Multiple sequence alignment - TraesCS7D01G227900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G227900 chr7D 100.000 5199 0 0 1 5199 188288075 188293273 0.000000e+00 9601.0
1 TraesCS7D01G227900 chr7D 97.388 268 7 0 1 268 188280253 188280520 1.710000e-124 457.0
2 TraesCS7D01G227900 chr7A 95.205 3045 130 11 314 3343 195832422 195829379 0.000000e+00 4800.0
3 TraesCS7D01G227900 chr7A 95.607 956 42 0 3330 4285 195829365 195828410 0.000000e+00 1533.0
4 TraesCS7D01G227900 chr7A 93.333 540 24 4 4272 4801 195828381 195827844 0.000000e+00 787.0
5 TraesCS7D01G227900 chr7A 92.045 264 7 4 4940 5199 195827790 195827537 4.950000e-95 359.0
6 TraesCS7D01G227900 chr7A 90.909 44 4 0 270 313 287243514 287243471 5.620000e-05 60.2
7 TraesCS7D01G227900 chr7B 93.503 1570 82 6 315 1872 332128196 332129757 0.000000e+00 2316.0
8 TraesCS7D01G227900 chr7B 93.657 741 36 6 1965 2701 332129908 332130641 0.000000e+00 1098.0
9 TraesCS7D01G227900 chr5A 77.175 2138 424 49 2042 4149 687280350 687278247 0.000000e+00 1186.0
10 TraesCS7D01G227900 chr6A 77.695 1076 197 33 2124 3173 7006315 7005257 7.400000e-173 617.0
11 TraesCS7D01G227900 chr6A 75.893 784 161 22 1023 1790 7009386 7008615 4.920000e-100 375.0
12 TraesCS7D01G227900 chr6A 76.217 719 135 26 1023 1729 6976839 6976145 1.070000e-91 348.0
13 TraesCS7D01G227900 chr6D 77.732 961 178 21 2239 3173 7283414 7282464 1.640000e-154 556.0
14 TraesCS7D01G227900 chr6D 97.778 270 6 0 1 270 225963347 225963616 2.840000e-127 466.0
15 TraesCS7D01G227900 chr6D 75.895 950 206 17 2245 3176 464798351 464797407 1.020000e-126 464.0
16 TraesCS7D01G227900 chr6D 96.654 269 9 0 1 269 225971396 225971664 1.030000e-121 448.0
17 TraesCS7D01G227900 chr6D 96.283 269 9 1 1 269 227422151 227421884 1.720000e-119 440.0
18 TraesCS7D01G227900 chr6D 76.590 786 154 26 1023 1790 7292473 7291700 6.270000e-109 405.0
19 TraesCS7D01G227900 chr6D 80.692 347 66 1 2241 2586 7290477 7290131 8.580000e-68 268.0
20 TraesCS7D01G227900 chr6D 72.693 531 131 14 1079 1602 464792087 464791564 1.160000e-36 165.0
21 TraesCS7D01G227900 chr6D 95.238 42 2 0 272 313 45490253 45490294 3.360000e-07 67.6
22 TraesCS7D01G227900 chr1D 97.407 270 7 0 1 270 199628915 199628646 1.320000e-125 460.0
23 TraesCS7D01G227900 chr1D 96.296 270 8 2 1 270 199634187 199633920 4.780000e-120 442.0
24 TraesCS7D01G227900 chr2A 75.915 847 186 15 1000 1834 765175581 765174741 8.050000e-113 418.0
25 TraesCS7D01G227900 chr5B 93.309 269 18 0 1 269 220183005 220182737 1.050000e-106 398.0
26 TraesCS7D01G227900 chr5B 79.279 222 41 4 1509 1729 432980122 432979905 3.240000e-32 150.0
27 TraesCS7D01G227900 chr5B 100.000 39 0 0 271 309 548985320 548985282 7.220000e-09 73.1
28 TraesCS7D01G227900 chr2B 76.486 774 157 19 1000 1758 798826379 798825616 1.050000e-106 398.0
29 TraesCS7D01G227900 chr2B 93.585 265 16 1 5 269 161820908 161821171 1.360000e-105 394.0
30 TraesCS7D01G227900 chr2B 97.561 41 1 0 267 307 55224008 55224048 2.600000e-08 71.3
31 TraesCS7D01G227900 chr3B 92.937 269 19 0 1 269 373513898 373514166 4.880000e-105 392.0
32 TraesCS7D01G227900 chr2D 76.160 776 157 22 1000 1758 639691232 639690468 2.940000e-102 383.0
33 TraesCS7D01G227900 chr2D 100.000 44 0 0 270 313 602647865 602647908 1.200000e-11 82.4
34 TraesCS7D01G227900 chr6B 71.548 717 183 20 1010 1717 708730902 708730198 1.920000e-39 174.0
35 TraesCS7D01G227900 chr6B 72.667 600 133 23 1014 1602 708723886 708723307 2.490000e-38 171.0
36 TraesCS7D01G227900 chr4A 79.545 132 26 1 2480 2611 647381192 647381062 5.540000e-15 93.5
37 TraesCS7D01G227900 chr1A 97.727 44 1 0 270 313 557512199 557512242 5.580000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G227900 chr7D 188288075 188293273 5198 False 9601.00 9601 100.0000 1 5199 1 chr7D.!!$F2 5198
1 TraesCS7D01G227900 chr7A 195827537 195832422 4885 True 1869.75 4800 94.0475 314 5199 4 chr7A.!!$R2 4885
2 TraesCS7D01G227900 chr7B 332128196 332130641 2445 False 1707.00 2316 93.5800 315 2701 2 chr7B.!!$F1 2386
3 TraesCS7D01G227900 chr5A 687278247 687280350 2103 True 1186.00 1186 77.1750 2042 4149 1 chr5A.!!$R1 2107
4 TraesCS7D01G227900 chr6A 7005257 7009386 4129 True 496.00 617 76.7940 1023 3173 2 chr6A.!!$R2 2150
5 TraesCS7D01G227900 chr6A 6976145 6976839 694 True 348.00 348 76.2170 1023 1729 1 chr6A.!!$R1 706
6 TraesCS7D01G227900 chr6D 7282464 7283414 950 True 556.00 556 77.7320 2239 3173 1 chr6D.!!$R1 934
7 TraesCS7D01G227900 chr6D 464797407 464798351 944 True 464.00 464 75.8950 2245 3176 1 chr6D.!!$R4 931
8 TraesCS7D01G227900 chr6D 7290131 7292473 2342 True 336.50 405 78.6410 1023 2586 2 chr6D.!!$R5 1563
9 TraesCS7D01G227900 chr2A 765174741 765175581 840 True 418.00 418 75.9150 1000 1834 1 chr2A.!!$R1 834
10 TraesCS7D01G227900 chr2B 798825616 798826379 763 True 398.00 398 76.4860 1000 1758 1 chr2B.!!$R1 758
11 TraesCS7D01G227900 chr2D 639690468 639691232 764 True 383.00 383 76.1600 1000 1758 1 chr2D.!!$R1 758

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
266 267 0.034337 GCCTAATTATCCGGGCGTCA 59.966 55.000 0.00 0.0 35.08 4.35 F
462 475 0.039798 TGTACGTGGACTTGACTCGC 60.040 55.000 0.00 0.0 0.00 5.03 F
514 527 0.887933 TCATCGCACACTACTCTGCA 59.112 50.000 0.00 0.0 32.57 4.41 F
1352 1380 1.227350 CTCGCCATCGGATTGCTCA 60.227 57.895 11.67 0.0 36.13 4.26 F
2793 4939 1.477553 TGGATGGCAGAAGGATTTGC 58.522 50.000 0.00 0.0 39.56 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1569 1606 1.965414 TGCCTAGACCTCCAAATCCA 58.035 50.000 0.00 0.0 0.00 3.41 R
2206 4294 4.243007 AGCCAACTGAAATTTACAGTGC 57.757 40.909 18.05 17.2 46.01 4.40 R
2793 4939 1.470098 CTTGTCCATTCTCTTTGCCGG 59.530 52.381 0.00 0.0 0.00 6.13 R
3525 5701 0.041135 GCGTCTCTCCGTATCTTCCG 60.041 60.000 0.00 0.0 0.00 4.30 R
4934 7162 0.107643 TGGAACAACAGATGACGGCA 59.892 50.000 0.00 0.0 31.92 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.660180 TTGTTTTTAGCCACAATTTTCTTTACT 57.340 25.926 0.00 0.00 0.00 2.24
35 36 9.660180 TGTTTTTAGCCACAATTTTCTTTACTT 57.340 25.926 0.00 0.00 0.00 2.24
40 41 9.959749 TTAGCCACAATTTTCTTTACTTTAGTG 57.040 29.630 0.00 0.00 0.00 2.74
41 42 6.923508 AGCCACAATTTTCTTTACTTTAGTGC 59.076 34.615 0.00 0.00 0.00 4.40
42 43 6.699642 GCCACAATTTTCTTTACTTTAGTGCA 59.300 34.615 0.00 0.00 0.00 4.57
43 44 7.384932 GCCACAATTTTCTTTACTTTAGTGCAT 59.615 33.333 0.00 0.00 0.00 3.96
44 45 8.915654 CCACAATTTTCTTTACTTTAGTGCATC 58.084 33.333 0.00 0.00 0.00 3.91
45 46 9.683069 CACAATTTTCTTTACTTTAGTGCATCT 57.317 29.630 0.00 0.00 0.00 2.90
72 73 9.668497 AAATACTTTATAAAGGTGTGGTCTCTC 57.332 33.333 25.25 0.00 40.31 3.20
73 74 6.936968 ACTTTATAAAGGTGTGGTCTCTCT 57.063 37.500 25.25 1.07 40.31 3.10
74 75 9.710818 ATACTTTATAAAGGTGTGGTCTCTCTA 57.289 33.333 25.25 7.69 40.31 2.43
75 76 7.838884 ACTTTATAAAGGTGTGGTCTCTCTAC 58.161 38.462 25.25 0.00 40.31 2.59
76 77 6.786967 TTATAAAGGTGTGGTCTCTCTACC 57.213 41.667 0.00 0.00 40.19 3.18
77 78 7.093465 CTTTATAAAGGTGTGGTCTCTCTACCA 60.093 40.741 16.19 0.00 38.49 3.25
100 101 6.906659 CAGCATGGTCTATGGATTATTTGAC 58.093 40.000 0.00 0.00 37.26 3.18
101 102 6.487668 CAGCATGGTCTATGGATTATTTGACA 59.512 38.462 0.00 0.00 37.26 3.58
102 103 6.488006 AGCATGGTCTATGGATTATTTGACAC 59.512 38.462 0.00 0.00 37.26 3.67
103 104 6.566564 GCATGGTCTATGGATTATTTGACACG 60.567 42.308 0.00 0.00 37.26 4.49
104 105 5.984725 TGGTCTATGGATTATTTGACACGT 58.015 37.500 0.00 0.00 0.00 4.49
105 106 6.411376 TGGTCTATGGATTATTTGACACGTT 58.589 36.000 0.00 0.00 0.00 3.99
106 107 7.557724 TGGTCTATGGATTATTTGACACGTTA 58.442 34.615 0.00 0.00 0.00 3.18
107 108 7.709182 TGGTCTATGGATTATTTGACACGTTAG 59.291 37.037 0.00 0.00 0.00 2.34
108 109 7.924412 GGTCTATGGATTATTTGACACGTTAGA 59.076 37.037 0.00 0.00 0.00 2.10
109 110 9.309516 GTCTATGGATTATTTGACACGTTAGAA 57.690 33.333 0.00 0.00 0.00 2.10
110 111 9.878667 TCTATGGATTATTTGACACGTTAGAAA 57.121 29.630 0.00 0.00 0.00 2.52
111 112 9.916397 CTATGGATTATTTGACACGTTAGAAAC 57.084 33.333 0.00 0.00 0.00 2.78
112 113 7.731882 TGGATTATTTGACACGTTAGAAACA 57.268 32.000 0.00 0.00 0.00 2.83
113 114 8.155821 TGGATTATTTGACACGTTAGAAACAA 57.844 30.769 0.00 0.00 0.00 2.83
114 115 8.788806 TGGATTATTTGACACGTTAGAAACAAT 58.211 29.630 0.00 0.00 0.00 2.71
115 116 9.620660 GGATTATTTGACACGTTAGAAACAATT 57.379 29.630 0.00 0.00 0.00 2.32
121 122 9.843334 TTTGACACGTTAGAAACAATTTAGTTT 57.157 25.926 0.00 0.00 43.90 2.66
122 123 9.843334 TTGACACGTTAGAAACAATTTAGTTTT 57.157 25.926 0.00 0.00 41.48 2.43
123 124 9.279904 TGACACGTTAGAAACAATTTAGTTTTG 57.720 29.630 0.00 0.00 41.48 2.44
124 125 9.493206 GACACGTTAGAAACAATTTAGTTTTGA 57.507 29.630 0.00 0.00 41.48 2.69
125 126 9.281075 ACACGTTAGAAACAATTTAGTTTTGAC 57.719 29.630 0.00 0.00 41.48 3.18
126 127 9.498307 CACGTTAGAAACAATTTAGTTTTGACT 57.502 29.630 0.00 0.00 41.48 3.41
193 194 5.599359 TGAATCATTTCAAACTAACGCGA 57.401 34.783 15.93 0.00 38.90 5.87
194 195 5.617609 TGAATCATTTCAAACTAACGCGAG 58.382 37.500 15.93 2.26 38.90 5.03
195 196 5.407084 TGAATCATTTCAAACTAACGCGAGA 59.593 36.000 15.93 0.00 38.90 4.04
196 197 4.903638 TCATTTCAAACTAACGCGAGAG 57.096 40.909 15.93 12.13 0.00 3.20
197 198 4.304110 TCATTTCAAACTAACGCGAGAGT 58.696 39.130 15.93 12.88 0.00 3.24
198 199 5.463286 TCATTTCAAACTAACGCGAGAGTA 58.537 37.500 15.93 0.00 0.00 2.59
199 200 6.097356 TCATTTCAAACTAACGCGAGAGTAT 58.903 36.000 15.93 2.39 0.00 2.12
200 201 6.252869 TCATTTCAAACTAACGCGAGAGTATC 59.747 38.462 15.93 0.00 0.00 2.24
201 202 4.690184 TCAAACTAACGCGAGAGTATCA 57.310 40.909 15.93 0.00 37.82 2.15
202 203 5.050644 TCAAACTAACGCGAGAGTATCAA 57.949 39.130 15.93 0.00 37.82 2.57
203 204 5.647589 TCAAACTAACGCGAGAGTATCAAT 58.352 37.500 15.93 0.00 37.82 2.57
204 205 6.788243 TCAAACTAACGCGAGAGTATCAATA 58.212 36.000 15.93 0.00 37.82 1.90
205 206 6.910972 TCAAACTAACGCGAGAGTATCAATAG 59.089 38.462 15.93 1.89 37.82 1.73
206 207 6.374565 AACTAACGCGAGAGTATCAATAGT 57.625 37.500 15.93 2.50 37.82 2.12
207 208 7.488187 AACTAACGCGAGAGTATCAATAGTA 57.512 36.000 15.93 0.00 37.82 1.82
208 209 7.488187 ACTAACGCGAGAGTATCAATAGTAA 57.512 36.000 15.93 0.00 37.82 2.24
209 210 7.351223 ACTAACGCGAGAGTATCAATAGTAAC 58.649 38.462 15.93 0.00 37.82 2.50
210 211 5.105834 ACGCGAGAGTATCAATAGTAACC 57.894 43.478 15.93 0.00 37.82 2.85
211 212 4.149617 CGCGAGAGTATCAATAGTAACCG 58.850 47.826 0.00 0.00 37.82 4.44
212 213 4.084171 CGCGAGAGTATCAATAGTAACCGA 60.084 45.833 0.00 0.00 37.82 4.69
213 214 5.383958 GCGAGAGTATCAATAGTAACCGAG 58.616 45.833 0.00 0.00 37.82 4.63
214 215 5.617308 GCGAGAGTATCAATAGTAACCGAGG 60.617 48.000 0.00 0.00 37.82 4.63
215 216 5.469421 CGAGAGTATCAATAGTAACCGAGGT 59.531 44.000 0.00 0.00 37.82 3.85
216 217 6.566187 CGAGAGTATCAATAGTAACCGAGGTG 60.566 46.154 0.00 0.00 37.82 4.00
217 218 6.363065 AGAGTATCAATAGTAACCGAGGTGA 58.637 40.000 0.00 0.00 37.82 4.02
218 219 6.262720 AGAGTATCAATAGTAACCGAGGTGAC 59.737 42.308 1.38 1.38 37.82 3.67
219 220 5.889853 AGTATCAATAGTAACCGAGGTGACA 59.110 40.000 12.06 0.00 31.94 3.58
220 221 5.871396 ATCAATAGTAACCGAGGTGACAT 57.129 39.130 12.06 1.64 31.94 3.06
221 222 5.006153 TCAATAGTAACCGAGGTGACATG 57.994 43.478 12.06 7.88 31.94 3.21
222 223 4.119862 CAATAGTAACCGAGGTGACATGG 58.880 47.826 12.06 0.00 31.94 3.66
223 224 0.249398 AGTAACCGAGGTGACATGGC 59.751 55.000 12.06 0.00 31.94 4.40
224 225 0.036765 GTAACCGAGGTGACATGGCA 60.037 55.000 0.00 0.00 29.96 4.92
225 226 0.908910 TAACCGAGGTGACATGGCAT 59.091 50.000 3.50 0.00 0.00 4.40
226 227 0.392998 AACCGAGGTGACATGGCATC 60.393 55.000 3.50 3.03 0.00 3.91
227 228 1.221566 CCGAGGTGACATGGCATCA 59.778 57.895 15.86 0.00 0.00 3.07
228 229 0.179037 CCGAGGTGACATGGCATCAT 60.179 55.000 15.86 0.75 0.00 2.45
229 230 1.671979 CGAGGTGACATGGCATCATT 58.328 50.000 15.86 0.00 0.00 2.57
230 231 2.485302 CCGAGGTGACATGGCATCATTA 60.485 50.000 15.86 0.00 0.00 1.90
231 232 3.205338 CGAGGTGACATGGCATCATTAA 58.795 45.455 15.86 0.00 0.00 1.40
232 233 3.817084 CGAGGTGACATGGCATCATTAAT 59.183 43.478 15.86 0.00 0.00 1.40
233 234 4.996758 CGAGGTGACATGGCATCATTAATA 59.003 41.667 15.86 0.00 0.00 0.98
234 235 5.645067 CGAGGTGACATGGCATCATTAATAT 59.355 40.000 15.86 0.00 0.00 1.28
235 236 6.402875 CGAGGTGACATGGCATCATTAATATG 60.403 42.308 15.86 0.00 0.00 1.78
236 237 5.713389 AGGTGACATGGCATCATTAATATGG 59.287 40.000 15.86 0.00 32.40 2.74
237 238 5.105635 GGTGACATGGCATCATTAATATGGG 60.106 44.000 7.03 0.00 32.40 4.00
238 239 5.711506 GTGACATGGCATCATTAATATGGGA 59.288 40.000 3.50 0.00 32.40 4.37
239 240 6.379133 GTGACATGGCATCATTAATATGGGAT 59.621 38.462 3.50 0.00 32.40 3.85
240 241 6.955267 TGACATGGCATCATTAATATGGGATT 59.045 34.615 0.00 0.00 32.40 3.01
241 242 8.114743 TGACATGGCATCATTAATATGGGATTA 58.885 33.333 0.00 0.00 32.40 1.75
242 243 8.297470 ACATGGCATCATTAATATGGGATTAC 57.703 34.615 0.00 0.00 32.40 1.89
243 244 8.117956 ACATGGCATCATTAATATGGGATTACT 58.882 33.333 0.00 0.00 32.40 2.24
244 245 7.943079 TGGCATCATTAATATGGGATTACTG 57.057 36.000 0.00 0.00 32.40 2.74
245 246 7.469343 TGGCATCATTAATATGGGATTACTGT 58.531 34.615 0.00 0.00 32.40 3.55
246 247 8.610369 TGGCATCATTAATATGGGATTACTGTA 58.390 33.333 0.00 0.00 32.40 2.74
247 248 9.113838 GGCATCATTAATATGGGATTACTGTAG 57.886 37.037 0.00 0.00 32.40 2.74
248 249 8.616076 GCATCATTAATATGGGATTACTGTAGC 58.384 37.037 0.00 0.00 32.40 3.58
249 250 9.113838 CATCATTAATATGGGATTACTGTAGCC 57.886 37.037 0.00 1.45 32.40 3.93
250 251 8.449423 TCATTAATATGGGATTACTGTAGCCT 57.551 34.615 8.19 0.00 32.40 4.58
251 252 9.555411 TCATTAATATGGGATTACTGTAGCCTA 57.445 33.333 8.19 3.85 32.40 3.93
258 259 7.253905 TGGGATTACTGTAGCCTAATTATCC 57.746 40.000 8.19 5.83 0.00 2.59
259 260 6.070995 TGGGATTACTGTAGCCTAATTATCCG 60.071 42.308 8.19 0.00 31.87 4.18
260 261 6.338937 GGATTACTGTAGCCTAATTATCCGG 58.661 44.000 0.00 0.00 0.00 5.14
261 262 5.733620 TTACTGTAGCCTAATTATCCGGG 57.266 43.478 0.00 0.00 0.00 5.73
262 263 2.302157 ACTGTAGCCTAATTATCCGGGC 59.698 50.000 0.00 5.52 44.38 6.13
265 266 2.836944 GCCTAATTATCCGGGCGTC 58.163 57.895 0.00 0.00 35.08 5.19
266 267 0.034337 GCCTAATTATCCGGGCGTCA 59.966 55.000 0.00 0.00 35.08 4.35
267 268 1.792006 CCTAATTATCCGGGCGTCAC 58.208 55.000 0.00 0.00 0.00 3.67
268 269 1.069513 CCTAATTATCCGGGCGTCACA 59.930 52.381 0.00 0.00 0.00 3.58
269 270 2.484065 CCTAATTATCCGGGCGTCACAA 60.484 50.000 0.00 0.00 0.00 3.33
270 271 1.375551 AATTATCCGGGCGTCACAAC 58.624 50.000 0.00 0.00 0.00 3.32
271 272 0.463116 ATTATCCGGGCGTCACAACC 60.463 55.000 0.00 0.00 0.00 3.77
272 273 2.524951 TTATCCGGGCGTCACAACCC 62.525 60.000 0.00 0.00 43.25 4.11
274 275 4.636435 CCGGGCGTCACAACCCTT 62.636 66.667 0.00 0.00 44.63 3.95
275 276 2.593436 CGGGCGTCACAACCCTTT 60.593 61.111 1.45 0.00 44.63 3.11
276 277 1.301874 CGGGCGTCACAACCCTTTA 60.302 57.895 1.45 0.00 44.63 1.85
277 278 0.675522 CGGGCGTCACAACCCTTTAT 60.676 55.000 1.45 0.00 44.63 1.40
278 279 1.405797 CGGGCGTCACAACCCTTTATA 60.406 52.381 1.45 0.00 44.63 0.98
279 280 2.011947 GGGCGTCACAACCCTTTATAC 58.988 52.381 0.00 0.00 43.36 1.47
280 281 1.662122 GGCGTCACAACCCTTTATACG 59.338 52.381 0.00 0.00 0.00 3.06
281 282 2.340337 GCGTCACAACCCTTTATACGT 58.660 47.619 0.00 0.00 0.00 3.57
282 283 2.738314 GCGTCACAACCCTTTATACGTT 59.262 45.455 0.00 0.00 0.00 3.99
283 284 3.187022 GCGTCACAACCCTTTATACGTTT 59.813 43.478 0.00 0.00 0.00 3.60
284 285 4.319694 GCGTCACAACCCTTTATACGTTTT 60.320 41.667 0.00 0.00 0.00 2.43
285 286 5.141568 CGTCACAACCCTTTATACGTTTTG 58.858 41.667 0.00 0.00 0.00 2.44
286 287 5.277442 CGTCACAACCCTTTATACGTTTTGT 60.277 40.000 0.00 0.00 0.00 2.83
287 288 5.910723 GTCACAACCCTTTATACGTTTTGTG 59.089 40.000 0.00 5.41 42.30 3.33
288 289 5.821470 TCACAACCCTTTATACGTTTTGTGA 59.179 36.000 9.56 9.56 45.49 3.58
289 290 6.017770 TCACAACCCTTTATACGTTTTGTGAG 60.018 38.462 9.56 0.00 43.81 3.51
290 291 5.239963 ACAACCCTTTATACGTTTTGTGAGG 59.760 40.000 0.00 0.00 0.00 3.86
291 292 4.329392 ACCCTTTATACGTTTTGTGAGGG 58.671 43.478 15.56 15.56 40.66 4.30
292 293 3.692593 CCCTTTATACGTTTTGTGAGGGG 59.307 47.826 0.00 0.00 35.73 4.79
293 294 3.692593 CCTTTATACGTTTTGTGAGGGGG 59.307 47.826 0.00 0.00 0.00 5.40
328 330 3.070302 GGGGCTCTCTCCTGTAATGTTAG 59.930 52.174 0.00 0.00 0.00 2.34
336 338 4.715297 TCTCCTGTAATGTTAGACCCCTTC 59.285 45.833 0.00 0.00 0.00 3.46
353 355 2.243221 CCTTCTTGGATCACCTCCCATT 59.757 50.000 0.00 0.00 44.23 3.16
362 364 2.726821 TCACCTCCCATTTCATGCTTC 58.273 47.619 0.00 0.00 0.00 3.86
371 373 1.882912 TTTCATGCTTCACGACTGCT 58.117 45.000 0.00 0.00 0.00 4.24
433 443 2.861935 CGAAGTACGAACACACAACCTT 59.138 45.455 0.00 0.00 45.77 3.50
460 473 6.127810 TGTATATGTACGTGGACTTGACTC 57.872 41.667 0.00 0.00 33.36 3.36
462 475 0.039798 TGTACGTGGACTTGACTCGC 60.040 55.000 0.00 0.00 0.00 5.03
503 516 2.998670 CACCAGATCCATATCATCGCAC 59.001 50.000 0.00 0.00 34.28 5.34
514 527 0.887933 TCATCGCACACTACTCTGCA 59.112 50.000 0.00 0.00 32.57 4.41
522 535 1.687123 ACACTACTCTGCACGTTCCTT 59.313 47.619 0.00 0.00 0.00 3.36
643 656 2.367377 CCAGGGGCATCTCCTCCA 60.367 66.667 0.00 0.00 35.19 3.86
779 793 6.148150 CGATTGGGTAAACAGCTACAAAGTTA 59.852 38.462 0.00 0.00 0.00 2.24
781 795 6.811253 TGGGTAAACAGCTACAAAGTTATG 57.189 37.500 0.00 0.00 0.00 1.90
796 810 4.928661 AGTTATGCTAAAGTTGCGACAG 57.071 40.909 6.90 0.00 0.00 3.51
816 830 5.855045 ACAGTTAATATGGATCGAAGGGAC 58.145 41.667 0.00 0.00 0.00 4.46
819 833 5.548056 AGTTAATATGGATCGAAGGGACCAT 59.452 40.000 0.00 0.00 44.03 3.55
838 852 6.238786 GGACCATGATATAGTATCTGTAGGCG 60.239 46.154 0.00 0.00 0.00 5.52
846 860 4.506886 AGTATCTGTAGGCGTGATTAGC 57.493 45.455 0.00 0.00 0.00 3.09
1021 1043 4.280929 CGATGGACAGGATATTGGTGAGTA 59.719 45.833 0.00 0.00 0.00 2.59
1051 1073 1.710339 GCGATGAACTCCGTCTTGC 59.290 57.895 0.00 0.00 0.00 4.01
1057 1079 1.338973 TGAACTCCGTCTTGCGTAAGT 59.661 47.619 13.14 0.00 39.32 2.24
1352 1380 1.227350 CTCGCCATCGGATTGCTCA 60.227 57.895 11.67 0.00 36.13 4.26
1569 1606 9.574516 AAGAAGTTGAAAGTGGTATCTATTGTT 57.425 29.630 0.00 0.00 0.00 2.83
1692 1729 2.229784 GCCAGACATCCCAAAACTTCTG 59.770 50.000 0.00 0.00 0.00 3.02
1917 3206 8.970859 AGTCTTGGTAGAAAATCATTAGATGG 57.029 34.615 0.00 0.00 30.71 3.51
2206 4294 6.978343 TGGTTCGATGTCTTAATTACTTGG 57.022 37.500 0.00 0.00 0.00 3.61
2499 4627 1.500474 TGCCCTCACCATCTTAGAGG 58.500 55.000 0.00 0.00 46.71 3.69
2793 4939 1.477553 TGGATGGCAGAAGGATTTGC 58.522 50.000 0.00 0.00 39.56 3.68
2913 5062 2.227388 GAGGGTCAGTGACAAAATGCAG 59.773 50.000 24.20 0.00 33.68 4.41
2938 5087 9.129532 AGAATACATGATATGATGCTCGATCTA 57.870 33.333 0.00 0.00 31.55 1.98
3028 5177 4.043037 GGATTACAAGATCCGTCGACTT 57.957 45.455 14.70 0.00 36.53 3.01
3124 5273 3.691609 CAGTTATGTTCTTTGGGAGCTCC 59.308 47.826 25.59 25.59 0.00 4.70
3183 5332 4.874396 CCGAGTTCTGTTTATTAACCTCCC 59.126 45.833 0.00 0.00 33.15 4.30
3212 5361 2.289320 ACAGTTGATCTGAGTGGACTGC 60.289 50.000 10.97 0.00 46.27 4.40
3251 5400 4.338964 TGAGGTATTTACGGATTAGTCGCA 59.661 41.667 0.00 0.00 0.00 5.10
3272 5421 4.615912 GCATTTGCTTGTACCAACTACCAG 60.616 45.833 0.00 0.00 38.21 4.00
3313 5462 5.356751 ACAACACTTGCAAACACTTGATCTA 59.643 36.000 0.00 0.00 34.14 1.98
3349 5525 9.392506 TCCAATATTCCCTCAGATATAGTTCAA 57.607 33.333 0.00 0.00 0.00 2.69
3365 5541 5.290493 AGTTCAACTACCACACTTGATGA 57.710 39.130 0.00 0.00 0.00 2.92
3382 5558 8.680001 CACTTGATGAATCTAAATGTTGGATCA 58.320 33.333 0.00 0.00 29.89 2.92
3386 5562 7.718314 TGATGAATCTAAATGTTGGATCAGAGG 59.282 37.037 0.00 0.00 29.89 3.69
3420 5596 2.265367 TGGCAAGATGAAGTCCCTACA 58.735 47.619 0.00 0.00 0.00 2.74
3484 5660 3.837213 ATCGAAAACATTGGTGAGCTG 57.163 42.857 0.00 0.00 0.00 4.24
3525 5701 0.769873 ATCTCATGTGGCCCTCATCC 59.230 55.000 0.00 0.00 0.00 3.51
3529 5705 2.000701 ATGTGGCCCTCATCCGGAA 61.001 57.895 9.01 0.00 0.00 4.30
3545 5721 0.041135 GGAAGATACGGAGAGACGCG 60.041 60.000 3.53 3.53 37.37 6.01
3571 5747 2.693591 TGTATTACGCTCTTCTCTGGGG 59.306 50.000 0.00 0.00 0.00 4.96
3580 5756 1.623811 TCTTCTCTGGGGAAACTTCGG 59.376 52.381 0.00 0.00 0.00 4.30
3589 5765 2.554564 GGGGAAACTTCGGAACCTTGAT 60.555 50.000 0.00 0.00 0.00 2.57
3596 5772 2.396590 TCGGAACCTTGATAACCTGC 57.603 50.000 0.00 0.00 0.00 4.85
3619 5795 1.216064 TCAGTATGAGGGGCTGCATT 58.784 50.000 0.50 0.00 42.56 3.56
3712 5888 2.929301 TGGTTTTCCAGGATCCCTAGT 58.071 47.619 8.55 0.00 46.22 2.57
3772 5948 3.045688 GCAAGTTTGTGAGCTGCTAAAC 58.954 45.455 15.35 15.35 34.21 2.01
3796 5972 4.715534 TGGTGTTGGTATCCTTTCAGAA 57.284 40.909 0.00 0.00 0.00 3.02
3987 6163 7.542890 AGACTCGAGGTAATGCATAATATGAG 58.457 38.462 18.41 6.43 0.00 2.90
4048 6224 2.032030 GCACTTGTTAGCGCTTGAAGAA 60.032 45.455 18.68 8.93 0.00 2.52
4189 6365 6.918569 TCTTCCGTCGCAATTTGAAATTTTTA 59.081 30.769 0.00 0.00 0.00 1.52
4192 6368 5.294248 CGTCGCAATTTGAAATTTTTACCG 58.706 37.500 0.00 0.36 0.00 4.02
4244 6420 6.256539 CAGCAACATCTCGTATGTACAAATCT 59.743 38.462 0.00 0.00 0.00 2.40
4270 6446 3.388024 CCTTCATTCTCCCCGTCTCAATA 59.612 47.826 0.00 0.00 0.00 1.90
4285 6461 6.223120 CGTCTCAATATCTCTCTCTCTCTCA 58.777 44.000 0.00 0.00 0.00 3.27
4299 6518 8.960591 TCTCTCTCTCTCATTTTTGTTTGTTTT 58.039 29.630 0.00 0.00 0.00 2.43
4333 6552 5.667626 ACCATGAAATGTACCTCTACCTCAT 59.332 40.000 0.00 0.00 44.81 2.90
4343 6562 2.428890 CCTCTACCTCATCAGTCACCAC 59.571 54.545 0.00 0.00 0.00 4.16
4346 6565 0.541998 ACCTCATCAGTCACCACGGA 60.542 55.000 0.00 0.00 0.00 4.69
4350 6569 1.135112 TCATCAGTCACCACGGAATCG 60.135 52.381 0.00 0.00 43.02 3.34
4382 6601 9.014533 GCTTTGCTAGCTATGATTTTCTTTTAC 57.985 33.333 17.23 0.00 46.77 2.01
4402 6621 9.705290 CTTTTACTTTGTTATGGCAAGGTTTAT 57.295 29.630 0.00 0.00 39.05 1.40
4414 6633 8.863872 ATGGCAAGGTTTATGTAAGATATACC 57.136 34.615 0.00 0.00 0.00 2.73
4564 6792 9.731819 CTAATACGACATGTAGACTTTGTATGT 57.268 33.333 13.30 0.00 36.25 2.29
4574 6802 8.583810 TGTAGACTTTGTATGTTGTGTCTTAC 57.416 34.615 0.00 0.00 36.39 2.34
4595 6823 7.610692 TCTTACGTTCCTCTCTTCAATCTTCTA 59.389 37.037 0.00 0.00 0.00 2.10
4629 6857 6.668323 TCTTTATTTTCTTGAGGAAACTGCG 58.332 36.000 0.00 0.00 44.43 5.18
4633 6861 3.695830 TTCTTGAGGAAACTGCGGTAT 57.304 42.857 0.00 0.00 44.43 2.73
4718 6946 7.918562 GCCTGAGTTTTTACAAAATTACTGACA 59.081 33.333 0.00 0.00 0.00 3.58
4719 6947 9.233232 CCTGAGTTTTTACAAAATTACTGACAC 57.767 33.333 0.00 0.00 0.00 3.67
4763 6991 4.007659 GGAAAGGAGCGGATTTCAGTTTA 58.992 43.478 11.09 0.00 37.19 2.01
4796 7024 2.669569 CAGGCCAGGGTCACAACG 60.670 66.667 5.01 0.00 0.00 4.10
4821 7049 5.046950 ACAAACAGGTAGGAAGATGTCTCTC 60.047 44.000 0.00 0.00 0.00 3.20
4822 7050 4.323569 ACAGGTAGGAAGATGTCTCTCA 57.676 45.455 0.00 0.00 0.00 3.27
4823 7051 4.678256 ACAGGTAGGAAGATGTCTCTCAA 58.322 43.478 0.00 0.00 0.00 3.02
4824 7052 5.087323 ACAGGTAGGAAGATGTCTCTCAAA 58.913 41.667 0.00 0.00 0.00 2.69
4825 7053 5.723887 ACAGGTAGGAAGATGTCTCTCAAAT 59.276 40.000 0.00 0.00 0.00 2.32
4826 7054 6.047870 CAGGTAGGAAGATGTCTCTCAAATG 58.952 44.000 0.00 0.00 0.00 2.32
4827 7055 5.723887 AGGTAGGAAGATGTCTCTCAAATGT 59.276 40.000 0.00 0.00 0.00 2.71
4828 7056 6.897966 AGGTAGGAAGATGTCTCTCAAATGTA 59.102 38.462 0.00 0.00 0.00 2.29
4829 7057 7.566879 AGGTAGGAAGATGTCTCTCAAATGTAT 59.433 37.037 0.00 0.00 0.00 2.29
4830 7058 7.655328 GGTAGGAAGATGTCTCTCAAATGTATG 59.345 40.741 0.00 0.00 0.00 2.39
4831 7059 7.192852 AGGAAGATGTCTCTCAAATGTATGT 57.807 36.000 0.00 0.00 0.00 2.29
4832 7060 7.271511 AGGAAGATGTCTCTCAAATGTATGTC 58.728 38.462 0.00 0.00 0.00 3.06
4833 7061 7.044181 GGAAGATGTCTCTCAAATGTATGTCA 58.956 38.462 0.00 0.00 0.00 3.58
4834 7062 7.224362 GGAAGATGTCTCTCAAATGTATGTCAG 59.776 40.741 0.00 0.00 0.00 3.51
4835 7063 6.047870 AGATGTCTCTCAAATGTATGTCAGC 58.952 40.000 0.00 0.00 0.00 4.26
4836 7064 5.151297 TGTCTCTCAAATGTATGTCAGCA 57.849 39.130 0.00 0.00 0.00 4.41
4837 7065 5.550290 TGTCTCTCAAATGTATGTCAGCAA 58.450 37.500 0.00 0.00 0.00 3.91
4838 7066 5.409520 TGTCTCTCAAATGTATGTCAGCAAC 59.590 40.000 0.00 0.00 0.00 4.17
4839 7067 5.409520 GTCTCTCAAATGTATGTCAGCAACA 59.590 40.000 0.00 0.00 43.51 3.33
4841 7069 7.278646 GTCTCTCAAATGTATGTCAGCAACATA 59.721 37.037 7.62 7.62 46.95 2.29
4851 7079 6.683974 ATGTCAGCAACATAGAAATGTACC 57.316 37.500 3.15 0.00 46.95 3.34
4852 7080 5.804639 TGTCAGCAACATAGAAATGTACCT 58.195 37.500 0.00 0.00 45.79 3.08
4853 7081 5.874810 TGTCAGCAACATAGAAATGTACCTC 59.125 40.000 0.00 0.00 45.79 3.85
4854 7082 6.109359 GTCAGCAACATAGAAATGTACCTCT 58.891 40.000 0.00 0.00 45.79 3.69
4855 7083 6.256757 GTCAGCAACATAGAAATGTACCTCTC 59.743 42.308 0.00 0.00 45.79 3.20
4856 7084 5.525378 CAGCAACATAGAAATGTACCTCTCC 59.475 44.000 0.00 0.00 45.79 3.71
4857 7085 5.426833 AGCAACATAGAAATGTACCTCTCCT 59.573 40.000 0.00 0.00 45.79 3.69
4858 7086 5.525378 GCAACATAGAAATGTACCTCTCCTG 59.475 44.000 0.00 0.00 45.79 3.86
4859 7087 6.644347 CAACATAGAAATGTACCTCTCCTGT 58.356 40.000 0.00 0.00 45.79 4.00
4860 7088 6.875972 ACATAGAAATGTACCTCTCCTGTT 57.124 37.500 0.00 0.00 44.66 3.16
4861 7089 6.879400 ACATAGAAATGTACCTCTCCTGTTC 58.121 40.000 0.00 0.00 44.66 3.18
4862 7090 6.670027 ACATAGAAATGTACCTCTCCTGTTCT 59.330 38.462 0.00 0.00 44.66 3.01
4863 7091 7.181125 ACATAGAAATGTACCTCTCCTGTTCTT 59.819 37.037 0.00 0.00 44.66 2.52
4864 7092 6.043854 AGAAATGTACCTCTCCTGTTCTTC 57.956 41.667 0.00 0.00 0.00 2.87
4865 7093 5.782845 AGAAATGTACCTCTCCTGTTCTTCT 59.217 40.000 0.00 0.00 0.00 2.85
4866 7094 5.669164 AATGTACCTCTCCTGTTCTTCTC 57.331 43.478 0.00 0.00 0.00 2.87
4867 7095 4.390129 TGTACCTCTCCTGTTCTTCTCT 57.610 45.455 0.00 0.00 0.00 3.10
4897 7125 4.519540 TCAAGCTATTGGTTTTTGCTCC 57.480 40.909 0.00 0.00 37.02 4.70
4908 7136 7.775053 TTGGTTTTTGCTCCTGATACTATTT 57.225 32.000 0.00 0.00 0.00 1.40
4909 7137 7.391148 TGGTTTTTGCTCCTGATACTATTTC 57.609 36.000 0.00 0.00 0.00 2.17
4910 7138 6.945435 TGGTTTTTGCTCCTGATACTATTTCA 59.055 34.615 0.00 0.00 0.00 2.69
4911 7139 7.615365 TGGTTTTTGCTCCTGATACTATTTCAT 59.385 33.333 0.00 0.00 0.00 2.57
4912 7140 8.131731 GGTTTTTGCTCCTGATACTATTTCATC 58.868 37.037 0.00 0.00 0.00 2.92
4913 7141 8.897752 GTTTTTGCTCCTGATACTATTTCATCT 58.102 33.333 0.00 0.00 0.00 2.90
4914 7142 8.442632 TTTTGCTCCTGATACTATTTCATCTG 57.557 34.615 0.00 0.00 0.00 2.90
4915 7143 6.983906 TGCTCCTGATACTATTTCATCTGA 57.016 37.500 0.00 0.00 0.00 3.27
4916 7144 6.990798 TGCTCCTGATACTATTTCATCTGAG 58.009 40.000 0.00 0.00 0.00 3.35
4917 7145 5.868801 GCTCCTGATACTATTTCATCTGAGC 59.131 44.000 0.00 0.00 38.42 4.26
4918 7146 6.018589 TCCTGATACTATTTCATCTGAGCG 57.981 41.667 0.00 0.00 0.00 5.03
4919 7147 4.624882 CCTGATACTATTTCATCTGAGCGC 59.375 45.833 0.00 0.00 0.00 5.92
4920 7148 5.459536 TGATACTATTTCATCTGAGCGCT 57.540 39.130 11.27 11.27 0.00 5.92
4921 7149 5.847304 TGATACTATTTCATCTGAGCGCTT 58.153 37.500 13.26 0.00 0.00 4.68
4922 7150 5.923114 TGATACTATTTCATCTGAGCGCTTC 59.077 40.000 13.26 5.55 0.00 3.86
4923 7151 4.399004 ACTATTTCATCTGAGCGCTTCT 57.601 40.909 13.26 0.00 0.00 2.85
4924 7152 4.764172 ACTATTTCATCTGAGCGCTTCTT 58.236 39.130 13.26 0.00 0.00 2.52
4925 7153 4.808364 ACTATTTCATCTGAGCGCTTCTTC 59.192 41.667 13.26 0.00 0.00 2.87
4926 7154 3.325293 TTTCATCTGAGCGCTTCTTCT 57.675 42.857 13.26 0.00 0.00 2.85
4927 7155 2.575694 TCATCTGAGCGCTTCTTCTC 57.424 50.000 13.26 0.00 0.00 2.87
4928 7156 2.098614 TCATCTGAGCGCTTCTTCTCT 58.901 47.619 13.26 0.00 0.00 3.10
4929 7157 2.495270 TCATCTGAGCGCTTCTTCTCTT 59.505 45.455 13.26 0.00 0.00 2.85
4930 7158 3.056250 TCATCTGAGCGCTTCTTCTCTTT 60.056 43.478 13.26 0.00 0.00 2.52
4931 7159 2.953020 TCTGAGCGCTTCTTCTCTTTC 58.047 47.619 13.26 0.00 0.00 2.62
4932 7160 1.653114 CTGAGCGCTTCTTCTCTTTCG 59.347 52.381 13.26 0.00 0.00 3.46
4933 7161 1.000163 TGAGCGCTTCTTCTCTTTCGT 60.000 47.619 13.26 0.00 0.00 3.85
4934 7162 2.062519 GAGCGCTTCTTCTCTTTCGTT 58.937 47.619 13.26 0.00 0.00 3.85
4935 7163 1.795286 AGCGCTTCTTCTCTTTCGTTG 59.205 47.619 2.64 0.00 0.00 4.10
4936 7164 1.723067 GCGCTTCTTCTCTTTCGTTGC 60.723 52.381 0.00 0.00 0.00 4.17
4937 7165 1.136224 CGCTTCTTCTCTTTCGTTGCC 60.136 52.381 0.00 0.00 0.00 4.52
4938 7166 1.136224 GCTTCTTCTCTTTCGTTGCCG 60.136 52.381 0.00 0.00 0.00 5.69
4983 7211 3.821033 GCTTGTAACAGGATTGTTGGAGT 59.179 43.478 3.33 0.00 46.63 3.85
4991 7219 1.541588 GGATTGTTGGAGTGCAGGAAC 59.458 52.381 0.00 0.00 0.00 3.62
5033 7261 6.403527 CGTGCCTGAATTATTCATTTCAGTGA 60.404 38.462 8.17 0.00 44.70 3.41
5034 7262 6.749118 GTGCCTGAATTATTCATTTCAGTGAC 59.251 38.462 8.17 4.53 44.70 3.67
5035 7263 6.433716 TGCCTGAATTATTCATTTCAGTGACA 59.566 34.615 8.17 0.00 44.70 3.58
5036 7264 6.971184 GCCTGAATTATTCATTTCAGTGACAG 59.029 38.462 8.17 0.00 44.70 3.51
5037 7265 7.148188 GCCTGAATTATTCATTTCAGTGACAGA 60.148 37.037 8.17 0.00 44.70 3.41
5038 7266 8.900781 CCTGAATTATTCATTTCAGTGACAGAT 58.099 33.333 8.17 0.00 44.70 2.90
5039 7267 9.932699 CTGAATTATTCATTTCAGTGACAGATC 57.067 33.333 8.17 0.00 42.41 2.75
5070 7298 3.814625 TGTTGTTCTGGTGTGCTGAATA 58.185 40.909 0.00 0.00 0.00 1.75
5074 7302 3.814842 TGTTCTGGTGTGCTGAATAACTG 59.185 43.478 0.00 0.00 0.00 3.16
5075 7303 3.057969 TCTGGTGTGCTGAATAACTGG 57.942 47.619 0.00 0.00 0.00 4.00
5076 7304 1.470098 CTGGTGTGCTGAATAACTGGC 59.530 52.381 0.00 0.00 0.00 4.85
5129 7359 5.303971 CCCTGATGCTCCTACTTTGATAAG 58.696 45.833 0.00 0.00 37.40 1.73
5135 7365 8.758829 TGATGCTCCTACTTTGATAAGAACTTA 58.241 33.333 0.00 0.00 35.30 2.24
5172 7404 9.832445 TTATCCTGGATTTCAATACAAGTAGAC 57.168 33.333 15.55 0.00 0.00 2.59
5173 7405 6.338146 TCCTGGATTTCAATACAAGTAGACG 58.662 40.000 0.00 0.00 0.00 4.18
5174 7406 6.153851 TCCTGGATTTCAATACAAGTAGACGA 59.846 38.462 0.00 0.00 0.00 4.20
5189 7421 4.976731 AGTAGACGATGCGTTTGATATGAC 59.023 41.667 0.00 0.00 41.37 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 9.660180 AGTAAAGAAAATTGTGGCTAAAAACAA 57.340 25.926 0.00 0.00 40.36 2.83
9 10 9.660180 AAGTAAAGAAAATTGTGGCTAAAAACA 57.340 25.926 0.00 0.00 0.00 2.83
14 15 9.959749 CACTAAAGTAAAGAAAATTGTGGCTAA 57.040 29.630 0.00 0.00 0.00 3.09
15 16 8.079809 GCACTAAAGTAAAGAAAATTGTGGCTA 58.920 33.333 0.00 0.00 0.00 3.93
16 17 6.923508 GCACTAAAGTAAAGAAAATTGTGGCT 59.076 34.615 0.00 0.00 0.00 4.75
17 18 6.699642 TGCACTAAAGTAAAGAAAATTGTGGC 59.300 34.615 0.00 0.00 0.00 5.01
18 19 8.816640 ATGCACTAAAGTAAAGAAAATTGTGG 57.183 30.769 0.00 0.00 0.00 4.17
19 20 9.683069 AGATGCACTAAAGTAAAGAAAATTGTG 57.317 29.630 0.00 0.00 0.00 3.33
46 47 9.668497 GAGAGACCACACCTTTATAAAGTATTT 57.332 33.333 20.99 2.79 43.42 1.40
47 48 9.047947 AGAGAGACCACACCTTTATAAAGTATT 57.952 33.333 20.99 5.22 34.20 1.89
48 49 8.611051 AGAGAGACCACACCTTTATAAAGTAT 57.389 34.615 20.99 8.54 34.20 2.12
49 50 8.964772 GTAGAGAGACCACACCTTTATAAAGTA 58.035 37.037 20.99 2.75 34.20 2.24
50 51 6.936968 AGAGAGACCACACCTTTATAAAGT 57.063 37.500 20.99 8.89 34.20 2.66
51 52 7.093465 TGGTAGAGAGACCACACCTTTATAAAG 60.093 40.741 16.90 16.90 44.79 1.85
52 53 6.727231 TGGTAGAGAGACCACACCTTTATAAA 59.273 38.462 0.00 0.00 44.79 1.40
53 54 6.258354 TGGTAGAGAGACCACACCTTTATAA 58.742 40.000 0.00 0.00 44.79 0.98
54 55 5.834460 TGGTAGAGAGACCACACCTTTATA 58.166 41.667 0.00 0.00 44.79 0.98
55 56 4.684724 TGGTAGAGAGACCACACCTTTAT 58.315 43.478 0.00 0.00 44.79 1.40
56 57 4.087182 CTGGTAGAGAGACCACACCTTTA 58.913 47.826 0.00 0.00 44.79 1.85
57 58 2.900546 CTGGTAGAGAGACCACACCTTT 59.099 50.000 0.00 0.00 44.79 3.11
58 59 2.530701 CTGGTAGAGAGACCACACCTT 58.469 52.381 0.00 0.00 44.79 3.50
59 60 1.893210 GCTGGTAGAGAGACCACACCT 60.893 57.143 0.00 0.00 44.79 4.00
60 61 0.533032 GCTGGTAGAGAGACCACACC 59.467 60.000 0.00 0.00 44.79 4.16
61 62 1.257743 TGCTGGTAGAGAGACCACAC 58.742 55.000 0.00 0.00 44.79 3.82
62 63 1.827344 CATGCTGGTAGAGAGACCACA 59.173 52.381 0.00 0.00 44.79 4.17
63 64 1.137872 CCATGCTGGTAGAGAGACCAC 59.862 57.143 0.00 0.00 44.79 4.16
75 76 6.005823 TCAAATAATCCATAGACCATGCTGG 58.994 40.000 1.16 1.16 45.02 4.85
76 77 6.487668 TGTCAAATAATCCATAGACCATGCTG 59.512 38.462 0.00 0.00 32.84 4.41
77 78 6.488006 GTGTCAAATAATCCATAGACCATGCT 59.512 38.462 0.00 0.00 32.84 3.79
78 79 6.566564 CGTGTCAAATAATCCATAGACCATGC 60.567 42.308 0.00 0.00 32.84 4.06
79 80 6.483307 ACGTGTCAAATAATCCATAGACCATG 59.517 38.462 0.00 0.00 0.00 3.66
80 81 6.591935 ACGTGTCAAATAATCCATAGACCAT 58.408 36.000 0.00 0.00 0.00 3.55
81 82 5.984725 ACGTGTCAAATAATCCATAGACCA 58.015 37.500 0.00 0.00 0.00 4.02
82 83 6.920569 AACGTGTCAAATAATCCATAGACC 57.079 37.500 0.00 0.00 0.00 3.85
83 84 8.867112 TCTAACGTGTCAAATAATCCATAGAC 57.133 34.615 0.00 0.00 0.00 2.59
84 85 9.878667 TTTCTAACGTGTCAAATAATCCATAGA 57.121 29.630 0.00 0.00 0.00 1.98
85 86 9.916397 GTTTCTAACGTGTCAAATAATCCATAG 57.084 33.333 0.00 0.00 0.00 2.23
86 87 9.438228 TGTTTCTAACGTGTCAAATAATCCATA 57.562 29.630 0.00 0.00 0.00 2.74
87 88 8.330466 TGTTTCTAACGTGTCAAATAATCCAT 57.670 30.769 0.00 0.00 0.00 3.41
88 89 7.731882 TGTTTCTAACGTGTCAAATAATCCA 57.268 32.000 0.00 0.00 0.00 3.41
89 90 9.620660 AATTGTTTCTAACGTGTCAAATAATCC 57.379 29.630 0.00 0.00 0.00 3.01
95 96 9.843334 AAACTAAATTGTTTCTAACGTGTCAAA 57.157 25.926 0.00 0.00 35.50 2.69
96 97 9.843334 AAAACTAAATTGTTTCTAACGTGTCAA 57.157 25.926 0.00 0.00 38.98 3.18
97 98 9.279904 CAAAACTAAATTGTTTCTAACGTGTCA 57.720 29.630 0.00 0.00 38.98 3.58
98 99 9.493206 TCAAAACTAAATTGTTTCTAACGTGTC 57.507 29.630 0.00 0.00 38.98 3.67
99 100 9.281075 GTCAAAACTAAATTGTTTCTAACGTGT 57.719 29.630 0.00 0.00 38.98 4.49
100 101 9.498307 AGTCAAAACTAAATTGTTTCTAACGTG 57.502 29.630 0.00 0.00 38.98 4.49
171 172 5.407084 TCTCGCGTTAGTTTGAAATGATTCA 59.593 36.000 5.77 0.00 43.70 2.57
172 173 5.854157 TCTCGCGTTAGTTTGAAATGATTC 58.146 37.500 5.77 0.00 36.04 2.52
173 174 5.408604 ACTCTCGCGTTAGTTTGAAATGATT 59.591 36.000 5.77 0.00 0.00 2.57
174 175 4.929808 ACTCTCGCGTTAGTTTGAAATGAT 59.070 37.500 5.77 0.00 0.00 2.45
175 176 4.304110 ACTCTCGCGTTAGTTTGAAATGA 58.696 39.130 5.77 0.00 0.00 2.57
176 177 4.647291 ACTCTCGCGTTAGTTTGAAATG 57.353 40.909 5.77 0.00 0.00 2.32
177 178 6.097356 TGATACTCTCGCGTTAGTTTGAAAT 58.903 36.000 18.38 8.04 0.00 2.17
178 179 5.463286 TGATACTCTCGCGTTAGTTTGAAA 58.537 37.500 18.38 4.06 0.00 2.69
179 180 5.050644 TGATACTCTCGCGTTAGTTTGAA 57.949 39.130 18.38 4.37 0.00 2.69
180 181 4.690184 TGATACTCTCGCGTTAGTTTGA 57.310 40.909 18.38 5.53 0.00 2.69
181 182 5.950965 ATTGATACTCTCGCGTTAGTTTG 57.049 39.130 18.38 3.46 0.00 2.93
182 183 6.793349 ACTATTGATACTCTCGCGTTAGTTT 58.207 36.000 18.38 12.26 0.00 2.66
183 184 6.374565 ACTATTGATACTCTCGCGTTAGTT 57.625 37.500 18.38 8.86 0.00 2.24
184 185 7.351223 GTTACTATTGATACTCTCGCGTTAGT 58.649 38.462 17.55 17.55 0.00 2.24
185 186 6.796072 GGTTACTATTGATACTCTCGCGTTAG 59.204 42.308 5.77 7.50 0.00 2.34
186 187 6.564686 CGGTTACTATTGATACTCTCGCGTTA 60.565 42.308 5.77 0.00 0.00 3.18
187 188 5.517904 GGTTACTATTGATACTCTCGCGTT 58.482 41.667 5.77 0.00 0.00 4.84
188 189 4.319333 CGGTTACTATTGATACTCTCGCGT 60.319 45.833 5.77 0.00 0.00 6.01
189 190 4.084171 TCGGTTACTATTGATACTCTCGCG 60.084 45.833 0.00 0.00 0.00 5.87
190 191 5.354054 TCGGTTACTATTGATACTCTCGC 57.646 43.478 0.00 0.00 0.00 5.03
191 192 5.469421 ACCTCGGTTACTATTGATACTCTCG 59.531 44.000 0.00 0.00 0.00 4.04
192 193 6.485984 TCACCTCGGTTACTATTGATACTCTC 59.514 42.308 0.00 0.00 0.00 3.20
193 194 6.262720 GTCACCTCGGTTACTATTGATACTCT 59.737 42.308 0.00 0.00 0.00 3.24
194 195 6.039047 TGTCACCTCGGTTACTATTGATACTC 59.961 42.308 2.47 0.00 0.00 2.59
195 196 5.889853 TGTCACCTCGGTTACTATTGATACT 59.110 40.000 2.47 0.00 0.00 2.12
196 197 6.140303 TGTCACCTCGGTTACTATTGATAC 57.860 41.667 2.47 0.00 0.00 2.24
197 198 6.239204 CCATGTCACCTCGGTTACTATTGATA 60.239 42.308 2.47 0.00 0.00 2.15
198 199 5.453339 CCATGTCACCTCGGTTACTATTGAT 60.453 44.000 2.47 0.00 0.00 2.57
199 200 4.142026 CCATGTCACCTCGGTTACTATTGA 60.142 45.833 2.47 0.00 0.00 2.57
200 201 4.119862 CCATGTCACCTCGGTTACTATTG 58.880 47.826 2.47 0.00 0.00 1.90
201 202 3.431766 GCCATGTCACCTCGGTTACTATT 60.432 47.826 2.47 0.00 0.00 1.73
202 203 2.102588 GCCATGTCACCTCGGTTACTAT 59.897 50.000 2.47 0.00 0.00 2.12
203 204 1.479323 GCCATGTCACCTCGGTTACTA 59.521 52.381 2.47 0.00 0.00 1.82
204 205 0.249398 GCCATGTCACCTCGGTTACT 59.751 55.000 2.47 0.00 0.00 2.24
205 206 0.036765 TGCCATGTCACCTCGGTTAC 60.037 55.000 0.00 0.00 0.00 2.50
206 207 0.908910 ATGCCATGTCACCTCGGTTA 59.091 50.000 0.00 0.00 0.00 2.85
207 208 0.392998 GATGCCATGTCACCTCGGTT 60.393 55.000 0.00 0.00 0.00 4.44
208 209 1.221840 GATGCCATGTCACCTCGGT 59.778 57.895 0.00 0.00 0.00 4.69
209 210 0.179037 ATGATGCCATGTCACCTCGG 60.179 55.000 0.00 0.00 0.00 4.63
210 211 1.671979 AATGATGCCATGTCACCTCG 58.328 50.000 0.00 0.00 32.36 4.63
211 212 6.127814 CCATATTAATGATGCCATGTCACCTC 60.128 42.308 0.00 0.00 34.84 3.85
212 213 5.713389 CCATATTAATGATGCCATGTCACCT 59.287 40.000 0.00 0.00 34.84 4.00
213 214 5.105635 CCCATATTAATGATGCCATGTCACC 60.106 44.000 0.00 0.00 34.84 4.02
214 215 5.711506 TCCCATATTAATGATGCCATGTCAC 59.288 40.000 0.00 0.00 34.84 3.67
215 216 5.890049 TCCCATATTAATGATGCCATGTCA 58.110 37.500 0.00 0.00 34.84 3.58
216 217 7.414222 AATCCCATATTAATGATGCCATGTC 57.586 36.000 0.00 0.00 34.84 3.06
217 218 8.117956 AGTAATCCCATATTAATGATGCCATGT 58.882 33.333 0.00 0.00 34.84 3.21
218 219 8.410912 CAGTAATCCCATATTAATGATGCCATG 58.589 37.037 0.00 0.00 34.84 3.66
219 220 8.117956 ACAGTAATCCCATATTAATGATGCCAT 58.882 33.333 10.98 0.00 34.72 4.40
220 221 7.469343 ACAGTAATCCCATATTAATGATGCCA 58.531 34.615 10.98 0.00 34.72 4.92
221 222 7.944729 ACAGTAATCCCATATTAATGATGCC 57.055 36.000 10.98 0.00 34.72 4.40
222 223 8.616076 GCTACAGTAATCCCATATTAATGATGC 58.384 37.037 10.98 10.04 34.72 3.91
223 224 9.113838 GGCTACAGTAATCCCATATTAATGATG 57.886 37.037 10.98 0.00 34.72 3.07
224 225 9.062367 AGGCTACAGTAATCCCATATTAATGAT 57.938 33.333 10.98 0.00 34.72 2.45
225 226 8.449423 AGGCTACAGTAATCCCATATTAATGA 57.551 34.615 10.98 0.00 34.72 2.57
232 233 8.989131 GGATAATTAGGCTACAGTAATCCCATA 58.011 37.037 0.00 0.00 0.00 2.74
233 234 7.364762 CGGATAATTAGGCTACAGTAATCCCAT 60.365 40.741 0.00 0.00 0.00 4.00
234 235 6.070995 CGGATAATTAGGCTACAGTAATCCCA 60.071 42.308 0.00 0.00 0.00 4.37
235 236 6.338937 CGGATAATTAGGCTACAGTAATCCC 58.661 44.000 0.00 0.00 0.00 3.85
236 237 6.338937 CCGGATAATTAGGCTACAGTAATCC 58.661 44.000 0.00 2.50 0.00 3.01
237 238 6.338937 CCCGGATAATTAGGCTACAGTAATC 58.661 44.000 0.73 0.00 0.00 1.75
238 239 5.338137 GCCCGGATAATTAGGCTACAGTAAT 60.338 44.000 0.73 0.00 42.34 1.89
239 240 4.020839 GCCCGGATAATTAGGCTACAGTAA 60.021 45.833 0.73 0.00 42.34 2.24
240 241 3.512724 GCCCGGATAATTAGGCTACAGTA 59.487 47.826 0.73 0.00 42.34 2.74
241 242 2.302157 GCCCGGATAATTAGGCTACAGT 59.698 50.000 0.73 0.00 42.34 3.55
242 243 2.674177 CGCCCGGATAATTAGGCTACAG 60.674 54.545 0.73 0.00 43.48 2.74
243 244 1.274167 CGCCCGGATAATTAGGCTACA 59.726 52.381 0.73 0.00 43.48 2.74
244 245 1.274447 ACGCCCGGATAATTAGGCTAC 59.726 52.381 0.73 0.00 43.48 3.58
245 246 1.547372 GACGCCCGGATAATTAGGCTA 59.453 52.381 0.73 0.00 43.48 3.93
246 247 0.320697 GACGCCCGGATAATTAGGCT 59.679 55.000 0.73 0.00 43.48 4.58
247 248 0.034337 TGACGCCCGGATAATTAGGC 59.966 55.000 0.73 3.86 42.18 3.93
248 249 1.069513 TGTGACGCCCGGATAATTAGG 59.930 52.381 0.73 0.00 0.00 2.69
249 250 2.519377 TGTGACGCCCGGATAATTAG 57.481 50.000 0.73 0.00 0.00 1.73
250 251 2.553086 GTTGTGACGCCCGGATAATTA 58.447 47.619 0.73 0.00 0.00 1.40
251 252 1.375551 GTTGTGACGCCCGGATAATT 58.624 50.000 0.73 0.00 0.00 1.40
252 253 0.463116 GGTTGTGACGCCCGGATAAT 60.463 55.000 0.73 0.00 0.00 1.28
253 254 1.078988 GGTTGTGACGCCCGGATAA 60.079 57.895 0.73 0.00 0.00 1.75
254 255 2.580276 GGTTGTGACGCCCGGATA 59.420 61.111 0.73 0.00 0.00 2.59
255 256 4.404098 GGGTTGTGACGCCCGGAT 62.404 66.667 0.73 0.00 34.90 4.18
259 260 2.011947 GTATAAAGGGTTGTGACGCCC 58.988 52.381 6.90 6.90 45.16 6.13
260 261 1.662122 CGTATAAAGGGTTGTGACGCC 59.338 52.381 0.00 0.00 39.38 5.68
261 262 2.340337 ACGTATAAAGGGTTGTGACGC 58.660 47.619 0.00 0.00 38.89 5.19
262 263 4.996062 AAACGTATAAAGGGTTGTGACG 57.004 40.909 0.00 0.00 35.10 4.35
263 264 5.910723 CACAAAACGTATAAAGGGTTGTGAC 59.089 40.000 7.65 0.00 39.96 3.67
264 265 5.821470 TCACAAAACGTATAAAGGGTTGTGA 59.179 36.000 11.20 11.20 41.81 3.58
265 266 6.062434 TCACAAAACGTATAAAGGGTTGTG 57.938 37.500 7.18 7.18 39.48 3.33
266 267 5.239963 CCTCACAAAACGTATAAAGGGTTGT 59.760 40.000 0.00 0.00 0.00 3.32
267 268 5.335348 CCCTCACAAAACGTATAAAGGGTTG 60.335 44.000 10.81 0.00 37.91 3.77
268 269 4.763279 CCCTCACAAAACGTATAAAGGGTT 59.237 41.667 10.81 0.00 37.91 4.11
269 270 4.329392 CCCTCACAAAACGTATAAAGGGT 58.671 43.478 10.81 0.00 37.91 4.34
270 271 3.692593 CCCCTCACAAAACGTATAAAGGG 59.307 47.826 11.67 11.67 41.61 3.95
271 272 3.692593 CCCCCTCACAAAACGTATAAAGG 59.307 47.826 0.00 0.00 0.00 3.11
272 273 4.957759 CCCCCTCACAAAACGTATAAAG 57.042 45.455 0.00 0.00 0.00 1.85
290 291 3.846430 CCGCTTCGGTAGACCCCC 61.846 72.222 0.00 0.00 42.73 5.40
291 292 3.846430 CCCGCTTCGGTAGACCCC 61.846 72.222 4.47 0.00 46.80 4.95
292 293 3.846430 CCCCGCTTCGGTAGACCC 61.846 72.222 4.47 0.00 46.80 4.46
293 294 4.525949 GCCCCGCTTCGGTAGACC 62.526 72.222 4.47 0.00 46.80 3.85
294 295 3.427598 GAGCCCCGCTTCGGTAGAC 62.428 68.421 4.47 0.00 46.80 2.59
295 296 3.145551 GAGCCCCGCTTCGGTAGA 61.146 66.667 4.47 0.00 46.80 2.59
296 297 3.140225 GAGAGCCCCGCTTCGGTAG 62.140 68.421 4.47 0.00 46.80 3.18
297 298 3.145551 GAGAGCCCCGCTTCGGTA 61.146 66.667 4.47 0.00 46.80 4.02
300 301 4.214327 GGAGAGAGCCCCGCTTCG 62.214 72.222 0.00 0.00 39.88 3.79
301 302 2.762043 AGGAGAGAGCCCCGCTTC 60.762 66.667 0.00 0.00 39.88 3.86
302 303 2.516048 TACAGGAGAGAGCCCCGCTT 62.516 60.000 0.00 0.00 39.88 4.68
303 304 2.516048 TTACAGGAGAGAGCCCCGCT 62.516 60.000 0.00 0.00 43.88 5.52
304 305 1.403687 ATTACAGGAGAGAGCCCCGC 61.404 60.000 0.00 0.00 0.00 6.13
305 306 0.390860 CATTACAGGAGAGAGCCCCG 59.609 60.000 0.00 0.00 0.00 5.73
306 307 1.501582 ACATTACAGGAGAGAGCCCC 58.498 55.000 0.00 0.00 0.00 5.80
307 308 3.961408 TCTAACATTACAGGAGAGAGCCC 59.039 47.826 0.00 0.00 0.00 5.19
308 309 4.202172 GGTCTAACATTACAGGAGAGAGCC 60.202 50.000 0.00 0.00 0.00 4.70
309 310 4.202172 GGGTCTAACATTACAGGAGAGAGC 60.202 50.000 0.00 0.00 0.00 4.09
310 311 4.342665 GGGGTCTAACATTACAGGAGAGAG 59.657 50.000 0.00 0.00 0.00 3.20
311 312 4.016479 AGGGGTCTAACATTACAGGAGAGA 60.016 45.833 0.00 0.00 0.00 3.10
312 313 4.290942 AGGGGTCTAACATTACAGGAGAG 58.709 47.826 0.00 0.00 0.00 3.20
328 330 1.210722 GAGGTGATCCAAGAAGGGGTC 59.789 57.143 0.00 0.00 38.24 4.46
353 355 1.800586 GAAGCAGTCGTGAAGCATGAA 59.199 47.619 0.00 0.00 30.77 2.57
362 364 1.871080 AAGACCAAGAAGCAGTCGTG 58.129 50.000 0.00 0.00 35.65 4.35
433 443 8.689061 AGTCAAGTCCACGTACATATACAATTA 58.311 33.333 0.00 0.00 0.00 1.40
460 473 1.971695 GTGGTTGGGGAAAGGAGCG 60.972 63.158 0.00 0.00 0.00 5.03
462 475 0.038310 GGAGTGGTTGGGGAAAGGAG 59.962 60.000 0.00 0.00 0.00 3.69
503 516 2.440539 AAGGAACGTGCAGAGTAGTG 57.559 50.000 0.00 0.00 0.00 2.74
514 527 3.187842 GTGCGAAATAAGGAAAGGAACGT 59.812 43.478 0.00 0.00 0.00 3.99
522 535 1.463056 CTGCACGTGCGAAATAAGGAA 59.537 47.619 33.22 12.51 45.83 3.36
779 793 5.880054 ATTAACTGTCGCAACTTTAGCAT 57.120 34.783 0.00 0.00 0.00 3.79
781 795 6.036735 TCCATATTAACTGTCGCAACTTTAGC 59.963 38.462 0.00 0.00 0.00 3.09
796 810 5.223449 TGGTCCCTTCGATCCATATTAAC 57.777 43.478 0.00 0.00 0.00 2.01
816 830 6.318900 TCACGCCTACAGATACTATATCATGG 59.681 42.308 0.00 0.00 0.00 3.66
819 833 7.939784 AATCACGCCTACAGATACTATATCA 57.060 36.000 0.00 0.00 0.00 2.15
934 956 4.469945 AGATCAGGATTTCCGAGTTGGTTA 59.530 41.667 0.00 0.00 42.08 2.85
1021 1043 2.434884 CATCGCGCCTGTGGAAGT 60.435 61.111 0.00 0.00 0.00 3.01
1051 1073 2.742053 CCATGAGGTTGGTCAACTTACG 59.258 50.000 12.75 0.00 40.94 3.18
1057 1079 0.774096 TCCCCCATGAGGTTGGTCAA 60.774 55.000 0.00 0.00 34.77 3.18
1352 1380 5.756833 AGTTTCTTTACGTCCTCGATTTGTT 59.243 36.000 0.00 0.00 40.62 2.83
1569 1606 1.965414 TGCCTAGACCTCCAAATCCA 58.035 50.000 0.00 0.00 0.00 3.41
1692 1729 4.378046 CCAAGTTGTGATAGTAAACCACGC 60.378 45.833 1.45 0.00 33.78 5.34
1917 3206 7.707774 AAACTTGTTGTATGTTTGTTATGCC 57.292 32.000 0.00 0.00 35.89 4.40
2206 4294 4.243007 AGCCAACTGAAATTTACAGTGC 57.757 40.909 18.05 17.20 46.01 4.40
2793 4939 1.470098 CTTGTCCATTCTCTTTGCCGG 59.530 52.381 0.00 0.00 0.00 6.13
2803 4952 3.441572 CCTTCACACCATCTTGTCCATTC 59.558 47.826 0.00 0.00 0.00 2.67
2913 5062 9.741647 TTAGATCGAGCATCATATCATGTATTC 57.258 33.333 2.38 0.00 33.29 1.75
2938 5087 1.002430 TCTGCGGACTTGAGCAAGATT 59.998 47.619 16.47 0.00 43.31 2.40
2987 5136 1.066858 CAGTCCTGTAATGGCTCGTGT 60.067 52.381 0.00 0.00 0.00 4.49
3124 5273 6.932400 ACTCTAATAGATCAGGTGTACTCTCG 59.068 42.308 0.00 0.00 0.00 4.04
3183 5332 3.119673 ACTCAGATCAACTGTAGCACGAG 60.120 47.826 0.00 0.00 45.86 4.18
3202 5351 5.428253 TGATACAATTTAGGCAGTCCACTC 58.572 41.667 0.00 0.00 33.74 3.51
3212 5361 8.682936 AAATACCTCAGCTGATACAATTTAGG 57.317 34.615 18.63 13.76 0.00 2.69
3272 5421 2.209838 TGTAGCGCTCTAATCTGTGC 57.790 50.000 16.34 0.00 39.68 4.57
3313 5462 3.858638 AGGGAATATTGGAACACCTTCCT 59.141 43.478 0.00 0.00 45.87 3.36
3349 5525 8.103305 ACATTTAGATTCATCAAGTGTGGTAGT 58.897 33.333 0.00 0.00 0.00 2.73
3365 5541 8.655935 AAAACCTCTGATCCAACATTTAGATT 57.344 30.769 0.00 0.00 0.00 2.40
3382 5558 2.833943 GCCAATCCCATCAAAAACCTCT 59.166 45.455 0.00 0.00 0.00 3.69
3386 5562 4.270245 TCTTGCCAATCCCATCAAAAAC 57.730 40.909 0.00 0.00 0.00 2.43
3420 5596 5.813672 GCCAAATCAAATGCACATAGATGTT 59.186 36.000 0.00 0.00 39.39 2.71
3467 5643 2.622942 TGGTCAGCTCACCAATGTTTTC 59.377 45.455 7.16 0.00 43.88 2.29
3525 5701 0.041135 GCGTCTCTCCGTATCTTCCG 60.041 60.000 0.00 0.00 0.00 4.30
3529 5705 1.437772 CCACGCGTCTCTCCGTATCT 61.438 60.000 9.86 0.00 35.69 1.98
3545 5721 4.979197 CAGAGAAGAGCGTAATACATCCAC 59.021 45.833 0.00 0.00 0.00 4.02
3571 5747 5.001874 AGGTTATCAAGGTTCCGAAGTTTC 58.998 41.667 0.00 0.00 0.00 2.78
3580 5756 4.072131 TGACAAGCAGGTTATCAAGGTTC 58.928 43.478 0.00 0.00 0.00 3.62
3596 5772 1.745141 GCAGCCCCTCATACTGACAAG 60.745 57.143 0.00 0.00 33.10 3.16
3712 5888 3.720002 GGTTATGGAGTTCCCCTATCCAA 59.280 47.826 0.00 0.00 45.82 3.53
3772 5948 3.605634 TGAAAGGATACCAACACCATCG 58.394 45.455 0.00 0.00 37.17 3.84
3796 5972 2.915659 TGAACGAGGACGGGCAGT 60.916 61.111 0.00 0.00 44.46 4.40
3952 6128 3.436577 ACCTCGAGTCTCTGGAGTTTA 57.563 47.619 12.31 0.00 35.12 2.01
3987 6163 2.813354 GCCCCATTCTGATCTGATCCAC 60.813 54.545 14.71 0.00 0.00 4.02
4244 6420 1.299648 CGGGGAGAATGAAGGTGCA 59.700 57.895 0.00 0.00 0.00 4.57
4270 6446 8.156165 ACAAACAAAAATGAGAGAGAGAGAGAT 58.844 33.333 0.00 0.00 0.00 2.75
4323 6542 2.098280 CGTGGTGACTGATGAGGTAGAG 59.902 54.545 0.00 0.00 0.00 2.43
4326 6545 1.182667 CCGTGGTGACTGATGAGGTA 58.817 55.000 0.00 0.00 0.00 3.08
4343 6562 3.405170 AGCAAAGCAATAACGATTCCG 57.595 42.857 0.00 0.00 42.50 4.30
4382 6601 8.519526 TCTTACATAAACCTTGCCATAACAAAG 58.480 33.333 0.00 0.00 0.00 2.77
4550 6778 7.380602 ACGTAAGACACAACATACAAAGTCTAC 59.619 37.037 0.00 0.00 43.62 2.59
4564 6792 4.340097 TGAAGAGAGGAACGTAAGACACAA 59.660 41.667 0.00 0.00 43.62 3.33
4574 6802 6.033341 CAGTAGAAGATTGAAGAGAGGAACG 58.967 44.000 0.00 0.00 0.00 3.95
4595 6823 6.140377 TCAAGAAAATAAAGAAACCCCCAGT 58.860 36.000 0.00 0.00 0.00 4.00
4629 6857 6.648879 TTGCCCATTTAATCTAGCAATACC 57.351 37.500 0.00 0.00 35.46 2.73
4633 6861 9.545105 CAATTTATTGCCCATTTAATCTAGCAA 57.455 29.630 7.82 7.82 43.59 3.91
4674 6902 1.276421 GGCAGCTGTAGGAGTTCAGAA 59.724 52.381 16.64 0.00 34.02 3.02
4718 6946 6.380274 TCCTGAAAACCAATATAGTCGAGAGT 59.620 38.462 0.00 0.00 0.00 3.24
4719 6947 6.806751 TCCTGAAAACCAATATAGTCGAGAG 58.193 40.000 0.00 0.00 0.00 3.20
4720 6948 6.785337 TCCTGAAAACCAATATAGTCGAGA 57.215 37.500 0.00 0.00 0.00 4.04
4763 6991 1.956477 GCCTGTTGTTCCAAGTGACAT 59.044 47.619 0.00 0.00 0.00 3.06
4796 7024 5.046950 AGAGACATCTTCCTACCTGTTTGTC 60.047 44.000 0.00 0.00 34.02 3.18
4801 7029 4.323569 TGAGAGACATCTTCCTACCTGT 57.676 45.455 0.00 0.00 35.30 4.00
4802 7030 5.667539 TTTGAGAGACATCTTCCTACCTG 57.332 43.478 0.00 0.00 35.30 4.00
4803 7031 5.723887 ACATTTGAGAGACATCTTCCTACCT 59.276 40.000 0.00 0.00 35.30 3.08
4804 7032 5.983540 ACATTTGAGAGACATCTTCCTACC 58.016 41.667 0.00 0.00 35.30 3.18
4805 7033 8.200792 ACATACATTTGAGAGACATCTTCCTAC 58.799 37.037 0.00 0.00 35.30 3.18
4806 7034 8.311395 ACATACATTTGAGAGACATCTTCCTA 57.689 34.615 0.00 0.00 35.30 2.94
4807 7035 7.093156 TGACATACATTTGAGAGACATCTTCCT 60.093 37.037 0.00 0.00 35.30 3.36
4821 7049 9.016623 CATTTCTATGTTGCTGACATACATTTG 57.983 33.333 8.74 1.93 47.00 2.32
4822 7050 8.742777 ACATTTCTATGTTGCTGACATACATTT 58.257 29.630 8.74 0.00 47.00 2.32
4823 7051 8.284945 ACATTTCTATGTTGCTGACATACATT 57.715 30.769 8.74 0.00 47.00 2.71
4824 7052 7.870509 ACATTTCTATGTTGCTGACATACAT 57.129 32.000 8.74 0.00 47.00 2.29
4825 7053 7.279981 GGTACATTTCTATGTTGCTGACATACA 59.720 37.037 8.74 0.00 47.00 2.29
4826 7054 7.495934 AGGTACATTTCTATGTTGCTGACATAC 59.504 37.037 8.74 1.82 47.00 2.39
4827 7055 7.564793 AGGTACATTTCTATGTTGCTGACATA 58.435 34.615 11.34 11.34 47.00 2.29
4829 7057 5.804639 AGGTACATTTCTATGTTGCTGACA 58.195 37.500 0.00 0.00 42.29 3.58
4830 7058 6.109359 AGAGGTACATTTCTATGTTGCTGAC 58.891 40.000 0.00 0.00 42.29 3.51
4831 7059 6.299805 AGAGGTACATTTCTATGTTGCTGA 57.700 37.500 0.00 0.00 42.29 4.26
4832 7060 5.525378 GGAGAGGTACATTTCTATGTTGCTG 59.475 44.000 0.00 0.00 42.29 4.41
4833 7061 5.426833 AGGAGAGGTACATTTCTATGTTGCT 59.573 40.000 0.00 0.00 42.29 3.91
4834 7062 5.525378 CAGGAGAGGTACATTTCTATGTTGC 59.475 44.000 0.00 0.00 42.29 4.17
4835 7063 6.644347 ACAGGAGAGGTACATTTCTATGTTG 58.356 40.000 0.00 0.00 42.29 3.33
4836 7064 6.875972 ACAGGAGAGGTACATTTCTATGTT 57.124 37.500 0.00 0.00 42.29 2.71
4837 7065 6.670027 AGAACAGGAGAGGTACATTTCTATGT 59.330 38.462 0.00 0.00 46.49 2.29
4838 7066 7.118496 AGAACAGGAGAGGTACATTTCTATG 57.882 40.000 0.00 0.00 37.79 2.23
4839 7067 7.621683 AGAAGAACAGGAGAGGTACATTTCTAT 59.378 37.037 0.00 0.00 0.00 1.98
4840 7068 6.954684 AGAAGAACAGGAGAGGTACATTTCTA 59.045 38.462 0.00 0.00 0.00 2.10
4841 7069 5.782845 AGAAGAACAGGAGAGGTACATTTCT 59.217 40.000 0.00 0.00 0.00 2.52
4842 7070 6.043854 AGAAGAACAGGAGAGGTACATTTC 57.956 41.667 0.00 0.00 0.00 2.17
4843 7071 5.782845 AGAGAAGAACAGGAGAGGTACATTT 59.217 40.000 0.00 0.00 0.00 2.32
4844 7072 5.186797 CAGAGAAGAACAGGAGAGGTACATT 59.813 44.000 0.00 0.00 0.00 2.71
4845 7073 4.709397 CAGAGAAGAACAGGAGAGGTACAT 59.291 45.833 0.00 0.00 0.00 2.29
4846 7074 4.082845 CAGAGAAGAACAGGAGAGGTACA 58.917 47.826 0.00 0.00 0.00 2.90
4847 7075 3.119280 GCAGAGAAGAACAGGAGAGGTAC 60.119 52.174 0.00 0.00 0.00 3.34
4848 7076 3.093057 GCAGAGAAGAACAGGAGAGGTA 58.907 50.000 0.00 0.00 0.00 3.08
4849 7077 1.899142 GCAGAGAAGAACAGGAGAGGT 59.101 52.381 0.00 0.00 0.00 3.85
4850 7078 2.094078 CAGCAGAGAAGAACAGGAGAGG 60.094 54.545 0.00 0.00 0.00 3.69
4851 7079 2.824936 TCAGCAGAGAAGAACAGGAGAG 59.175 50.000 0.00 0.00 0.00 3.20
4852 7080 2.881734 TCAGCAGAGAAGAACAGGAGA 58.118 47.619 0.00 0.00 0.00 3.71
4853 7081 3.587923 CTTCAGCAGAGAAGAACAGGAG 58.412 50.000 7.55 0.00 46.18 3.69
4854 7082 3.674528 CTTCAGCAGAGAAGAACAGGA 57.325 47.619 7.55 0.00 46.18 3.86
4861 7089 3.864243 AGCTTGATCTTCAGCAGAGAAG 58.136 45.455 12.72 7.11 44.96 2.85
4862 7090 3.977134 AGCTTGATCTTCAGCAGAGAA 57.023 42.857 12.72 0.00 33.87 2.87
4863 7091 5.358090 CAATAGCTTGATCTTCAGCAGAGA 58.642 41.667 12.72 0.00 33.87 3.10
4864 7092 4.512198 CCAATAGCTTGATCTTCAGCAGAG 59.488 45.833 12.72 2.68 33.87 3.35
4865 7093 4.080695 ACCAATAGCTTGATCTTCAGCAGA 60.081 41.667 12.72 3.26 34.04 4.26
4866 7094 4.197750 ACCAATAGCTTGATCTTCAGCAG 58.802 43.478 12.72 2.69 34.04 4.24
4867 7095 4.226427 ACCAATAGCTTGATCTTCAGCA 57.774 40.909 12.72 2.46 34.04 4.41
4877 7105 4.022068 TCAGGAGCAAAAACCAATAGCTTG 60.022 41.667 0.00 0.00 35.36 4.01
4897 7125 5.468592 AGCGCTCAGATGAAATAGTATCAG 58.531 41.667 2.64 0.00 0.00 2.90
4908 7136 2.098614 AGAGAAGAAGCGCTCAGATGA 58.901 47.619 12.06 0.00 33.62 2.92
4909 7137 2.582728 AGAGAAGAAGCGCTCAGATG 57.417 50.000 12.06 0.00 33.62 2.90
4910 7138 3.520569 GAAAGAGAAGAAGCGCTCAGAT 58.479 45.455 12.06 0.00 33.62 2.90
4911 7139 2.669670 CGAAAGAGAAGAAGCGCTCAGA 60.670 50.000 12.06 0.00 33.62 3.27
4912 7140 1.653114 CGAAAGAGAAGAAGCGCTCAG 59.347 52.381 12.06 0.00 33.62 3.35
4913 7141 1.000163 ACGAAAGAGAAGAAGCGCTCA 60.000 47.619 12.06 0.00 33.62 4.26
4914 7142 1.704070 ACGAAAGAGAAGAAGCGCTC 58.296 50.000 12.06 4.30 0.00 5.03
4915 7143 1.795286 CAACGAAAGAGAAGAAGCGCT 59.205 47.619 2.64 2.64 0.00 5.92
4916 7144 1.723067 GCAACGAAAGAGAAGAAGCGC 60.723 52.381 0.00 0.00 0.00 5.92
4917 7145 1.136224 GGCAACGAAAGAGAAGAAGCG 60.136 52.381 0.00 0.00 0.00 4.68
4918 7146 2.603224 GGCAACGAAAGAGAAGAAGC 57.397 50.000 0.00 0.00 0.00 3.86
4932 7160 1.069227 GGAACAACAGATGACGGCAAC 60.069 52.381 0.00 0.00 0.00 4.17
4933 7161 1.234821 GGAACAACAGATGACGGCAA 58.765 50.000 0.00 0.00 0.00 4.52
4934 7162 0.107643 TGGAACAACAGATGACGGCA 59.892 50.000 0.00 0.00 31.92 5.69
4935 7163 2.927004 TGGAACAACAGATGACGGC 58.073 52.632 0.00 0.00 31.92 5.68
4991 7219 0.469917 ACGGGATACATCAGGGCAAG 59.530 55.000 0.00 0.00 39.74 4.01
5033 7261 4.090761 ACAACAACCATCTGTGATCTGT 57.909 40.909 0.00 0.00 0.00 3.41
5034 7262 4.758674 AGAACAACAACCATCTGTGATCTG 59.241 41.667 0.00 0.00 0.00 2.90
5035 7263 4.758674 CAGAACAACAACCATCTGTGATCT 59.241 41.667 0.00 0.00 35.65 2.75
5036 7264 4.083110 CCAGAACAACAACCATCTGTGATC 60.083 45.833 0.00 0.00 38.06 2.92
5037 7265 3.822735 CCAGAACAACAACCATCTGTGAT 59.177 43.478 0.00 0.00 38.06 3.06
5038 7266 3.213506 CCAGAACAACAACCATCTGTGA 58.786 45.455 0.00 0.00 38.06 3.58
5039 7267 2.951642 ACCAGAACAACAACCATCTGTG 59.048 45.455 0.00 0.00 38.06 3.66
5070 7298 3.646637 ACAGTACAAAGTAGGAGCCAGTT 59.353 43.478 0.00 0.00 0.00 3.16
5074 7302 4.461781 TCAGTACAGTACAAAGTAGGAGCC 59.538 45.833 13.37 0.00 0.00 4.70
5075 7303 5.640189 TCAGTACAGTACAAAGTAGGAGC 57.360 43.478 13.37 0.00 0.00 4.70
5172 7404 3.607439 GGTTGTCATATCAAACGCATCG 58.393 45.455 0.00 0.00 0.00 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.