Multiple sequence alignment - TraesCS7D01G227600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G227600 chr7D 100.000 3083 0 0 1 3083 187792693 187795775 0.000000e+00 5694.0
1 TraesCS7D01G227600 chr7D 84.959 246 34 3 2821 3065 310817617 310817860 2.370000e-61 246.0
2 TraesCS7D01G227600 chr7B 92.262 2998 216 13 74 3065 331354525 331357512 0.000000e+00 4237.0
3 TraesCS7D01G227600 chr7B 87.124 233 29 1 2823 3055 337601445 337601214 2.360000e-66 263.0
4 TraesCS7D01G227600 chr7A 93.574 2661 161 10 1 2656 196514018 196511363 0.000000e+00 3958.0
5 TraesCS7D01G227600 chr7A 92.379 433 30 3 2652 3083 196498177 196497747 5.650000e-172 614.0
6 TraesCS7D01G227600 chr4A 85.774 239 34 0 2827 3065 16527208 16526970 1.420000e-63 254.0
7 TraesCS7D01G227600 chr1B 86.087 230 30 2 2826 3055 418836976 418837203 2.370000e-61 246.0
8 TraesCS7D01G227600 chr1B 100.000 28 0 0 91 118 345231559 345231586 6.000000e-03 52.8
9 TraesCS7D01G227600 chr1A 85.590 229 32 1 2827 3055 593028492 593028265 3.970000e-59 239.0
10 TraesCS7D01G227600 chr4D 84.937 239 31 5 2820 3055 336763568 336763332 1.430000e-58 237.0
11 TraesCS7D01G227600 chr4D 83.761 117 14 5 2662 2775 43543376 43543262 4.200000e-19 106.0
12 TraesCS7D01G227600 chr4B 84.583 240 29 7 2827 3065 176734369 176734601 6.650000e-57 231.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G227600 chr7D 187792693 187795775 3082 False 5694 5694 100.000 1 3083 1 chr7D.!!$F1 3082
1 TraesCS7D01G227600 chr7B 331354525 331357512 2987 False 4237 4237 92.262 74 3065 1 chr7B.!!$F1 2991
2 TraesCS7D01G227600 chr7A 196511363 196514018 2655 True 3958 3958 93.574 1 2656 1 chr7A.!!$R2 2655

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
524 525 1.078709 CTGTTCACCATAGTGCCACG 58.921 55.0 0.0 0.0 44.16 4.94 F
1432 1434 0.400594 ACCCTGTGTTTCCACTAGGC 59.599 55.0 0.0 0.0 42.34 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1662 1664 0.326264 GGACAGAGCATCACTGGGTT 59.674 55.000 0.00 0.00 39.38 4.11 R
2406 2409 1.126662 GTTGCAAAATAGCGCCAAAGC 59.873 47.619 2.29 1.45 37.31 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 6.600882 AATCCAATTCATATGCTCCCAATC 57.399 37.500 0.00 0.00 0.00 2.67
28 29 5.064314 TCCAATTCATATGCTCCCAATCA 57.936 39.130 0.00 0.00 0.00 2.57
70 71 7.280356 TCTGAAAAGCTACAACTAAACCTTCT 58.720 34.615 0.00 0.00 0.00 2.85
71 72 7.773690 TCTGAAAAGCTACAACTAAACCTTCTT 59.226 33.333 0.00 0.00 0.00 2.52
149 150 5.301045 TCATTGCATTTTTGCCAAAATTCCA 59.699 32.000 3.01 4.39 40.09 3.53
162 163 4.979815 CCAAAATTCCAACGTGGTAACTTC 59.020 41.667 0.00 0.00 39.03 3.01
188 189 6.097270 CCTACCAATATAATGGGAATGCCATG 59.903 42.308 7.15 0.00 45.18 3.66
191 192 6.014327 ACCAATATAATGGGAATGCCATGAAC 60.014 38.462 7.15 0.00 45.18 3.18
451 452 3.369546 AGCAAAAATTCACGACCCTTG 57.630 42.857 0.00 0.00 0.00 3.61
509 510 5.766670 CCATATCTGCACCAACATATCTGTT 59.233 40.000 0.00 0.00 46.54 3.16
524 525 1.078709 CTGTTCACCATAGTGCCACG 58.921 55.000 0.00 0.00 44.16 4.94
618 619 5.064558 AGCAGAGCCATGAATCAATAGAAG 58.935 41.667 0.00 0.00 0.00 2.85
620 621 4.215827 CAGAGCCATGAATCAATAGAAGGC 59.784 45.833 0.00 0.00 41.08 4.35
626 627 2.682856 TGAATCAATAGAAGGCGGCAAC 59.317 45.455 13.08 4.34 0.00 4.17
641 642 1.343142 GGCAACCCCAACTTACCAAAG 59.657 52.381 0.00 0.00 38.77 2.77
738 740 2.938798 GTGGGGGTGGGGTCATGA 60.939 66.667 0.00 0.00 0.00 3.07
818 820 6.253083 TCGTGAAAAATATATTCGTGCGTACA 59.747 34.615 4.09 0.00 0.00 2.90
895 897 1.955778 CTTTTCACAGCACCACCATCA 59.044 47.619 0.00 0.00 0.00 3.07
943 945 1.920734 ATCACCAACCCCATGCGCTA 61.921 55.000 9.73 0.00 0.00 4.26
1053 1055 5.085275 TCAAGAGATGGTCTATCCCAGAT 57.915 43.478 0.00 0.00 38.07 2.90
1110 1112 4.838486 CTCGCGCTCGTCCTCCAC 62.838 72.222 5.56 0.00 36.96 4.02
1188 1190 0.868406 CGCACCTCCTTCAAGTGTTC 59.132 55.000 0.00 0.00 33.96 3.18
1274 1276 2.849096 TAGCTTCCGGAAGAGGGCGA 62.849 60.000 41.64 23.65 40.79 5.54
1312 1314 1.598132 CAGATCTCAAATGCTCCTGCG 59.402 52.381 0.00 0.00 43.34 5.18
1319 1321 0.813184 AAATGCTCCTGCGATGGTTG 59.187 50.000 0.00 0.00 43.34 3.77
1322 1324 2.825836 CTCCTGCGATGGTTGCCC 60.826 66.667 0.00 0.00 0.00 5.36
1324 1326 1.971505 CTCCTGCGATGGTTGCCCTA 61.972 60.000 0.00 0.00 0.00 3.53
1423 1425 3.116091 CAGGAGCAACCCTGTGTTT 57.884 52.632 10.55 0.00 46.62 2.83
1432 1434 0.400594 ACCCTGTGTTTCCACTAGGC 59.599 55.000 0.00 0.00 42.34 3.93
1642 1644 5.020132 GTCCCTATCTATAGTGTGCCATCT 58.980 45.833 0.00 0.00 0.00 2.90
1662 1664 4.713553 TCTTGTGGAGTTAATGTTGCTCA 58.286 39.130 0.00 0.00 0.00 4.26
1676 1678 0.321919 TGCTCAACCCAGTGATGCTC 60.322 55.000 0.00 0.00 0.00 4.26
1683 1685 0.177604 CCCAGTGATGCTCTGTCCTC 59.822 60.000 0.00 0.00 0.00 3.71
1801 1803 7.934457 AGTCACTAATAATGGCATCAAACATC 58.066 34.615 0.00 0.00 0.00 3.06
1804 1806 6.017192 CACTAATAATGGCATCAAACATCCGA 60.017 38.462 0.00 0.00 0.00 4.55
1818 1820 0.327924 ATCCGACAAGGTGCCAATCA 59.672 50.000 0.00 0.00 41.99 2.57
1921 1923 5.294799 ACATTTGTTTCGCTAGTTGTGTACA 59.705 36.000 0.00 0.00 0.00 2.90
1976 1978 6.020121 GCAATCAAATTGTGATGCAGTATGAC 60.020 38.462 12.65 0.00 46.80 3.06
2031 2034 3.746492 GTGGAAACTTCTTAGACGTGCAT 59.254 43.478 0.00 0.00 0.00 3.96
2039 2042 5.989777 ACTTCTTAGACGTGCATAAGTGTTT 59.010 36.000 0.00 0.00 32.09 2.83
2113 2116 5.888691 ACAATTGTTGTGTACACTTGACA 57.111 34.783 25.60 21.99 45.34 3.58
2244 2247 9.454585 CAAGTGATGCATACAACCTATTTTATG 57.545 33.333 0.00 0.00 0.00 1.90
2294 2297 9.996554 TCTTGTCTGAACATAGAAGAAAACATA 57.003 29.630 0.00 0.00 34.73 2.29
2371 2374 3.610040 TCATGAGGGTGTGACACATAC 57.390 47.619 18.40 8.05 35.86 2.39
2527 2533 3.391506 TCTATCCTCAACATGGATGCG 57.608 47.619 0.00 0.00 43.48 4.73
2558 2564 2.022718 TGCCTGGCCCAAGTTTTATT 57.977 45.000 17.53 0.00 0.00 1.40
2637 2644 5.007332 CGCACTTTAACCTTACATATCACCC 59.993 44.000 0.00 0.00 0.00 4.61
2656 2663 2.356741 CCCGGACCCTTTTCATACACAT 60.357 50.000 0.73 0.00 0.00 3.21
2660 2667 4.142687 CGGACCCTTTTCATACACATCAAC 60.143 45.833 0.00 0.00 0.00 3.18
2661 2668 4.142687 GGACCCTTTTCATACACATCAACG 60.143 45.833 0.00 0.00 0.00 4.10
2662 2669 4.647611 ACCCTTTTCATACACATCAACGA 58.352 39.130 0.00 0.00 0.00 3.85
2672 2679 7.684670 TCATACACATCAACGAAAATTCTAGC 58.315 34.615 0.00 0.00 0.00 3.42
2713 2720 8.538409 AAGAGCATTTCAATACAAAACCAATC 57.462 30.769 0.00 0.00 0.00 2.67
2838 2845 8.558700 TGAAATATGATGTGTGATATGTTTCCG 58.441 33.333 0.00 0.00 32.85 4.30
2839 2846 7.439157 AATATGATGTGTGATATGTTTCCGG 57.561 36.000 0.00 0.00 0.00 5.14
2841 2848 1.745232 TGTGTGATATGTTTCCGGCC 58.255 50.000 0.00 0.00 0.00 6.13
2850 2857 5.719563 TGATATGTTTCCGGCCTATCTATCA 59.280 40.000 0.00 2.61 0.00 2.15
2851 2858 3.746045 TGTTTCCGGCCTATCTATCAC 57.254 47.619 0.00 0.00 0.00 3.06
2855 2862 4.602340 TTCCGGCCTATCTATCACTTTC 57.398 45.455 0.00 0.00 0.00 2.62
2857 2864 2.557056 CCGGCCTATCTATCACTTTCGA 59.443 50.000 0.00 0.00 0.00 3.71
2906 2913 8.875803 CAATCTTGTATGCTTTATGTGCAATTT 58.124 29.630 0.00 0.00 44.01 1.82
2943 2950 6.877322 TGGAAACTAACCTATTAACTGAGTGC 59.123 38.462 0.00 0.00 0.00 4.40
2944 2951 6.315642 GGAAACTAACCTATTAACTGAGTGCC 59.684 42.308 0.00 0.00 0.00 5.01
2945 2952 5.354842 ACTAACCTATTAACTGAGTGCCC 57.645 43.478 0.00 0.00 0.00 5.36
2951 2958 2.584835 TTAACTGAGTGCCCAATGCT 57.415 45.000 0.00 0.00 42.00 3.79
2958 2965 0.995024 AGTGCCCAATGCTAGTTCCT 59.005 50.000 0.00 0.00 42.00 3.36
2969 2976 2.884639 TGCTAGTTCCTGTTTTTGCCTC 59.115 45.455 0.00 0.00 0.00 4.70
2977 2984 8.245195 AGTTCCTGTTTTTGCCTCTTTTATTA 57.755 30.769 0.00 0.00 0.00 0.98
2978 2985 8.700973 AGTTCCTGTTTTTGCCTCTTTTATTAA 58.299 29.630 0.00 0.00 0.00 1.40
3001 3008 9.968870 TTAATACACAGAAAAACCATACCAAAC 57.031 29.630 0.00 0.00 0.00 2.93
3002 3009 5.923733 ACACAGAAAAACCATACCAAACA 57.076 34.783 0.00 0.00 0.00 2.83
3006 3013 6.816140 CACAGAAAAACCATACCAAACAAAGT 59.184 34.615 0.00 0.00 0.00 2.66
3027 3034 4.514066 AGTCCAAACACGATGAAACCTTAC 59.486 41.667 0.00 0.00 0.00 2.34
3028 3035 4.514066 GTCCAAACACGATGAAACCTTACT 59.486 41.667 0.00 0.00 0.00 2.24
3065 3072 6.635755 AGACCAAAAGAGACTATACAAGCTC 58.364 40.000 0.00 0.00 0.00 4.09
3066 3073 5.735766 ACCAAAAGAGACTATACAAGCTCC 58.264 41.667 0.00 0.00 32.14 4.70
3067 3074 5.119694 CCAAAAGAGACTATACAAGCTCCC 58.880 45.833 0.00 0.00 32.14 4.30
3068 3075 5.119694 CAAAAGAGACTATACAAGCTCCCC 58.880 45.833 0.00 0.00 32.14 4.81
3069 3076 2.965562 AGAGACTATACAAGCTCCCCC 58.034 52.381 0.00 0.00 32.14 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 6.079336 TGATTGGGAGCATATGAATTGGATT 58.921 36.000 6.97 0.00 0.00 3.01
13 14 8.521170 AATATCAATCTGATTGGGAGCATATG 57.479 34.615 25.52 0.00 38.26 1.78
18 19 7.882271 AGTAAGAATATCAATCTGATTGGGAGC 59.118 37.037 25.52 13.88 38.26 4.70
48 49 7.856398 GTGAAGAAGGTTTAGTTGTAGCTTTTC 59.144 37.037 0.00 0.00 32.68 2.29
70 71 1.179152 CATGATGGCCTGCAAGTGAA 58.821 50.000 3.32 0.00 0.00 3.18
71 72 0.681887 CCATGATGGCCTGCAAGTGA 60.682 55.000 3.32 0.00 0.00 3.41
149 150 2.328319 TGGTAGGGAAGTTACCACGTT 58.672 47.619 6.96 0.00 44.20 3.99
162 163 4.956075 GGCATTCCCATTATATTGGTAGGG 59.044 45.833 11.73 0.00 34.77 3.53
188 189 2.271944 AAAGTGGCCACCTAGTGTTC 57.728 50.000 32.29 3.91 0.00 3.18
191 192 4.079253 ACATTAAAAGTGGCCACCTAGTG 58.921 43.478 32.29 25.55 0.00 2.74
266 267 9.228949 GCCAATAGTGAATCAGATTTATGATCT 57.771 33.333 0.00 0.00 39.00 2.75
344 345 1.085893 CCATGCTTGCGTATCACACA 58.914 50.000 0.00 0.00 0.00 3.72
372 373 2.689658 CATAGTGACCCTCATACCCCA 58.310 52.381 0.00 0.00 0.00 4.96
425 426 5.025826 GGGTCGTGAATTTTTGCTAATACG 58.974 41.667 0.00 0.00 0.00 3.06
451 452 7.617041 ATTCACTAGTTGGATTTTGTAGAGC 57.383 36.000 0.00 0.00 0.00 4.09
509 510 0.673333 CTTGCGTGGCACTATGGTGA 60.673 55.000 14.15 0.00 45.61 4.02
524 525 6.521151 AATATAGCATGGCCTAAATCTTGC 57.479 37.500 3.32 1.96 35.24 4.01
618 619 2.282603 TAAGTTGGGGTTGCCGCC 60.283 61.111 0.00 0.00 43.84 6.13
620 621 0.824182 TTGGTAAGTTGGGGTTGCCG 60.824 55.000 0.00 0.00 32.64 5.69
626 627 4.278310 CCCTAATCTTTGGTAAGTTGGGG 58.722 47.826 0.00 0.00 37.12 4.96
651 652 9.753669 GTAAATGCTAAATAATTTGTGTTTGCC 57.246 29.630 0.00 0.00 0.00 4.52
702 704 3.196254 CCACCCCCAGATTGAGAAAATTG 59.804 47.826 0.00 0.00 0.00 2.32
818 820 6.403878 ACACGTGTAAAGGTTGAGCTATAAT 58.596 36.000 21.98 0.00 0.00 1.28
895 897 3.126858 GCACACGTGTCATATGAAATGGT 59.873 43.478 20.49 10.52 0.00 3.55
1053 1055 1.284491 TGTTGCAATGGAGGATAGCCA 59.716 47.619 0.59 0.00 40.24 4.75
1110 1112 1.425412 CTTACCTTCGTTCCACACCG 58.575 55.000 0.00 0.00 0.00 4.94
1112 1114 2.140717 CACCTTACCTTCGTTCCACAC 58.859 52.381 0.00 0.00 0.00 3.82
1120 1122 3.751698 CCTTCTTTTCCACCTTACCTTCG 59.248 47.826 0.00 0.00 0.00 3.79
1188 1190 1.270550 GGAATGTCTTGTTGCACTGGG 59.729 52.381 0.00 0.00 0.00 4.45
1251 1253 1.045911 CCTCTTCCGGAAGCTAGCCT 61.046 60.000 34.93 0.00 38.28 4.58
1274 1276 0.324614 TGATTGGTGTGTCTGGCGAT 59.675 50.000 0.00 0.00 0.00 4.58
1319 1321 4.832608 CGGGTTGCGAGGTAGGGC 62.833 72.222 0.00 0.00 0.00 5.19
1423 1425 4.347000 GGAACATACCTTATGCCTAGTGGA 59.653 45.833 0.00 0.00 39.79 4.02
1432 1434 5.981315 ACGAACATACGGAACATACCTTATG 59.019 40.000 0.00 0.00 38.60 1.90
1615 1617 5.606749 TGGCACACTATAGATAGGGACAAAT 59.393 40.000 6.78 0.00 37.24 2.32
1642 1644 4.037446 GGTTGAGCAACATTAACTCCACAA 59.963 41.667 14.55 0.00 42.85 3.33
1662 1664 0.326264 GGACAGAGCATCACTGGGTT 59.674 55.000 0.00 0.00 39.38 4.11
1676 1678 1.471287 TGGTGTATTCGTCGAGGACAG 59.529 52.381 7.43 0.00 32.09 3.51
1683 1685 0.638746 GCGTCTTGGTGTATTCGTCG 59.361 55.000 0.00 0.00 0.00 5.12
1801 1803 1.942657 CTATGATTGGCACCTTGTCGG 59.057 52.381 0.00 0.00 39.35 4.79
1804 1806 2.954318 GCATCTATGATTGGCACCTTGT 59.046 45.455 0.00 0.00 0.00 3.16
1818 1820 2.022195 CTGTTGCCAGCTTGCATCTAT 58.978 47.619 13.95 0.00 41.70 1.98
1921 1923 4.889995 GCATCCTTATTAAGCTCCACCTTT 59.110 41.667 0.00 0.00 0.00 3.11
1976 1978 8.781196 ACTTGTGCAATCTATAGCTTATTGATG 58.219 33.333 13.96 0.12 32.37 3.07
2005 2008 5.277828 GCACGTCTAAGAAGTTTCCACAAAT 60.278 40.000 0.00 0.00 0.00 2.32
2145 2148 5.861787 CCAACATCGAAGAAAATAACAACCC 59.138 40.000 0.00 0.00 43.58 4.11
2146 2149 6.674066 TCCAACATCGAAGAAAATAACAACC 58.326 36.000 0.00 0.00 43.58 3.77
2371 2374 3.103637 TTTTTGTCCTCCACCACCG 57.896 52.632 0.00 0.00 0.00 4.94
2390 2393 4.402474 GCCAAAGCCTGTATTACCTCATTT 59.598 41.667 0.00 0.00 0.00 2.32
2406 2409 1.126662 GTTGCAAAATAGCGCCAAAGC 59.873 47.619 2.29 1.45 37.31 3.51
2527 2533 5.289083 TGGGCCAGGCAATTATTTTAATC 57.711 39.130 15.19 0.00 0.00 1.75
2603 2610 7.871973 TGTAAGGTTAAAGTGCGTATTACTTCA 59.128 33.333 0.00 0.00 37.39 3.02
2604 2611 8.243289 TGTAAGGTTAAAGTGCGTATTACTTC 57.757 34.615 0.00 0.00 37.39 3.01
2613 2620 5.007332 GGGTGATATGTAAGGTTAAAGTGCG 59.993 44.000 0.00 0.00 0.00 5.34
2637 2644 3.605634 TGATGTGTATGAAAAGGGTCCG 58.394 45.455 0.00 0.00 0.00 4.79
2656 2663 5.627499 ATGCTTGCTAGAATTTTCGTTGA 57.373 34.783 0.00 0.00 0.00 3.18
2660 2667 8.551205 TCAATAGTATGCTTGCTAGAATTTTCG 58.449 33.333 0.00 0.00 0.00 3.46
2672 2679 8.922058 AAATGCTCTTTTCAATAGTATGCTTG 57.078 30.769 0.00 0.00 0.00 4.01
2736 2743 9.846248 GACTGCATAACTTGTTCATCTTTTATT 57.154 29.630 0.00 0.00 0.00 1.40
2748 2755 5.127031 ACCAAACTTTGACTGCATAACTTGT 59.873 36.000 2.87 0.00 0.00 3.16
2758 2765 6.558771 TGATATGTGACCAAACTTTGACTG 57.441 37.500 2.87 0.00 0.00 3.51
2822 2829 1.280710 AGGCCGGAAACATATCACACA 59.719 47.619 5.05 0.00 0.00 3.72
2825 2832 4.273148 AGATAGGCCGGAAACATATCAC 57.727 45.455 5.05 0.00 0.00 3.06
2826 2833 5.719563 TGATAGATAGGCCGGAAACATATCA 59.280 40.000 5.05 8.54 0.00 2.15
2831 2838 3.305720 AGTGATAGATAGGCCGGAAACA 58.694 45.455 5.05 0.00 0.00 2.83
2832 2839 4.338379 AAGTGATAGATAGGCCGGAAAC 57.662 45.455 5.05 0.00 0.00 2.78
2838 2845 5.542779 ACAATCGAAAGTGATAGATAGGCC 58.457 41.667 0.00 0.00 0.00 5.19
2839 2846 7.224753 TGAAACAATCGAAAGTGATAGATAGGC 59.775 37.037 0.00 0.00 0.00 3.93
2915 2922 9.856162 ACTCAGTTAATAGGTTAGTTTCCAAAA 57.144 29.630 0.00 0.00 0.00 2.44
2921 2928 6.178324 GGGCACTCAGTTAATAGGTTAGTTT 58.822 40.000 0.00 0.00 0.00 2.66
2937 2944 5.756179 CAGGAACTAGCATTGGGCACTCA 62.756 52.174 0.00 0.00 41.64 3.41
2938 2945 3.260888 CAGGAACTAGCATTGGGCACTC 61.261 54.545 0.00 0.00 41.64 3.51
2943 2950 4.559153 CAAAAACAGGAACTAGCATTGGG 58.441 43.478 0.00 0.00 36.02 4.12
2944 2951 3.989817 GCAAAAACAGGAACTAGCATTGG 59.010 43.478 0.00 0.00 36.02 3.16
2945 2952 3.989817 GGCAAAAACAGGAACTAGCATTG 59.010 43.478 0.00 0.00 36.02 2.82
2951 2958 7.833285 ATAAAAGAGGCAAAAACAGGAACTA 57.167 32.000 0.00 0.00 36.02 2.24
2977 2984 8.012957 TGTTTGGTATGGTTTTTCTGTGTATT 57.987 30.769 0.00 0.00 0.00 1.89
2978 2985 7.589958 TGTTTGGTATGGTTTTTCTGTGTAT 57.410 32.000 0.00 0.00 0.00 2.29
2980 2987 5.923733 TGTTTGGTATGGTTTTTCTGTGT 57.076 34.783 0.00 0.00 0.00 3.72
2983 2990 6.478673 GGACTTTGTTTGGTATGGTTTTTCTG 59.521 38.462 0.00 0.00 0.00 3.02
3001 3008 4.041723 GGTTTCATCGTGTTTGGACTTTG 58.958 43.478 0.00 0.00 0.00 2.77
3002 3009 3.951680 AGGTTTCATCGTGTTTGGACTTT 59.048 39.130 0.00 0.00 0.00 2.66
3006 3013 4.513692 CAGTAAGGTTTCATCGTGTTTGGA 59.486 41.667 0.00 0.00 0.00 3.53
3049 3056 2.965562 GGGGGAGCTTGTATAGTCTCT 58.034 52.381 0.00 0.00 31.64 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.