Multiple sequence alignment - TraesCS7D01G229000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G229000 chr7D 100.000 3860 0 0 1 3860 189169432 189173291 0.000000e+00 7129
1 TraesCS7D01G229000 chr7B 94.555 3067 142 14 814 3860 333751112 333754173 0.000000e+00 4715
2 TraesCS7D01G229000 chr7B 88.041 485 52 6 1 482 74298094 74297613 1.560000e-158 569
3 TraesCS7D01G229000 chr7B 83.765 425 50 10 371 779 333750621 333751042 6.050000e-103 385
4 TraesCS7D01G229000 chr7A 93.232 3029 155 22 45 3035 194809795 194806779 0.000000e+00 4412
5 TraesCS7D01G229000 chr7A 91.446 830 57 6 3033 3860 194804036 194803219 0.000000e+00 1127
6 TraesCS7D01G229000 chr7A 89.095 486 48 5 1 482 17392731 17393215 1.980000e-167 599
7 TraesCS7D01G229000 chr5B 90.329 486 41 6 1 482 578440175 578439692 1.960000e-177 632
8 TraesCS7D01G229000 chr5B 90.123 486 41 7 1 482 639761090 639761572 3.270000e-175 625
9 TraesCS7D01G229000 chr5B 88.683 486 48 5 1 482 639761707 639762189 1.550000e-163 586
10 TraesCS7D01G229000 chr6B 89.117 487 47 6 1 482 124390333 124390818 5.520000e-168 601
11 TraesCS7D01G229000 chr6B 88.296 487 49 7 1 482 124390059 124390542 9.300000e-161 577
12 TraesCS7D01G229000 chr1B 88.843 484 50 4 1 482 120345350 120345831 3.320000e-165 592
13 TraesCS7D01G229000 chr3B 88.247 485 53 4 1 482 133084922 133085405 9.300000e-161 577
14 TraesCS7D01G229000 chr5A 79.894 567 103 11 1799 2361 407545787 407545228 4.640000e-109 405
15 TraesCS7D01G229000 chr5D 79.189 567 107 9 1799 2361 313371422 313370863 2.180000e-102 383


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G229000 chr7D 189169432 189173291 3859 False 7129.0 7129 100.0000 1 3860 1 chr7D.!!$F1 3859
1 TraesCS7D01G229000 chr7B 333750621 333754173 3552 False 2550.0 4715 89.1600 371 3860 2 chr7B.!!$F1 3489
2 TraesCS7D01G229000 chr7A 194803219 194809795 6576 True 2769.5 4412 92.3390 45 3860 2 chr7A.!!$R1 3815
3 TraesCS7D01G229000 chr5B 639761090 639762189 1099 False 605.5 625 89.4030 1 482 2 chr5B.!!$F1 481
4 TraesCS7D01G229000 chr6B 124390059 124390818 759 False 589.0 601 88.7065 1 482 2 chr6B.!!$F1 481
5 TraesCS7D01G229000 chr5A 407545228 407545787 559 True 405.0 405 79.8940 1799 2361 1 chr5A.!!$R1 562
6 TraesCS7D01G229000 chr5D 313370863 313371422 559 True 383.0 383 79.1890 1799 2361 1 chr5D.!!$R1 562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
302 305 0.245539 TTCACTTTCCGGCCTCTACG 59.754 55.0 0.00 0.0 0.0 3.51 F
1628 2323 0.030908 GAGATAACGGCGGTGGAGAG 59.969 60.0 8.19 0.0 0.0 3.20 F
1680 2375 0.744414 CGTTGCGGATTGGTGAGGAT 60.744 55.0 0.00 0.0 0.0 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1679 2374 0.622665 CTGGCCAACTTCCTCCTCAT 59.377 55.000 7.01 0.0 0.00 2.90 R
2478 3173 1.288439 CTCGGCGATGAGGATGAGG 59.712 63.158 11.27 0.0 32.18 3.86 R
3641 7101 1.137675 TCTCTGATTGTGCCATCTCCG 59.862 52.381 0.00 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.335647 CCGGCCTCTGCACCAACT 62.336 66.667 0.00 0.00 40.13 3.16
38 39 1.448540 CGGCCTCTGCACCAACTAG 60.449 63.158 0.00 0.00 40.13 2.57
43 44 2.398588 CCTCTGCACCAACTAGGGATA 58.601 52.381 0.00 0.00 43.89 2.59
146 149 0.395173 GGTTCCACCACACACCAAGT 60.395 55.000 0.00 0.00 38.42 3.16
149 152 3.018149 GTTCCACCACACACCAAGTTTA 58.982 45.455 0.00 0.00 0.00 2.01
158 161 5.507315 CCACACACCAAGTTTAATCCTCAAC 60.507 44.000 0.00 0.00 0.00 3.18
207 210 9.927081 ATTACCTGTCAATTCTAGGAATTGAAT 57.073 29.630 26.66 17.24 45.06 2.57
216 219 2.781681 AGGAATTGAATTCGGGTCGT 57.218 45.000 11.39 0.00 40.17 4.34
218 221 2.747446 AGGAATTGAATTCGGGTCGTTG 59.253 45.455 11.39 0.00 40.17 4.10
235 238 2.124736 GGGCTGCAGAACCGCATA 60.125 61.111 20.43 0.00 42.06 3.14
254 257 1.352622 ACCCAACCACTGAGCCAAGA 61.353 55.000 0.00 0.00 0.00 3.02
274 277 7.651808 CCAAGACTCTCTTTGCTTAAAAATGA 58.348 34.615 0.00 0.00 33.78 2.57
276 279 8.562892 CAAGACTCTCTTTGCTTAAAAATGAGA 58.437 33.333 12.13 12.13 33.78 3.27
300 303 3.263425 AGATTTTCACTTTCCGGCCTCTA 59.737 43.478 0.00 0.00 0.00 2.43
302 305 0.245539 TTCACTTTCCGGCCTCTACG 59.754 55.000 0.00 0.00 0.00 3.51
321 324 1.202639 CGCCAACTAGGGATGCATACA 60.203 52.381 11.97 0.00 38.09 2.29
324 327 3.685550 GCCAACTAGGGATGCATACAACT 60.686 47.826 11.97 1.79 38.09 3.16
356 359 9.322773 AGTATGAGTGACAAGATAAACATGATG 57.677 33.333 0.00 0.00 0.00 3.07
408 411 9.471702 AAGATATTTCTTGATGACTGGTTTCAT 57.528 29.630 0.00 0.00 40.74 2.57
436 439 7.341256 ACACATCAAGCTTGATCCTCAATAAAT 59.659 33.333 33.95 11.51 45.62 1.40
440 443 5.393068 AGCTTGATCCTCAATAAATGGGA 57.607 39.130 0.00 0.00 35.59 4.37
472 823 7.233553 CCCTATGTATCACCTGTCAATTCTAGA 59.766 40.741 0.00 0.00 0.00 2.43
482 833 9.219603 CACCTGTCAATTCTAGAAATTGAACTA 57.780 33.333 21.55 14.44 45.06 2.24
484 835 9.658799 CCTGTCAATTCTAGAAATTGAACTAGA 57.341 33.333 21.55 10.97 45.06 2.43
488 1125 7.764443 TCAATTCTAGAAATTGAACTAGACCCG 59.236 37.037 19.38 7.66 42.80 5.28
541 1178 6.319141 ACTTTTAAGCTTCATGTGTCCTTC 57.681 37.500 0.00 0.00 0.00 3.46
559 1196 2.225068 TCGATCCGCCTTTCATCTTC 57.775 50.000 0.00 0.00 0.00 2.87
570 1207 4.873259 GCCTTTCATCTTCTTGGAGACTAC 59.127 45.833 0.00 0.00 0.00 2.73
578 1215 8.762645 TCATCTTCTTGGAGACTACAAATACAT 58.237 33.333 0.83 0.00 0.00 2.29
637 1275 2.958818 TGTGTGTTACTGTCTCCCTCT 58.041 47.619 0.00 0.00 0.00 3.69
680 1318 7.122650 TGGATCTTTGGTATCACTTGATTTTCC 59.877 37.037 0.00 0.00 36.05 3.13
689 1327 2.095059 CACTTGATTTTCCCTTCTGGCG 60.095 50.000 0.00 0.00 0.00 5.69
695 1333 3.992943 TTTTCCCTTCTGGCGATAGAA 57.007 42.857 0.00 0.00 35.51 2.10
746 1385 9.613428 TTGTATCAATCCATTTTTAGACGAGAT 57.387 29.630 0.00 0.00 0.00 2.75
767 1406 7.348080 AGATGTGAGTCTCCGTGATTTTATA 57.652 36.000 0.00 0.00 0.00 0.98
769 1408 7.923344 AGATGTGAGTCTCCGTGATTTTATAAG 59.077 37.037 0.00 0.00 0.00 1.73
770 1409 6.338146 TGTGAGTCTCCGTGATTTTATAAGG 58.662 40.000 0.00 0.00 0.00 2.69
771 1410 5.234543 GTGAGTCTCCGTGATTTTATAAGGC 59.765 44.000 0.00 0.00 0.00 4.35
772 1411 4.369182 AGTCTCCGTGATTTTATAAGGCG 58.631 43.478 0.00 0.00 0.00 5.52
892 1568 4.873746 TGCCAAGTACTATCTATCCTGC 57.126 45.455 0.00 0.00 0.00 4.85
908 1584 1.093159 CTGCCTCTGTTTGAGATGCC 58.907 55.000 0.00 0.00 45.39 4.40
915 1591 1.938577 CTGTTTGAGATGCCGATCCAG 59.061 52.381 0.00 0.00 0.00 3.86
919 1595 0.397675 TGAGATGCCGATCCAGAGGT 60.398 55.000 0.00 0.00 0.00 3.85
920 1596 0.755686 GAGATGCCGATCCAGAGGTT 59.244 55.000 0.00 0.00 0.00 3.50
1227 1922 1.608717 CGGTGGACAAGGAGGAGGAG 61.609 65.000 0.00 0.00 0.00 3.69
1289 1984 3.461773 CGACCCGGTGATCCTGCT 61.462 66.667 0.00 0.00 0.00 4.24
1350 2045 1.139947 GGAGCTTTCCGTCTCTCCG 59.860 63.158 0.00 0.00 36.18 4.63
1590 2285 4.808238 GCGTCGACGTCGTCCTCC 62.808 72.222 35.48 15.22 42.22 4.30
1627 2322 0.395311 AGAGATAACGGCGGTGGAGA 60.395 55.000 8.19 0.00 0.00 3.71
1628 2323 0.030908 GAGATAACGGCGGTGGAGAG 59.969 60.000 8.19 0.00 0.00 3.20
1646 2341 2.265739 GCTGGAGATGGTGTGCGA 59.734 61.111 0.00 0.00 0.00 5.10
1679 2374 1.375396 CGTTGCGGATTGGTGAGGA 60.375 57.895 0.00 0.00 0.00 3.71
1680 2375 0.744414 CGTTGCGGATTGGTGAGGAT 60.744 55.000 0.00 0.00 0.00 3.24
2631 3326 2.108514 CGATGACAGCGGCACCATT 61.109 57.895 4.91 0.00 0.00 3.16
2698 3393 2.511145 CTCCTGCCTCGAAGCTGC 60.511 66.667 7.65 0.00 0.00 5.25
2773 3468 2.226330 GGGTGTTGCTGTGTTGTCATA 58.774 47.619 0.00 0.00 0.00 2.15
2800 3495 0.622136 TGGATTCATGCAGTGCTCCT 59.378 50.000 17.60 0.00 33.17 3.69
2834 3529 6.532657 GCTTGGTCTGTAATTTTGAATGGATG 59.467 38.462 0.00 0.00 0.00 3.51
2937 3638 7.292120 AGGCTTTAGATCTAGATCAAACCATCT 59.708 37.037 29.83 17.01 40.22 2.90
2986 3689 9.453830 AAGAAAATATACCTAGATCTCAAGGGT 57.546 33.333 14.78 13.35 37.18 4.34
3025 3728 6.988580 TGCAGATCGAAGAAGATTATTCATGT 59.011 34.615 0.00 0.00 43.58 3.21
3130 6578 4.898829 TGTAGATGGTGCATATGTTTGC 57.101 40.909 4.29 0.00 43.07 3.68
3132 6580 2.368439 AGATGGTGCATATGTTTGCGT 58.632 42.857 4.29 0.00 45.77 5.24
3236 6685 6.969993 AAATATATCGAGATCTCTAGGGCC 57.030 41.667 20.26 0.00 0.00 5.80
3246 6695 3.739401 TCTCTAGGGCCGATCATCATA 57.261 47.619 0.00 0.00 0.00 2.15
3255 6704 3.120060 GGCCGATCATCATATTTGCAGAC 60.120 47.826 0.00 0.00 0.00 3.51
3276 6725 7.413438 GCAGACACAAGAAGATTATTCACGAAT 60.413 37.037 0.00 0.00 34.93 3.34
3312 6761 2.174685 TATACCTGCTCTGGCCTTGA 57.825 50.000 3.32 0.99 37.74 3.02
3338 6787 3.002791 CACGAGTGGACAAGTGCATAAT 58.997 45.455 0.00 0.00 32.40 1.28
3365 6814 2.511600 CGAGGCGGGGTGCTTTAG 60.512 66.667 0.00 0.00 45.43 1.85
3380 6829 5.371526 GTGCTTTAGGATCAATGGAGATGA 58.628 41.667 0.00 0.00 0.00 2.92
3465 6914 7.120923 TCAAACAAGTAGTATAGATGTCCCC 57.879 40.000 0.00 0.00 0.00 4.81
3469 6918 7.504926 ACAAGTAGTATAGATGTCCCCAAAA 57.495 36.000 0.00 0.00 0.00 2.44
3470 6919 7.924541 ACAAGTAGTATAGATGTCCCCAAAAA 58.075 34.615 0.00 0.00 0.00 1.94
3471 6920 8.047310 ACAAGTAGTATAGATGTCCCCAAAAAG 58.953 37.037 0.00 0.00 0.00 2.27
3472 6921 7.989947 AGTAGTATAGATGTCCCCAAAAAGA 57.010 36.000 0.00 0.00 0.00 2.52
3473 6922 8.388656 AGTAGTATAGATGTCCCCAAAAAGAA 57.611 34.615 0.00 0.00 0.00 2.52
3474 6923 9.004231 AGTAGTATAGATGTCCCCAAAAAGAAT 57.996 33.333 0.00 0.00 0.00 2.40
3502 6961 7.184862 AGAAAACATATCAAGATCTTTGGGGT 58.815 34.615 4.86 0.00 0.00 4.95
3507 6966 7.643123 ACATATCAAGATCTTTGGGGTTAGTT 58.357 34.615 4.86 0.00 0.00 2.24
3520 6979 5.636123 TGGGGTTAGTTATCTTCTTTGCAA 58.364 37.500 0.00 0.00 0.00 4.08
3557 7017 3.444029 TCATGAACTCATCTCTGGGTCA 58.556 45.455 0.00 0.00 33.95 4.02
3641 7101 1.467342 GTGGGGTGCGTTAAGATCAAC 59.533 52.381 0.00 0.00 0.00 3.18
3697 7158 1.466856 GCATCAGGCATCTCCAACAA 58.533 50.000 0.00 0.00 43.97 2.83
3748 7210 1.879575 TAGGTGTGGATGGAGAAGGG 58.120 55.000 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 9.787435 TCATACTAAAATGGTTGTATGTATCCC 57.213 33.333 0.00 0.00 41.47 3.85
168 171 3.356290 ACAGGTAATGCACAAGGGATTC 58.644 45.455 0.00 0.00 38.60 2.52
171 174 1.702401 TGACAGGTAATGCACAAGGGA 59.298 47.619 0.00 0.00 0.00 4.20
175 178 5.647658 CCTAGAATTGACAGGTAATGCACAA 59.352 40.000 0.00 0.00 34.57 3.33
179 182 7.283127 TCAATTCCTAGAATTGACAGGTAATGC 59.717 37.037 22.54 0.00 40.53 3.56
183 186 9.396022 GAATTCAATTCCTAGAATTGACAGGTA 57.604 33.333 24.95 14.70 43.81 3.08
216 219 4.577677 TGCGGTTCTGCAGCCCAA 62.578 61.111 18.69 3.00 40.62 4.12
226 229 0.322187 AGTGGTTGGGTATGCGGTTC 60.322 55.000 0.00 0.00 0.00 3.62
235 238 1.151450 CTTGGCTCAGTGGTTGGGT 59.849 57.895 0.00 0.00 0.00 4.51
254 257 8.153550 TCTCTCTCATTTTTAAGCAAAGAGAGT 58.846 33.333 20.08 0.00 44.75 3.24
274 277 3.339141 GCCGGAAAGTGAAAATCTCTCT 58.661 45.455 5.05 0.00 0.00 3.10
276 279 2.040412 AGGCCGGAAAGTGAAAATCTCT 59.960 45.455 5.05 0.00 0.00 3.10
300 303 1.128200 TATGCATCCCTAGTTGGCGT 58.872 50.000 0.19 0.00 0.00 5.68
302 305 2.618709 GTTGTATGCATCCCTAGTTGGC 59.381 50.000 0.19 0.00 0.00 4.52
310 313 9.502091 TCATACTAAAATAGTTGTATGCATCCC 57.498 33.333 0.19 0.00 40.90 3.85
405 408 8.482598 TGAGGATCAAGCTTGATGTGTGATGA 62.483 42.308 39.54 12.99 45.97 2.92
408 411 3.008266 TGAGGATCAAGCTTGATGTGTGA 59.992 43.478 39.54 18.94 45.97 3.58
440 443 5.014755 TGACAGGTGATACATAGGGGTTTTT 59.985 40.000 0.00 0.00 0.00 1.94
453 804 9.958180 TTCAATTTCTAGAATTGACAGGTGATA 57.042 29.630 20.51 8.69 43.81 2.15
472 823 4.755123 CACTGTTCGGGTCTAGTTCAATTT 59.245 41.667 0.00 0.00 0.00 1.82
482 833 2.930826 ACAAATCACTGTTCGGGTCT 57.069 45.000 0.00 0.00 0.00 3.85
484 835 3.764237 ACTACAAATCACTGTTCGGGT 57.236 42.857 0.00 0.00 0.00 5.28
541 1178 2.231215 AGAAGATGAAAGGCGGATCG 57.769 50.000 0.00 0.00 0.00 3.69
613 1251 5.721960 AGAGGGAGACAGTAACACACAATAT 59.278 40.000 0.00 0.00 0.00 1.28
622 1260 7.387643 ACTTCATTTTAGAGGGAGACAGTAAC 58.612 38.462 0.00 0.00 0.00 2.50
637 1275 5.192927 AGATCCAATGCCGACTTCATTTTA 58.807 37.500 0.00 0.00 32.30 1.52
680 1318 4.065321 AGATTGTTCTATCGCCAGAAGG 57.935 45.455 0.00 0.00 35.25 3.46
689 1327 9.334947 TCAATCCAATGAGAAGATTGTTCTATC 57.665 33.333 10.71 0.00 44.60 2.08
721 1359 9.045223 CATCTCGTCTAAAAATGGATTGATACA 57.955 33.333 0.00 0.00 0.00 2.29
729 1367 6.037786 ACTCACATCTCGTCTAAAAATGGA 57.962 37.500 0.00 0.00 0.00 3.41
731 1369 6.254589 GGAGACTCACATCTCGTCTAAAAATG 59.745 42.308 4.53 0.00 45.27 2.32
732 1370 6.334202 GGAGACTCACATCTCGTCTAAAAAT 58.666 40.000 4.53 0.00 45.27 1.82
737 1376 2.093606 ACGGAGACTCACATCTCGTCTA 60.094 50.000 4.53 0.00 45.27 2.59
742 1381 3.791973 AATCACGGAGACTCACATCTC 57.208 47.619 4.53 0.00 43.85 2.75
746 1385 6.338146 CCTTATAAAATCACGGAGACTCACA 58.662 40.000 4.53 0.00 0.00 3.58
767 1406 3.553096 CGCCTCTTCACTATTATCGCCTT 60.553 47.826 0.00 0.00 0.00 4.35
769 1408 2.288273 ACGCCTCTTCACTATTATCGCC 60.288 50.000 0.00 0.00 0.00 5.54
770 1409 3.014604 ACGCCTCTTCACTATTATCGC 57.985 47.619 0.00 0.00 0.00 4.58
771 1410 4.360563 ACAACGCCTCTTCACTATTATCG 58.639 43.478 0.00 0.00 0.00 2.92
772 1411 6.663944 AAACAACGCCTCTTCACTATTATC 57.336 37.500 0.00 0.00 0.00 1.75
880 1556 5.538053 TCTCAAACAGAGGCAGGATAGATAG 59.462 44.000 0.00 0.00 44.81 2.08
881 1557 5.458595 TCTCAAACAGAGGCAGGATAGATA 58.541 41.667 0.00 0.00 44.81 1.98
882 1558 4.293494 TCTCAAACAGAGGCAGGATAGAT 58.707 43.478 0.00 0.00 44.81 1.98
892 1568 2.208431 GATCGGCATCTCAAACAGAGG 58.792 52.381 0.00 0.00 44.81 3.69
908 1584 3.131223 ACTGACATGTAACCTCTGGATCG 59.869 47.826 0.00 0.00 0.00 3.69
915 1591 6.207213 CGATTAGGTACTGACATGTAACCTC 58.793 44.000 19.42 9.43 41.52 3.85
919 1595 4.498513 CGGCGATTAGGTACTGACATGTAA 60.499 45.833 0.00 0.00 41.52 2.41
920 1596 3.004002 CGGCGATTAGGTACTGACATGTA 59.996 47.826 0.00 0.00 41.52 2.29
1227 1922 3.637273 AGGAACTCCCGTGGCACC 61.637 66.667 12.86 0.00 40.87 5.01
1627 2322 2.673523 GCACACCATCTCCAGCCT 59.326 61.111 0.00 0.00 0.00 4.58
1628 2323 2.821366 CGCACACCATCTCCAGCC 60.821 66.667 0.00 0.00 0.00 4.85
1669 2364 2.575921 TCCTCCTCATCCTCACCAAT 57.424 50.000 0.00 0.00 0.00 3.16
1679 2374 0.622665 CTGGCCAACTTCCTCCTCAT 59.377 55.000 7.01 0.00 0.00 2.90
1680 2375 0.768221 ACTGGCCAACTTCCTCCTCA 60.768 55.000 7.01 0.00 0.00 3.86
2311 3006 2.581354 GTCCATGAGCGCTGTCCT 59.419 61.111 18.48 0.00 0.00 3.85
2349 3044 3.826637 GTCGGAAAGGATGACGGAA 57.173 52.632 0.00 0.00 0.00 4.30
2478 3173 1.288439 CTCGGCGATGAGGATGAGG 59.712 63.158 11.27 0.00 32.18 3.86
2698 3393 1.785041 CGCCAGTGGTGTGAACTTGG 61.785 60.000 14.95 0.00 0.00 3.61
2773 3468 2.829720 ACTGCATGAATCCACTGCAATT 59.170 40.909 0.00 0.00 44.59 2.32
2834 3529 6.701400 ACTGCACAATTGTCTTTAATTTCACC 59.299 34.615 8.48 0.00 0.00 4.02
2895 3596 5.682234 AAAGCCTTTTCAGGGGAAATATG 57.318 39.130 0.00 0.00 42.31 1.78
2898 3599 5.010708 TCTAAAGCCTTTTCAGGGGAAAT 57.989 39.130 0.00 0.00 42.31 2.17
2902 3603 4.242336 AGATCTAAAGCCTTTTCAGGGG 57.758 45.455 0.00 0.00 41.21 4.79
3007 3710 9.689976 AGATGAGTACATGAATAATCTTCTTCG 57.310 33.333 0.00 0.00 32.74 3.79
3025 3728 9.907229 CAGGTATATCCTACACATAGATGAGTA 57.093 37.037 0.00 0.00 46.24 2.59
3040 6488 4.509482 GTCTGGGTAGAGCAGGTATATCCT 60.509 50.000 5.18 0.00 39.49 3.24
3172 6621 8.510505 GGATATTTGTTGATTTGAGCTAGATCC 58.489 37.037 5.36 0.00 0.00 3.36
3236 6685 5.662211 TGTGTCTGCAAATATGATGATCG 57.338 39.130 0.00 0.00 0.00 3.69
3246 6695 8.025445 GTGAATAATCTTCTTGTGTCTGCAAAT 58.975 33.333 0.00 0.00 0.00 2.32
3255 6704 9.430838 GATGAATTCGTGAATAATCTTCTTGTG 57.569 33.333 4.51 0.00 0.00 3.33
3276 6725 8.874156 AGCAGGTATATCTGACATAAAGATGAA 58.126 33.333 17.47 0.00 35.92 2.57
3285 6734 3.260380 GCCAGAGCAGGTATATCTGACAT 59.740 47.826 17.47 1.39 42.48 3.06
3289 6738 2.255406 AGGCCAGAGCAGGTATATCTG 58.745 52.381 8.76 8.76 42.56 2.90
3312 6761 2.688507 CACTTGTCCACTCGTGCTTAT 58.311 47.619 0.00 0.00 0.00 1.73
3365 6814 6.634805 ACATATACGTCATCTCCATTGATCC 58.365 40.000 0.00 0.00 0.00 3.36
3380 6829 9.595823 AACAAAGTAGAGCATAAACATATACGT 57.404 29.630 0.00 0.00 0.00 3.57
3460 6909 8.902540 ATGTTTTCTTTATTCTTTTTGGGGAC 57.097 30.769 0.00 0.00 0.00 4.46
3475 6924 8.534496 CCCCAAAGATCTTGATATGTTTTCTTT 58.466 33.333 9.17 0.00 33.50 2.52
3476 6925 7.675619 ACCCCAAAGATCTTGATATGTTTTCTT 59.324 33.333 9.17 0.00 0.00 2.52
3477 6926 7.184862 ACCCCAAAGATCTTGATATGTTTTCT 58.815 34.615 9.17 0.00 0.00 2.52
3478 6927 7.410120 ACCCCAAAGATCTTGATATGTTTTC 57.590 36.000 9.17 0.00 0.00 2.29
3498 6957 6.584185 TTTGCAAAGAAGATAACTAACCCC 57.416 37.500 8.05 0.00 0.00 4.95
3592 7052 2.017049 GTTCCCACTATGCACATGTCC 58.983 52.381 0.00 0.00 0.00 4.02
3641 7101 1.137675 TCTCTGATTGTGCCATCTCCG 59.862 52.381 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.