AutoCloner

Multiple sequence alignment - TraesCS7D01G228300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G228300	chr7D	100.000	2414	0	0	1	2414	188532559	188534972	0.000000e+00	4458
1	TraesCS7D01G228300	chr3D	93.968	2354	121	16	1	2343	541034902	541032559	0.000000e+00	3541
2	TraesCS7D01G228300	chr3D	93.219	2330	118	18	22	2336	415199840	415197536	0.000000e+00	3391
3	TraesCS7D01G228300	chr3D	92.888	2348	130	19	1	2337	397849383	397851704	0.000000e+00	3376
4	TraesCS7D01G228300	chr3D	94.232	2011	105	9	1	2007	146699541	146701544	0.000000e+00	3061
5	TraesCS7D01G228300	chr3D	92.208	77	6	0	2338	2414	97567132	97567056	2.540000e-20	110
6	TraesCS7D01G228300	chr2D	94.032	2346	122	14	1	2336	167550649	167548312	0.000000e+00	3541
7	TraesCS7D01G228300	chr2D	93.800	2355	107	19	1	2346	260388082	260385758	0.000000e+00	3504
8	TraesCS7D01G228300	chr2D	91.770	486	24	3	1867	2336	423359894	423359409	0.000000e+00	662
9	TraesCS7D01G228300	chr2D	93.590	78	5	0	2337	2414	524945597	524945674	1.520000e-22	117
10	TraesCS7D01G228300	chr4D	93.836	2320	118	15	29	2336	476807252	476809558	0.000000e+00	3469
11	TraesCS7D01G228300	chr1D	93.481	2347	131	13	1	2332	349280153	349277814	0.000000e+00	3467
12	TraesCS7D01G228300	chr5D	93.243	2353	117	18	1	2343	249656390	249654070	0.000000e+00	3426
13	TraesCS7D01G228300	chr5D	90.588	85	8	0	2330	2414	548858979	548859063	1.960000e-21	113
14	TraesCS7D01G228300	chr2B	91.068	1713	118	14	632	2332	650548386	650546697	0.000000e+00	2283
15	TraesCS7D01G228300	chr2B	88.640	669	60	7	1676	2332	624598908	624598244	0.000000e+00	800
16	TraesCS7D01G228300	chr2B	93.590	78	5	0	2337	2414	767463652	767463575	1.520000e-22	117
17	TraesCS7D01G228300	chr5A	90.814	1720	124	19	632	2345	593807636	593809327	0.000000e+00	2270
18	TraesCS7D01G228300	chr5A	92.105	76	6	0	2339	2414	11884138	11884213	9.130000e-20	108
19	TraesCS7D01G228300	chr2A	88.196	1508	130	23	859	2343	168989331	168987849	0.000000e+00	1755
20	TraesCS7D01G228300	chr7A	90.220	501	42	7	1841	2340	49468531	49469025	0.000000e+00	647
21	TraesCS7D01G228300	chr5B	94.737	76	4	0	2337	2412	677646681	677646606	4.220000e-23	119
22	TraesCS7D01G228300	chr5B	91.026	78	7	0	2337	2414	12657034	12656957	3.280000e-19	106
23	TraesCS7D01G228300	chrUn	93.590	78	5	0	2337	2414	295822120	295822043	1.520000e-22	117
24	TraesCS7D01G228300	chr4A	93.590	78	5	0	2337	2414	723608528	723608451	1.520000e-22	117

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G228300	chr7D	188532559	188534972	2413	False	4458	4458	100.000	1	2414	1	chr7D.!!$F1	2413
1	TraesCS7D01G228300	chr3D	541032559	541034902	2343	True	3541	3541	93.968	1	2343	1	chr3D.!!$R3	2342
2	TraesCS7D01G228300	chr3D	415197536	415199840	2304	True	3391	3391	93.219	22	2336	1	chr3D.!!$R2	2314
3	TraesCS7D01G228300	chr3D	397849383	397851704	2321	False	3376	3376	92.888	1	2337	1	chr3D.!!$F2	2336
4	TraesCS7D01G228300	chr3D	146699541	146701544	2003	False	3061	3061	94.232	1	2007	1	chr3D.!!$F1	2006
5	TraesCS7D01G228300	chr2D	167548312	167550649	2337	True	3541	3541	94.032	1	2336	1	chr2D.!!$R1	2335
6	TraesCS7D01G228300	chr2D	260385758	260388082	2324	True	3504	3504	93.800	1	2346	1	chr2D.!!$R2	2345
7	TraesCS7D01G228300	chr4D	476807252	476809558	2306	False	3469	3469	93.836	29	2336	1	chr4D.!!$F1	2307
8	TraesCS7D01G228300	chr1D	349277814	349280153	2339	True	3467	3467	93.481	1	2332	1	chr1D.!!$R1	2331
9	TraesCS7D01G228300	chr5D	249654070	249656390	2320	True	3426	3426	93.243	1	2343	1	chr5D.!!$R1	2342
10	TraesCS7D01G228300	chr2B	650546697	650548386	1689	True	2283	2283	91.068	632	2332	1	chr2B.!!$R2	1700
11	TraesCS7D01G228300	chr2B	624598244	624598908	664	True	800	800	88.640	1676	2332	1	chr2B.!!$R1	656
12	TraesCS7D01G228300	chr5A	593807636	593809327	1691	False	2270	2270	90.814	632	2345	1	chr5A.!!$F2	1713
13	TraesCS7D01G228300	chr2A	168987849	168989331	1482	True	1755	1755	88.196	859	2343	1	chr2A.!!$R1	1484

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
233	240	0.107312	TTCGAAACCCCGTTGACCAA	60.107	50.0	0.0	0.0	0.0	3.67	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2016	2169	0.750546	ATGCATTGACCGAGCATGCT	60.751	50.0	22.92	22.92	46.34	3.79	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
133	138	9.856162	AGACCAAGTTTAGTATTTTTCCTTGTA	57.144	29.630	0.00	0.00	0.00	2.41
233	240	0.107312	TTCGAAACCCCGTTGACCAA	60.107	50.000	0.00	0.00	0.00	3.67
281	289	2.857744	CGCCTAACCCTAGCTCCCG	61.858	68.421	0.00	0.00	0.00	5.14
478	487	2.203640	TCGCCCACCACTGACTCT	60.204	61.111	0.00	0.00	0.00	3.24
511	524	1.650528	TGTTATTGGGCCCAAAAGGG	58.349	50.000	40.00	0.00	39.55	3.95
805	823	0.179078	TTTCCCACGCGTGTACACTT	60.179	50.000	34.81	5.20	0.00	3.16
887	905	3.680937	GCCAAATAACACGTAGCACTACA	59.319	43.478	8.45	0.00	35.87	2.74
905	923	6.318900	GCACTACAGCTATTTAAACCATCCTT	59.681	38.462	0.00	0.00	0.00	3.36
965	983	2.444421	CATCTGCCCTTCTTGCTCTTT	58.556	47.619	0.00	0.00	0.00	2.52
1087	1105	2.930040	GTGTACATTGAGCGCACACTAT	59.070	45.455	11.47	0.00	37.20	2.12
1195	1213	1.001974	CTCCAAGGATGTTCCGTGTCA	59.998	52.381	8.35	0.00	43.22	3.58
1624	1670	9.220767	GTTCTTCCTAGTTTCAACTATGTGATT	57.779	33.333	0.00	0.00	40.46	2.57
1773	1826	1.480954	GTAGCCACCTAGCTAGTGCAA	59.519	52.381	19.31	3.99	45.74	4.08
1864	1943	5.320549	AGGCTGCAACTGATCATAAAAAG	57.679	39.130	0.50	0.00	0.00	2.27
1976	2057	2.512515	GGCTCGGTCAGTGCATCC	60.513	66.667	0.00	0.00	40.84	3.51
2017	2170	4.880537	AGGCTCGATCGGCGCAAG	62.881	66.667	24.36	12.93	40.61	4.01
2032	2185	3.616935	CAAGCATGCTCGGTCAATG	57.383	52.632	22.93	9.94	0.00	2.82
2033	2186	0.524816	CAAGCATGCTCGGTCAATGC	60.525	55.000	22.93	0.00	38.43	3.56
2034	2187	0.961857	AAGCATGCTCGGTCAATGCA	60.962	50.000	22.93	0.00	40.41	3.96
2061	2263	2.598394	GCAGGCAGGCTTGTTGGA	60.598	61.111	5.27	0.00	0.00	3.53
2152	2355	2.592287	GGCCCAACGGTCGAACAA	60.592	61.111	0.00	0.00	0.00	2.83
2259	2464	4.649705	TCGGGCAAGGGAGTGGGA	62.650	66.667	0.00	0.00	0.00	4.37
2285	2490	5.993106	ACTGAGCAAAAGTTAAGAGTGTC	57.007	39.130	0.00	0.00	0.00	3.67
2296	2501	2.698855	AAGAGTGTCGGGATGAATGG	57.301	50.000	0.00	0.00	0.00	3.16
2340	2545	6.719370	GGGCACAGATGTAAAAATCCCATATA	59.281	38.462	0.00	0.00	0.00	0.86
2366	2571	8.669946	TTAATATCACGAAGATACCAATTGCA	57.330	30.769	0.00	0.00	41.81	4.08
2367	2572	4.882671	ATCACGAAGATACCAATTGCAC	57.117	40.909	0.00	0.00	34.43	4.57
2368	2573	3.006940	TCACGAAGATACCAATTGCACC	58.993	45.455	0.00	0.00	0.00	5.01
2369	2574	2.097466	CACGAAGATACCAATTGCACCC	59.903	50.000	0.00	0.00	0.00	4.61
2370	2575	1.330521	CGAAGATACCAATTGCACCCG	59.669	52.381	0.00	0.00	0.00	5.28
2371	2576	1.676006	GAAGATACCAATTGCACCCGG	59.324	52.381	0.00	0.00	0.00	5.73
2372	2577	0.751643	AGATACCAATTGCACCCGGC	60.752	55.000	0.00	0.00	45.13	6.13
2373	2578	1.734388	GATACCAATTGCACCCGGCC	61.734	60.000	0.00	0.00	43.89	6.13
2374	2579	2.223464	ATACCAATTGCACCCGGCCT	62.223	55.000	0.00	0.00	43.89	5.19
2375	2580	2.830186	TACCAATTGCACCCGGCCTC	62.830	60.000	0.00	0.00	43.89	4.70
2376	2581	2.361610	CAATTGCACCCGGCCTCT	60.362	61.111	0.00	0.00	43.89	3.69
2377	2582	2.361610	AATTGCACCCGGCCTCTG	60.362	61.111	0.00	0.00	43.89	3.35
2378	2583	3.210012	AATTGCACCCGGCCTCTGT	62.210	57.895	0.00	0.00	43.89	3.41
2379	2584	1.847798	AATTGCACCCGGCCTCTGTA	61.848	55.000	0.00	0.00	43.89	2.74
2380	2585	2.536997	ATTGCACCCGGCCTCTGTAC	62.537	60.000	0.00	0.00	43.89	2.90
2381	2586	4.468689	GCACCCGGCCTCTGTACC	62.469	72.222	0.00	0.00	36.11	3.34
2382	2587	3.000819	CACCCGGCCTCTGTACCA	61.001	66.667	0.00	0.00	0.00	3.25
2383	2588	2.203877	ACCCGGCCTCTGTACCAA	60.204	61.111	0.00	0.00	0.00	3.67
2384	2589	2.267961	CCCGGCCTCTGTACCAAC	59.732	66.667	0.00	0.00	0.00	3.77
2385	2590	2.589157	CCCGGCCTCTGTACCAACA	61.589	63.158	0.00	0.00	0.00	3.33
2386	2591	1.373435	CCGGCCTCTGTACCAACAA	59.627	57.895	0.00	0.00	34.49	2.83
2387	2592	0.673644	CCGGCCTCTGTACCAACAAG	60.674	60.000	0.00	0.00	34.49	3.16
2388	2593	0.320374	CGGCCTCTGTACCAACAAGA	59.680	55.000	0.00	0.00	34.49	3.02
2389	2594	1.066143	CGGCCTCTGTACCAACAAGAT	60.066	52.381	0.00	0.00	34.49	2.40
2390	2595	2.359900	GGCCTCTGTACCAACAAGATG	58.640	52.381	0.00	0.00	34.49	2.90
2391	2596	2.290323	GGCCTCTGTACCAACAAGATGT	60.290	50.000	0.00	0.00	34.49	3.06
2392	2597	3.003480	GCCTCTGTACCAACAAGATGTC	58.997	50.000	0.00	0.00	34.49	3.06
2393	2598	3.600388	CCTCTGTACCAACAAGATGTCC	58.400	50.000	0.00	0.00	34.49	4.02
2394	2599	3.007940	CCTCTGTACCAACAAGATGTCCA	59.992	47.826	0.00	0.00	34.49	4.02
2395	2600	4.504864	CCTCTGTACCAACAAGATGTCCAA	60.505	45.833	0.00	0.00	34.49	3.53
2396	2601	5.042463	TCTGTACCAACAAGATGTCCAAA	57.958	39.130	0.00	0.00	34.49	3.28
2397	2602	5.630121	TCTGTACCAACAAGATGTCCAAAT	58.370	37.500	0.00	0.00	34.49	2.32
2398	2603	6.774673	TCTGTACCAACAAGATGTCCAAATA	58.225	36.000	0.00	0.00	34.49	1.40
2399	2604	6.653320	TCTGTACCAACAAGATGTCCAAATAC	59.347	38.462	0.00	0.00	34.49	1.89
2400	2605	6.299922	TGTACCAACAAGATGTCCAAATACA	58.700	36.000	0.00	0.00	30.91	2.29
2401	2606	6.945435	TGTACCAACAAGATGTCCAAATACAT	59.055	34.615	0.00	0.00	36.31	2.29
2402	2607	6.916360	ACCAACAAGATGTCCAAATACATT	57.084	33.333	0.00	0.00	40.17	2.71
2403	2608	8.952278	GTACCAACAAGATGTCCAAATACATTA	58.048	33.333	0.00	0.00	40.17	1.90
2404	2609	8.415950	ACCAACAAGATGTCCAAATACATTAA	57.584	30.769	0.00	0.00	40.17	1.40
2405	2610	8.522830	ACCAACAAGATGTCCAAATACATTAAG	58.477	33.333	0.00	0.00	40.17	1.85
2406	2611	7.975616	CCAACAAGATGTCCAAATACATTAAGG	59.024	37.037	0.00	0.00	40.17	2.69
2407	2612	8.739039	CAACAAGATGTCCAAATACATTAAGGA	58.261	33.333	0.00	0.00	40.17	3.36
2408	2613	9.479549	AACAAGATGTCCAAATACATTAAGGAT	57.520	29.630	0.00	0.00	40.17	3.24
2412	2617	9.561069	AGATGTCCAAATACATTAAGGATACAC	57.439	33.333	0.00	0.00	40.17	2.90
2413	2618	9.337396	GATGTCCAAATACATTAAGGATACACA	57.663	33.333	0.00	0.00	40.17	3.72

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
142	147	1.910819	TCGCCGTTCGTCGTTTTATAC	59.089	47.619	0.00	0.00	39.67	1.47
233	240	2.109480	GGGGTTTAGAGGGGTTTTGAGT	59.891	50.000	0.00	0.00	0.00	3.41
887	905	5.272402	AGGCAAAGGATGGTTTAAATAGCT	58.728	37.500	0.00	0.00	0.00	3.32
897	915	1.000396	GGCAGAGGCAAAGGATGGT	60.000	57.895	0.00	0.00	43.71	3.55
901	919	1.304282	GGATGGCAGAGGCAAAGGA	59.696	57.895	0.00	0.00	42.43	3.36
905	923	1.284111	ATGAGGGATGGCAGAGGCAA	61.284	55.000	0.00	0.00	42.43	4.52
965	983	3.511934	GCTAGAAGAAGGAGAAGTGGTCA	59.488	47.826	0.00	0.00	0.00	4.02
1087	1105	2.224992	ACCTTGATATTGCCCACACACA	60.225	45.455	0.00	0.00	0.00	3.72
1195	1213	2.292455	CCCCATTTTGGATGACCTCCTT	60.292	50.000	0.00	0.00	45.21	3.36
1671	1717	5.539048	ACTAACAAAGCGAGCTCTCTAAAA	58.461	37.500	12.85	0.00	0.00	1.52
1672	1718	5.135508	ACTAACAAAGCGAGCTCTCTAAA	57.864	39.130	12.85	0.00	0.00	1.85
1864	1943	5.423015	TGTCTCCTTGATTTAGAGCATCAC	58.577	41.667	0.00	0.00	37.82	3.06
1879	1960	1.373497	CTCGCACGCTTGTCTCCTT	60.373	57.895	0.00	0.00	0.00	3.36
2016	2169	0.750546	ATGCATTGACCGAGCATGCT	60.751	50.000	22.92	22.92	46.34	3.79
2017	2170	1.731700	ATGCATTGACCGAGCATGC	59.268	52.632	10.51	10.51	46.34	4.06
2020	2173	1.083806	GTCGATGCATTGACCGAGCA	61.084	55.000	29.75	0.66	43.14	4.26
2021	2174	1.638467	GTCGATGCATTGACCGAGC	59.362	57.895	29.75	10.23	35.58	5.03
2022	2175	1.920051	CGTCGATGCATTGACCGAG	59.080	57.895	32.21	19.56	37.82	4.63
2023	2176	2.164663	GCGTCGATGCATTGACCGA	61.165	57.895	32.21	19.95	37.82	4.69
2024	2177	2.321060	GCGTCGATGCATTGACCG	59.679	61.111	32.21	27.38	37.82	4.79
2025	2178	3.485110	TGCGTCGATGCATTGACC	58.515	55.556	32.21	25.81	40.62	4.02
2033	2186	3.164390	CTGCCTGCATGCGTCGATG	62.164	63.158	14.09	0.00	0.00	3.84
2034	2187	2.893895	CTGCCTGCATGCGTCGAT	60.894	61.111	14.09	0.00	0.00	3.59
2152	2355	4.011517	CCGCGTTGGGGGTGTAGT	62.012	66.667	4.92	0.00	41.19	2.73
2259	2464	7.602753	ACACTCTTAACTTTTGCTCAGTTTTT	58.397	30.769	1.81	0.00	35.95	1.94
2285	2490	1.051812	AGCTCTACCCATTCATCCCG	58.948	55.000	0.00	0.00	0.00	5.14
2296	2501	1.763545	CCCTGGTTCCTTAGCTCTACC	59.236	57.143	0.00	0.00	0.00	3.18
2340	2545	9.283768	TGCAATTGGTATCTTCGTGATATTAAT	57.716	29.630	7.72	0.00	39.56	1.40
2345	2550	4.814234	GGTGCAATTGGTATCTTCGTGATA	59.186	41.667	7.72	0.00	36.65	2.15
2346	2551	3.627577	GGTGCAATTGGTATCTTCGTGAT	59.372	43.478	7.72	0.21	39.11	3.06
2347	2552	3.006940	GGTGCAATTGGTATCTTCGTGA	58.993	45.455	7.72	0.00	0.00	4.35
2348	2553	2.097466	GGGTGCAATTGGTATCTTCGTG	59.903	50.000	7.72	0.00	0.00	4.35
2349	2554	2.365582	GGGTGCAATTGGTATCTTCGT	58.634	47.619	7.72	0.00	0.00	3.85
2350	2555	1.330521	CGGGTGCAATTGGTATCTTCG	59.669	52.381	7.72	0.00	0.00	3.79
2351	2556	1.676006	CCGGGTGCAATTGGTATCTTC	59.324	52.381	7.72	0.00	0.00	2.87
2352	2557	1.762708	CCGGGTGCAATTGGTATCTT	58.237	50.000	7.72	0.00	0.00	2.40
2353	2558	0.751643	GCCGGGTGCAATTGGTATCT	60.752	55.000	7.72	0.00	40.77	1.98
2354	2559	1.733526	GCCGGGTGCAATTGGTATC	59.266	57.895	7.72	0.00	40.77	2.24
2355	2560	1.756561	GGCCGGGTGCAATTGGTAT	60.757	57.895	7.72	0.00	43.89	2.73
2356	2561	2.361865	GGCCGGGTGCAATTGGTA	60.362	61.111	7.72	0.00	43.89	3.25
2357	2562	4.299796	AGGCCGGGTGCAATTGGT	62.300	61.111	7.72	0.00	43.89	3.67
2358	2563	3.451894	GAGGCCGGGTGCAATTGG	61.452	66.667	7.72	0.00	43.89	3.16
2359	2564	2.361610	AGAGGCCGGGTGCAATTG	60.362	61.111	2.18	0.00	43.89	2.32
2360	2565	1.847798	TACAGAGGCCGGGTGCAATT	61.848	55.000	2.18	0.00	43.89	2.32
2361	2566	2.297895	TACAGAGGCCGGGTGCAAT	61.298	57.895	2.18	0.00	43.89	3.56
2362	2567	2.925706	TACAGAGGCCGGGTGCAA	60.926	61.111	2.18	0.00	43.89	4.08
2363	2568	3.702048	GTACAGAGGCCGGGTGCA	61.702	66.667	2.18	0.00	43.89	4.57
2364	2569	4.468689	GGTACAGAGGCCGGGTGC	62.469	72.222	2.18	0.02	40.16	5.01
2365	2570	2.589157	TTGGTACAGAGGCCGGGTG	61.589	63.158	2.18	0.00	42.39	4.61
2366	2571	2.203877	TTGGTACAGAGGCCGGGT	60.204	61.111	2.18	0.00	42.39	5.28
2367	2572	2.119484	TTGTTGGTACAGAGGCCGGG	62.119	60.000	2.18	0.00	42.39	5.73
2368	2573	0.673644	CTTGTTGGTACAGAGGCCGG	60.674	60.000	0.00	0.00	42.39	6.13
2369	2574	0.320374	TCTTGTTGGTACAGAGGCCG	59.680	55.000	0.00	0.00	42.39	6.13
2370	2575	2.290323	ACATCTTGTTGGTACAGAGGCC	60.290	50.000	0.00	0.00	42.39	5.19
2371	2576	3.003480	GACATCTTGTTGGTACAGAGGC	58.997	50.000	0.00	0.00	42.39	4.70
2372	2577	3.007940	TGGACATCTTGTTGGTACAGAGG	59.992	47.826	0.00	0.00	42.39	3.69
2373	2578	4.271696	TGGACATCTTGTTGGTACAGAG	57.728	45.455	0.00	0.00	42.39	3.35
2374	2579	4.698201	TTGGACATCTTGTTGGTACAGA	57.302	40.909	0.00	0.00	42.39	3.41
2375	2580	5.964958	ATTTGGACATCTTGTTGGTACAG	57.035	39.130	0.00	0.00	42.39	2.74
2376	2581	6.299922	TGTATTTGGACATCTTGTTGGTACA	58.700	36.000	0.00	0.00	0.00	2.90
2377	2582	6.811253	TGTATTTGGACATCTTGTTGGTAC	57.189	37.500	0.00	0.00	0.00	3.34
2378	2583	9.521841	TTAATGTATTTGGACATCTTGTTGGTA	57.478	29.630	0.00	0.00	39.16	3.25
2379	2584	6.916360	AATGTATTTGGACATCTTGTTGGT	57.084	33.333	0.00	0.00	39.16	3.67
2380	2585	7.975616	CCTTAATGTATTTGGACATCTTGTTGG	59.024	37.037	0.00	0.00	39.16	3.77
2381	2586	8.739039	TCCTTAATGTATTTGGACATCTTGTTG	58.261	33.333	0.00	0.00	39.16	3.33
2382	2587	8.877864	TCCTTAATGTATTTGGACATCTTGTT	57.122	30.769	0.00	0.00	39.16	2.83
2386	2591	9.561069	GTGTATCCTTAATGTATTTGGACATCT	57.439	33.333	0.00	0.00	39.16	2.90
2387	2592	9.337396	TGTGTATCCTTAATGTATTTGGACATC	57.663	33.333	0.00	0.00	39.16	3.06

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.