D.!!$R1 910
7 TraesCS7D01G229100 chr3D 559108844 559109488 644 False 854.000000 854 90.698000 48 686 1 chr3D.!!$F1 638
8 TraesCS7D01G229100 chr4D 6226628 6227269 641 True 848.000000 848 90.654000 47 682 1 chr4D.!!$R1 635
9 TraesCS7D01G229100 chr1B 644278203 644278847 644 False 848.000000 848 90.543000 48 686 1 chr1B.!!$F1 638
10 TraesCS7D01G229100 chr1B 269218256 269218900 644 True 843.000000 843 90.417000 48 686 1 chr1B.!!$R1 638
11 TraesCS7D01G229100 chr5B 67024623 67025263 640 False 835.000000 835 90.358000 48 682 1 chr5B.!!$F1 634
12 TraesCS7D01G229100 chr2B 571344318 571344952 634 False 833.000000 833 90.424000 49 682 1 chr2B.!!$F1 633
13 TraesCS7D01G229100 chr2D 53791717 53792365 648 False 832.000000 832 90.015000 48 688 1 chr2D.!!$F1 640
14 TraesCS7D01G229100 chr2D 35921262 35922385 1123 False 385.333333 702 86.701000 4190 5500 3 chr2D.!!$F3 1310
15 TraesCS7D01G229100 chr4B 629957293 629957940 647 False 830.000000 830 89.969000 48 687 1 chr4B.!!$F1 639
16 TraesCS7D01G229100 chr2A 39292129 39292867 738 False 306.500000 372 87.554500 4195 5106 2 chr2A.!!$F1 911

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
165 166 0.337428 ATTGGATCTTGGCAAGGGCT 59.663 50.0 25.92 11.89 40.87 5.19 F
771 790 0.380733 CGACATAGCTAGCCGTGTCA 59.619 55.0 32.23 9.18 40.65 3.58 F
2348 2391 1.081892 AACGTGATGATGCAGCACTC 58.918 50.0 6.89 7.12 46.79 3.51 F
2917 2999 0.179097 GGACCTCTGATTCGTCCTGC 60.179 60.0 10.04 0.00 42.39 4.85 F
2918 3000 0.820871 GACCTCTGATTCGTCCTGCT 59.179 55.0 0.00 0.00 0.00 4.24 F
4212 4503 0.032615 TTCAACAAGGCCCAGGTGTT 60.033 50.0 9.65 7.75 35.91 3.32 F
5024 5349 0.178953 AATCTGCACCAAGGGCACTT 60.179 50.0 0.00 0.00 36.11 3.16 F
5723 6099 0.405198 TGTTCCATCACATGCCCTGT 59.595 50.0 0.00 0.00 39.20 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1834 1867 0.105039 GCCACCTGGAAGTCGGATAG 59.895 60.000 0.00 0.00 37.39 2.08 R
2707 2750 0.251430 CCTCCTCCTCCCGGTCTATC 60.251 65.000 0.00 0.00 0.00 2.08 R
3476 3639 0.685097 CCTTCGTCCAACCTTCTCCA 59.315 55.000 0.00 0.00 0.00 3.86 R
3894 4185 1.137282 GCTACTCCAGTCTGGGCTTAC 59.863 57.143 19.11 2.96 38.32 2.34 R
4701 5021 1.827344 AGTCGCATGGTCTGAATGAGA 59.173 47.619 0.00 0.00 32.37 3.27 R
5916 6292 0.321346 TTTCTCAGAGCGACATGGCA 59.679 50.000 0.00 0.00 34.64 4.92 R
5917 6293 0.723981 GTTTCTCAGAGCGACATGGC 59.276 55.000 0.00 0.00 0.00 4.40 R
7231 8263 0.043032 ACCCCGAACCATAGGTACCA 59.957 55.000 15.94 0.00 33.12 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 155 0.536687 CATGGAGGCGCATTGGATCT 60.537 55.000 10.83 0.00 0.00 2.75
165 166 0.337428 ATTGGATCTTGGCAAGGGCT 59.663 50.000 25.92 11.89 40.87 5.19
225 226 1.545651 GCTAGGGTTTGTGTCCTGCTT 60.546 52.381 0.00 0.00 34.75 3.91
290 292 3.399181 CTGCCTAGCCCCCGTTCA 61.399 66.667 0.00 0.00 0.00 3.18
304 306 1.153628 GTTCAGGCGGTGCGTCTAT 60.154 57.895 0.00 0.00 40.90 1.98
375 384 3.793797 TTTGCTCGGATCTCATCGTTA 57.206 42.857 0.00 0.00 0.00 3.18
405 414 1.928503 GTTCGTGTGTCTTCGGTTTGA 59.071 47.619 0.00 0.00 0.00 2.69
420 429 4.344102 TCGGTTTGAATCCTTCCGATCTAT 59.656 41.667 0.00 0.00 44.04 1.98
436 445 7.438564 TCCGATCTATGTTATTTTTCATCGGA 58.561 34.615 14.14 14.14 35.75 4.55
477 486 1.981495 GCTGGTCCTATGAGGCCTTAT 59.019 52.381 15.30 15.30 34.61 1.73
497 506 2.178521 CGACGACTTCCCGACTGG 59.821 66.667 0.00 0.00 0.00 4.00
511 520 3.381949 CCGACTGGCTACTACAATAAGC 58.618 50.000 0.00 0.00 35.47 3.09
516 525 4.223032 ACTGGCTACTACAATAAGCTGTGT 59.777 41.667 0.00 0.00 36.48 3.72
517 526 5.160607 TGGCTACTACAATAAGCTGTGTT 57.839 39.130 3.55 0.00 36.48 3.32
533 543 0.963225 TGTTCGACTCCGGTGATGAA 59.037 50.000 11.17 10.36 36.24 2.57
674 685 9.917887 AGATGAATAGATTGGAAGTTTTCTCAT 57.082 29.630 0.00 0.00 0.00 2.90
713 724 2.028045 CGCACGTCATGTATGAACAGAC 59.972 50.000 0.00 0.00 39.49 3.51
771 790 0.380733 CGACATAGCTAGCCGTGTCA 59.619 55.000 32.23 9.18 40.65 3.58
792 811 3.667497 AACATTTGCTCTCGAGACTCA 57.333 42.857 12.08 9.73 0.00 3.41
1167 1200 1.153568 CGTGTGCATCATCGGGAGT 60.154 57.895 0.00 0.00 0.00 3.85
1350 1383 4.457496 CTCATGGACCGCTGCCGT 62.457 66.667 0.00 0.00 0.00 5.68
1438 1471 2.756283 CCTTCCGCGTCTCCTCCT 60.756 66.667 4.92 0.00 0.00 3.69
1439 1472 2.776913 CCTTCCGCGTCTCCTCCTC 61.777 68.421 4.92 0.00 0.00 3.71
1443 1476 2.902846 CGCGTCTCCTCCTCCGAT 60.903 66.667 0.00 0.00 0.00 4.18
1755 1788 1.908793 CCAGGTCGTGTGGGACTCT 60.909 63.158 0.00 0.00 37.12 3.24
2190 2223 8.682710 TGCATTGTAGTTTCCCATTTATAGAAC 58.317 33.333 0.00 0.00 0.00 3.01
2191 2224 8.682710 GCATTGTAGTTTCCCATTTATAGAACA 58.317 33.333 0.00 0.00 0.00 3.18
2194 2227 8.220755 TGTAGTTTCCCATTTATAGAACATGC 57.779 34.615 0.00 0.00 0.00 4.06
2195 2228 7.831690 TGTAGTTTCCCATTTATAGAACATGCA 59.168 33.333 0.00 0.00 0.00 3.96
2196 2229 7.338800 AGTTTCCCATTTATAGAACATGCAG 57.661 36.000 0.00 0.00 0.00 4.41
2197 2230 7.118723 AGTTTCCCATTTATAGAACATGCAGA 58.881 34.615 0.00 0.00 0.00 4.26
2198 2231 7.781693 AGTTTCCCATTTATAGAACATGCAGAT 59.218 33.333 0.00 0.00 0.00 2.90
2199 2232 7.514784 TTCCCATTTATAGAACATGCAGATG 57.485 36.000 0.00 0.00 35.49 2.90
2245 2288 3.686726 AGAAATTTCTAGCGGCTTGTCAG 59.313 43.478 19.17 0.00 35.34 3.51
2324 2367 8.915654 CATTGAATTTTAAGTCAAACAGTAGGC 58.084 33.333 9.09 0.00 44.71 3.93
2337 2380 5.545658 AACAGTAGGCATAAAACGTGATG 57.454 39.130 0.00 0.00 0.00 3.07
2341 2384 3.698029 AGGCATAAAACGTGATGATGC 57.302 42.857 13.23 13.23 41.73 3.91
2345 2388 3.731565 GCATAAAACGTGATGATGCAGCA 60.732 43.478 7.31 7.31 41.98 4.41
2347 2390 1.527034 AAACGTGATGATGCAGCACT 58.473 45.000 6.89 0.00 46.79 4.40
2348 2391 1.081892 AACGTGATGATGCAGCACTC 58.918 50.000 6.89 7.12 46.79 3.51
2431 2474 6.292150 CAAATAGGTATCCCTTTCTGGAGAC 58.708 44.000 0.00 0.00 44.21 3.36
2490 2533 2.821378 TCAGGATCCTGCATTGTTGTTG 59.179 45.455 33.39 9.69 43.31 3.33
2518 2561 4.529897 TGCCATTGAATGATTCACTAGCT 58.470 39.130 14.56 0.00 39.87 3.32
2524 2567 5.023533 TGAATGATTCACTAGCTGTACCC 57.976 43.478 3.29 0.00 34.08 3.69
2575 2618 2.157880 AGGCCAGAGGATATGGGAAGAT 60.158 50.000 5.01 0.00 38.33 2.40
2659 2702 1.492599 TGTTCCTTGTGGTGGTCATCA 59.507 47.619 0.00 0.00 34.23 3.07
2699 2742 2.550830 ACAGTTGGTAGCTTCACAGG 57.449 50.000 0.00 0.00 0.00 4.00
2701 2744 2.037772 ACAGTTGGTAGCTTCACAGGAG 59.962 50.000 0.00 0.00 0.00 3.69
2702 2745 2.300152 CAGTTGGTAGCTTCACAGGAGA 59.700 50.000 0.00 0.00 0.00 3.71
2703 2746 2.564947 AGTTGGTAGCTTCACAGGAGAG 59.435 50.000 0.00 0.00 0.00 3.20
2705 2748 1.203187 TGGTAGCTTCACAGGAGAGGT 60.203 52.381 0.00 0.00 0.00 3.85
2706 2749 2.042569 TGGTAGCTTCACAGGAGAGGTA 59.957 50.000 0.00 0.00 0.00 3.08
2707 2750 2.691011 GGTAGCTTCACAGGAGAGGTAG 59.309 54.545 0.00 0.00 0.00 3.18
2708 2751 2.909504 AGCTTCACAGGAGAGGTAGA 57.090 50.000 0.00 0.00 0.00 2.59
2709 2752 3.396685 AGCTTCACAGGAGAGGTAGAT 57.603 47.619 0.00 0.00 0.00 1.98
2710 2753 4.528076 AGCTTCACAGGAGAGGTAGATA 57.472 45.455 0.00 0.00 0.00 1.98
2794 2846 0.400213 GGGGTTGAGTGTGGTGATGA 59.600 55.000 0.00 0.00 0.00 2.92
2828 2880 2.516930 CCCAAGGCGGCACTATGG 60.517 66.667 13.08 13.47 0.00 2.74
2829 2881 2.516930 CCAAGGCGGCACTATGGG 60.517 66.667 13.08 0.00 0.00 4.00
2831 2883 1.524621 CAAGGCGGCACTATGGGAG 60.525 63.158 13.08 0.00 0.00 4.30
2832 2884 2.746375 AAGGCGGCACTATGGGAGG 61.746 63.158 13.08 0.00 0.00 4.30
2914 2996 1.770294 AGAGGACCTCTGATTCGTCC 58.230 55.000 23.72 9.52 45.40 4.79
2917 2999 0.179097 GGACCTCTGATTCGTCCTGC 60.179 60.000 10.04 0.00 42.39 4.85
2918 3000 0.820871 GACCTCTGATTCGTCCTGCT 59.179 55.000 0.00 0.00 0.00 4.24
2935 3093 4.100189 TCCTGCTCTTGCTTCTCCTATTAC 59.900 45.833 0.00 0.00 40.48 1.89
2938 3096 3.495276 GCTCTTGCTTCTCCTATTACCCC 60.495 52.174 0.00 0.00 36.03 4.95
3091 3249 4.186926 CTCTGCACTCTATTTGCTAGCAA 58.813 43.478 26.06 26.06 40.86 3.91
3098 3256 6.404074 GCACTCTATTTGCTAGCAACTTGAAT 60.404 38.462 29.33 20.81 37.00 2.57
3114 3272 4.141482 ACTTGAATAACACTGTCCACCTGT 60.141 41.667 0.00 0.00 0.00 4.00
3121 3279 1.066573 CACTGTCCACCTGTGATCCTC 60.067 57.143 0.00 0.00 43.57 3.71
3348 3511 8.221251 TGTGATTTACCTGCCCATATTAATGTA 58.779 33.333 0.00 0.00 0.00 2.29
3403 3566 7.335924 TGCCTGTGATTTACCTTATAGTTTGAC 59.664 37.037 0.00 0.00 0.00 3.18
3515 3678 1.328279 GGTGGTGGGAAGAAAAGTGG 58.672 55.000 0.00 0.00 0.00 4.00
3586 3749 5.402270 GTGACACTTGTTGTAATTTGATGCC 59.598 40.000 0.00 0.00 39.17 4.40
3620 3783 9.378551 CTGTAGTATTGCTTAATGACAAGGTTA 57.621 33.333 0.00 0.00 0.00 2.85
3634 3797 7.921786 TGACAAGGTTAATTTATGGAGTGAG 57.078 36.000 0.00 0.00 0.00 3.51
3646 3809 4.953940 ATGGAGTGAGCTAGAGAAATCC 57.046 45.455 0.00 0.00 0.00 3.01
3664 3827 1.448540 CGAACTACTGGGCCTGCTG 60.449 63.158 10.71 6.05 0.00 4.41
3714 3877 3.492102 TTGGGGAGCAATAGCATAGTC 57.508 47.619 0.00 0.00 45.49 2.59
3794 4085 1.419012 TCCCTTCTAGCTGCATCCATG 59.581 52.381 1.02 0.00 0.00 3.66
3842 4133 4.770010 TGTCATGGTTTCTTTGGGGAATAC 59.230 41.667 0.00 0.00 0.00 1.89
3894 4185 6.204108 ACATAAAGTTGTTCCCTACACTTTCG 59.796 38.462 0.00 0.00 38.21 3.46
3962 4253 5.689383 TGGATTCTTTGTACAACTTGCTC 57.311 39.130 8.07 2.19 0.00 4.26
4003 4294 2.105477 AGCCCCACATGATTAGTAGCTG 59.895 50.000 0.00 0.00 0.00 4.24
4020 4311 5.823045 AGTAGCTGAAGGTATTTGGTTATGC 59.177 40.000 0.00 0.00 0.00 3.14
4173 4464 3.737850 CCTCAGTGGGCTCATATTTCTC 58.262 50.000 0.00 0.00 0.00 2.87
4205 4496 1.269778 GCAGAGTTTTCAACAAGGCCC 60.270 52.381 0.00 0.00 0.00 5.80
4212 4503 0.032615 TTCAACAAGGCCCAGGTGTT 60.033 50.000 9.65 7.75 35.91 3.32
4356 4647 0.468226 TTGAGCTCCACCGAACACTT 59.532 50.000 12.15 0.00 0.00 3.16
4401 4692 0.630673 AATGGCAGTTGGATGGGCTA 59.369 50.000 0.00 0.00 0.00 3.93
4404 4695 0.464554 GGCAGTTGGATGGGCTAGAC 60.465 60.000 0.00 0.00 0.00 2.59
4661 4981 6.942576 AGCCTTAAGAAAATCTGCTTACTTCA 59.057 34.615 3.36 0.00 0.00 3.02
4662 4982 7.024171 GCCTTAAGAAAATCTGCTTACTTCAC 58.976 38.462 3.36 0.00 0.00 3.18
4663 4983 7.530863 CCTTAAGAAAATCTGCTTACTTCACC 58.469 38.462 3.36 0.00 0.00 4.02
4664 4984 5.966742 AAGAAAATCTGCTTACTTCACCC 57.033 39.130 0.00 0.00 0.00 4.61
4665 4985 4.003648 AGAAAATCTGCTTACTTCACCCG 58.996 43.478 0.00 0.00 0.00 5.28
4666 4986 1.739067 AATCTGCTTACTTCACCCGC 58.261 50.000 0.00 0.00 0.00 6.13
4667 4987 0.613260 ATCTGCTTACTTCACCCGCA 59.387 50.000 0.00 0.00 0.00 5.69
4668 4988 0.394938 TCTGCTTACTTCACCCGCAA 59.605 50.000 0.00 0.00 0.00 4.85
4669 4989 1.202710 TCTGCTTACTTCACCCGCAAA 60.203 47.619 0.00 0.00 0.00 3.68
4670 4990 1.606668 CTGCTTACTTCACCCGCAAAA 59.393 47.619 0.00 0.00 0.00 2.44
4671 4991 2.228822 CTGCTTACTTCACCCGCAAAAT 59.771 45.455 0.00 0.00 0.00 1.82
4672 4992 3.413327 TGCTTACTTCACCCGCAAAATA 58.587 40.909 0.00 0.00 0.00 1.40
4673 4993 3.821600 TGCTTACTTCACCCGCAAAATAA 59.178 39.130 0.00 0.00 0.00 1.40
4674 4994 4.278669 TGCTTACTTCACCCGCAAAATAAA 59.721 37.500 0.00 0.00 0.00 1.40
4675 4995 5.221263 TGCTTACTTCACCCGCAAAATAAAA 60.221 36.000 0.00 0.00 0.00 1.52
4676 4996 5.867174 GCTTACTTCACCCGCAAAATAAAAT 59.133 36.000 0.00 0.00 0.00 1.82
4677 4997 7.030768 GCTTACTTCACCCGCAAAATAAAATA 58.969 34.615 0.00 0.00 0.00 1.40
4678 4998 7.542824 GCTTACTTCACCCGCAAAATAAAATAA 59.457 33.333 0.00 0.00 0.00 1.40
4679 4999 9.413048 CTTACTTCACCCGCAAAATAAAATAAA 57.587 29.630 0.00 0.00 0.00 1.40
4680 5000 9.760077 TTACTTCACCCGCAAAATAAAATAAAA 57.240 25.926 0.00 0.00 0.00 1.52
4681 5001 8.840833 ACTTCACCCGCAAAATAAAATAAAAT 57.159 26.923 0.00 0.00 0.00 1.82
4682 5002 9.930693 ACTTCACCCGCAAAATAAAATAAAATA 57.069 25.926 0.00 0.00 0.00 1.40
4717 5037 5.181748 ACTTACTTCTCATTCAGACCATGC 58.818 41.667 0.00 0.00 0.00 4.06
4732 5052 5.755375 CAGACCATGCGACTATTTTCTATGT 59.245 40.000 0.00 0.00 0.00 2.29
4743 5063 9.625009 CGACTATTTTCTATGTCATTCTTTTCG 57.375 33.333 0.00 0.00 0.00 3.46
4788 5110 1.193874 CAACGAGCTTCACGGGTAAAC 59.806 52.381 0.00 0.00 34.93 2.01
4906 5228 3.951037 TGTCACTGTTACACCAAAATGCT 59.049 39.130 0.00 0.00 0.00 3.79
4922 5244 2.113860 TGCTAGTGCAGGGCTTTAAG 57.886 50.000 0.00 0.00 45.31 1.85
5022 5347 1.767759 ATAATCTGCACCAAGGGCAC 58.232 50.000 0.00 0.00 36.11 5.01
5024 5349 0.178953 AATCTGCACCAAGGGCACTT 60.179 50.000 0.00 0.00 36.11 3.16
5088 5418 3.067320 GCTGGCTTCCTTTACATGGAATC 59.933 47.826 0.00 0.00 42.03 2.52
5106 5436 8.890718 CATGGAATCCAAGCAATATATAGTCAG 58.109 37.037 5.89 0.00 36.95 3.51
5109 5439 8.940952 GGAATCCAAGCAATATATAGTCAGTTC 58.059 37.037 0.00 0.00 0.00 3.01
5142 5472 4.978099 ACATCATCTGTTCTGTCCAAGTT 58.022 39.130 0.00 0.00 32.90 2.66
5237 5567 0.485099 AGGAGACACTCAGTGGGACT 59.515 55.000 10.28 5.46 37.94 3.85
5238 5568 1.133009 AGGAGACACTCAGTGGGACTT 60.133 52.381 10.28 0.00 37.94 3.01
5239 5569 2.110188 AGGAGACACTCAGTGGGACTTA 59.890 50.000 10.28 0.00 37.94 2.24
5240 5570 2.897969 GGAGACACTCAGTGGGACTTAA 59.102 50.000 10.28 0.00 37.94 1.85
5241 5571 3.056465 GGAGACACTCAGTGGGACTTAAG 60.056 52.174 10.28 0.00 37.94 1.85
5242 5572 3.827302 GAGACACTCAGTGGGACTTAAGA 59.173 47.826 10.28 0.00 37.94 2.10
5243 5573 3.829601 AGACACTCAGTGGGACTTAAGAG 59.170 47.826 10.28 0.00 37.94 2.85
5454 5825 1.965643 AGCCACATTTGTCAGCATTGT 59.034 42.857 5.36 0.00 0.00 2.71
5550 5921 7.490840 TGCCATTGTCCTTTATGTGAATAATG 58.509 34.615 0.00 0.00 0.00 1.90
5625 5996 2.050144 AGGAGTCAGGCTCAACTTTCA 58.950 47.619 3.96 0.00 45.88 2.69
5626 5997 2.641815 AGGAGTCAGGCTCAACTTTCAT 59.358 45.455 3.96 0.00 45.88 2.57
5627 5998 2.746362 GGAGTCAGGCTCAACTTTCATG 59.254 50.000 3.96 0.00 45.88 3.07
5628 5999 3.406764 GAGTCAGGCTCAACTTTCATGT 58.593 45.455 0.00 0.00 43.58 3.21
5629 6000 3.144506 AGTCAGGCTCAACTTTCATGTG 58.855 45.455 0.00 0.00 0.00 3.21
5671 6047 8.353423 AGTTATGCTAACCAACAGAAATCATT 57.647 30.769 3.40 0.00 0.00 2.57
5685 6061 9.927668 AACAGAAATCATTGTAAAATACCAAGG 57.072 29.630 0.00 0.00 0.00 3.61
5723 6099 0.405198 TGTTCCATCACATGCCCTGT 59.595 50.000 0.00 0.00 39.20 4.00
5776 6152 2.223479 GCACATTGTGAAACGGTGAAGT 60.223 45.455 20.77 0.00 42.39 3.01
5853 6229 2.569354 GGGGTGGCATTTGCGAACA 61.569 57.895 4.98 0.00 38.27 3.18
5863 6239 3.181518 GCATTTGCGAACATTTTGATGGG 60.182 43.478 0.00 0.00 0.00 4.00
5869 6245 6.030548 TGCGAACATTTTGATGGGATTTTA 57.969 33.333 0.00 0.00 0.00 1.52
5870 6246 6.098679 TGCGAACATTTTGATGGGATTTTAG 58.901 36.000 0.00 0.00 0.00 1.85
5871 6247 6.099341 GCGAACATTTTGATGGGATTTTAGT 58.901 36.000 0.00 0.00 0.00 2.24
5873 6249 7.411804 GCGAACATTTTGATGGGATTTTAGTTG 60.412 37.037 0.00 0.00 0.00 3.16
5874 6250 7.598493 CGAACATTTTGATGGGATTTTAGTTGT 59.402 33.333 0.00 0.00 0.00 3.32
5875 6251 8.606040 AACATTTTGATGGGATTTTAGTTGTG 57.394 30.769 0.00 0.00 0.00 3.33
5877 6253 5.736951 TTTGATGGGATTTTAGTTGTGGG 57.263 39.130 0.00 0.00 0.00 4.61
5878 6254 4.396357 TGATGGGATTTTAGTTGTGGGT 57.604 40.909 0.00 0.00 0.00 4.51
5891 6267 1.760480 GTGGGTGGGTGGCAGTTTT 60.760 57.895 0.00 0.00 0.00 2.43
5912 6288 6.998968 TTTTTCAAAGTGACATGGCATTTT 57.001 29.167 15.78 15.78 0.00 1.82
5913 6289 6.601741 TTTTCAAAGTGACATGGCATTTTC 57.398 33.333 18.38 0.00 0.00 2.29
5914 6290 5.534207 TTCAAAGTGACATGGCATTTTCT 57.466 34.783 18.38 0.95 0.00 2.52
5915 6291 4.873817 TCAAAGTGACATGGCATTTTCTG 58.126 39.130 18.38 10.19 0.00 3.02
5916 6292 4.341806 TCAAAGTGACATGGCATTTTCTGT 59.658 37.500 18.38 0.00 0.00 3.41
5917 6293 3.928727 AGTGACATGGCATTTTCTGTG 57.071 42.857 3.50 0.00 0.00 3.66
5930 6306 0.671472 TTCTGTGCCATGTCGCTCTG 60.671 55.000 0.00 0.00 0.00 3.35
6002 6379 1.002134 CCACCTGTTCCCAGCGAAT 60.002 57.895 0.00 0.00 37.38 3.34
6119 6507 3.721575 ACAATATCCCAACCTGGCTATGA 59.278 43.478 0.00 0.00 35.79 2.15
6347 6744 4.818546 GTCATATGGCTGCAGTATCTGTTT 59.181 41.667 16.64 0.00 33.43 2.83
6523 6920 2.355010 ATATGTGGGGAAAGCAGCTC 57.645 50.000 0.00 0.00 0.00 4.09
6646 7043 5.731957 TTAGGCCGCAAGTATATGATACA 57.268 39.130 0.00 0.00 0.00 2.29
6685 7082 0.598065 GTGGATGGTCAAGTTGTGCC 59.402 55.000 2.11 7.43 0.00 5.01
6688 7085 1.586154 GATGGTCAAGTTGTGCCGGG 61.586 60.000 2.18 0.00 0.00 5.73
6690 7087 2.112297 GTCAAGTTGTGCCGGGGA 59.888 61.111 2.18 0.00 0.00 4.81
6707 7104 5.348164 CCGGGGATTTCACATTCAAAATAC 58.652 41.667 0.00 0.00 0.00 1.89
6748 7145 7.621428 ATTTGTGAATCCTGATTACTGTCTG 57.379 36.000 0.00 0.00 0.00 3.51
6751 7148 4.569966 GTGAATCCTGATTACTGTCTGCTG 59.430 45.833 0.00 0.00 0.00 4.41
6752 7149 4.223700 TGAATCCTGATTACTGTCTGCTGT 59.776 41.667 0.00 0.00 0.00 4.40
6753 7150 4.833478 ATCCTGATTACTGTCTGCTGTT 57.167 40.909 0.00 0.00 0.00 3.16
6754 7151 4.193826 TCCTGATTACTGTCTGCTGTTC 57.806 45.455 0.00 0.00 0.00 3.18
6755 7152 3.055819 TCCTGATTACTGTCTGCTGTTCC 60.056 47.826 0.00 0.00 0.00 3.62
6756 7153 2.926200 CTGATTACTGTCTGCTGTTCCG 59.074 50.000 0.00 0.00 0.00 4.30
6757 7154 2.560981 TGATTACTGTCTGCTGTTCCGA 59.439 45.455 0.00 0.00 0.00 4.55
6758 7155 2.433868 TTACTGTCTGCTGTTCCGAC 57.566 50.000 0.00 0.00 0.00 4.79
6759 7156 0.240145 TACTGTCTGCTGTTCCGACG 59.760 55.000 0.00 0.00 0.00 5.12
6760 7157 1.285950 CTGTCTGCTGTTCCGACGA 59.714 57.895 0.00 0.00 0.00 4.20
6761 7158 0.318699 CTGTCTGCTGTTCCGACGAA 60.319 55.000 0.00 0.00 0.00 3.85
6762 7159 0.103390 TGTCTGCTGTTCCGACGAAA 59.897 50.000 0.00 0.00 0.00 3.46
6763 7160 1.270094 TGTCTGCTGTTCCGACGAAAT 60.270 47.619 0.00 0.00 0.00 2.17
6764 7161 2.029739 TGTCTGCTGTTCCGACGAAATA 60.030 45.455 0.00 0.00 0.00 1.40
6785 7182 9.803315 GAAATAGATGGAAGGAACATTTAAACC 57.197 33.333 0.00 0.00 0.00 3.27
6825 7226 6.215431 TCTTTGAGATCATACTCCCTTTGGAA 59.785 38.462 0.00 0.00 41.17 3.53
6826 7227 6.581388 TTGAGATCATACTCCCTTTGGAAT 57.419 37.500 0.00 0.00 41.17 3.01
6827 7228 6.581388 TGAGATCATACTCCCTTTGGAATT 57.419 37.500 0.00 0.00 41.17 2.17
6828 7229 6.973642 TGAGATCATACTCCCTTTGGAATTT 58.026 36.000 0.00 0.00 41.17 1.82
6829 7230 6.830324 TGAGATCATACTCCCTTTGGAATTTG 59.170 38.462 0.00 0.00 41.17 2.32
6830 7231 6.131961 AGATCATACTCCCTTTGGAATTTGG 58.868 40.000 0.00 0.00 41.17 3.28
6831 7232 5.528600 TCATACTCCCTTTGGAATTTGGA 57.471 39.130 0.00 0.00 41.17 3.53
6834 7235 7.647827 TCATACTCCCTTTGGAATTTGGATTA 58.352 34.615 0.00 0.00 41.17 1.75
6851 7252 3.939592 GGATTAGAATATAAGCCGGGCAC 59.060 47.826 23.09 3.38 0.00 5.01
6852 7253 2.736144 TAGAATATAAGCCGGGCACG 57.264 50.000 23.09 0.00 40.55 5.34
6862 7263 4.946038 CGGGCACGGGATTTTAGA 57.054 55.556 0.00 0.00 36.18 2.10
6931 7332 9.922305 CTAGATTAATCGTTGAATGAACTTTCC 57.078 33.333 9.78 0.00 31.70 3.13
6947 7348 8.759481 TGAACTTTCCAAATATATATGTGGCA 57.241 30.769 22.81 12.69 40.28 4.92
6948 7349 9.365906 TGAACTTTCCAAATATATATGTGGCAT 57.634 29.630 22.81 9.69 40.28 4.40
6964 7365 9.859427 ATATGTGGCATATTATACATGTTTTGC 57.141 29.630 2.30 2.77 35.55 3.68
6990 7391 7.484035 AGTTAAATCGATGACCTAAATGCTC 57.516 36.000 0.00 0.00 0.00 4.26
7013 7821 7.348080 TCGTGTCTGACTTATATTTCCATCT 57.652 36.000 9.51 0.00 0.00 2.90
7014 7822 7.203218 TCGTGTCTGACTTATATTTCCATCTG 58.797 38.462 9.51 0.00 0.00 2.90
7015 7823 6.422100 CGTGTCTGACTTATATTTCCATCTGG 59.578 42.308 9.51 0.00 0.00 3.86
7016 7824 7.500992 GTGTCTGACTTATATTTCCATCTGGA 58.499 38.462 9.51 0.00 43.73 3.86
7035 7843 2.708325 GGAGGGAGTAGATGAAATGCCT 59.292 50.000 0.00 0.00 36.03 4.75
7036 7844 3.137360 GGAGGGAGTAGATGAAATGCCTT 59.863 47.826 0.00 0.00 33.12 4.35
7082 8114 6.739112 ACCAAAATCTTTTGTTACTGAGCTC 58.261 36.000 6.82 6.82 44.52 4.09
7096 8128 1.001887 AGCTCGAGGACGGAGAAGT 60.002 57.895 15.58 0.00 40.21 3.01
7120 8152 0.839277 ATGATCTTCACGGATGCCCA 59.161 50.000 0.00 0.00 0.00 5.36
7121 8153 0.107703 TGATCTTCACGGATGCCCAC 60.108 55.000 0.00 0.00 0.00 4.61
7131 8163 1.452833 GATGCCCACCTCTTCAGGC 60.453 63.158 0.00 0.00 45.05 4.85
7137 8169 3.710722 ACCTCTTCAGGCAGCCGG 61.711 66.667 5.55 5.25 45.05 6.13
7155 8187 2.936032 GAGGGTGGGGGCTCAACT 60.936 66.667 0.00 0.00 0.00 3.16
7176 8208 5.006386 ACTGAGGATTGAGATTTGTGGAAC 58.994 41.667 0.00 0.00 37.35 3.62
7198 8230 1.482954 CTGAGAGAGGACTGATGCCA 58.517 55.000 0.00 0.00 0.00 4.92
7269 8301 3.493303 GGTGGGAGGGAGCCATCC 61.493 72.222 11.66 11.66 45.85 3.51
7312 8344 8.653338 TCGGTAATTATTCTTCTTTGAACGAAG 58.347 33.333 5.18 5.18 39.32 3.79
7393 8438 8.829373 AGGCTTGTATTGATCTATTCCTTTTT 57.171 30.769 0.00 0.00 0.00 1.94
7414 8459 7.421530 TTTTTCTAGTGTGACTCTATGTTGC 57.578 36.000 0.00 0.00 0.00 4.17
7415 8460 4.720649 TCTAGTGTGACTCTATGTTGCC 57.279 45.455 0.00 0.00 0.00 4.52
7418 8463 2.368548 AGTGTGACTCTATGTTGCCACA 59.631 45.455 0.00 0.00 37.31 4.17
7419 8464 2.480419 GTGTGACTCTATGTTGCCACAC 59.520 50.000 0.00 0.00 41.40 3.82
7420 8465 2.076863 GTGACTCTATGTTGCCACACC 58.923 52.381 0.00 0.00 35.03 4.16
7421 8466 1.696884 TGACTCTATGTTGCCACACCA 59.303 47.619 0.00 0.00 35.03 4.17
7431 8476 2.200337 GCCACACCAGGTTGTTCCC 61.200 63.158 0.00 0.00 36.75 3.97
7441 8486 0.521735 GGTTGTTCCCGTGCTCAATC 59.478 55.000 0.00 0.00 0.00 2.67
7455 8500 6.525628 CCGTGCTCAATCAATATAAATCATGC 59.474 38.462 0.00 0.00 0.00 4.06
7458 8503 6.430616 TGCTCAATCAATATAAATCATGCGGA 59.569 34.615 0.00 0.00 0.00 5.54
7459 8504 6.744537 GCTCAATCAATATAAATCATGCGGAC 59.255 38.462 0.00 0.00 0.00 4.79
7481 8526 4.133078 CTCTCCTGCCCTCAATCAATAAC 58.867 47.826 0.00 0.00 0.00 1.89
7498 8543 0.546122 AACAATCATGCGGCCTCCTA 59.454 50.000 0.00 0.00 0.00 2.94
7499 8544 0.179045 ACAATCATGCGGCCTCCTAC 60.179 55.000 0.00 0.00 0.00 3.18
7500 8545 1.069765 AATCATGCGGCCTCCTACG 59.930 57.895 0.00 0.00 0.00 3.51
7501 8546 2.383245 AATCATGCGGCCTCCTACGG 62.383 60.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.142097 GAGGAGGCTGTACGGAAGC 59.858 63.158 5.68 0.00 40.06 3.86
36 37 0.684805 AGGAGGAGGCTGTACGGAAG 60.685 60.000 5.68 0.00 0.00 3.46
37 38 0.683504 GAGGAGGAGGCTGTACGGAA 60.684 60.000 5.68 0.00 0.00 4.30
38 39 1.076923 GAGGAGGAGGCTGTACGGA 60.077 63.158 5.68 0.00 0.00 4.69
39 40 2.128507 GGAGGAGGAGGCTGTACGG 61.129 68.421 0.00 0.00 0.00 4.02
40 41 1.076632 AGGAGGAGGAGGCTGTACG 60.077 63.158 0.00 0.00 0.00 3.67
41 42 0.757561 GGAGGAGGAGGAGGCTGTAC 60.758 65.000 0.00 0.00 0.00 2.90
42 43 1.221909 TGGAGGAGGAGGAGGCTGTA 61.222 60.000 0.00 0.00 0.00 2.74
43 44 2.112072 TTGGAGGAGGAGGAGGCTGT 62.112 60.000 0.00 0.00 0.00 4.40
44 45 0.911525 TTTGGAGGAGGAGGAGGCTG 60.912 60.000 0.00 0.00 0.00 4.85
45 46 0.178861 TTTTGGAGGAGGAGGAGGCT 60.179 55.000 0.00 0.00 0.00 4.58
146 147 0.337428 AGCCCTTGCCAAGATCCAAT 59.663 50.000 5.89 0.00 38.69 3.16
147 148 0.612732 CAGCCCTTGCCAAGATCCAA 60.613 55.000 5.89 0.00 38.69 3.53
206 207 2.568623 AAGCAGGACACAAACCCTAG 57.431 50.000 0.00 0.00 0.00 3.02
225 226 3.515286 CGCCGTCTCGCCTTCCTA 61.515 66.667 0.00 0.00 0.00 2.94
290 292 1.364171 GATGATAGACGCACCGCCT 59.636 57.895 0.00 0.00 0.00 5.52
304 306 0.034756 CTCCACACCACCAACGATGA 59.965 55.000 0.00 0.00 0.00 2.92
375 384 2.225019 AGACACACGAACGTAGACGAAT 59.775 45.455 9.41 0.00 43.02 3.34
405 414 9.627123 TGAAAAATAACATAGATCGGAAGGATT 57.373 29.630 0.00 0.00 34.82 3.01
420 429 6.367421 CAAACGTCTCCGATGAAAAATAACA 58.633 36.000 0.00 0.00 37.88 2.41
436 445 0.535102 CCCCAGAACAGCAAACGTCT 60.535 55.000 0.00 0.00 0.00 4.18
441 450 1.108727 CAGCACCCCAGAACAGCAAA 61.109 55.000 0.00 0.00 0.00 3.68
477 486 1.598962 AGTCGGGAAGTCGTCGTGA 60.599 57.895 0.00 0.00 0.00 4.35
497 506 5.004535 GTCGAACACAGCTTATTGTAGTAGC 59.995 44.000 0.00 0.00 35.16 3.58
511 520 0.243907 ATCACCGGAGTCGAACACAG 59.756 55.000 9.46 0.00 39.00 3.66
516 525 0.530744 CCTTCATCACCGGAGTCGAA 59.469 55.000 9.46 7.01 39.00 3.71
517 526 1.320344 CCCTTCATCACCGGAGTCGA 61.320 60.000 9.46 0.00 39.00 4.20
551 561 1.080501 CTGAAGCGAGTCGAAGGCA 60.081 57.895 18.61 7.15 0.00 4.75
623 633 7.269477 TCAATCATGTCATACAACAAACACA 57.731 32.000 0.00 0.00 31.81 3.72
638 649 9.636789 TTCCAATCTATTCATCTTCAATCATGT 57.363 29.630 0.00 0.00 0.00 3.21
682 693 4.475763 ACATGACGTGCGTTTTCATTTA 57.524 36.364 0.00 0.00 0.00 1.40
713 724 5.681880 TCGGCTAGTTTGTTGATTTTTACG 58.318 37.500 0.00 0.00 0.00 3.18
716 727 6.575162 ATCTCGGCTAGTTTGTTGATTTTT 57.425 33.333 0.00 0.00 0.00 1.94
771 790 3.995199 TGAGTCTCGAGAGCAAATGTTT 58.005 40.909 17.22 0.00 0.00 2.83
1575 1608 0.958382 CGATGGGCTTGTTCCGGAAA 60.958 55.000 20.79 2.90 0.00 3.13
1686 1719 2.125106 ATCTTGGAGGCGCGGAAC 60.125 61.111 8.83 0.00 0.00 3.62
1755 1788 1.592400 CGTAGGCCTCAACGACCTCA 61.592 60.000 21.15 0.00 41.55 3.86
1834 1867 0.105039 GCCACCTGGAAGTCGGATAG 59.895 60.000 0.00 0.00 37.39 2.08
2190 2223 3.014623 AGATGTGTCAACCATCTGCATG 58.985 45.455 5.40 0.00 45.53 4.06
2191 2224 3.361281 AGATGTGTCAACCATCTGCAT 57.639 42.857 5.40 0.00 45.53 3.96
2192 2225 2.865119 AGATGTGTCAACCATCTGCA 57.135 45.000 5.40 0.00 45.53 4.41
2193 2226 3.866651 ACTAGATGTGTCAACCATCTGC 58.133 45.455 13.61 0.00 46.42 4.26
2194 2227 7.905604 TTAAACTAGATGTGTCAACCATCTG 57.094 36.000 13.61 8.03 46.42 2.90
2324 2367 3.787634 GTGCTGCATCATCACGTTTTATG 59.212 43.478 5.27 0.00 0.00 1.90
2431 2474 4.297299 ACTTGAACAGCACAAATGACTG 57.703 40.909 6.65 6.65 36.57 3.51
2490 2533 4.389687 GTGAATCATTCAATGGCAACCAAC 59.610 41.667 0.29 0.00 42.15 3.77
2518 2561 6.270000 CCTTAGATCATGATAAGTGGGGTACA 59.730 42.308 8.54 0.00 0.00 2.90
2524 2567 5.046014 CCCTCCCTTAGATCATGATAAGTGG 60.046 48.000 8.54 12.24 0.00 4.00
2575 2618 2.311463 GGCTAGGCTACATCACTCTCA 58.689 52.381 9.46 0.00 0.00 3.27
2659 2702 1.153524 TGGTGGGCAACAATGAGCT 59.846 52.632 0.00 0.00 39.74 4.09
2690 2733 4.277423 GTCTATCTACCTCTCCTGTGAAGC 59.723 50.000 0.00 0.00 0.00 3.86
2693 2736 3.181453 CGGTCTATCTACCTCTCCTGTGA 60.181 52.174 0.00 0.00 37.39 3.58
2695 2738 2.106857 CCGGTCTATCTACCTCTCCTGT 59.893 54.545 0.00 0.00 37.39 4.00
2696 2739 2.553466 CCCGGTCTATCTACCTCTCCTG 60.553 59.091 0.00 0.00 37.39 3.86
2697 2740 1.706305 CCCGGTCTATCTACCTCTCCT 59.294 57.143 0.00 0.00 37.39 3.69
2698 2741 1.704070 TCCCGGTCTATCTACCTCTCC 59.296 57.143 0.00 0.00 37.39 3.71
2699 2742 2.290450 CCTCCCGGTCTATCTACCTCTC 60.290 59.091 0.00 0.00 37.39 3.20
2701 2744 1.704070 TCCTCCCGGTCTATCTACCTC 59.296 57.143 0.00 0.00 37.39 3.85
2702 2745 1.706305 CTCCTCCCGGTCTATCTACCT 59.294 57.143 0.00 0.00 37.39 3.08
2703 2746 1.272037 CCTCCTCCCGGTCTATCTACC 60.272 61.905 0.00 0.00 36.08 3.18
2705 2748 1.986631 CTCCTCCTCCCGGTCTATCTA 59.013 57.143 0.00 0.00 0.00 1.98
2706 2749 0.774908 CTCCTCCTCCCGGTCTATCT 59.225 60.000 0.00 0.00 0.00 1.98
2707 2750 0.251430 CCTCCTCCTCCCGGTCTATC 60.251 65.000 0.00 0.00 0.00 2.08
2708 2751 1.854874 CCTCCTCCTCCCGGTCTAT 59.145 63.158 0.00 0.00 0.00 1.98
2709 2752 3.070987 GCCTCCTCCTCCCGGTCTA 62.071 68.421 0.00 0.00 0.00 2.59
2710 2753 4.467107 GCCTCCTCCTCCCGGTCT 62.467 72.222 0.00 0.00 0.00 3.85
2794 2846 2.759795 GCCTGGCTGTCCCTTCTT 59.240 61.111 12.43 0.00 0.00 2.52
2816 2868 2.742116 TTCCTCCCATAGTGCCGCC 61.742 63.158 0.00 0.00 0.00 6.13
2818 2870 0.251916 TTGTTCCTCCCATAGTGCCG 59.748 55.000 0.00 0.00 0.00 5.69
2819 2871 1.282157 ACTTGTTCCTCCCATAGTGCC 59.718 52.381 0.00 0.00 0.00 5.01
2820 2872 2.633488 GACTTGTTCCTCCCATAGTGC 58.367 52.381 0.00 0.00 0.00 4.40
2824 2876 3.615592 CGTTTCGACTTGTTCCTCCCATA 60.616 47.826 0.00 0.00 0.00 2.74
2825 2877 2.779506 GTTTCGACTTGTTCCTCCCAT 58.220 47.619 0.00 0.00 0.00 4.00
2826 2878 1.539496 CGTTTCGACTTGTTCCTCCCA 60.539 52.381 0.00 0.00 0.00 4.37
2827 2879 1.145803 CGTTTCGACTTGTTCCTCCC 58.854 55.000 0.00 0.00 0.00 4.30
2828 2880 2.059541 CTCGTTTCGACTTGTTCCTCC 58.940 52.381 0.00 0.00 0.00 4.30
2829 2881 2.725206 GTCTCGTTTCGACTTGTTCCTC 59.275 50.000 0.00 0.00 0.00 3.71
2831 2883 2.466846 TGTCTCGTTTCGACTTGTTCC 58.533 47.619 0.00 0.00 32.70 3.62
2832 2884 2.471743 CCTGTCTCGTTTCGACTTGTTC 59.528 50.000 0.00 0.00 32.70 3.18
2912 2994 2.238084 TAGGAGAAGCAAGAGCAGGA 57.762 50.000 0.00 0.00 45.49 3.86
2913 2995 3.557228 AATAGGAGAAGCAAGAGCAGG 57.443 47.619 0.00 0.00 45.49 4.85
2914 2996 4.376146 GGTAATAGGAGAAGCAAGAGCAG 58.624 47.826 0.00 0.00 45.49 4.24
2915 2997 3.134804 GGGTAATAGGAGAAGCAAGAGCA 59.865 47.826 0.00 0.00 45.49 4.26
2916 2998 3.495276 GGGGTAATAGGAGAAGCAAGAGC 60.495 52.174 0.00 0.00 42.56 4.09
2917 2999 3.970640 AGGGGTAATAGGAGAAGCAAGAG 59.029 47.826 0.00 0.00 0.00 2.85
2918 3000 4.008916 AGGGGTAATAGGAGAAGCAAGA 57.991 45.455 0.00 0.00 0.00 3.02
2935 3093 4.405680 AGTGTCTTTGGAAAAGAAAAGGGG 59.594 41.667 4.09 0.00 34.75 4.79
2938 3096 5.291858 GGCAAGTGTCTTTGGAAAAGAAAAG 59.708 40.000 4.09 0.00 35.20 2.27
3068 3226 2.543430 GCTAGCAAATAGAGTGCAGAGC 59.457 50.000 10.63 7.33 44.74 4.09
3091 3249 4.141482 ACAGGTGGACAGTGTTATTCAAGT 60.141 41.667 0.00 0.00 0.00 3.16
3098 3256 2.301870 GGATCACAGGTGGACAGTGTTA 59.698 50.000 0.00 0.00 34.94 2.41
3292 3455 8.064336 AGCGTACTAGAATATTTATACCCCAG 57.936 38.462 0.00 0.00 0.00 4.45
3381 3544 8.525316 TCTCGTCAAACTATAAGGTAAATCACA 58.475 33.333 0.00 0.00 0.00 3.58
3470 3633 3.132289 TCGTCCAACCTTCTCCATATGAC 59.868 47.826 3.65 0.00 0.00 3.06
3476 3639 0.685097 CCTTCGTCCAACCTTCTCCA 59.315 55.000 0.00 0.00 0.00 3.86
3556 3719 9.891828 TCAAATTACAACAAGTGTCACAATATC 57.108 29.630 5.62 0.00 41.98 1.63
3563 3726 5.301551 AGGCATCAAATTACAACAAGTGTCA 59.698 36.000 0.00 0.00 41.98 3.58
3586 3749 8.935844 TCATTAAGCAATACTACAGTTGTCAAG 58.064 33.333 0.00 0.00 0.00 3.02
3620 3783 7.936301 GGATTTCTCTAGCTCACTCCATAAATT 59.064 37.037 0.00 0.00 0.00 1.82
3632 3795 5.506649 CCAGTAGTTCGGATTTCTCTAGCTC 60.507 48.000 0.00 0.00 0.00 4.09
3634 3797 4.500035 CCCAGTAGTTCGGATTTCTCTAGC 60.500 50.000 0.00 0.00 0.00 3.42
3646 3809 1.448540 CAGCAGGCCCAGTAGTTCG 60.449 63.158 0.00 0.00 0.00 3.95
3664 3827 6.983890 ACACATAAGGGTCAAAAATTCACAAC 59.016 34.615 0.00 0.00 0.00 3.32
3714 3877 5.182950 TGATAGCAACACCATACCAAACAAG 59.817 40.000 0.00 0.00 0.00 3.16
3794 4085 9.669353 CAGCATAACTATTTTCATGTGATTACC 57.331 33.333 0.00 0.00 0.00 2.85
3857 4148 9.620660 GGAACAACTTTATGTATACAACCAAAG 57.379 33.333 23.19 23.19 33.35 2.77
3894 4185 1.137282 GCTACTCCAGTCTGGGCTTAC 59.863 57.143 19.11 2.96 38.32 2.34
3962 4253 4.488879 GCTAGTTTTTCATTCCTTGGCAG 58.511 43.478 0.00 0.00 0.00 4.85
4003 4294 6.759497 AAGACAGCATAACCAAATACCTTC 57.241 37.500 0.00 0.00 0.00 3.46
4205 4496 2.669569 CCGCTGACCCAACACCTG 60.670 66.667 0.00 0.00 0.00 4.00
4356 4647 9.628500 TTAATCTCATAGCAAGACTACTAGACA 57.372 33.333 0.00 0.00 31.24 3.41
4401 4692 2.952310 GCAAGAGTTTTGTTCCCTGTCT 59.048 45.455 0.00 0.00 0.00 3.41
4404 4695 2.294512 GGAGCAAGAGTTTTGTTCCCTG 59.705 50.000 15.90 0.00 41.94 4.45
4526 4844 9.310449 AGAAACCTAGTGAGAAAACTCTGTATA 57.690 33.333 0.00 0.00 0.00 1.47
4688 5008 9.475620 TGGTCTGAATGAGAAGTAAGTAGATTA 57.524 33.333 0.00 0.00 30.26 1.75
4689 5009 8.367660 TGGTCTGAATGAGAAGTAAGTAGATT 57.632 34.615 0.00 0.00 30.26 2.40
4690 5010 7.962995 TGGTCTGAATGAGAAGTAAGTAGAT 57.037 36.000 0.00 0.00 30.26 1.98
4691 5011 7.631594 GCATGGTCTGAATGAGAAGTAAGTAGA 60.632 40.741 0.00 0.00 30.26 2.59
4692 5012 6.478344 GCATGGTCTGAATGAGAAGTAAGTAG 59.522 42.308 0.00 0.00 30.26 2.57
4693 5013 6.341316 GCATGGTCTGAATGAGAAGTAAGTA 58.659 40.000 0.00 0.00 30.26 2.24
4694 5014 5.181748 GCATGGTCTGAATGAGAAGTAAGT 58.818 41.667 0.00 0.00 30.26 2.24
4695 5015 4.269603 CGCATGGTCTGAATGAGAAGTAAG 59.730 45.833 0.00 0.00 30.26 2.34
4696 5016 4.081697 TCGCATGGTCTGAATGAGAAGTAA 60.082 41.667 0.00 0.00 31.96 2.24
4697 5017 3.447229 TCGCATGGTCTGAATGAGAAGTA 59.553 43.478 0.00 0.00 31.96 2.24
4698 5018 2.234661 TCGCATGGTCTGAATGAGAAGT 59.765 45.455 0.00 0.00 31.96 3.01
4699 5019 2.606725 GTCGCATGGTCTGAATGAGAAG 59.393 50.000 0.00 0.00 35.93 2.85
4700 5020 2.234661 AGTCGCATGGTCTGAATGAGAA 59.765 45.455 0.00 0.00 35.93 2.87
4701 5021 1.827344 AGTCGCATGGTCTGAATGAGA 59.173 47.619 0.00 0.00 32.37 3.27
4702 5022 2.306341 AGTCGCATGGTCTGAATGAG 57.694 50.000 0.00 0.00 0.00 2.90
4717 5037 9.625009 CGAAAAGAATGACATAGAAAATAGTCG 57.375 33.333 0.00 0.00 33.83 4.18
4743 5063 9.770097 TGAAGTCCTCTGATATTGATATTGTTC 57.230 33.333 0.00 0.00 0.00 3.18
4788 5110 2.228822 GCCACAATGTCACAACTTAGGG 59.771 50.000 0.00 0.00 0.00 3.53
4833 5155 6.638873 CGATACTTTTGCAACCACATACAAAA 59.361 34.615 0.00 0.00 39.09 2.44
4834 5156 6.017026 TCGATACTTTTGCAACCACATACAAA 60.017 34.615 0.00 0.00 0.00 2.83
4837 5159 5.321516 GTCGATACTTTTGCAACCACATAC 58.678 41.667 0.00 0.00 0.00 2.39
4906 5228 5.566627 GCATTTTTCTTAAAGCCCTGCACTA 60.567 40.000 0.00 0.00 0.00 2.74
4955 5277 8.894409 TTCATATTGCTTCGTAATCACAAAAG 57.106 30.769 0.00 0.00 0.00 2.27
5195 5525 8.556589 TCCTAAAAGGATCTACCAAATTCATCA 58.443 33.333 0.00 0.00 40.06 3.07
5230 5560 6.342338 TGACTCTTAACTCTTAAGTCCCAC 57.658 41.667 1.63 0.00 42.49 4.61
5454 5825 6.183360 ACCATGCCTGACAAAATCAACTAAAA 60.183 34.615 0.00 0.00 36.69 1.52
5568 5939 9.881773 AGTAACCCCAATGATTTATATCACATT 57.118 29.630 0.00 0.00 43.29 2.71
5569 5940 9.300681 CAGTAACCCCAATGATTTATATCACAT 57.699 33.333 0.00 0.00 43.29 3.21
5570 5941 8.278639 ACAGTAACCCCAATGATTTATATCACA 58.721 33.333 0.00 0.00 43.29 3.58
5571 5942 8.691661 ACAGTAACCCCAATGATTTATATCAC 57.308 34.615 0.00 0.00 43.29 3.06
5573 5944 8.947115 GCTACAGTAACCCCAATGATTTATATC 58.053 37.037 0.00 0.00 0.00 1.63
5574 5945 8.444783 TGCTACAGTAACCCCAATGATTTATAT 58.555 33.333 0.00 0.00 0.00 0.86
5575 5946 7.807198 TGCTACAGTAACCCCAATGATTTATA 58.193 34.615 0.00 0.00 0.00 0.98
5576 5947 6.668645 TGCTACAGTAACCCCAATGATTTAT 58.331 36.000 0.00 0.00 0.00 1.40
5577 5948 6.068461 TGCTACAGTAACCCCAATGATTTA 57.932 37.500 0.00 0.00 0.00 1.40
5578 5949 4.929479 TGCTACAGTAACCCCAATGATTT 58.071 39.130 0.00 0.00 0.00 2.17
5579 5950 4.584638 TGCTACAGTAACCCCAATGATT 57.415 40.909 0.00 0.00 0.00 2.57
5580 5951 4.584638 TTGCTACAGTAACCCCAATGAT 57.415 40.909 0.00 0.00 0.00 2.45
5671 6047 8.128322 ACACAATTATGCCTTGGTATTTTACA 57.872 30.769 0.00 0.00 0.00 2.41
5685 6061 5.807011 GGAACATGGAAGAACACAATTATGC 59.193 40.000 0.00 0.00 0.00 3.14
5723 6099 8.471609 TCTTGTAATGTCGACACATCCTTATTA 58.528 33.333 22.71 10.05 42.89 0.98
5776 6152 3.520721 TCAAAGAGATGAAGCCATGGAGA 59.479 43.478 18.40 0.00 32.09 3.71
5853 6229 6.272090 ACCCACAACTAAAATCCCATCAAAAT 59.728 34.615 0.00 0.00 0.00 1.82
5863 6239 2.560981 CCACCCACCCACAACTAAAATC 59.439 50.000 0.00 0.00 0.00 2.17
5869 6245 3.425014 TGCCACCCACCCACAACT 61.425 61.111 0.00 0.00 0.00 3.16
5870 6246 2.912025 CTGCCACCCACCCACAAC 60.912 66.667 0.00 0.00 0.00 3.32
5871 6247 2.522198 AAACTGCCACCCACCCACAA 62.522 55.000 0.00 0.00 0.00 3.33
5873 6249 1.334384 AAAAACTGCCACCCACCCAC 61.334 55.000 0.00 0.00 0.00 4.61
5874 6250 1.002274 AAAAACTGCCACCCACCCA 59.998 52.632 0.00 0.00 0.00 4.51
5875 6251 3.964108 AAAAACTGCCACCCACCC 58.036 55.556 0.00 0.00 0.00 4.61
5891 6267 5.754406 CAGAAAATGCCATGTCACTTTGAAA 59.246 36.000 0.00 0.00 0.00 2.69
5915 6291 0.390340 TTCTCAGAGCGACATGGCAC 60.390 55.000 0.00 0.00 34.64 5.01
5916 6292 0.321346 TTTCTCAGAGCGACATGGCA 59.679 50.000 0.00 0.00 34.64 4.92
5917 6293 0.723981 GTTTCTCAGAGCGACATGGC 59.276 55.000 0.00 0.00 0.00 4.40
5930 6306 3.056328 GCGGGGTGGCAGTTTCTC 61.056 66.667 0.00 0.00 0.00 2.87
6012 6389 8.715191 TGTGCAACTTTAAATCAAAATGTTCT 57.285 26.923 0.00 0.00 38.04 3.01
6119 6507 4.929819 AAAGCCGGTTAGTTTTGATGTT 57.070 36.364 1.90 0.00 0.00 2.71
6184 6572 1.938577 GCTACATGGTGATGTGCAGAG 59.061 52.381 0.00 0.00 43.03 3.35
6186 6574 1.019673 GGCTACATGGTGATGTGCAG 58.980 55.000 0.00 0.00 43.03 4.41
6347 6744 1.028130 TCCACAAAACAAGCATCGCA 58.972 45.000 0.00 0.00 0.00 5.10
6523 6920 8.901748 CACCAATGAAATTTTTGTAGAACTACG 58.098 33.333 7.36 0.00 34.70 3.51
6646 7043 6.074648 TCCACAGGAATAAATTTCCAACAGT 58.925 36.000 7.10 0.00 41.00 3.55
6685 7082 5.127031 AGGTATTTTGAATGTGAAATCCCCG 59.873 40.000 0.00 0.00 0.00 5.73
6748 7145 2.540101 CCATCTATTTCGTCGGAACAGC 59.460 50.000 0.00 0.00 0.00 4.40
6751 7148 3.802685 CCTTCCATCTATTTCGTCGGAAC 59.197 47.826 0.00 0.00 0.00 3.62
6752 7149 3.702548 TCCTTCCATCTATTTCGTCGGAA 59.297 43.478 0.00 0.00 0.00 4.30
6753 7150 3.293337 TCCTTCCATCTATTTCGTCGGA 58.707 45.455 0.00 0.00 0.00 4.55
6754 7151 3.728076 TCCTTCCATCTATTTCGTCGG 57.272 47.619 0.00 0.00 0.00 4.79
6755 7152 4.430007 TGTTCCTTCCATCTATTTCGTCG 58.570 43.478 0.00 0.00 0.00 5.12
6756 7153 6.927294 AATGTTCCTTCCATCTATTTCGTC 57.073 37.500 0.00 0.00 0.00 4.20
6757 7154 8.801882 TTAAATGTTCCTTCCATCTATTTCGT 57.198 30.769 0.00 0.00 0.00 3.85
6758 7155 9.503427 GTTTAAATGTTCCTTCCATCTATTTCG 57.497 33.333 0.00 0.00 0.00 3.46
6759 7156 9.803315 GGTTTAAATGTTCCTTCCATCTATTTC 57.197 33.333 0.00 0.00 0.00 2.17
6760 7157 8.758829 GGGTTTAAATGTTCCTTCCATCTATTT 58.241 33.333 0.00 0.00 0.00 1.40
6761 7158 7.898636 TGGGTTTAAATGTTCCTTCCATCTATT 59.101 33.333 0.00 0.00 0.00 1.73
6762 7159 7.418378 TGGGTTTAAATGTTCCTTCCATCTAT 58.582 34.615 0.00 0.00 0.00 1.98
6763 7160 6.795590 TGGGTTTAAATGTTCCTTCCATCTA 58.204 36.000 0.00 0.00 0.00 1.98
6764 7161 5.650283 TGGGTTTAAATGTTCCTTCCATCT 58.350 37.500 0.00 0.00 0.00 2.90
6785 7182 1.067635 CAAAGAACGGAATTGGCCTGG 60.068 52.381 3.32 0.00 0.00 4.45
6825 7226 5.652452 GCCCGGCTTATATTCTAATCCAAAT 59.348 40.000 0.71 0.00 0.00 2.32
6826 7227 5.007682 GCCCGGCTTATATTCTAATCCAAA 58.992 41.667 0.71 0.00 0.00 3.28
6827 7228 4.042311 TGCCCGGCTTATATTCTAATCCAA 59.958 41.667 11.61 0.00 0.00 3.53
6828 7229 3.585289 TGCCCGGCTTATATTCTAATCCA 59.415 43.478 11.61 0.00 0.00 3.41
6829 7230 3.939592 GTGCCCGGCTTATATTCTAATCC 59.060 47.826 11.61 0.00 0.00 3.01
6830 7231 3.617263 CGTGCCCGGCTTATATTCTAATC 59.383 47.826 11.61 0.00 0.00 1.75
6831 7232 3.596214 CGTGCCCGGCTTATATTCTAAT 58.404 45.455 11.61 0.00 0.00 1.73
6834 7235 3.606886 CGTGCCCGGCTTATATTCT 57.393 52.632 11.61 0.00 0.00 2.40
6851 7252 7.989826 AGTCAAATCAAGAATCTAAAATCCCG 58.010 34.615 0.00 0.00 0.00 5.14
6860 7261 8.401490 AGTTTTGCTAGTCAAATCAAGAATCT 57.599 30.769 16.22 0.00 43.53 2.40
6906 7307 9.443323 TGGAAAGTTCATTCAACGATTAATCTA 57.557 29.630 13.45 0.00 40.32 1.98
6942 7343 8.567948 ACTAGCAAAACATGTATAATATGCCAC 58.432 33.333 0.00 0.00 33.19 5.01
6943 7344 8.690203 ACTAGCAAAACATGTATAATATGCCA 57.310 30.769 0.00 0.00 33.19 4.92
6952 7353 9.935682 CATCGATTTAACTAGCAAAACATGTAT 57.064 29.630 0.00 0.00 0.00 2.29
6953 7354 9.157104 TCATCGATTTAACTAGCAAAACATGTA 57.843 29.630 0.00 0.00 0.00 2.29
6954 7355 7.962918 GTCATCGATTTAACTAGCAAAACATGT 59.037 33.333 0.00 0.00 0.00 3.21
6955 7356 7.429340 GGTCATCGATTTAACTAGCAAAACATG 59.571 37.037 0.00 0.00 0.00 3.21
6956 7357 7.336931 AGGTCATCGATTTAACTAGCAAAACAT 59.663 33.333 0.00 0.00 0.00 2.71
6957 7358 6.653320 AGGTCATCGATTTAACTAGCAAAACA 59.347 34.615 0.00 0.00 0.00 2.83
6958 7359 7.073342 AGGTCATCGATTTAACTAGCAAAAC 57.927 36.000 0.00 0.00 0.00 2.43
6959 7360 8.780846 TTAGGTCATCGATTTAACTAGCAAAA 57.219 30.769 0.00 0.00 0.00 2.44
6960 7361 8.780846 TTTAGGTCATCGATTTAACTAGCAAA 57.219 30.769 0.00 0.00 0.00 3.68
6961 7362 8.826710 CATTTAGGTCATCGATTTAACTAGCAA 58.173 33.333 0.00 0.00 0.00 3.91
6962 7363 7.042051 GCATTTAGGTCATCGATTTAACTAGCA 60.042 37.037 0.00 0.00 0.00 3.49
6963 7364 7.171678 AGCATTTAGGTCATCGATTTAACTAGC 59.828 37.037 0.00 0.17 0.00 3.42
6964 7365 8.594881 AGCATTTAGGTCATCGATTTAACTAG 57.405 34.615 0.00 0.00 0.00 2.57
6990 7391 6.422100 CCAGATGGAAATATAAGTCAGACACG 59.578 42.308 2.66 0.00 37.39 4.49
7013 7821 2.439507 GGCATTTCATCTACTCCCTCCA 59.560 50.000 0.00 0.00 0.00 3.86
7014 7822 2.708325 AGGCATTTCATCTACTCCCTCC 59.292 50.000 0.00 0.00 0.00 4.30
7015 7823 4.429854 AAGGCATTTCATCTACTCCCTC 57.570 45.455 0.00 0.00 0.00 4.30
7016 7824 5.975988 TTAAGGCATTTCATCTACTCCCT 57.024 39.130 0.00 0.00 0.00 4.20
7068 7882 2.351447 CGTCCTCGAGCTCAGTAACAAA 60.351 50.000 15.40 0.00 39.71 2.83
7096 8128 2.945008 GCATCCGTGAAGATCATTTGGA 59.055 45.455 0.00 0.00 32.35 3.53
7120 8152 3.710722 CCGGCTGCCTGAAGAGGT 61.711 66.667 17.92 0.00 42.15 3.85
7121 8153 4.479993 CCCGGCTGCCTGAAGAGG 62.480 72.222 17.92 9.07 43.19 3.69
7137 8169 4.048470 GTTGAGCCCCCACCCTCC 62.048 72.222 0.00 0.00 0.00 4.30
7155 8187 4.761739 GTGTTCCACAAATCTCAATCCTCA 59.238 41.667 0.00 0.00 34.08 3.86
7165 8197 3.999663 CTCTCTCAGGTGTTCCACAAATC 59.000 47.826 0.00 0.00 35.86 2.17
7176 8208 1.136695 GCATCAGTCCTCTCTCAGGTG 59.863 57.143 0.00 0.00 43.95 4.00
7198 8230 3.533068 TGATCTTTCAATCCTCCCCCATT 59.467 43.478 0.00 0.00 0.00 3.16
7231 8263 0.043032 ACCCCGAACCATAGGTACCA 59.957 55.000 15.94 0.00 33.12 3.25
7232 8264 0.466963 CACCCCGAACCATAGGTACC 59.533 60.000 2.73 2.73 33.12 3.34
7295 8327 6.927294 AGACAACTTCGTTCAAAGAAGAAT 57.073 33.333 18.63 5.42 45.78 2.40
7296 8328 6.737254 AAGACAACTTCGTTCAAAGAAGAA 57.263 33.333 18.63 2.81 45.78 2.52
7309 8341 8.958043 CAAGCAATTACAAGTTAAGACAACTTC 58.042 33.333 0.00 0.00 38.32 3.01
7312 8344 8.129211 ACTCAAGCAATTACAAGTTAAGACAAC 58.871 33.333 0.00 0.00 0.00 3.32
7313 8345 8.220755 ACTCAAGCAATTACAAGTTAAGACAA 57.779 30.769 0.00 0.00 0.00 3.18
7314 8346 7.801716 ACTCAAGCAATTACAAGTTAAGACA 57.198 32.000 0.00 0.00 0.00 3.41
7317 8349 9.559958 CCATAACTCAAGCAATTACAAGTTAAG 57.440 33.333 0.00 0.00 34.12 1.85
7318 8350 9.073475 ACCATAACTCAAGCAATTACAAGTTAA 57.927 29.630 0.00 0.00 34.12 2.01
7319 8351 8.630054 ACCATAACTCAAGCAATTACAAGTTA 57.370 30.769 0.00 0.00 34.70 2.24
7320 8352 7.524717 ACCATAACTCAAGCAATTACAAGTT 57.475 32.000 0.00 0.00 0.00 2.66
7321 8353 7.370383 CAACCATAACTCAAGCAATTACAAGT 58.630 34.615 0.00 0.00 0.00 3.16
7322 8354 6.808212 CCAACCATAACTCAAGCAATTACAAG 59.192 38.462 0.00 0.00 0.00 3.16
7390 8435 6.426937 GGCAACATAGAGTCACACTAGAAAAA 59.573 38.462 0.00 0.00 0.00 1.94
7391 8436 5.932303 GGCAACATAGAGTCACACTAGAAAA 59.068 40.000 0.00 0.00 0.00 2.29
7393 8438 4.526650 TGGCAACATAGAGTCACACTAGAA 59.473 41.667 0.00 0.00 46.17 2.10
7410 8455 0.102300 GAACAACCTGGTGTGGCAAC 59.898 55.000 0.00 0.00 0.00 4.17
7411 8456 1.040339 GGAACAACCTGGTGTGGCAA 61.040 55.000 0.00 0.00 35.41 4.52
7412 8457 1.454847 GGAACAACCTGGTGTGGCA 60.455 57.895 0.00 0.00 35.41 4.92
7413 8458 2.200337 GGGAACAACCTGGTGTGGC 61.200 63.158 0.00 0.00 38.98 5.01
7414 8459 1.896660 CGGGAACAACCTGGTGTGG 60.897 63.158 0.00 0.00 41.14 4.17
7415 8460 3.744559 CGGGAACAACCTGGTGTG 58.255 61.111 0.00 3.79 41.14 3.82
7421 8466 0.110486 ATTGAGCACGGGAACAACCT 59.890 50.000 0.00 0.00 38.98 3.50
7431 8476 6.247791 CGCATGATTTATATTGATTGAGCACG 59.752 38.462 0.00 0.00 0.00 5.34
7441 8486 6.091849 CAGGAGAGTCCGCATGATTTATATTG 59.908 42.308 0.00 0.00 42.75 1.90
7455 8500 1.333636 ATTGAGGGCAGGAGAGTCCG 61.334 60.000 0.00 0.00 42.75 4.79
7458 8503 1.661463 TTGATTGAGGGCAGGAGAGT 58.339 50.000 0.00 0.00 0.00 3.24
7459 8504 4.133078 GTTATTGATTGAGGGCAGGAGAG 58.867 47.826 0.00 0.00 0.00 3.20
7481 8526 1.224069 CGTAGGAGGCCGCATGATTG 61.224 60.000 9.31 0.00 0.00 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.